Citrus Sinensis ID: 014499

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRRRSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL
Secondary Structure (PSIPRED)
ccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEHHHcccccHHHHHHHHHHHHHHccccEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccccEEEcccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHccccccccccccEEEEccccccHHHHHccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEcccccEEEcccccccccccccccccccccccccccEEEEEEccccccccccccEEccccccHHHHHHHHHHHHHcccEEEHHHHHHHccccHHHHHHHHHHHHHHccccEEEcccccEEEEccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccEEEHHHHcHHcccccccccHcccHHHHEEccccccccccccEEEEccHHHHHHHHHcccccccccccccccccccHHHHHcccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtsistcftttpksrffftplrpsinlkppdsfpriqplpfprisgkipgsrvlvpvakastdvavgvgpgrivesdklpadVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADtdgflevsdegdvlyvfpnnyraKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILssksddddrgrrrrsfdsgfnifispsdlfwywdpyyyrrrrvqtddddkkmNFIKSVFSFvfgegdpnqgieEKRWKLIGEYIAsnggvvtaeelapyldidrtmsdesyvlpvllrfdgqpeideegnilyrfpsfqrtaASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQemavtpngFLKFVAYIFPLLQL
Flexible Loop (DISEMBL)
mtsistcftttpksrffftplrpsinlkppdsfPRIQPLPFPRISGKIPGSRVLVPVAKAStdvavgvgpgrivesdklpadVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAIlssksddddrgrrrrsfdsgfnifispsdlfwywdpYYYRRRRvqtddddkkMNFIKSVFsfvfgegdpnqGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEgnilyrfpsfqrtaasqrigrkeyvgrrwadaiggvekifrekkwefskTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL
Low Complexity Region (SEG)
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILssksddddrgrrrrsfdsgfNIFISPSDLFWYWDPyyyrrrrVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL
Disordered region (IsUnstruct)
******CFTTTPKSRFFFTPLR****************LPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAIL****************DSGFNIFISPSDLFWYWDPYYYRR*************FIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLL**
Disordered Region (DISOPRED)
*****TCFTTTPKSR***********************************************************************AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAII***********************NIFISPSDLFWYWDP*********************SVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQ******************************EKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL
Disordered Region (DISEMBL)
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSS**********RRSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL
Disordered Region (DISPRO)
*TSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSK************FDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQR**********W***IGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRRRSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q8GW20	523	Uncharacterized protein A	yes	no	0.985	0.797	0.618	1e-146

>sp|Q8GW20|Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE=1 SV=2

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/435 (61%), Positives = 334/435 (76%), Gaps = 18/435 (4%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
           M  +STC   +P+ ++   +  +P  I L+ P    SFPR+  L    +S +   +R  +
Sbjct: 1   MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query: 56  PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
            V KA++   V+  + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59  AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
           AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
           RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP 
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
           YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query: 293 APYLDI---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
           APYLD+      M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R  RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355

Query: 349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
           VG +W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct: 356 VG-KWFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query: 409 GFLKFVAYIFPLLQL 423
           GFL FV  I+PLLQ+
Sbjct: 415 GFLTFVKNIYPLLQI 429

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
449462964	516	PREDICTED: uncharacterized protein At5g0	0.985	0.808	0.703	1e-165
255575701	514	conserved hypothetical protein [Ricinus	0.981	0.807	0.705	1e-163
224077276	374	predicted protein [Populus trichocarpa]	0.860	0.973	0.768	1e-162
225440882	495	PREDICTED: uncharacterized protein At5g0	0.874	0.747	0.75	1e-158
357503799	507	hypothetical protein MTR_7g030010 [Medic	0.957	0.798	0.686	1e-153
356537645	505	PREDICTED: uncharacterized protein At5g0	0.957	0.801	0.673	1e-148
312283379	523	unnamed protein product [Thellungiella h	0.990	0.801	0.618	1e-147
356495901	500	PREDICTED: uncharacterized protein At5g0	0.938	0.794	0.673	1e-145
21536751	523	unknown [Arabidopsis thaliana]	0.985	0.797	0.620	1e-145
297740116	432	unnamed protein product [Vitis vinifera]	0.789	0.773	0.764	1e-145

>gi|449462964|ref|XP_004149205.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Cucumis sativus] gi|449500907|ref|XP_004161226.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Cucumis sativus]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/428 (70%), Positives = 361/428 (84%), Gaps = 11/428 (2%)

Query: 1   MTSISTCFTTTPKSRFFFTPL---RPSINLKPPD-SFPRIQPLPFPRISGKIPGSRVLVP 56
           M SIST F  +  SR +F PL   +PSI +KP   +FP    LP  RI+     +R  VP
Sbjct: 1   MASISTYFAISQSSRLYFHPLITLKPSICVKPSTITFP---ALP-TRIAPPESRARGFVP 56

Query: 57  VAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK 116
             +A  D+   + PG +VESDKLP+DVR R M+AV+AC  RVTIGDVA +AGLKLNEAQK
Sbjct: 57  TVRAGIDIPSDIRPGNVVESDKLPSDVRKRTMEAVEACGGRVTIGDVASRAGLKLNEAQK 116

Query: 117 ALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVL 176
           ALQALAADTDGFLEVSDEGDVLYVFP +YR+KLAAKSF +K EP+I+K+KAAAEY +RV 
Sbjct: 117 ALQALAADTDGFLEVSDEGDVLYVFPKDYRSKLAAKSFWIKFEPLIEKSKAAAEYLVRVS 176

Query: 177 FGTALIASIVIVFTAIIAILSSKSDDDDRGRRRRSFDSGFNIFISPSDLFWYWDPYYYRR 236
           FGTALIASIV+V+T IIA++SS+S++D+RGRR RS+DSGF  ++SP+DLFWYWDPYYYRR
Sbjct: 177 FGTALIASIVLVYTTIIALISSRSEEDNRGRRSRSYDSGFTFYLSPTDLFWYWDPYYYRR 236

Query: 237 RRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYL 296
           RR+QT+D+  KMNFI+S+FSFVFG+GDPNQGIEE+RWKLIG+YI+SNGGVV AEELAPYL
Sbjct: 237 RRLQTEDN--KMNFIESIFSFVFGDGDPNQGIEEERWKLIGQYISSNGGVVAAEELAPYL 294

Query: 297 DI-DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWAD 355
           D+ +R   DESY+LPVLLRFDGQPEIDEEGNILYRFPS QRTA+SQR GRKEYVGR+WAD
Sbjct: 295 DVSERNTDDESYILPVLLRFDGQPEIDEEGNILYRFPSLQRTASSQRSGRKEYVGRKWAD 354

Query: 356 AIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVA 415
            +GG+EKIF+EKKW FSKT+ SER MAIGLGGLNLFGVI+LGAML+++AV P+G +KFV+
Sbjct: 355 WVGGIEKIFKEKKWVFSKTSNSERAMAIGLGGLNLFGVIVLGAMLKDVAVKPSGLIKFVS 414

Query: 416 YIFPLLQL 423
            IFPLLQ+
Sbjct: 415 DIFPLLQI 422

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575701|ref|XP_002528750.1| conserved hypothetical protein [Ricinus communis] gi|223531844|gb|EEF33662.1| conserved hypothetical protein [Ricinus communis]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 302/428 (70%), Positives = 353/428 (82%), Gaps = 13/428 (3%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV-PVAK 59
           M SISTCFT +PK+R   T  +PS  LKPPDSF +I      R+S K+   RV    V +
Sbjct: 1   MASISTCFTISPKTRIILTS-KPSCRLKPPDSFTKI------RLSPKLSDPRVYRGSVIR 53

Query: 60  ASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119
           A  D+  G+ PG  VESDKL ADVR RAM+AVDA   RVTIGDVA KAGLKLNEAQKALQ
Sbjct: 54  AGIDLPSGIKPGGAVESDKLRADVRKRAMEAVDAFGGRVTIGDVASKAGLKLNEAQKALQ 113

Query: 120 ALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGT 179
           ALAADT+GFLEVSDEGDVLY FP +YR+KLAAKSF++KVEP++DKAKA  EY IRV FGT
Sbjct: 114 ALAADTNGFLEVSDEGDVLYAFPKDYRSKLAAKSFKMKVEPLVDKAKATGEYLIRVSFGT 173

Query: 180 ALIASIVIVFTAIIAILSSKSDDDDRGRR-RRSFDSGFNIFISPSDLFWYWDPYYYRRRR 238
           ALIASIV+V+T IIA+LSS+S++D+RGRR  RS+DSGF  + SP+DLFWYWDPYYYRRR+
Sbjct: 174 ALIASIVLVYTTIIALLSSRSEEDNRGRRGGRSYDSGFTFYFSPTDLFWYWDPYYYRRRQ 233

Query: 239 VQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDI 298
           ++ DDDD KMNFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YI+SNGGVV AEELAP+LD+
Sbjct: 234 IKKDDDD-KMNFIESVFSFVFGDGDPNQGIEEERWKLIGQYISSNGGVVAAEELAPFLDL 292

