Citrus Sinensis ID: 014518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccEEEEEHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHccccccEEEEHHHHHHHHHHHHHHcccHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEEEEEHHccccHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccccccccccccccHccccccccccccccccccccccccccHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVgnngetyfNTAALVSCVqnfpksrgpvvGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIrpvgghrqvrpsdsssfTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSfflertdpaeeallskpenmepgksnqetdEVILSevedekpkdvdllpaSERRKRIAQLQARLFHAAAEGAVRVkrrrgphrgedfTLTQALIKADFWLIFFSLLLgsgsgltvidnlgqmsqslgydnthIFVSMISIWNFLgrvgggyfSEIIVR
Flexible Loop (DISEMBL)
MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALlskpenmepgksnqeTDEVIlsevedekpkdvdllpasERRKRIAQLQARLFHAaaegavrvkrrrgphrgeDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVR
Low Complexity Region (SEG)
MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHtviiiftvilfvllfipivipiilsfflERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFslllgsgsglTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVR
Disordered region (IsUnstruct)
*****ERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVR***SSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER******************************************************LQARLFHAAAEGAVRVK******RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIV*
Disordered Region (DISOPRED)
***********FNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSF********************************************************************************HRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVR
Disordered Region (DISEMBL)
MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPEN**********DEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVR
Disordered Region (DISPRO)
*GKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER********************************************************ARL****AEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
224060265	422	predicted protein [Populus trichocarpa]	0.997	1.0	0.874	0.0
255536871	589	conserved hypothetical protein [Ricinus	1.0	0.718	0.862	0.0
225451469	591	PREDICTED: uncharacterized protein LOC10	1.0	0.715	0.825	0.0
147853498	591	hypothetical protein VITISV_016786 [Viti	1.0	0.715	0.822	0.0
225451471	591	PREDICTED: uncharacterized protein LOC10	1.0	0.715	0.820	0.0
312282435	579	unnamed protein product [Thellungiella h	0.983	0.718	0.803	0.0
18395988	584	major facilitator protein [Arabidopsis t	0.990	0.717	0.797	0.0
449441700	576	PREDICTED: uncharacterized protein LOC10	1.0	0.734	0.752	0.0
297807437	579	nodulin family protein [Arabidopsis lyra	0.983	0.718	0.791	0.0
1532169	481	similar to a E. coli hypothetical protei	0.990	0.871	0.797	0.0

>gi|224060265|ref|XP_002300113.1| predicted protein [Populus trichocarpa] gi|222847371|gb|EEE84918.1| predicted protein [Populus trichocarpa]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/422 (87%), Positives = 393/422 (93%)

Query: 1   MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
           MGK  ERF  F NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQ+Q+A LGVAK
Sbjct: 1   MGKLHERFAGFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQRQLASLGVAK 60

Query: 61  DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
           DLGDSVGFLAGSL E+LP+WGALLVGA+QN +GYGWVWL+VTGRAPVLPLWAMCILIF+G
Sbjct: 61  DLGDSVGFLAGSLSEILPLWGALLVGAVQNLVGYGWVWLVVTGRAPVLPLWAMCILIFIG 120

Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
           NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+Y  IH+PDHA+LIFMV
Sbjct: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYATIHSPDHASLIFMV 180

Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
           AVGPAMVVIALMFI+RPVGGHRQVRPSD +SFTF+Y VCLLLAAYLMGVML+EDLVDL+H
Sbjct: 181 AVGPAMVVIALMFIVRPVGGHRQVRPSDGTSFTFVYGVCLLLAAYLMGVMLLEDLVDLSH 240

Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
           TV+IIFTV+LFVLL IPIVIP+ LSFFL+  DP EE LL +    EPGKS QET EVI S
Sbjct: 241 TVVIIFTVVLFVLLLIPIVIPVSLSFFLDPRDPVEEPLLPETPKQEPGKSGQETPEVIFS 300

Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
           EVEDEKPK+VDLLPASER+KRIAQLQA+LF AAAEGAVRVKRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERQKRIAQLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIK 360

Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
           ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420

Query: 421 IV 422
           IV
Sbjct: 421 IV 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis]

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/423 (86%), Positives = 394/423 (93%)

Query: 1   MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
           MG+ QER  +F NNRWLVFVAAMWIQSCAG+GYLFGSISPVIKSSLNYNQ+Q+A LGVAK
Sbjct: 1   MGRLQERLYAFINNRWLVFVAAMWIQSCAGVGYLFGSISPVIKSSLNYNQRQLASLGVAK 60

Query: 61  DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
           DLGDSVGFLAGSL E+LP+WGALLVGALQN +GYGWVWL+VTG+APVLPLW MCILIFVG
Sbjct: 61  DLGDSVGFLAGSLSEILPLWGALLVGALQNLVGYGWVWLVVTGKAPVLPLWVMCILIFVG 120

Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
           NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+P+HA+LIFMV
Sbjct: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPNHASLIFMV 180

Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
           AVGPAMVV+ LMFIIRPVGGHRQVRPSD +SFTF+YSVCLLLAAYLMGVML+EDLVDL+H
Sbjct: 181 AVGPAMVVVTLMFIIRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGVMLLEDLVDLSH 240

Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
           T+II+FTV+LFVLL +PIVIPI LSFF E  DPAEE LL + E  E GKS Q+  EVILS
Sbjct: 241 TLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQEAGKSEQDGHEVILS 300

Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
           EVEDEKPK+VDLLPASER+KRIAQLQ +LF AAAEGAVR+KRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRGPHRGEDFTLMQALIK 360

Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
           ADFWLIF SLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI
Sbjct: 361 ADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420

Query: 421 IVR 423
           IVR
Sbjct: 421 IVR 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/423 (82%), Positives = 380/423 (89%)

Query: 1   MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
           M +  ERF +F NNRWLVFVAAMWIQSCAGIGYLFGS+SPV+KSSLNYNQ+QIA+LGVAK
Sbjct: 1   MIRLPERFRAFLNNRWLVFVAAMWIQSCAGIGYLFGSLSPVMKSSLNYNQRQIAKLGVAK 60

Query: 61  DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
           D+GDS+GF  GSLCE+LP+W  LLVGALQNFIGYGWVWLIVT R P LPLWA+CILIFVG
Sbjct: 61  DIGDSIGFWIGSLCEILPLWAVLLVGALQNFIGYGWVWLIVTHRVPTLPLWAICILIFVG 120

Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
            NGETYFNT  LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PDHA+L+FMV
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLVFMV 180

Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
           AVGP MVV ALMFI+RPVGGHRQVRP+D  SFTFIY VCLLLAAYLMGVMLV+DLV L+H
Sbjct: 181 AVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLVQDLVHLSH 240

Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
           TV+ IFT ILFVL+  PIVIP+ LSFF E   P  EALL++P+  EPGKS Q+  EVI S
Sbjct: 241 TVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQDATEVIFS 300

Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
           EVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIK 360

Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
           ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+GGGYFSE+
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRIGGGYFSEM 420

Query: 421 IVR 423
           IVR
Sbjct: 421 IVR 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/423 (82%), Positives = 379/423 (89%)

Query: 1   MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
           M +  ER  +F NNRWLVFVAAMWIQSCAGIGYLFGS+SPV+KSSLNYNQ+QIA+LGVAK
Sbjct: 1   MIRLPERXRAFXNNRWLVFVAAMWIQSCAGIGYLFGSLSPVMKSSLNYNQRQIAKLGVAK 60

Query: 61  DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
           D+GDS+GF  GSLCE+LP+W  LLVGALQNFIGYGWVWLIVT R P LPLWA+CILIFVG
Sbjct: 61  DIGDSIGFWIGSLCEILPLWAVLLVGALQNFIGYGWVWLIVTHRVPTLPLWAICILIFVG 120

Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
            NGETYFNT  LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PDHA+L+FMV
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLVFMV 180

Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
           AVGP MVV ALMFI+RPVGGHRQVRP+D  SFTFIY VCLLLAAYLMGVMLV+DLV L+H
Sbjct: 181 AVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLVQDLVHLSH 240

Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
           TV+ IFT ILFVL+  PIVIP+ LSFF E   P  EALL++P+  EPGKS Q+  EVI S
Sbjct: 241 TVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQDATEVIFS 300

Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
           EVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIK 360

Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
           ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+GGGYFSE+
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRIGGGYFSEM 420

Query: 421 IVR 423
           IVR
Sbjct: 421 IVR 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera]

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/423 (82%), Positives = 382/423 (90%)

Query: 1   MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
           M +  ERF +FFNNRWLVFVAAMWIQSCAGIGYLFGS+SPVIKSSLNYNQ+QIARLGVAK
Sbjct: 1   MIRLPERFRAFFNNRWLVFVAAMWIQSCAGIGYLFGSLSPVIKSSLNYNQRQIARLGVAK 60

Query: 61  DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
           D+GDSVGF  GSLCE+LP+W ALL+GALQN IGYGWVWLI+T R P LPLWA+CILIFVG
Sbjct: 61  DIGDSVGFWIGSLCEILPLWVALLIGALQNLIGYGWVWLIITHRVPTLPLWAICILIFVG 120

Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
            NGETYFNT  LVSCVQNFPKSRGPVVGILKGF+GL GAILTQ+YTMIH+PDHA+L+FMV
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFSGLSGAILTQIYTMIHSPDHASLVFMV 180

Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
           AVGP MVV ALMFI+RPVGGHRQVRP+D  SFTFIY VCL+LAAYLMGVML++DLVDL+H
Sbjct: 181 AVGPTMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLVLAAYLMGVMLLQDLVDLSH 240

Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
           TV+ IFT ILFVL+ +PIVIP+ LSF  E   P  EALL++P+  EPGKS Q+  EVI S
Sbjct: 241 TVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKEEPGKSEQDATEVIFS 300

Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
           E+EDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGP RGEDFTL QALIK
Sbjct: 301 ELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPRRGEDFTLMQALIK 360

Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
           ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGR+GGGYFSE+
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRIGGGYFSEM 420

Query: 421 IVR 423
           IVR
Sbjct: 421 IVR 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282435|dbj|BAJ34083.1| unnamed protein product [Thellungiella halophila]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/422 (80%), Positives = 381/422 (90%), Gaps = 6/422 (1%)

Query: 5   QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
           +E+FVSF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK++ARLGVAKDLGD
Sbjct: 6   REKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELARLGVAKDLGD 65

Query: 65  SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
           SVGFLAGSL E+LP+W ALLVGA+QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct: 66  SVGFLAGSLSEILPLWAALLVGAVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125

Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
           TYFNT +LVS V NFPKSRGPVVGILKGFAGLGGAIL+Q+YT +H+PD A+LI MVAVGP
Sbjct: 126 TYFNTGSLVSGVHNFPKSRGPVVGILKGFAGLGGAILSQIYTTMHSPDPASLIVMVAVGP 185

Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
           A+VV  LMF IRPVGGHRQ+RP+D +SFTFIY VC+LLAAYLM VML+EDLV ++H +I 
Sbjct: 186 AVVVAFLMFFIRPVGGHRQIRPTDGASFTFIYGVCILLAAYLMAVMLIEDLVVVSHNIIT 245

Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSNQETDEVILSE 301
           +FT++LFV+L +PI++PI+ SFF E   PA   EE L+ K EN EPG   Q+T ++ILSE
Sbjct: 246 VFTIVLFVILVVPILVPIMTSFFTESNAPADTVEEPLVPKRENQEPG---QQTPDLILSE 302

Query: 302 VEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKA 361
           VEDEKPK++DLLPASER KRIA LQARL  AAAEGAVRVKR RGPHRGEDFTLTQAL+KA
Sbjct: 303 VEDEKPKEMDLLPASERHKRIAHLQARLMQAAAEGAVRVKRHRGPHRGEDFTLTQALVKA 362

Query: 362 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEII 421
           DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE+I
Sbjct: 363 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSELI 422

Query: 422 VR 423
           VR
Sbjct: 423 VR 424

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395988|ref|NP_566157.1| major facilitator protein [Arabidopsis thaliana] gi|6091732|gb|AAF03444.1|AC010797_20 unknown protein [Arabidopsis thaliana] gi|6513938|gb|AAF14842.1|AC011664_24 unknown protein [Arabidopsis thaliana] gi|22136036|gb|AAM91600.1| unknown protein [Arabidopsis thaliana] gi|23197760|gb|AAN15407.1| unknown protein [Arabidopsis thaliana] gi|332640216|gb|AEE73737.1| major facilitator protein [Arabidopsis thaliana]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/424 (79%), Positives = 376/424 (88%), Gaps = 5/424 (1%)

Query: 5   QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
           +ER  SF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ++RLGVAKDLGD
Sbjct: 6   RERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGD 65

Query: 65  SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
           SVGFLAG+L E+LP+W ALLVG++QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct: 66  SVGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125

Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
           TYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D A+LIFMVAV P
Sbjct: 126 TYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAP 185

Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
           ++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLVED +DL+H++II
Sbjct: 186 SVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIII 245

Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSN--QETDEVIL 299
            FTV+LF +L +PI IPI  S F   TDP    EE LL   +  +PG+S       E+I 
Sbjct: 246 AFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIF 305

Query: 300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
           SEVEDEKPK+VDLLPA ER KRIAQLQA+L  AAAEGAVRVKRRRGPHRGEDFTLTQAL+
Sbjct: 306 SEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALV 365

Query: 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
           KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE
Sbjct: 366 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSE 425

Query: 420 IIVR 423
           +IVR
Sbjct: 426 LIVR 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441700|ref|XP_004138620.1| PREDICTED: uncharacterized protein LOC101211655 [Cucumis sativus]

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/424 (75%), Positives = 364/424 (85%), Gaps = 1/424 (0%)