Query: 299 ---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWAD 355
              D+  +DESY+LPVLLRFDGQPEIDEE  ILYRFPS QRTA+SQR GRKEY+GRRW D
Sbjct: 293 QTTDKNTNDESYILPVLLRFDGQPEIDEEETILYRFPSLQRTASSQRSGRKEYIGRRWTD 352

Query: 356 AIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVA 415
            +GGVEK FRE+KWEFSKT  SER M IGLGG+NLFGVI+LGAML+++A  P G + FVA
Sbjct: 353 WVGGVEKFFRERKWEFSKTGASERAMVIGLGGINLFGVIVLGAMLKDIAAMPGGLINFVA 412

Query: 416 YIFPLLQL 423
            IFPLLQ+
Sbjct: 413 GIFPLLQV 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077276|ref|XP_002305197.1| predicted protein [Populus trichocarpa] gi|222848161|gb|EEE85708.1| predicted protein [Populus trichocarpa]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/371 (76%), Positives = 329/371 (88%), Gaps = 7/371 (1%)

Query: 59  KASTDVA--VGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK 116
           KA+ DV   +G+ PG +VE+DKLP+DVRNRAM+AVDAC  RVTIGDVA +AGLKLNEAQK
Sbjct: 5   KATADVTKTMGIRPGSVVETDKLPSDVRNRAMEAVDACGGRVTIGDVASRAGLKLNEAQK 64

Query: 117 ALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVL 176
           ALQALA+DTDGFLEVSDEGDVLYVFP +YR+KLAAKS RLK EP+ +K KAAAEY IRV 
Sbjct: 65  ALQALASDTDGFLEVSDEGDVLYVFPKDYRSKLAAKSLRLKFEPLFEKGKAAAEYLIRVS 124

Query: 177 FGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPYYYR 235
           FGTALIASIVIV+T IIAILSS  D++DRGRRR RSFD+GF  ++SP+DLFWYWDPYYYR
Sbjct: 125 FGTALIASIVIVYTTIIAILSSSRDENDRGRRRSRSFDTGFAFYLSPTDLFWYWDPYYYR 184

Query: 236 RRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPY 295
           RR+++TD  D KMNFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YI+SNGGVV AEELAP+
Sbjct: 185 RRQLRTDGGD-KMNFIESVFSFVFGDGDPNQGIEEERWKLIGQYISSNGGVVAAEELAPF 243

Query: 296 LDIDRT--MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRW 353
           LD+  T  MSDESY+LPVLLRFDG+PEIDEEGNILY+FPS QRTA+S+R GRKEYVG+RW
Sbjct: 244 LDLKTTEDMSDESYILPVLLRFDGKPEIDEEGNILYQFPSLQRTASSKRSGRKEYVGKRW 303

Query: 354 ADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN-GFLK 412
           AD +GGV K FREK W+FSKT+ SER MAIGLGGLNLFGVIILG MLQ+MA+T N GF+K
Sbjct: 304 ADWVGGVGKFFREKTWQFSKTSSSERAMAIGLGGLNLFGVIILGTMLQDMAITQNGGFIK 363

Query: 413 FVAYIFPLLQL 423
           FV+ IFPLLQ+
Sbjct: 364 FVSSIFPLLQV 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440882|ref|XP_002276711.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Vitis vinifera]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/376 (75%), Positives = 333/376 (88%), Gaps = 6/376 (1%)

Query: 52  RVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKL 111
           +V VPV +A  DVA G+ PG IVE+DKLP++VR RAMDAVDAC  RVTIGDVA K GLKL
Sbjct: 28  QVFVPVVRAGLDVASGIRPGGIVETDKLPSNVRKRAMDAVDACGGRVTIGDVASKGGLKL 87

Query: 112 NEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEY 171
           NEAQKALQALAADT+GFLEVSDEGDVLYVFP +YR+KLAAKSFR+K+EP ++KAK+AAEY
Sbjct: 88  NEAQKALQALAADTNGFLEVSDEGDVLYVFPKDYRSKLAAKSFRIKLEPFVEKAKSAAEY 147

Query: 172 SIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRR-RRSFDSGFNIFISPSDLFWYWD 230
            +RV FGTALIASIV+V+T IIA+LSS+SD+D+RGRR  RS+DSGF  +++P+DLFWYWD
Sbjct: 148 LVRVSFGTALIASIVLVYTTIIALLSSRSDEDNRGRRGGRSYDSGFTFYLNPADLFWYWD 207

Query: 231 PYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAE 290
           PYYYRRRR+Q +DD   MNFI+SVFSFVFG+GDPNQGIE++RWKLIG+YI+SNGGVVTAE
Sbjct: 208 PYYYRRRRIQKEDD--GMNFIESVFSFVFGDGDPNQGIEDERWKLIGQYISSNGGVVTAE 265

Query: 291 ELAPYLDI---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKE 347
           ELAPYLD+   D  + DESY+LPVLLRF+GQPE+DEEGNILYRFPS QRTA+SQR GRKE
Sbjct: 266 ELAPYLDLETADNNLVDESYILPVLLRFEGQPEVDEEGNILYRFPSLQRTASSQRSGRKE 325

Query: 348 YVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTP 407
           YVG+RW D +GGVEK F+EKKW+FSKT+ SER M IGLGGLNLFGVIILG ML+ +AVTP
Sbjct: 326 YVGKRWTDWVGGVEKFFKEKKWQFSKTSNSERAMVIGLGGLNLFGVIILGTMLKNVAVTP 385

Query: 408 NGFLKFVAYIFPLLQL 423
           +GF+ FV+ IFPLLQ+
Sbjct: 386 SGFITFVSDIFPLLQI 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503799|ref|XP_003622188.1| hypothetical protein MTR_7g030010 [Medicago truncatula] gi|355497203|gb|AES78406.1| hypothetical protein MTR_7g030010 [Medicago truncatula]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/431 (68%), Positives = 343/431 (79%), Gaps = 26/431 (6%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFP---RISGKIPGSRVLVPV 57
           M +I TCF  TP SR         +    P   P  +P  FP   RI+ +  G  ++VP 
Sbjct: 1   MATIPTCFAITPTSRL--------LTFTAP---PFHKPFIFPQNRRINKR--GWALVVP- 46

Query: 58  AKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKA 117
            +A+ DV  G+ PG +VESDKL +DVR R MDAVD C  RVT+GDVA +AGLKLNEAQKA
Sbjct: 47  -RAAVDVGRGIRPGGVVESDKLSSDVRKRTMDAVDGCGGRVTVGDVASRAGLKLNEAQKA 105

Query: 118 LQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLF 177
           LQALAADTDGFLEVS+EGDVLYVFP NYR+KL AKSFR+K EP I+KAK A EY IRV F
Sbjct: 106 LQALAADTDGFLEVSEEGDVLYVFPKNYRSKLGAKSFRIKAEPFIEKAKGAGEYLIRVSF 165

Query: 178 GTALIASIVIVFTAIIAIL-SSKSDDDDRGRR-RRSFDSGFNIFISPSDLFWYWDPYYYR 235
           GTALIASIVIV+TAIIA++ SS+S+DD+RGRR  RS+DSGFN + +P DLFWYWDPYY R
Sbjct: 166 GTALIASIVIVYTAIIALVTSSRSEDDNRGRRGGRSYDSGFNFYFNPVDLFWYWDPYYNR 225

Query: 236 RRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPY 295
           RRRVQ DD+  K NFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YIASNGGVV AEELAPY
Sbjct: 226 RRRVQVDDN--KTNFIESVFSFVFGDGDPNQGIEEERWKLIGQYIASNGGVVAAEELAPY 283

Query: 296 LDID---RTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRR 352
           LDID   R   DESY+LPVLLRFDGQP +DEEGNILYRFPS QRT ASQ+  RKEYVG+R
Sbjct: 284 LDIDSTERIKDDESYILPVLLRFDGQPVVDEEGNILYRFPSLQRT-ASQKSKRKEYVGKR 342

Query: 353 WADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLK 412
           WAD +GGVEK F EK+W+FSKT+ SER M +GLGGLNLFGVI+LG ML+E+AV P+ F+K
Sbjct: 343 WADWVGGVEKFFEEKRWQFSKTSSSERAMVVGLGGLNLFGVIVLGTMLKEVAVRPDSFIK 402

Query: 413 FVAYIFPLLQL 423
           FVA IFPLLQ+
Sbjct: 403 FVADIFPLLQI 413

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537645|ref|XP_003537336.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Glycine max]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 289/429 (67%), Positives = 334/429 (77%), Gaps = 24/429 (5%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLP-FPRISGKIPGSRVLVPVAK 59
           M SISTC T TP  R     L  S   K   +FP +Q  P    ++ ++  SRVLV    
Sbjct: 1   MASISTCITVTPTCRLARRLL--SFTSKQAIAFPSVQQNPVIGGVTKRVWDSRVLV---- 54