Query: 1   MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
           MG++ ++ V+F NNRWLVFVAA+W+QS AGIGYLFGSISP+IK++L+YNQ+QI+RLGVAK
Sbjct: 1   MGRWNDKLVAFINNRWLVFVAAIWLQSWAGIGYLFGSISPIIKTNLSYNQRQISRLGVAK 60

Query: 61  DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
           DLGDSVGFLA +L E+LP WG+LLVGA+ NF+GYGWVWLIVTGRAPVLPLWAMC L+F+G
Sbjct: 61  DLGDSVGFLAATLTEILPFWGSLLVGAIHNFVGYGWVWLIVTGRAPVLPLWAMCALVFIG 120

Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
            NGETYFNT +LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ Y + H+P+ ANLIFMV
Sbjct: 121 TNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQTYAIFHSPESANLIFMV 180

Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
           AVGPA+V I +MF IRPV GHRQVRPSD  SFT +Y VCLLLAAYLMGVML+EDLV L+ 
Sbjct: 181 AVGPALVAIGVMFFIRPVAGHRQVRPSDGMSFTSVYGVCLLLAAYLMGVMLIEDLVTLSP 240

Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAE-EALLSKPENMEPGKSNQETDEVIL 299
            VI IFTV++FV+L  P  IP+ L+   E T  AE EALL   E  EP ++  + +EVI 
Sbjct: 241 IVITIFTVVMFVILLTPFFIPVSLTLSSEATTYAEQEALLPPSEKEEPARTEPDGNEVIF 300

Query: 300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
           SEVEDEK +  DLLPASER+KRIAQLQA+L  AAAEGAVRVKRR+GP RGEDFTL QALI
Sbjct: 301 SEVEDEKSEGEDLLPASERQKRIAQLQAKLLQAAAEGAVRVKRRKGPRRGEDFTLGQALI 360

Query: 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
           KADFWLIF S LLGSG+GLTVIDNLGQMSQSLGYDNTHIFVS+ISIWNFLGRVGGGY SE
Sbjct: 361 KADFWLIFSSHLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSLISIWNFLGRVGGGYLSE 420

Query: 420 IIVR 423
           I+VR
Sbjct: 421 IVVR 424

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807437|ref|XP_002871602.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317439|gb|EFH47861.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/422 (79%), Positives = 380/422 (90%), Gaps = 6/422 (1%)

Query: 5   QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
           +E+FVSF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK++ARLGVAKDLGD
Sbjct: 6   REKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELARLGVAKDLGD 65

Query: 65  SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
           SVGF+AG+L E+LP+W ALLVGA+QN IGYGWVWLI TGRAP+LPLWAMC+LIFVGNNGE
Sbjct: 66  SVGFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLITTGRAPILPLWAMCVLIFVGNNGE 125

Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
           TYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ + A+LI MVAV P
Sbjct: 126 TYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTP 185

Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
           A+VV+ LMF IRPVGGH+Q+RPSD +SFTFIY VCLLLAAYLM VML++DLV ++H VI 
Sbjct: 186 AVVVVCLMFFIRPVGGHKQIRPSDGASFTFIYGVCLLLAAYLMAVMLIQDLVVVSHNVIT 245

Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSNQETDEVILSE 301
           +FT++LFV+L +PI++PI+ SFF E  +P    EE L+ K E+ EPG    +T ++ILSE
Sbjct: 246 MFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPG---MQTPDLILSE 302

Query: 302 VEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKA 361
           VEDEKPKDVDLLPASER KRIA LQA+L  AAAEGAVRVKRRRGPHRGEDFTLTQAL+KA
Sbjct: 303 VEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVKRRRGPHRGEDFTLTQALVKA 362

Query: 362 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEII 421
           DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+ VSMISIWNFLGR+GGGYFSE++
Sbjct: 363 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELV 422

Query: 422 VR 423
           VR
Sbjct: 423 VR 424

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1532169|gb|AAB07879.1| similar to a E. coli hypothetical protein F402 encoded by GenBank Accession Number S47768 [Arabidopsis thaliana]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/424 (79%), Positives = 376/424 (88%), Gaps = 5/424 (1%)

Query: 5   QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
           +ER  SF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ++RLGVAKDLGD
Sbjct: 6   RERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGD 65

Query: 65  SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
           SVGFLAG+L E+LP+W ALLVG++QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct: 66  SVGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125

Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
           TYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D A+LIFMVAV P
Sbjct: 126 TYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAP 185

Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
           ++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLVED +DL+H++II
Sbjct: 186 SVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIII 245

Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSN--QETDEVIL 299
            FTV+LF +L +PI IPI  S F   TDP    EE LL   +  +PG+S       E+I 
Sbjct: 246 AFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIF 305

Query: 300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
           SEVEDEKPK+VDLLPA ER KRIAQLQA+L  AAAEGAVRVKRRRGPHRGEDFTLTQAL+
Sbjct: 306 SEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALV 365

Query: 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
           KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE
Sbjct: 366 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSE 425

Query: 420 IIVR 423
           +IVR
Sbjct: 426 LIVR 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.990	0.717	0.738	8.7e-166
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.983	0.718	0.727	5.5e-164
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.527	0.412	0.619	3.7e-99
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.527	0.412	0.619	3.7e-99
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.539	0.395	0.437	1.3e-65
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.548	0.386	0.423	1.4e-60
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.546	0.423	0.380	5.4e-59
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.520	0.392	0.363	7.8e-56
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.515	0.384	0.35	1.6e-53
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.539	0.434	0.345	9.8e-50

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1613 (572.9 bits), Expect = 8.7e-166, P = 8.7e-166
 Identities = 313/424 (73%), Positives = 346/424 (81%)

Query:     5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
             +ER  SF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ++RLGVAKDLGD
Sbjct:     6 RERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGD 65

Query:    65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
             SVGFLAG+L E+LP+W ALLVG++QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct:    66 SVGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125

Query:   125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
             TYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D A+LIFMVAV P
Sbjct:   126 TYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAP 185

Query:   185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHXXXX 244
             ++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLVED +DL+H    
Sbjct:   186 SVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIII 245

Query:   245 XXXXXXXXXXXXXXXXXXXXXXXXERTDPA---EEALLSKPENMEPGKSN--QETDEVIL 299
                                       TDP    EE LL   +  +PG+S       E+I 
Sbjct:   246 AFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIF 305

Query:   300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
             SEVEDEKPK+VDLLPA ER KRIAQLQA+L  AAAEGAVRVKRRRGPHRGEDFTLTQAL+
Sbjct:   306 SEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALV 365

Query:   360 KADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
             KADFWLIFF          TVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE
Sbjct:   366 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSE 425

Query:   420 IIVR 423
             +IVR
Sbjct:   426 LIVR 429

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 1596 (566.9 bits), Expect = 5.5e-164, P = 5.5e-164
 Identities = 307/422 (72%), Positives = 347/422 (82%)

Query:     5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
             +E+FVSF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK+++RLGVAKDLGD
Sbjct:     6 REKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGD 65

Query:    65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
             SVGF+AG+L E+LP+W ALLVGA+QN IGYGWVWLIVTGRAP+LPLWAMC+LIFVGNNGE
Sbjct:    66 SVGFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGE 125

Query:   125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
             TYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ + A+LI MVAV P
Sbjct:   126 TYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTP 185

Query:   185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHXXXX 244
             A+VV+ LMF IRPVGGH+Q+RP+D +SFTFIY VCLLLAAYLM VML++DLV ++H    
Sbjct:   186 AVVVVCLMFFIRPVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVIT 245

Query:   245 XXXXXXXXXXXXXXXXXXXXXXXXERTDP---AEEALLSKPENMEPGKSNQETDEVILSE 301
                                     E  +P    EE L+ K E+ EPG    +T ++ILSE
Sbjct:   246 VFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGL---QTPDLILSE 302

Query:   302 VEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKA 361
             VEDEKPKDVDLLPASER KRIA LQA+L  AAAEGAVRV RRRGPHRGEDFTLTQAL+KA
Sbjct:   303 VEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKA 362

Query:   362 DFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEII 421
             DFWLIFF          TVIDNLGQMSQSLGYDNTH+ VSMISIWNFLGR+GGGYFSE++
Sbjct:   363 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELV 422

Query:   422 VR 423
             VR
Sbjct:   423 VR 424

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
 Identities = 143/231 (61%), Positives = 182/231 (78%)

Query:    13 NNRWLVFVAAMWIQSCAGIGYLFG-SISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAG 71
             N+RWLVFV AMW+QS AG+GYLFG S+SP IK+SL YNQKQIA LGVAK+LGD++GF++G
Sbjct:    14 NDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSG 73

Query:    72 SLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAA 131
             +L EV P W  LLVGA QN  GYG VWL+VTG+ P LPLW + + IFVG NGETY+NTA+
Sbjct:    74 ALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTAS 133

Query:   132 LVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDH-ANLIFMVAVGPAMVVIA 190
             LVSC+ NFP+SRGPVVGILKGF+GL GAILTQVY M + P H +++I MVA+GP +VV+A
Sbjct:   134 LVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFN-PSHDSSVILMVALGPPVVVLA 192

Query:   191 LMFIIRPVGGHRQVRP---SDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDL 238
             L+FI+RPV   R  R    SD   F  IY  C++LA YL+G+++++ + D+
Sbjct:   193 LLFIVRPV--ERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDM 241

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
 Identities = 143/231 (61%), Positives = 182/231 (78%)

Query:    13 NNRWLVFVAAMWIQSCAGIGYLFG-SISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAG 71
             N+RWLVFV AMW+QS AG+GYLFG S+SP IK+SL YNQKQIA LGVAK+LGD++GF++G
Sbjct:    14 NDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSG 73

Query:    72 SLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAA 131
             +L EV P W  LLVGA QN  GYG VWL+VTG+ P LPLW + + IFVG NGETY+NTA+
Sbjct:    74 ALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTAS 133

Query:   132 LVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDH-ANLIFMVAVGPAMVVIA 190
             LVSC+ NFP+SRGPVVGILKGF+GL GAILTQVY M + P H +++I MVA+GP +VV+A
Sbjct:   134 LVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFN-PSHDSSVILMVALGPPVVVLA 192

Query:   191 LMFIIRPVGGHRQVRP---SDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDL 238
             L+FI+RPV   R  R    SD   F  IY  C++LA YL+G+++++ + D+
Sbjct:   193 LLFIVRPV--ERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDM 241

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
 Identities = 101/231 (43%), Positives = 145/231 (62%)

Query:     7 RF-VSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS 65
             RF + FFN RW +  A+  I +CAG  YLFG+ S  IKS+L Y+Q  +  LG  KDLG +
Sbjct:     8 RFLIHFFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGAN 67

Query:    66 VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGET 125
             VG L+G + EV P W  L +G+  NF+GY  +WL VTG+     +W MC+ I +G N + 
Sbjct:    68 VGVLSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQN 127

Query:   126 YFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPA 185
             + NT ALV+CV+NFP+SRG ++G+LKG+ GL GAI TQ+Y  I+  D  +LI ++A  PA
Sbjct:   128 FANTGALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPA 187

Query:   186 MVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLV 236
              V +  +++IR     RQ R   S  + F+Y + + LA +LM + + E  V
Sbjct:   188 AVSLVFVYLIREKKVVRQ-RNELSVFYQFLY-ISIFLALFLMAMNIAEKQV 236

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
 Identities = 99/234 (42%), Positives = 137/234 (58%)

Query:     2 GKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKD 61
             G  +   +     RW +F  ++ I S AG  Y+FG  S  IK +L Y+Q  +  L   KD
Sbjct:     8 GSMKSLTIQILTGRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKD 67

Query:    62 LGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGN 121
             LG +VG LAG L EV P W  LL+GA+ NF GY  +WL VT R     +W MC+ I VG 
Sbjct:    68 LGANVGVLAGLLNEVTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGA 127

Query:   122 NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVA 181
             N +++ NT +LV+CV+NFP+SRG V+GILKG+ GL GAI+TQ+Y   +  D   LI M+ 
Sbjct:   128 NSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIG 187

Query:   182 VGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDL 235
               PA+V  A +  IR +   RQ        + F+Y + L LA +LM V+++  L
Sbjct:   188 WLPAIVSFAFLRTIRIMKVKRQTNEL-KVFYNFLY-ISLGLATFLMVVIIINKL 239

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 89/234 (38%), Positives = 133/234 (56%)

Query:     1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
             MG FQ    S    +WL FV A+W+QS +G  Y F + S  +KS +N NQ ++  L VAK
Sbjct:     1 MG-FQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAK 59

Query:    61 DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
             D+G + G LAG   + LP    LL+G  +  +GYG  WL+V+     +P W MCI + +G
Sbjct:    60 DVGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMG 119

Query:   121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
              N  T+ NTA LV+C++NF ++RGPV GILKG+ GL  AI T + T + + D A+ + ++
Sbjct:   120 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLL 179

Query:   181 AVGPAMVVIALMFIIR--PVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 232
             AV P  V +  +F +R  P          ++  FT    V +++A YL    ++
Sbjct:   180 AVVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDII 233

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 80/220 (36%), Positives = 128/220 (58%)

Query:    16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCE 75
             W+   AA W+Q  AG G  F   S  +KS L ++Q+Q+  LGVA DLG+++G L G    
Sbjct:    14 WVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGLLPGYASN 73

Query:    76 VLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSC 135
              LP W  LL+GA   F+G+G +WL V+     LP W + + + +  N  ++F TA+LV+ 
Sbjct:    74 KLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFGTASLVTN 133

Query:   136 VQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFII 195
             ++NFP SRGPV G+LKG+ G+ GA  T +++M+      +L+  + VG  ++ + +M+ I
Sbjct:   134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVICLTVMYFI 193