Query: 60  ASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119
                    GPG  VE+DKLP+DVR R MDAVD C  R+TIGDVA +AGL LN+AQKALQ
Sbjct: 55  --------AGPGGAVETDKLPSDVRKRTMDAVDECGGRMTIGDVASRAGLNLNQAQKALQ 106

Query: 120 ALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGT 179
           ALAADT+GFLEVS+EGDVLYVFP +YR++L AKSFR+K EP  +KAKAA EY IRV FGT
Sbjct: 107 ALAADTNGFLEVSEEGDVLYVFPKDYRSRLGAKSFRIKAEPFFEKAKAAGEYFIRVSFGT 166

Query: 180 ALIASIVIVFTAIIAIL-SSKSDDDDRGRR-RRSFDSGFNIFISPSDLFWYWDPYYYRRR 237
           ALIASIVIV+T IIA++ SS+S++D+RGRR  RS+DSGF  + +P DLFWYWDPYYYRR+
Sbjct: 167 ALIASIVIVYTTIIALVTSSRSEEDNRGRRGGRSYDSGFTFYFNPVDLFWYWDPYYYRRQ 226

Query: 238 RVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLD 297
           R Q DDD  KMNFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YIASNGGVV AEELAPYLD
Sbjct: 227 RPQADDD--KMNFIESVFSFVFGDGDPNQGIEEERWKLIGQYIASNGGVVAAEELAPYLD 284

Query: 298 IDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWA 354
           ID T     DESY+LPVLLRFDGQPE+DEEGNILYRFPS Q T ASQ+  RKEYVGRRWA
Sbjct: 285 IDSTEGIKDDESYILPVLLRFDGQPEVDEEGNILYRFPSLQ-TTASQKSKRKEYVGRRWA 343

Query: 355 DAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFV 414
           D + G+EK F+EKKW+FS T  SER M IGLGGLNLFGVIILG ML++ AV P+ F+KFV
Sbjct: 344 DWV-GIEKFFKEKKWQFSITGTSERAMVIGLGGLNLFGVIILGTMLKDTAVAPSSFIKFV 402

Query: 415 AYIFPLLQL 423
           A IFPLLQ+
Sbjct: 403 ADIFPLLQI 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283379|dbj|BAJ34555.1| unnamed protein product [Thellungiella halophila]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/433 (61%), Positives = 332/433 (76%), Gaps = 14/433 (3%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRPSINLKPP----DSFPRIQPLPFPRISGKIPGSRVLV 55
           MT +STC   +PK ++  F+  +P I L+ P     +FP I    FP    +     + V
Sbjct: 1   MTCVSTCLIVSPKLTQSGFSSKKPVIRLRSPVDRCYAFPGIFTKRFPSSRREFTSHGIAV 60

Query: 56  PVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115
             A +   V+  +  G +VESDKLP DVR RAM+AVD C RRVT+GDVA +AGLK+ EAQ
Sbjct: 61  VRAASIDKVSGAIKLGGLVESDKLPTDVRKRAMEAVDECGRRVTVGDVASRAGLKVTEAQ 120

Query: 116 KALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRV 175
           KALQA+AADTDGFLEVSDEGDVLYVFP +YR+KLA KS R+++EP ++KAK A +Y  RV
Sbjct: 121 KALQAIAADTDGFLEVSDEGDVLYVFPRDYRSKLATKSLRIQIEPFLEKAKGAVDYLTRV 180

Query: 176 LFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPYYY 234
            FGTALIASIVIV+T II +LSS+S+DD+R RRR R +DSGFN FI+P DLFWYWDP YY
Sbjct: 181 SFGTALIASIVIVYTTIIVLLSSRSEDDNRQRRRGRGYDSGFNFFINPVDLFWYWDPNYY 240

Query: 235 RRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAP 294
            RRR + +D+ K MNFI+SVFSFVFG+GDPN+G EE+RW++IG YI S GGVV A+ELAP
Sbjct: 241 SRRRAR-EDEGKGMNFIESVFSFVFGDGDPNEGTEEERWQMIGRYITSRGGVVAADELAP 299

Query: 295 YLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEYVG 350
           YLD+  +    SDESY+LPVLLRFDGQPE+DEEGNILYRFPS QRTA+ S R  +KEYVG
Sbjct: 300 YLDVPSSKSDTSDESYILPVLLRFDGQPELDEEGNILYRFPSLQRTASGSSR--KKEYVG 357

Query: 351 RRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGF 410
            +W D +  +EK F+E+KW+FSKT+ SER M +GLG +NLFGVI+L AML+EMAVTP+GF
Sbjct: 358 -KWFDWVADMEKFFKERKWQFSKTSSSERAMVVGLGAVNLFGVIVLNAMLKEMAVTPSGF 416

Query: 411 LKFVAYIFPLLQL 423
           L FV  I+PLLQ+
Sbjct: 417 LTFVKNIYPLLQV 429

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495901|ref|XP_003516809.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Glycine max]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 291/432 (67%), Positives = 331/432 (76%), Gaps = 35/432 (8%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIP----GSRVLVP 56
           M S+STC T  P       P R         SF   QP+  P + G +P     SRVLV 
Sbjct: 1   MASMSTCITVIPTCGL---PRRLL-------SFTPKQPISLPCVIGGVPKRVWDSRVLV- 49

Query: 57  VAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK 116
                        PG  VESDKLP+DVR R MDAVD C  RVTIGDVA +AGL LN+AQK
Sbjct: 50  -----------ARPGGAVESDKLPSDVRKRTMDAVDGCGGRVTIGDVASRAGLNLNQAQK 98

Query: 117 ALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVL 176
           ALQALAAD DGFLEVS EGDVLYVFP +YR++L AKSFR+K EP  +KAKAA EY IRV 
Sbjct: 99  ALQALAADADGFLEVSGEGDVLYVFPKDYRSRLGAKSFRIKAEPFFEKAKAAGEYLIRVS 158

Query: 177 FGTALIASIVIVFTAIIAIL-SSKSDDDDRGRR-RRSFDSGFNIFISPSDLFWYWDPYYY 234
           FGTALIASIVIV+T IIA++ SS+S++D+RGRR  RS+DSGF  + +P DLFWYWDPYYY
Sbjct: 159 FGTALIASIVIVYTTIIALVTSSRSEEDNRGRRGGRSYDSGFTFYFNPVDLFWYWDPYYY 218

Query: 235 RRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAP 294
           RRRR+Q DDD  KMNFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YIASNGGVV AEELAP
Sbjct: 219 RRRRLQADDD--KMNFIESVFSFVFGDGDPNQGIEEERWKLIGQYIASNGGVVAAEELAP 276

Query: 295 YLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGR 351
           YLDID T     DESY+LPVLLRFDGQP++DEEGNILYRFPS QRT ASQ+  RKEYVGR
Sbjct: 277 YLDIDSTEGIKDDESYILPVLLRFDGQPDVDEEGNILYRFPSLQRT-ASQKSKRKEYVGR 335

Query: 352 RWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFL 411
           RWAD + G+EK F+EKKW+FSKT   ER M IGLGGLNLFGVIILG ML++MAV P+ F+
Sbjct: 336 RWADWV-GIEKFFKEKKWQFSKTGTPERAMVIGLGGLNLFGVIILGTMLKDMAVAPSSFI 394

Query: 412 KFVAYIFPLLQL 423
           KFVA IFPLLQ+
Sbjct: 395 KFVADIFPLLQI 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536751|gb|AAM61083.1| unknown [Arabidopsis thaliana]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/435 (62%), Positives = 335/435 (77%), Gaps = 18/435 (4%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
           M  +STC   +P+ ++   +  +P  I L+ P    SFPR+  L    +S +   +R  +
Sbjct: 1   MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query: 56  PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
            V KA++   V+  + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59  AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
           AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
           RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP 
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
           YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query: 293 APYLDI---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
           APYLD+      M+DESY+LPVLLRFDGQPE+DEEGNILYRFPS QRTA+ S R  RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYRFPSLQRTASGSSR--RKEY 355

Query: 349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
           VG +W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct: 356 VG-KWFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query: 409 GFLKFVAYIFPLLQL 423
           GFL FV  I+PLLQ+
Sbjct: 415 GFLTFVKNIYPLLQI 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740116|emb|CBI30298.3| unnamed protein product [Vitis vinifera]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 305/340 (89%), Gaps = 6/340 (1%)

Query: 88  MDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147
           MDAVDAC  RVTIGDVA K GLKLNEAQKALQALAADT+GFLEVSDEGDVLYVFP +YR+
Sbjct: 1   MDAVDACGGRVTIGDVASKGGLKLNEAQKALQALAADTNGFLEVSDEGDVLYVFPKDYRS 60