Query:   196 RPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDL 235
             RP        PS+   F F+    +L AAYL+   ++ ++
Sbjct:   194 RPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEV 233

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 77/220 (35%), Positives = 129/220 (58%)

Query:    15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLC 74
             +WL FV A+W+QS +G  Y F + S  +KS +N  Q ++  L VAKD+G + G LAG   
Sbjct:    16 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75

Query:    75 EVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVS 134
             + L     LL+G+ +  +GYG  WL+V+     +P W MC+ + +G N  T+ NTA LV+
Sbjct:    76 DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135

Query:   135 CVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFI 194
             C++NF ++RGPV GILKG+ GL  AI T +   + + D A+ + +++V P  V +  +F 
Sbjct:   136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFF 195

Query:   195 IRPVGGHRQ-VRPSDSSSFTFIYS-VCLLLAAYLMGVMLV 232
             +R +         ++ S +  +++ V +++A YL    ++
Sbjct:   196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDII 235

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 84/243 (34%), Positives = 138/243 (56%)

Query:     9 VSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGF 68
             + F N +W+   A++WIQS +G  Y FG  S V+KSS +Y+Q  +  + V KD+G +VG 
Sbjct:     1 MEFANTKWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGI 60

Query:    69 LAGSLCEVLPI------------WGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCIL 116
             L+G     +              W  + VG LQ F+GYG++W+  +G  P  P+  MC+ 
Sbjct:    61 LSGLFYTAVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCLF 120

Query:   117 IFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANL 176
             +F   + + +FNTA +V+ V+NF    G  VGI+KG+ GL GAIL Q+Y +    D  N 
Sbjct:   121 MFFAGHCQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNY 180

Query:   177 IFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLV 236
             I ++AV P+++++ LM  +R    +  V   D      + ++ L++  YLM V+LVE+++
Sbjct:   181 ILLLAVVPSLLILTLMPFVRT---YDTVIAGDKKHLNGLSAISLIIVTYLMVVILVENII 237

Query:   237 DLN 239
              ++
Sbjct:   238 GMS 240

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I3108 hypothetical protein (422 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	1e-110
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	2e-05
PTZ00207	591	PTZ00207, PTZ00207, hypothetical protein; Provisio	0.001

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  325 bits (834), Expect = e-110
 Identities = 111/248 (44%), Positives = 155/248 (62%)

Query: 15  RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLC 74
           RWL  VAA+WIQS AG  Y F   S  +KSSL Y+Q Q+  LGVAKDLG + G+L+G   
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 75  EVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVS 134
           E LP W  LLVGA   F+GYG  WL VTG+ P LP W +C+ I +  N   +FNTA+LV+
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 135 CVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFI 194
           C++NFP+SRG V+GILKG+AGL  AI TQ+YT I   D ++L+ + A+ P +V +  ++ 
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 195 IRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLL 254
           IRP  G    + S+S  F     + + LA YL+ + ++    DL+         I+ +LL
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240

Query: 255 FIPIVIPI 262
            +P+ +PI
Sbjct: 241 LVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 348 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISI 405
             +D+T+ + L    FW+++ S  L + SGL +I       QSLG  +    + VS+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251

Query: 406 WNFLGRVGGGYFSEIIVR 423
           +N  GR   G  S+ I R
Sbjct: 252 FNGGGRPFLGALSDKIGR 269

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 123 GETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV 164
           G   F+  A+V+ +  FP +RG VV I+K F GLG AIL  +
Sbjct: 133 GCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSI 174

Length = 591

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	100.0
PTZ00207	591	hypothetical protein; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.63
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.38
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.19
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.17
TIGR00895	398	2A0115 benzoate transport.	99.13
PLN00028	476	nitrate transmembrane transporter; Provisional	99.12
TIGR00893	399	2A0114 d-galactonate transporter.	99.09
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.09
PRK11663	434	regulatory protein UhpC; Provisional	99.07
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.03
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.01
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.99
PRK03699	394	putative transporter; Provisional	98.97
PRK09705	393	cynX putative cyanate transporter; Provisional	98.94
PRK03545	390	putative arabinose transporter; Provisional	98.93
PRK12307	426	putative sialic acid transporter; Provisional	98.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.88
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.8
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.77
TIGR00891	405	2A0112 putative sialic acid transporter.	98.75
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.74
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.72
TIGR00898	505	2A0119 cation transport protein.	98.65
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.64
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.54
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.49
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.46
PRK10091	382	MFS transport protein AraJ; Provisional	98.45
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.44
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.44
TIGR00900	365	2A0121 H+ Antiporter protein.	98.43
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.43
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.4
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.4
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.37
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.35
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.33
PRK05122	399	major facilitator superfamily transporter; Provisi	98.32
PRK11043	401	putative transporter; Provisional	98.32
PRK10504	471	putative transporter; Provisional	98.29
PRK15075	434	citrate-proton symporter; Provisional	98.29
PRK12382	392	putative transporter; Provisional	98.26
PRK03893	496	putative sialic acid transporter; Provisional	98.25
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.25
TIGR00805	633	oat sodium-independent organic anion transporter.	98.22
PRK03633	381	putative MFS family transporter protein; Provision	98.22
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.17
PRK10133	438	L-fucose transporter; Provisional	98.17
KOG2532	466	consensus Permease of the major facilitator superf	98.16
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.1
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.1
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.03
KOG2533	495	consensus Permease of the major facilitator superf	97.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.96
PRK10054	395	putative transporter; Provisional	97.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.81
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.81
KOG2563	480	consensus Permease of the major facilitator superf	97.7
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.63
PRK09528	420	lacY galactoside permease; Reviewed	97.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.54
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.51
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.46
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.43
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.43
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.4
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.4
PRK10489	417	enterobactin exporter EntS; Provisional	97.38
PRK10489	417	enterobactin exporter EntS; Provisional	97.35
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.32
PRK10642	490	proline/glycine betaine transporter; Provisional	97.3
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.3
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.28
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.26
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.21
PRK15011	393	sugar efflux transporter B; Provisional	97.21
PLN00028	476	nitrate transmembrane transporter; Provisional	97.2
PRK10642	490	proline/glycine betaine transporter; Provisional	97.2
PRK03545	390	putative arabinose transporter; Provisional	97.18
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.16
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.16
PRK09874	408	drug efflux system protein MdtG; Provisional	97.11
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.1
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.07
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.05
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.04
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.03
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.96
PRK09952	438	shikimate transporter; Provisional	96.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.93
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.92
TIGR00901	356	2A0125 AmpG-related permease.	96.91
PRK09528	420	lacY galactoside permease; Reviewed	96.9
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.9
PRK03893	496	putative sialic acid transporter; Provisional	96.89
TIGR00901	356	2A0125 AmpG-related permease.	96.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.88
PRK15075	434	citrate-proton symporter; Provisional	96.85
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.83
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.81
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.79
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.79
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.72
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.65
TIGR00900	365	2A0121 H+ Antiporter protein.	96.64
PRK11010	491	ampG muropeptide transporter; Validated	96.64
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.57
PRK11043	401	putative transporter; Provisional	96.56
PRK10504	471	putative transporter; Provisional	96.53
TIGR00891	405	2A0112 putative sialic acid transporter.	96.46
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.44
PRK11010	491	ampG muropeptide transporter; Validated	96.44
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.4
PRK03699	394	putative transporter; Provisional	96.4
PRK15011	393	sugar efflux transporter B; Provisional	96.39
PRK09952	438	shikimate transporter; Provisional	96.33
TIGR00895	398	2A0115 benzoate transport.	96.32
PRK12307	426	putative sialic acid transporter; Provisional	96.31
TIGR00893	399	2A0114 d-galactonate transporter.	96.31
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.25
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.13
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.04
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.0
PRK05122	399	major facilitator superfamily transporter; Provisi	95.95
KOG0569	485	consensus Permease of the major facilitator superf	95.91
PRK11902	402	ampG muropeptide transporter; Reviewed	95.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	95.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	95.82
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.76
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	95.75
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	95.72
PRK09705	393	cynX putative cyanate transporter; Provisional	95.71
PRK10213	394	nepI ribonucleoside transporter; Reviewed	95.58
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.54
PRK11902	402	ampG muropeptide transporter; Reviewed	95.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	95.42
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	95.41
KOG0254	513	consensus Predicted transporter (major facilitator	95.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	95.23
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.23
PRK09874	408	drug efflux system protein MdtG; Provisional	95.03
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	94.92
PRK03633	381	putative MFS family transporter protein; Provision	94.84
PRK12382	392	putative transporter; Provisional	94.71
PRK09848	448	glucuronide transporter; Provisional	94.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	94.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	94.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.46
TIGR00788	468	fbt folate/biopterin transporter. The only functio	94.31
PRK11195	393	lysophospholipid transporter LplT; Provisional	94.04
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.03
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	93.91
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	93.86
PRK15403	413	multidrug efflux system protein MdtM; Provisional	93.81
PRK10133	438	L-fucose transporter; Provisional	93.59
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.55
TIGR00898	505	2A0119 cation transport protein.	93.54
TIGR00892	455	2A0113 monocarboxylate transporter 1.	93.49
PRK11663	434	regulatory protein UhpC; Provisional	93.25
PRK10091	382	MFS transport protein AraJ; Provisional	93.17
TIGR00896	355	CynX cyanate transporter. This family of proteins	92.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	92.41
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	92.38
PRK10429	473	melibiose:sodium symporter; Provisional	91.65
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	91.57
COG2270	438	Permeases of the major facilitator superfamily [Ge	91.53
KOG0254	513	consensus Predicted transporter (major facilitator	91.19
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	90.14
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	89.23
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	88.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	88.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	88.45
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	88.4
PRK09669	444	putative symporter YagG; Provisional	87.83
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	87.78
PF13347	428	MFS_2: MFS/sugar transport protein	87.54
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	87.21
PRK09848	448	glucuronide transporter; Provisional	86.75
PRK09669	444	putative symporter YagG; Provisional	86.72
PRK11646	400	multidrug resistance protein MdtH; Provisional	86.47
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	85.76
PRK10054	395	putative transporter; Provisional	85.47
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	85.09
KOG2533	495	consensus Permease of the major facilitator superf	82.55
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	82.54
KOG0569	485	consensus Permease of the major facilitator superf	81.95
PF13347	428	MFS_2: MFS/sugar transport protein	81.71
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	80.2

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=100.00  E-value=3.7e-67  Score=503.84  Aligned_cols=248  Identities=46%  Similarity=0.937  Sum_probs=240.9

Q ss_pred             cchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhccccccccccccchhhhhhhhHHHHHHHHhhhhhcc
Q 014518           15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGY   94 (423)
Q Consensus        15 Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy   94 (423)
                      ||+++++++|+|+++|++|.||+||||||+++||||+|+|+|++++|+|.++|+++|+++|++|||+++++|++++++||
T Consensus         1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY   80 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY   80 (250)
T ss_pred             ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcCCCcc
Q 014518           95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHA  174 (423)
Q Consensus        95 ~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~~~  174 (423)
                      +++|++++|+++++++|++|+|.+++++|++|+|||+++||+||||++||+|+|++|+++||||+||+++|+++|++|++
T Consensus        81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~  160 (250)
T PF06813_consen   81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS  160 (250)
T ss_pred             HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence            99999999999878999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeechhhhhhhheeeEeccCCc--cccccCCCCceeehhHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q 014518          175 NLIFMVAVGPAMVVIALMFIIRPVGGH--RQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFV  252 (423)
Q Consensus       175 ~fllfla~~~~~v~~~~~~fvr~~~~~--~~~~~~~~~~f~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~i~~~  252 (423)
                      .|++|+++.|.++++++++|+|++|++  ++++++|+++|...+.+++.+++|+++++++++++++++..+....+++++
T Consensus       161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l  240 (250)
T PF06813_consen  161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL  240 (250)
T ss_pred             HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998873  455677889999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhee
Q 014518          253 LLFIPIVIPI  262 (423)
Q Consensus       253 ll~~p~~v~~  262 (423)
                      +|++|+.||+
T Consensus       241 lL~~Pl~i~~  250 (250)
T PF06813_consen  241 LLLLPLAIPV  250 (250)
T ss_pred             HHHhhhhccC
Confidence            9999999885

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-62  Score=520.55  Aligned_cols=363  Identities=18%  Similarity=0.273  Sum_probs=297.8

Q ss_pred             cCcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhccccccccccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           13 NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      .+||+++++++|+++|+|+.|.|++|+++||+++|+||+|+++++..+...+.+++|+|.++||+|||+++++|+++.++
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~i  103 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL  103 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999998865544445566999999999999999999999999


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcCCC
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD  172 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~  172 (423)
                      ||+++|+++++.+. +++|++|++.++.|+|++++++++++++++|||++||+++|+++++.|+|++|+++++.+++.++
T Consensus       104 G~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~  182 (591)
T PTZ00207        104 GTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN  182 (591)
T ss_pred             HHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999884 48999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeeeechhhhhhhheeeEeccCCccc---c---ccCC-----------------CCceeehhHHHHHHHHHHHHH
Q 014518          173 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQ---V---RPSD-----------------SSSFTFIYSVCLLLAAYLMGV  229 (423)
Q Consensus       173 ~~~fllfla~~~~~v~~~~~~fvr~~~~~~~---~---~~~~-----------------~~~f~~~~~~~~~l~~yl~~~  229 (423)
                      .+.+++++++.+.+++++++.++|.||++..   +   +++|                 .++|..++++++++++||+++
T Consensus       183 ~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~  262 (591)
T PTZ00207        183 TSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQ  262 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887642   1   1111                 237889999999999999999