Query: 148 KLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGR 207
           KLAAKSFR+K+EP ++KAK+AAEY +RV FGTALIASIV+V+T IIA+LSS+SD+D+RGR
Sbjct: 61  KLAAKSFRIKLEPFVEKAKSAAEYLVRVSFGTALIASIVLVYTTIIALLSSRSDEDNRGR 120

Query: 208 RR-RSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQ 266
           R  RS+DSGF  +++P+DLFWYWDPYYYRRRR+Q +DD   MNFI+SVFSFVFG+GDPNQ
Sbjct: 121 RGGRSYDSGFTFYLNPADLFWYWDPYYYRRRRIQKEDD--GMNFIESVFSFVFGDGDPNQ 178

Query: 267 GIEEKRWKLIGEYIASNGGVVTAEELAPYLDI---DRTMSDESYVLPVLLRFDGQPEIDE 323
           GIE++RWKLIG+YI+SNGGVVTAEELAPYLD+   D  + DESY+LPVLLRF+GQPE+DE
Sbjct: 179 GIEDERWKLIGQYISSNGGVVTAEELAPYLDLETADNNLVDESYILPVLLRFEGQPEVDE 238

Query: 324 EGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAI 383
           EGNILYRFPS QRTA+SQR GRKEYVG+RW D +GGVEK F+EKKW+FSKT+ SER M I
Sbjct: 239 EGNILYRFPSLQRTASSQRSGRKEYVGKRWTDWVGGVEKFFKEKKWQFSKTSNSERAMVI 298

Query: 384 GLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQL 423
           GLGGLNLFGVIILG ML+ +AVTP+GF+ FV+ IFPLLQ+
Sbjct: 299 GLGGLNLFGVIILGTMLKNVAVTPSGFITFVSDIFPLLQI 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2150560	523	AT5G03900 "AT5G03900" [Arabido	0.985	0.797	0.577	2.8e-121

TAIR|locus:2150560 AT5G03900 "AT5G03900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 251/435 (57%), Positives = 311/435 (71%)

Query:     1 MTSISTCFTTTPK-SRFFFTPLRPS-INLKPP-D--SFPRIQPLPFPRISGKIPGSRVLV 55
             M  +STC   +P+ ++   +  +P  I L+ P D  SFPR+  L    +S +   +R  +
Sbjct:     1 MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query:    56 PVAKA-STDVAVG-VGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
              V KA S D   G + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct:    59 AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query:   114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
             AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct:   119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query:   174 RVLFGTALIASIVIVFTAIIAILXXXXXXXXXXXXXXXXXXXX-NIFISPSDLFWYWDPX 232
             RV FGTALIASIVIV+T+IIA+L                     N +I+P DL WYWDP 
Sbjct:   179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query:   233 XXXXXXVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
                    + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct:   239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query:   293 APYLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
             APYLD+  +   M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R  RKEY
Sbjct:   298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355

Query:   349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
             VG+ W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct:   356 VGK-WFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query:   409 GFLKFVAYIFPLLQL 423
             GFL FV  I+PLLQ+
Sbjct:   415 GFLTFVKNIYPLLQI 429


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      423       396   0.00096  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  224 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.02u 0.16s 29.18t   Elapsed:  00:00:02
  Total cpu time:  29.02u 0.16s 29.18t   Elapsed:  00:00:02
  Start:  Sat May 11 01:34:02 2013   End:  Sat May 11 01:34:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GW20	Y5390_ARATH	No assigned EC number	0.6183	0.9858	0.7973	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021608001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (508 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)	•		•	•					0.524
	GSVIVG00038180001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (279 aa)			•	•					0.506
	GSVIVG00036954001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (121 aa)			•						0.506
	GSVIVG00035277001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (97 aa)			•						0.506
	GSVIVG00034898001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (285 aa)			•						0.506
	GSVIVG00028801001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (151 aa)			•						0.506
	GSVIVG00024604001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (207 aa)			•						0.506
	GSVIVG00023602001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (180 aa)			•						0.506
	GSVIVG00017440001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (113 aa)			•						0.506
	GSVIVG00037960001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (267 aa)			•	•					0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	93.35
PRK13239	206	alkylmercury lyase; Provisional	93.07
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	92.4
COG3355	126	Predicted transcriptional regulator [Transcription	92.05
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	91.86
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	91.45
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	90.02
PRK06266	178	transcription initiation factor E subunit alpha; V	89.71
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	88.79
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	88.59
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	88.13
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	87.71
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	86.65
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	86.13
TIGR02844	80	spore_III_D sporulation transcriptional regulator	84.81
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	84.76
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	84.14
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	83.83
PF09743	272	DUF2042: Uncharacterized conserved protein (DUF204	83.32
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	82.5
KOG3341	249	consensus RNA polymerase II transcription factor c	82.21

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=93.35  E-value=0.15  Score=40.35  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=43.1

Q ss_pred             CchhhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499           80 PADVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV  131 (423)
Q Consensus        80 ~~~~~~~im~Ave~lg~-rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV  131 (423)
                      +....++|++.+.+.|. .+|+.|+|.+.|++...+.+.|..|..+  |-++-
T Consensus         4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~--G~V~~   54 (68)
T smart00550        4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKK--GKVCK   54 (68)
T ss_pred             chHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence            34567899999999988 5999999999999999999999999876  44443

Helix-turn-helix-containing domain. Also known as Zab.

>PRK13239 alkylmercury lyase; Provisional

Probab=93.07  E-value=0.16  Score=49.02  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=47.9

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCh
Q 014499           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN  143 (423)
Q Consensus        81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~  143 (423)
                      ..+.-.|++.+. .|.-||+.|+|+.+|.+.+++++.|.+|.     ..+.+++|+|+- ||-
T Consensus        21 ~~~~~~llr~la-~G~pvt~~~lA~~~~~~~~~v~~~L~~l~-----~~~~d~~g~iv~-~pl   76 (206)
T PRK13239         21 ATLLVPLLRLLA-KGRPVSVTTLAAALGWPVEEVEAVLEAMP-----DTEYDEDGRIIG-YGL   76 (206)
T ss_pred             hHHHHHHHHHHH-cCCCCCHHHHHHHhCCCHHHHHHHHHhCC-----CeEECCCCCEEe-ccc
Confidence            356778899988 99999999999999999999999999985     347899999975 643

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=92.40  E-value=0.15  Score=37.94  Aligned_cols=39  Identities=23%  Similarity=0.434  Sum_probs=35.1

Q ss_pred             HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499           86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (423)
Q Consensus        86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad  124 (423)
                      +|++++.+.+...|+.|+|.++|++...+.+-|..|...
T Consensus         7 ~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~   45 (52)
T PF09339_consen    7 RILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEE   45 (52)
T ss_dssp             HHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence            689999999999999999999999999999999998763

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=92.05  E-value=1.1  Score=40.59  Aligned_cols=85  Identities=21%  Similarity=0.246  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE---ec-cCCcEEEEc-ChhhHHHHhhhhHHHhHH
Q 014499           85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE---VS-DEGDVLYVF-PNNYRAKLAAKSFRLKVE  159 (423)
Q Consensus        85 ~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq---Vs-e~GdIlY~F-P~~fRs~l~~Ks~r~rlq  159 (423)
                      -.++.++-+.++..|+-|+|..-+++...|+++|+.|...  |-++   ++ +.|-..|.| |.++-.  ..+-....++
T Consensus        30 v~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~--GlV~Rek~~~~~Ggy~yiY~~i~~ee--~k~~i~~~l~  105 (126)
T COG3355          30 VEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEA--GLVEREKVNLKGGGYYYLYKPIDPEE--IKKKILKDLD  105 (126)
T ss_pred             HHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHc--CCeeeeeeccCCCceeEEEecCCHHH--HHHHHHHHHH
Confidence            3566777778899999999999999999999999999875  3332   33 789999999 988877  3666777888


Q ss_pred             HHHHHHhhhhhHHH
Q 014499          160 PVIDKAKAAAEYSI  173 (423)
Q Consensus       160 ~~~~k~w~v~~yli  173 (423)
                      +|.+++.+.+..+.
T Consensus       106 ~w~~~~~~~i~~~~  119 (126)
T COG3355         106 EWYDKMKQLIEEFE  119 (126)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888887766543

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=91.86  E-value=0.36  Score=43.79  Aligned_cols=52  Identities=27%  Similarity=0.412  Sum_probs=44.1

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-C
Q 014499           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-G  135 (423)
Q Consensus        81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~-G  135 (423)
                      +++..+|++.|++. +|+|++|+++.+|++.+.+++-|..|.+  .|+|..+.. |
T Consensus        11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGasR~Tvk~~lreLVa--~G~l~~~G~~G   63 (127)
T PF06163_consen   11 EELKARIVELVREH-GRITIKQLVAKTGASRNTVKRYLRELVA--RGDLYRHGRSG   63 (127)
T ss_pred             HHHHHHHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHH--cCCeEeCCCcc
Confidence            45667888888775 5899999999999999999999999985  588888775 6