Q ss_pred             HHHHhhhccCchhHHHHHHHHH-HHHHhhhhheeeeecccCCCChhhhhcCCCCCCCCCCCCCccccchhhccccccCCc
Q 014518          230 MLVEDLVDLNHTVIIIFTVILF-VLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPK  308 (423)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~i~~-~ll~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (423)
                      +++++|++++++.+..++++++ ++++.| ++++|.++++..++ +++     +   +.     +..     +..+++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~~~lll~~p-~l~ip~~~~~~~~~-~~~-----~---~~-----~~~-----~~~~~~~~  322 (591)
T PTZ00207        263 GALVAYLKLGSNFKVGFAVTVIVLTVIFP-FMAFPLTTFDGKRP-HDD-----S---DG-----KAK-----EHVEAGEE  322 (591)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHH-HHhhhHHHhccCCc-CCC-----c---cc-----ccc-----cccccccc
Confidence            9999999999999999999888 555556 34444433332211 000     0   00     000     00000000


Q ss_pred             ccCccCcchhhhHHHHHHHHHHHHHhccc-eeec-ccCCCCCCCchhHHHHHHhhhHHHHHHHHHhcCCCCceeecchhh
Q 014518          309 DVDLLPASERRKRIAQLQARLFHAAAEGA-VRVK-RRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ  386 (423)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~p~~~~d~t~~q~l~t~dFWllf~~~~~g~G~Gl~~InN~gq  386 (423)
                       .+                     ..+++ .+.+ ++..|++|+  |++|+|++.|||++|++++||+|+|++++||+||
T Consensus       323 -~~---------------------~~~~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~q  378 (591)
T PTZ00207        323 -VS---------------------AAEDKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARF  378 (591)
T ss_pred             -cc---------------------ccccccccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHH
Confidence             00                     00000 0111 124588876  9999999999999999999999999999999999


Q ss_pred             hhhhc-CC-CCc--ee-eeehhhHhhhhhccccccccee
Q 014518          387 MSQSL-GY-DNT--HI-FVSMISIWNFLGRVGGGYFSEI  420 (423)
Q Consensus       387 I~~al-g~-~~~--~~-~VsL~Si~n~~GRl~~G~~SD~  420 (423)
                      |++|+ |+ .+.  +. +|||+|||||+||+++|++|.+
T Consensus       379 I~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~  417 (591)
T PTZ00207        379 IYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW  417 (591)
T ss_pred             HHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH
Confidence            99999 77 334  44 9999999999999999999943

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.63  E-value=5.6e-18  Score=167.70  Aligned_cols=148  Identities=21%  Similarity=0.288  Sum_probs=127.5

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      |||..+++.+..+.+.|..|.++.+.|.+++.+|+|.+|.+.+..+..+|..+ .++.|.+.||+|+|.++.++.++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890         1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL   80 (377)
T ss_pred             CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence            57999999999999999999999999999999999999999999888899866 78899999999999999999999888


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      |+.+...+       +++|.+.+..++.|.|.+..+.++.....++||++||.+.++.....++++.+...+...+
T Consensus        81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  149 (377)
T TIGR00890        81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSV  149 (377)
T ss_pred             HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence            88653321       3567777777788888888888888888999999999999999999999887765554433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.9e-14  Score=150.86  Aligned_cols=178  Identities=20%  Similarity=0.291  Sum_probs=140.1

Q ss_pred             cchhHHHHHHHH-hhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           15 RWLVFVAAMWIQ-SCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        15 Rw~~l~a~~~i~-l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      -|.+.+++.+++ .+-|..|+|+++=+++++.++-+.+|.+.|+....-..++ |++.+.++|++|.|.+.++|+++.++
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence            489999998775 6779999999999999999999999988865433333333 99999999999999999999999999


Q ss_pred             cceeeeeeeeCCCCCchHHH-HhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcCC
Q 014518           93 GYGWVWLIVTGRAPVLPLWA-MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAP  171 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~-l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~  171 (423)
                      |+.+-..       ..++|+ +..|.++.|.|.++.+..+++..-..|+++|+.|.|+..+..|++..+|..+-.-+++.
T Consensus       124 g~~lssF-------~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~  196 (509)
T KOG2504|consen  124 GLLLSSF-------ATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK  196 (509)
T ss_pred             HHHHHHH-------HhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence            9887111       124655 45588999999999999999999999999999999999999999999999888877743


Q ss_pred             --CccceeeeeeechhhhhhhheeeEeccCCc
Q 014518          172 --DHANLIFMVAVGPAMVVIALMFIIRPVGGH  201 (423)
Q Consensus       172 --~~~~fllfla~~~~~v~~~~~~fvr~~~~~  201 (423)
                        ....++.+.++.  +-++++....||.+.+
T Consensus       197 ~G~r~~~l~~~~~~--l~~~~~~~~~rp~~~~  226 (509)
T KOG2504|consen  197 YGWRGALLIFGGIS--LNVLVAGALLRPLSPP  226 (509)
T ss_pred             hCcHHHHHHHHHHH--HHHHHHHHHcCCCCcC
Confidence              333333333322  4455555666664433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.24  E-value=5.5e-13  Score=139.13  Aligned_cols=131  Identities=15%  Similarity=0.061  Sum_probs=104.8

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ..+.++.-.|++++.+|+|.+|+..+.++..++..+ .++.|.+.||+|+|.++.++.+...++.+.+.....+.  ..+
T Consensus        44 ~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~  121 (467)
T PRK09556         44 IRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG--SVS  121 (467)
T ss_pred             HhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc--cch
Confidence            456688889999999999999999999888888866 78999999999999998887776555544433322222  236


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~  163 (423)
                      ++.+.++-++.|.+++....++.....++|| ++||.+.|+.....++++++-..
T Consensus       122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~  176 (467)
T PRK09556        122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGG  176 (467)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHH
Confidence            8888888888889888877888888889997 57999999999998898877543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.19  E-value=2e-12  Score=128.08  Aligned_cols=125  Identities=16%  Similarity=0.181  Sum_probs=106.6

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ....|+...|.+++++|+|.+|...+..+..++..+ .++.|.+.||+|+|.++.+|.+...++..++..+       ++
T Consensus        10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~   82 (379)
T TIGR00881        10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TS   82 (379)
T ss_pred             hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hh
Confidence            456677888999999999999999998888888866 7899999999999999999999988888765433       25


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s  162 (423)
                      +|.+.+..++.|.+.+..+.+......+++|+ +||.+.|+......+++.+-.
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence            67778888888898888888888888999985 799999999999888887765

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.17  E-value=6.7e-13  Score=136.47  Aligned_cols=145  Identities=8%  Similarity=-0.081  Sum_probs=112.2

Q ss_pred             cCcchhHHHHHHHHhhcc-cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      +.||.+++.....-.+.. -.+..+.-+|.|++.+|+|.+|..++..+..+|..+ .++.|.+.||+|+|.++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            345665555555444433 356677788999999999999999998888888766 789999999999999999999998