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=91.45  E-value=1.5  Score=35.00  Aligned_cols=78  Identities=21%  Similarity=0.369  Sum_probs=54.3

Q ss_pred             HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc-ChhhH---HHHhhhhHHHhHHH
Q 014499           85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF-PNNYR---AKLAAKSFRLKVEP  160 (423)
Q Consensus        85 ~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F-P~~fR---s~l~~Ks~r~rlq~  160 (423)
                      -+|++.+.+.+..+|+.|+|...|++...+.+-|..|.+  .|.|+-...+. .|.. |+.++   ..+.+.+++....+
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~--~g~l~~~~~~~-~y~l~~~~~~~~~~~~~~~~l~~~~~~   84 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQE--LGYVEQDGQNG-RYRLGPKVLELGQSYLSSLDLREVAKP   84 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHH--CCCeeecCCCC-ceeecHHHHHHHHHHHhcCCHHHHHHH
Confidence            457888887766899999999999999999999999976  48887764333 3555 33222   22333456666666


Q ss_pred             HHHHH
Q 014499          161 VIDKA  165 (423)
Q Consensus       161 ~~~k~  165 (423)
                      .++.+
T Consensus        85 ~l~~l   89 (91)
T smart00346       85 VLEEL   89 (91)
T ss_pred             HHHHH
Confidence            66553

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=90.02  E-value=0.38  Score=40.22  Aligned_cols=49  Identities=22%  Similarity=0.348  Sum_probs=35.7

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 014499           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL  138 (423)
Q Consensus        84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIl  138 (423)
                      --.+++.+.+ |.-||+.++|+.+|.+.+++.+.|.+..     ..|-+++|.||
T Consensus        26 ~r~LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~~p-----~tEyD~~GrIV   74 (77)
T PF12324_consen   26 LRPLLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAAMP-----DTEYDDQGRIV   74 (77)
T ss_dssp             HHHHHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH-T-----TSEEETTSEEE
T ss_pred             HHHHHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHhCC-----CceEcCCCCee
Confidence            3445666666 9999999999999999999998887775     37888888886

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=89.71  E-value=1.9  Score=40.56  Aligned_cols=84  Identities=18%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcC---CceEeccCCcEEEEcChhhHHHHhhhhHHHh
Q 014499           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTD---GFLEVSDEGDVLYVFPNNYRAKLAAKSFRLK  157 (423)
Q Consensus        81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~---G~LqVse~GdIlY~FP~~fRs~l~~Ks~r~r  157 (423)
                      .+..-+|++++.+.| .+|..|+|...|++.+++++.|..|..+-=   -.....++|-+.|.+=-++..+  ....+.+
T Consensus        21 ~~~~~~Vl~~L~~~g-~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w~l~~~~i--~d~ik~~   97 (178)
T PRK06266         21 DEEGFEVLKALIKKG-EVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTWKPELEKL--PEIIKKK   97 (178)
T ss_pred             CccHhHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEEEeCHHHH--HHHHHHH
Confidence            445678999999888 699999999999999999999999998851   1223336888999775555552  2334444


Q ss_pred             HHHHHHHHhh
Q 014499          158 VEPVIDKAKA  167 (423)
Q Consensus       158 lq~~~~k~w~  167 (423)
                      +....+++..
T Consensus        98 ~~~~~~klk~  107 (178)
T PRK06266         98 KMEELKKLKE  107 (178)
T ss_pred             HHHHHHHHHH
Confidence            4455555433

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=88.79  E-value=0.55  Score=37.45  Aligned_cols=53  Identities=21%  Similarity=0.362  Sum_probs=41.1

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEE
Q 014499           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVL  138 (423)
Q Consensus        84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse--~GdIl  138 (423)
                      .++|++.+++...-+|-.|||...|++..+|+.=|..|..+  |.++-++  .|-..
T Consensus         2 ke~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~e--G~V~~~~~~rG~~~   56 (62)
T PF04703_consen    2 KEKILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKE--GKVERSPVRRGKST   56 (62)
T ss_dssp             HHCHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHC--TSEEEES-SSSSS-
T ss_pred             cHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEEecCCCCcce
Confidence            36799999998899999999999999999999999998775  4666544  35443

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=88.59  E-value=0.98  Score=32.70  Aligned_cols=42  Identities=17%  Similarity=0.338  Sum_probs=34.4

Q ss_pred             hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499           82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (423)
Q Consensus        82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad  124 (423)
                      +.+.+|++.+.+.+ ++|+.|+|.+.|++...+.+.|..|..+
T Consensus         3 ~~~~~Il~~l~~~~-~~t~~ela~~~~is~~tv~~~l~~L~~~   44 (48)
T PF13412_consen    3 ETQRKILNYLRENP-RITQKELAEKLGISRSTVNRYLKKLEEK   44 (48)
T ss_dssp             HHHHHHHHHHHHCT-TS-HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence            34678999999955 5999999999999999999999998764

...

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=88.13  E-value=3.1  Score=38.26  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCC---ceEeccCCcEEEEcChhhHHHHhhhhHHHhHHHHH
Q 014499           86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDG---FLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVI  162 (423)
Q Consensus        86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G---~LqVse~GdIlY~FP~~fRs~l~~Ks~r~rlq~~~  162 (423)
                      .|++|+-..| -+|..|+|...|++++++++.|..|..+-=.   +.+-.++|-+.|.+=-++..+  -...+.++....
T Consensus        18 ~Vl~aL~~~~-~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i--~d~Ik~~~~~~~   94 (158)
T TIGR00373        18 LVLFSLGIKG-EFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKA--LDVLKRKLEETA   94 (158)
T ss_pred             HHHHHHhccC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHH--HHHHHHHHHHHH
Confidence            5788887777 6999999999999999999999999988633   556677899999975577774  344555555555


Q ss_pred             HHHhhh
Q 014499          163 DKAKAA  168 (423)
Q Consensus       163 ~k~w~v  168 (423)
                      +++..-
T Consensus        95 ~~lk~~  100 (158)
T TIGR00373        95 KKLREK  100 (158)
T ss_pred             HHHHHH
Confidence            555443

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=87.71  E-value=1.3  Score=33.88  Aligned_cols=53  Identities=26%  Similarity=0.439  Sum_probs=44.6

Q ss_pred             CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 014499           80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG  135 (423)
Q Consensus        80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G  135 (423)
                      ....|-+|++.+ ..+...|++++|...|++.+.+..-|..|..  .|-+++..+|
T Consensus         8 ~~p~R~~Il~~L-~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~--aGli~~~~~g   60 (61)
T PF12840_consen    8 SDPTRLRILRLL-ASNGPMTVSELAEELGISQSTVSYHLKKLEE--AGLIEVEREG   60 (61)
T ss_dssp             TSHHHHHHHHHH-HHCSTBEHHHHHHHHTS-HHHHHHHHHHHHH--TTSEEEEEET
T ss_pred             CCHHHHHHHHHH-hcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCeEEeccC
Confidence            346788899999 6788899999999999999999999999977  5778877766

...

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=86.65  E-value=4.4  Score=29.60  Aligned_cols=60  Identities=25%  Similarity=0.424  Sum_probs=46.8

Q ss_pred             CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC-cEEEEcC
Q 014499           79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFP  142 (423)
Q Consensus        79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G-dIlY~FP  142 (423)
                      +..+.+..|++++.+.+  ++..|+|...|++...+.+.|..|.+.  |.+....++ ...|.+.
T Consensus         4 ~~~~~~~~il~~l~~~~--~~~~ei~~~~~i~~~~i~~~l~~L~~~--g~i~~~~~~~~~~~~~~   64 (78)
T cd00090           4 LSDPTRLRILRLLLEGP--LTVSELAERLGLSQSTVSRHLKKLEEA--GLVESRREGRRVYYSLT   64 (78)
T ss_pred             ccChHHHHHHHHHHHCC--cCHHHHHHHHCcCHhHHHHHHHHHHHC--CCeEEEEeccEEEEEeC
Confidence            34456778899888866  999999999999999999999999764  677765544 4556555

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=86.13  E-value=1.6  Score=33.43  Aligned_cols=40  Identities=13%  Similarity=0.298  Sum_probs=36.2

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (423)
Q Consensus        84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad  124 (423)
                      +..|++.+++. +.+|+.|+|..-|+|...+++.|..|+..
T Consensus         2 ~~~Il~~l~~~-~~~s~~ela~~~~VS~~TiRRDl~~L~~~   41 (57)
T PF08220_consen    2 QQQILELLKEK-GKVSVKELAEEFGVSEMTIRRDLNKLEKQ   41 (57)
T ss_pred             HHHHHHHHHHc-CCEEHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence            46789999886 58999999999999999999999999875

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID

Probab=84.81  E-value=1.1  Score=37.43  Aligned_cols=34  Identities=12%  Similarity=0.081  Sum_probs=31.1

Q ss_pred             hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHH
Q 014499           83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKAL  118 (423)
Q Consensus        83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL  118 (423)
                      -+..|++.+.+  +.+|+.|||..+|+|...+.+.|
T Consensus         7 R~~~I~e~l~~--~~~ti~dvA~~~gvS~~TVsr~L   40 (80)
T TIGR02844         7 RVLEIGKYIVE--TKATVRETAKVFGVSKSTVHKDV   40 (80)
T ss_pred             HHHHHHHHHHH--CCCCHHHHHHHhCCCHHHHHHHh
Confidence            46789999999  99999999999999999998866

Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=84.76  E-value=2.5  Score=30.24  Aligned_cols=49  Identities=20%  Similarity=0.391  Sum_probs=39.2

Q ss_pred             HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEE
Q 014499           87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY  139 (423)
Q Consensus        87 im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY  139 (423)
                      |+..+.  ...+|+.|++...|++...+.+.|..|.++  |-+.....|.-.|
T Consensus         2 il~~l~--~~~~~~~~i~~~l~is~~~v~~~l~~L~~~--g~i~~~~~~~~~~   50 (66)
T smart00418        2 ILKLLA--EGELCVCELAEILGLSQSTVSHHLKKLREA--GLVESRREGKRVY   50 (66)
T ss_pred             HHHHhh--cCCccHHHHHHHHCCCHHHHHHHHHHHHHC--CCeeeeecCCEEE
Confidence            667776  667899999999999999999999999975  6777666454433

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=84.14  E-value=3.4  Score=29.07  Aligned_cols=47  Identities=15%  Similarity=0.319  Sum_probs=38.4

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 014499           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD  133 (423)
Q Consensus        84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse  133 (423)
                      +..+++.+.+.+ .+|+.|+|...|++...+.+.|..|..+  |.++-..
T Consensus         2 ~~~il~~l~~~~-~~s~~~l~~~l~~s~~tv~~~l~~L~~~--g~i~~~~   48 (53)
T smart00420        2 QQQILELLAQQG-KVSVEELAELLGVSEMTIRRDLNKLEEQ--GLLTRVH   48 (53)
T ss_pred             HHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEee
Confidence            356788888765 5999999999999999999999998876  5565443

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=83.83  E-value=2.1  Score=35.79  Aligned_cols=44  Identities=20%  Similarity=0.459  Sum_probs=37.7

Q ss_pred             chhhHHHHHHHHh---cCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499           81 ADVRNRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (423)
Q Consensus        81 ~~~~~~im~Ave~---lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad  124 (423)
                      ..++.+|+++++.   ..-.|.+.+|+.+.|++.++++++|..|..+
T Consensus        46 ~~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~e   92 (102)
T PF08784_consen   46 SPLQDKVLNFIKQQPNSEEGVHVDEIAQQLGMSENEVRKALDFLSNE   92 (102)
T ss_dssp             -HHHHHHHHHHHC----TTTEEHHHHHHHSTS-HHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHhC
Confidence            4578999999999   5667999999999999999999999999875

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms

Probab=83.32  E-value=2.2  Score=42.62  Aligned_cols=57  Identities=18%  Similarity=0.367  Sum_probs=49.7

Q ss_pred             CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 014499           80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL  138 (423)
Q Consensus        80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIl  138 (423)
                      |.-++..|.+.+...|+|+++-|++..-|++.+..|+.+..+..+-. +++.. .||++
T Consensus        53 ~~~L~~EI~~el~~~gGRv~~~dL~~~LnVd~~~ie~~~~~i~~~~~-~~~l~-~geli  109 (272)
T PF09743_consen   53 PEQLEKEIKDELYVHGGRVNLVDLAQALNVDLDHIERRAQEIVKSDK-SLQLV-QGELI  109 (272)
T ss_pred             HHHHHHHHHHHHHHcCCceEHHHHHHhcCcCHHHHHHHHHHHHhCCC-cEEEE-CCEEc
Confidence            45678899999999999999999999999999999999999999877 56544 68864

Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=82.50  E-value=4.1  Score=30.01  Aligned_cols=45  Identities=9%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCce
Q 014499           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFL  129 (423)
Q Consensus        84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~L  129 (423)
                      ..+|++.+.+.+..+|..++|.+.|+|...+++.|..| .+.+..+
T Consensus         2 ~~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L-~~~~~~I   46 (55)
T PF08279_consen    2 QKQILKLLLESKEPITAKELAEELGVSRRTIRRDIKEL-REWGIPI   46 (55)
T ss_dssp             HHHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHH-HHTT-EE
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHH-HHCCCeE
Confidence            35788889666666999999999999999999999999 4444333

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]

Probab=82.21  E-value=3.4  Score=40.99  Aligned_cols=84  Identities=17%  Similarity=0.313  Sum_probs=70.1

Q ss_pred             cCCCcccccCCCCchhh---HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChh
Q 014499           68 VGPGRIVESDKLPADVR---NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN  144 (423)
Q Consensus        68 ~~~~~~v~~~~l~~~~~---~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~  144 (423)
                      ++.||.----++|-+++   ..|+++++.+|| ||+.-+-+.-|-.-.-|.++|..|.++.=+-+.-...+|..|=||..
T Consensus       159 ~~iggK~~vrSVP~ELn~Dht~ILela~~~gy-vt~s~l~~~l~We~~Ra~qaLe~lv~egL~WiD~q~g~e~~YW~ps~  237 (249)
T KOG3341|consen  159 IKIGGKKLVRSVPTELNMDHTVILELAEILGY-VTISLLKANLGWERSRAIQALEHLVKEGLAWIDLQAGDEAAYWFPSL  237 (249)
T ss_pred             EEecCEEeeecCcchhcccHHHHHHHHHhcCc-eeHHHHHHhccchHHHHHHHHHHHHhccceeeeccCCcceeeechhh
Confidence            45566655566676654   579999999999 99999999999999999999999999988888888899999999999


Q ss_pred             hHHHHhhh
Q 014499          145 YRAKLAAK  152 (423)
Q Consensus       145 fRs~l~~K  152 (423)
                      |-......
T Consensus       238 ~~~~~~q~  245 (249)
T KOG3341|consen  238 FTDQYAQR  245 (249)
T ss_pred             hhHHHhhh
Confidence            97755443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	94.19
3f2g_A	220	Alkylmercury lyase; MERB, organomercurial lyase, m	93.95
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	93.68
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	93.44
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	92.45
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	91.18
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	89.5
3r0a_A	123	Putative transcriptional regulator; structural gen	89.4
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	87.08
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	87.08
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	85.39
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	84.86
3cuq_A	234	Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu	84.1
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	83.49
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	82.67
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	82.01
1y0u_A	96	Arsenical resistance operon repressor, putative; s	81.47
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	81.38
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	81.01
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	80.62

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=94.19  E-value=0.069  Score=42.61  Aligned_cols=49  Identities=24%  Similarity=0.339  Sum_probs=42.3

Q ss_pred             hhhHHHHHHHHhc-----CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499           82 DVRNRAMDAVDAC-----NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS  132 (423)
Q Consensus        82 ~~~~~im~Ave~l-----g~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs  132 (423)
                      +-..+|++.+++.     ||.+|+.|+|...|+|...+++.|.+|...  |.|+-+
T Consensus         4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k--G~I~R~   57 (77)
T 2jt1_A            4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV--GVLEKV   57 (77)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred             HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEec
Confidence            4567899999998     999999999999999999999999999875  455443

>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A

Probab=93.95  E-value=0.047  Score=51.69  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhhH
Q 014499           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR  146 (423)
Q Consensus        81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~fR  146 (423)
                      ..+.-.+++.+. .|.-+|+.++|+.+|.+.+++++.|.+|.     .++.+++|+|+. ||-.-|
T Consensus        21 ~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~Ivg-yp~S~~   79 (220)
T 3f2g_A           21 ADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNIIG-YGLTLR   79 (220)
T ss_dssp             HHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSCEEE-SSEESS
T ss_pred             hHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCCEEE-ecCCCC
Confidence            456667788888 99999999999999999999999999985     699999999977 765443

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=93.68  E-value=0.095  Score=39.92  Aligned_cols=51  Identities=10%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 014499           83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG  135 (423)
Q Consensus        83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G  135 (423)
                      .+++|++.+++.+..+|+.|+|.+.|++...+.+.|..|-++  |.++.+..|
T Consensus        11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~--G~I~~~~~G   61 (67)
T 2heo_A           11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE--DRVSSPSPK   61 (67)
T ss_dssp             HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEEEEETT
T ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEecCCCc
Confidence            578999999998888999999999999999999999999765  446655555

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=93.44  E-value=0.098  Score=41.07  Aligned_cols=44  Identities=27%  Similarity=0.447  Sum_probs=38.8

Q ss_pred             HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 014499           85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE  130 (423)
Q Consensus        85 ~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~Lq  130 (423)
                      +.++.-+....+..|+|+||+.-|.++++|+.+|..|-+|  |.|.
T Consensus         6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~--G~LR   49 (68)
T 3i71_A            6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA--GTLR   49 (68)
T ss_dssp             HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEE
T ss_pred             HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc--chhh
Confidence            5677788899999999999999999999999999999886  4444

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=92.45  E-value=0.16  Score=41.51  Aligned_cols=43  Identities=9%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 014499           82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (423)
Q Consensus        82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad  124 (423)
                      +..++|+++++..|.-+..||||..+|++..++.++|.+|-.+
T Consensus        19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkE   61 (80)
T 2lnb_A           19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKE   61 (80)
T ss_dssp             HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            4579999999999999999999999999999999999999865

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=91.18  E-value=0.48  Score=37.99  Aligned_cols=57  Identities=23%  Similarity=0.352  Sum_probs=47.2

Q ss_pred             hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec-----cCCcEEEE
Q 014499           82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-----DEGDVLYV  140 (423)
Q Consensus        82 ~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs-----e~GdIlY~  140 (423)
                      +.+-+|+..+-+.|.++|+.|+|...|++...+.++|..|.++  |-++..     ..|-.+|.
T Consensus        18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~--GlV~~~~~~~~~~g~~v~~   79 (110)
T 1q1h_A           18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ--GFVSYRKTRDKDSGWFIYY   79 (110)
T ss_dssp             STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH--TSCEEEEEC---CCCCEEE
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccCCCceEEEE
Confidence            4677899998778878999999999999999999999999876  556655     56777773

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=89.50  E-value=0.56  Score=37.69  Aligned_cols=61  Identities=11%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHH-HHHHHHHHHHhhcCCceEeccCCcEEEEcChh
Q 014499           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLN-EAQKALQALAADTDGFLEVSDEGDVLYVFPNN  144 (423)
Q Consensus        81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~-~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~  144 (423)
                      ++.+++|++.+++.| ..|+.|+|..-|++.. .+++.|..|..+  |-++-...|-.+|.-...
T Consensus        10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~e--GlV~~~~~gRP~w~LT~~   71 (79)
T 1xmk_A           10 AEIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQ--GDVYRQGTTPPIWHLTDK   71 (79)
T ss_dssp             HHHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHT--TSEEEECSSSCEEEECHH
T ss_pred             hhHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHC--CCEEecCCCCCCeEeCHh
Confidence            367899999999998 6899999999999999 999999999876  566655667677765443

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=89.40  E-value=1.9  Score=35.83  Aligned_cols=85  Identities=14%  Similarity=0.206  Sum_probs=60.4

Q ss_pred             hhhHHHHHHHHhcCCc-eeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec----cCCcEEEEc-ChhhHHHHhhhhHH
Q 014499           82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS----DEGDVLYVF-PNNYRAKLAAKSFR  155 (423)
Q Consensus        82 ~~~~~im~Ave~lg~r-vTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs----e~GdIlY~F-P~~fRs~l~~Ks~r  155 (423)
                      ..+-+|+.++.+.+.. +|+.|+|.+.|++...+.+.|..|...  |-++-.    +.|-..|.| +......  .+-.+
T Consensus        26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~--GlV~r~~~~~d~~~~~~~y~~~~~~~~--~~~i~  101 (123)
T 3r0a_A           26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK--EILQRSQQNLDGGGYVYIYKIYSKNQI--RNIIQ  101 (123)
T ss_dssp             HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEEEECTTSCEEEEEEECCHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEeeCCccCCCcceEEEecCCHHHH--HHHHH
Confidence            3467899999988877 999999999999999999999999864  566532    234466666 3333331  24456


Q ss_pred             HhHHHHHHHHhhhhh
Q 014499          156 LKVEPVIDKAKAAAE  170 (423)
Q Consensus       156 ~rlq~~~~k~w~v~~  170 (423)
                      ..++.|.+.+...+.
T Consensus       102 ~~~~~~~~~~~~~l~  116 (123)
T 3r0a_A          102 KIVQSWADRLGQELK  116 (123)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            667777777665543

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=87.08  E-value=0.74  Score=35.35  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=39.1

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV  131 (423)
Q Consensus        84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV  131 (423)
                      +.+|++.+.+.+ .+|+.|+|...|++...+.+.|..|.++  |-++.
T Consensus         2 r~~Il~~L~~~~-~~s~~eLa~~lgvs~~tv~r~L~~L~~~--GlI~~   46 (81)
T 2htj_A            2 KNEILEFLNRHN-GGKTAEIAEALAVTDYQARYYLLLLEKA--GMVQR   46 (81)
T ss_dssp             HHHHHHHHHHSC-CCCHHHHHHHHTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence            678999998764 6999999999999999999999999875  66764

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=87.08  E-value=0.79  Score=36.64  Aligned_cols=49  Identities=27%  Similarity=0.395  Sum_probs=41.8

Q ss_pred             chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499           81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV  131 (423)
Q Consensus        81 ~~~~~~im~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV  131 (423)
                      .+...+|++.+++.+  .++|+.|+|.+.|++...+++.|..|..+  |.++.
T Consensus         9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~--G~I~~   59 (81)
T 1qbj_A            9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQK   59 (81)
T ss_dssp             HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred             hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe
Confidence            456788999999887  58999999999999999999999999764  55554

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B

Probab=85.39  E-value=1.8  Score=40.34  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             cccCCCC-chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcChhh
Q 014499           74 VESDKLP-ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY  145 (423)
Q Consensus        74 v~~~~l~-~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~FP~~f  145 (423)
                      |++..-. .....+|++.++..| .||+.++|.+-|.+..-|+..|..+-.  .|.|=++++++-+|-||.-|
T Consensus       145 vqs~~~~~~~~~~~il~~~~~~g-~vt~~~la~~l~ws~~~a~e~L~~~e~--~G~l~~D~~~eg~~y~pn~f  214 (218)
T 3cuq_B          145 IELQSHKEEEMVASALETVSEKG-SLTSEEFAKLVGMSVLLAKERLLLAEK--MGHLCRDDSVEGLRFYPNLF  214 (218)
T ss_dssp             EEETTCCGGGGHHHHHHHHHHTS-CBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEESSSCEEEEECGG
T ss_pred             EEcCCCchHHHHHHHHHHHHHCC-CcCHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence            5554332 356788889888754 699999999999999999999988554  68888888777788799655

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=84.86  E-value=1.2  Score=34.80  Aligned_cols=50  Identities=26%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             CchhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 014499           80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV  131 (423)
Q Consensus        80 ~~~~~~~im~Ave~lg--~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqV  131 (423)
                      ..+...+|++++++.+  .++|+.|+|.+.|++...+++.|..|-.+  |.++-
T Consensus        12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~--G~I~~   63 (77)
T 1qgp_A           12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQK   63 (77)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH--TSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe
Confidence            3455688999999988  58999999999999999999999999764  44443

>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A

Probab=84.10  E-value=1.3  Score=42.34  Aligned_cols=69  Identities=17%  Similarity=0.313  Sum_probs=52.1

Q ss_pred             ccccCC--CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEcChhh
Q 014499           73 IVESDK--LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVFPNNY  145 (423)
Q Consensus        73 ~v~~~~--l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse--~GdIlY~FP~~f  145 (423)
                      .|.|..  |.+|. .+|++.++.. +.||+.+++...|.+..-|+..|..|.++  |.+=|++  +||-.|=||.-|
T Consensus       144 ~VqSvp~el~~D~-~~vLela~~~-g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~--GllwvD~q~~ge~~Yw~P~lf  216 (234)
T 3cuq_A          144 LIQSVPAELNMDH-TVVLQLAEKN-GYVTVSEIKASLKWETERARQVLEHLLKE--GLAWLDLQAPGEAHYWLPALF  216 (234)
T ss_dssp             EEECSCCCCCHHH-HHHHHHHTTT-SEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSCEEESSSSSSCEEECTTSS
T ss_pred             EEEeCCCccchHH-HHHHHHHHhc-CcCcHHHHHHHhCCCHHHHHHHHHHHHhC--CCEEEeCCCCCcceeecchhh
Confidence            344443  44443 4477888755 57999999999999999999999997665  6666665  579999999655

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=83.49  E-value=1.9  Score=32.76  Aligned_cols=58  Identities=12%  Similarity=0.275  Sum_probs=46.0

Q ss_pred             chhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEe-c-cCCcEEEE
Q 014499           81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEV-S-DEGDVLYV  140 (423)
Q Consensus        81 ~~~~~~im~Ave~lg-~rvTvgDVAa~a-----GL~l~~Ae~aL~aLAad~~G~LqV-s-e~GdIlY~  140 (423)
                      ...|..|++.+.+.+ ..+|+.|++...     +++...+-+.|..|...  |-++. . ++|...|.
T Consensus        16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~--Glv~~~~~~~~~~~y~   81 (83)
T 2fu4_A           16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA--GIVTRHNFEGGKSVFE   81 (83)
T ss_dssp             CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--TSEEEEECGGGCEEEE
T ss_pred             CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC--CCeEEEeeCCCceEee
Confidence            456788999998876 789999999999     99999999999999876  44443 2 25566664

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=82.67  E-value=1.2  Score=36.25  Aligned_cols=48  Identities=19%  Similarity=0.253  Sum_probs=40.4

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 014499           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS  132 (423)
Q Consensus        81 ~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVs  132 (423)
                      ...+.+|++.+++.|  +|+.|+|.+.|++...+++-|..|..+  |.++..
T Consensus        16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~e--G~I~~~   63 (82)
T 1oyi_A           16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRS--AMVYSS   63 (82)
T ss_dssp             HHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHH--TSSEEC
T ss_pred             HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEeC
Confidence            357889999999766  999999999999999999999999765  444443

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=82.01  E-value=12  Score=29.40  Aligned_cols=63  Identities=19%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcE-EEEc-Chhh
Q 014499           79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV-LYVF-PNNY  145 (423)
Q Consensus        79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdI-lY~F-P~~f  145 (423)
                      |....|-+|+..+ .. +..|+.|+|...|++...+.+.|..|..  .|-++...+|.- .|.. |+..
T Consensus        18 l~~~~r~~IL~~L-~~-~~~~~~ela~~l~is~~tv~~~l~~L~~--~gli~~~~~gr~~~y~l~~~~~   82 (114)
T 2oqg_A           18 LSDETRWEILTEL-GR-ADQSASSLATRLPVSRQAIAKHLNALQA--CGLVESVKVGREIRYRALGAEL   82 (114)
T ss_dssp             TTCHHHHHHHHHH-HH-SCBCHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECSHHH
T ss_pred             hCChHHHHHHHHH-Hc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeeEEecCCEEEEEechHHH
Confidence            3445678899999 33 4599999999999999999999999964  577776666654 3433 4443

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=81.47  E-value=2.3  Score=33.33  Aligned_cols=54  Identities=15%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499           80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF  141 (423)
Q Consensus        80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F  141 (423)
                      ....|.+|++.+ .  +..|++|+|.+.|++...+.+.|..|...  |-++... |  .|..
T Consensus        29 ~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~--Glv~~~~-g--~y~l   82 (96)
T 1y0u_A           29 TNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAG--FCIERVG-E--RWVV   82 (96)
T ss_dssp             SCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-T--EEEE
T ss_pred             CCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEC-C--EEEE
Confidence            345677899999 3  45999999999999999999999999765  7777666 6  5554

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=81.38  E-value=2.6  Score=32.22  Aligned_cols=59  Identities=14%  Similarity=0.332  Sum_probs=46.3

Q ss_pred             CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 014499           80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF  141 (423)
Q Consensus        80 ~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~Gd-IlY~F  141 (423)
                      ....+-+|+.++.+ ++..|+.|+|...|++...+.+.|..|.  ..|-++...+|. ..|..
T Consensus        22 ~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~~~~r~~~y~l   81 (99)
T 3cuo_A           22 SHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQRDAQRILYSI   81 (99)
T ss_dssp             CSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEECSSCEEEEE
T ss_pred             CChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEecCCEEEEEE
Confidence            34667889999865 6689999999999999999999999996  457777665554 44444

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=81.01  E-value=4.5  Score=32.25  Aligned_cols=59  Identities=15%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 014499           79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF  141 (423)
Q Consensus        79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIlY~F  141 (423)
                      |....|-+|+..+.  .+..|++|+|...|++...+.+.|..|.  ..|-++...+|.-+|..
T Consensus        23 l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~   81 (106)
T 1r1u_A           23 LGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKRQGQSMIYS   81 (106)
T ss_dssp             TCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEEEEE
T ss_pred             hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCCEEEEE
Confidence            44567788999997  3558999999999999999999999997  46788877777755543

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=80.62  E-value=7.5  Score=31.59  Aligned_cols=59  Identities=17%  Similarity=0.312  Sum_probs=47.3

Q ss_pred             CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcE-EEEc
Q 014499           79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV-LYVF  141 (423)
Q Consensus        79 l~~~~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdI-lY~F  141 (423)
                      |....|-+|+..+.  .+..|++|+|...|++...+-+-|..|..  .|-++...+|.- .|.-
T Consensus        15 l~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~--~GlV~~~~~gr~~~y~l   74 (118)
T 3f6o_A           15 LADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLED--SGWIRTHKQGRVRTCAI   74 (118)
T ss_dssp             HTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEE
T ss_pred             hCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEEecCCEEEEEE
Confidence            34567889999997  46789999999999999999999999954  577887777764 4444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1u5ta2	68	Vacuolar sorting protein SNF8 {Baker's yeast (Sacc	87.72
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	84.99
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	84.61
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	84.24
d1s6la1	60	Alkylmercury lyase MerB {Escherichia coli [TaxId:	80.04

>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.72  E-value=0.27  Score=37.10  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=49.7

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEcChhh
Q 014499           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVFPNNY  145 (423)
Q Consensus        84 ~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse--~GdIlY~FP~~f  145 (423)
                      ...|+++.+.. +.||+..+-.+.|-+..-|+++|..|..+  |-+=|++  .||..|=||.-|
T Consensus         5 qt~vLe~a~~~-G~Vt~s~l~~~lgW~~~Ra~~aLd~lv~e--Gl~WvD~Q~~~e~~YWfPsl~   65 (68)
T d1u5ta2           5 QTKILEICSIL-GYSSISLLKANLGWEAVRSKSALDEMVAN--GLLWIDYQGGAEALYWDPSWI   65 (68)
T ss_dssp             HHHHHHTTTTT-SCCBHHHHHHHHCCCSHHHHHHHHHHHHT--TSSEEECSSSSSCEEECGGGG
T ss_pred             HHHHHHHHHHc-CceeHHHHHHHhCCCHHHHHHHHHHHHhc--CcEEEecCCCCCceeeChHhh
Confidence            46788999888 57899999999999999999999999885  4445554  479999999765

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.99  E-value=1.1  Score=32.95  Aligned_cols=49  Identities=18%  Similarity=0.303  Sum_probs=42.7

Q ss_pred             HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc
Q 014499           86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD  136 (423)
Q Consensus        86 ~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~Gd  136 (423)
                      +|++.+...+..+|+.|+|.+.|++...+-+=|..|..  -|.|+=+++|.
T Consensus         9 ~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~--~g~l~~~~~g~   57 (75)
T d1mkma1           9 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRKKDKR   57 (75)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECTTSC
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCCC
Confidence            57888999999999999999999999999888888875  47888777775

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=84.61  E-value=0.81  Score=33.19  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 014499           82 DVRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE  134 (423)
Q Consensus        82 ~~~~~im~Ave~lg-~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~  134 (423)
                      .++.+|.++.++.| .--|+.|||...|++..++ +.++.++.+.|=-.+|+++
T Consensus         7 ~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~-~~lL~~l~~~G~lvkI~~d   59 (64)
T d1lvaa3           7 KLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSEL-EELLHYLVREGVLVKINDE   59 (64)
T ss_dssp             HHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHH-HHHHHHHHHTTSEEESSSS
T ss_pred             HHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHH-HHHHHHHHHCCCEEEeccc
Confidence            56789999999988 5579999999999999999 6677777777777777654

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.24  E-value=0.79  Score=32.91  Aligned_cols=52  Identities=8%  Similarity=0.059  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 014499           83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG  135 (423)
Q Consensus        83 ~~~~im~Ave~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~G  135 (423)
                      -+.+|++.+.+..+.+|+.|+|..-|+|...+.+.|.+|.+ .|-.++.+..|
T Consensus         8 R~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~-~G~~I~~~~gG   59 (65)
T d1j5ya1           8 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGYNIVATPRG   59 (65)
T ss_dssp             HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTCCCEEETTE
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence            34678899988888899999999999999999999999964 45556654433

>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MerB N-terminal domain-like
domain: Alkylmercury lyase MerB
species: Escherichia coli [TaxId: 562]

Probab=80.04  E-value=0.24  Score=36.78  Aligned_cols=41  Identities=20%  Similarity=0.269  Sum_probs=34.3

Q ss_pred             hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 014499           93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL  138 (423)
Q Consensus        93 ~lg~rvTvgDVAa~aGL~l~~Ae~aL~aLAad~~G~LqVse~GdIl  138 (423)
                      ..|.-||+.++|+.+|-+.++++++|.++.     .-|-+++|.||
T Consensus        12 A~G~PVs~~~LA~alg~~~~eV~~aL~~~p-----~tEyD~~G~iv   52 (60)
T d1s6la1          12 AKGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNII   52 (60)
T ss_dssp             HTTCCBCHHHHHHHHTCCHHHHHHHHTTCC-----SSCEETTTEEC
T ss_pred             hCCCCcCHHHHHHHhCCCHHHHHHHHHhCC-----CceecCCCCEE
Confidence            468899999999999999999999887776     45667777765