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHH
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      .++..+..++       ++++.+.+.-++.|.+.+....++.....++||. +||.+.|+.....+++..+-..+
T Consensus        84 ~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~  151 (412)
T TIGR02332        84 GIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL  151 (412)
T ss_pred             HHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888774331       2355667777788888887777777777889984 79999999998888877655333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00895 2A0115 benzoate transport

Probab=99.13  E-value=5.8e-12  Score=125.80  Aligned_cols=147  Identities=18%  Similarity=0.146  Sum_probs=117.9

Q ss_pred             hcCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhh
Q 014518           12 FNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ   89 (423)
Q Consensus        12 ~~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~   89 (423)
                      .+++|..+..+.+...+.|. .+.++.+.|.+++.+|+|..+...+.....++..+ .++.|.+.||+|+|.++.++.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            34567777777777666654 56778899999999999999999988877888766 68899999999999999999998


Q ss_pred             hhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518           90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus        90 ~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      ..+++.++...       +++|.+.+..++.|.+.+..+.+......+++| ++||.+.|+......+++.+-..+.
T Consensus        92 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  161 (398)
T TIGR00895        92 FSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA  161 (398)
T ss_pred             HHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence            88887765432       246667777788889988888888888889998 5799999998888888776665444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.12  E-value=5.3e-12  Score=132.43  Aligned_cols=138  Identities=17%  Similarity=0.217  Sum_probs=95.0

Q ss_pred             chhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcc
Q 014518           16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGY   94 (423)
Q Consensus        16 w~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy   94 (423)
                      |.............-..|.++.+.|.+++.+|+|.+|.+++.+...+|..+ .++.|.+.||+|+|.++.++.+...++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~  115 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAV  115 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            344444333344444567888888999999999999999988877888876 4899999999999999999998877776


Q ss_pred             eeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518           95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus        95 ~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .+...+     +  +++.+.+.-++.|.+.+.. ..+.....++|| ++||.+.|+..+...+++++-
T Consensus       116 ~~~~~~-----~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~  175 (476)
T PLN00028        116 FCMSLV-----S--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVT  175 (476)
T ss_pred             HHHHHh-----c--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHH
Confidence            543221     1  3344444444555555432 233334567897 579999998776555555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.09  E-value=9.2e-13  Score=130.46  Aligned_cols=128  Identities=20%  Similarity=0.174  Sum_probs=106.8

Q ss_pred             ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchH
Q 014518           32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL  110 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~  110 (423)
                      .+.++...|.+++++|+|..+...+..+..++..+ .++.|.+.||+|+|.++.++.+...++..++..+       +++
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   82 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAY   82 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCH
Confidence            46678888999999999999999988888888865 7899999999999999999998877777664332       156


Q ss_pred             HHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHH
Q 014518          111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      |.+.+..++.|.|.+...++......+++| ++||.+.|+.....++++.+-..+..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            777788888899999888888888999998 57999999999988888877655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.09  E-value=6.2e-12  Score=131.16  Aligned_cols=145  Identities=11%  Similarity=0.055  Sum_probs=108.6

Q ss_pred             cCcchhHHHHHHHHhh-cccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWLVFVAAMWIQSC-AGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~-~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      ..||..++++.+.+.. -+..+.++.+-+++++.+|+|+++...+.+...++..+ +++.|.+.||+|+|.+++++.+..
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            3479888887776542 34457789999999999999999999977766666544 788999999999999999998887


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhh-heeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHH
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCI-LIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~-f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      .++..+...  ..     ++|.+.+ .-++.|.|.+.....+.....++||++||.+.|+.....++++.+...+
T Consensus        95 ~~~~~~~~~--~~-----~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l  162 (455)
T TIGR00892        95 SLGMILASF--SS-----NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPL  162 (455)
T ss_pred             HHHHHHHHH--hh-----hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHH
Confidence            777665322  11     3445433 2345567776555566666778999999999999999999888776444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.07  E-value=3.2e-12  Score=132.11  Aligned_cols=130  Identities=16%  Similarity=0.148  Sum_probs=104.1

Q ss_pred             ccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      -..+.++.+.|++++.+|+|.+|...+.+...++..+ .++.|.+.||+|+|.++.++.+...++..++..     .  +
T Consensus        37 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~--~  109 (434)
T PRK11663         37 FTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF-----S--S  109 (434)
T ss_pred             HhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH-----H--h
Confidence            3456788899999999999999999988888888755 789999999999999999999998877765432     1  2


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      ++|.+++..++.|.+.+....++.....++||+ +||++.|+.-...++++.+-..+..
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  168 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG  168 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777666666777777777777788899984 6999999999888888877654443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.03  E-value=1.4e-11  Score=122.69  Aligned_cols=126  Identities=18%  Similarity=0.237  Sum_probs=97.2

Q ss_pred             cccccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCC
Q 014518           29 AGIGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP  106 (423)
Q Consensus        29 ~Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~  106 (423)
                      ....|.++.+.|+ +++.+|+|..+.+++.....++..+ .++.|.+.||+|+|.+++++.++..++..++..+     +
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~   88 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----V   88 (366)
T ss_pred             HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----h
Confidence            4456889999996 9999999999999999888888866 7899999999999999999999988887765432     1


Q ss_pred             CchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518          107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       107 ~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      . ++|.+.+..++.|.+.+. ...+.....++|| ++||.+.++..+...++..+-
T Consensus        89 ~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  142 (366)
T TIGR00886        89 Q-SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVA  142 (366)
T ss_pred             h-hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHH
Confidence            0 455666666666666553 3556777788897 579999998776555554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.01  E-value=4.6e-12  Score=128.68  Aligned_cols=147  Identities=14%  Similarity=0.042  Sum_probs=120.4

Q ss_pred             hhhcCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHH
Q 014518           10 SFFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGA   87 (423)
Q Consensus        10 ~~~~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~   87 (423)
                      ++.+++|..+..+.++..+.+. .+.++...|.+++.+|+|.+|.+.+.++..+|..+ .++.|.+.||+|+|.++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (406)
T PRK11551          8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV   87 (406)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            4556899999998888877764 67889999999999999999999999888888866 688999999999999999999


Q ss_pred             hhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHH
Q 014518           88 LQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus        88 ~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~  163 (423)
                      ++..++..+..++       ++++.+.+..++.|.+.+....+......++|| ++||++.|+......+++.+-..
T Consensus        88 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  157 (406)
T PRK11551         88 ALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASV  157 (406)
T ss_pred             HHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877776553321       246677777788889888888778888889997 67999999888777777665533

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.99  E-value=9.1e-12  Score=129.44  Aligned_cols=151  Identities=13%  Similarity=0.158  Sum_probs=107.3

Q ss_pred             hhhhcCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHH
Q 014518            9 VSFFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVG   86 (423)
Q Consensus         9 ~~~~~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG   86 (423)
                      +..++.+|.++.+..+....... .+.++..-|.+++. |+|.++...+.+..-++..+ .++.|.+.||+|+|.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~   99 (452)
T PRK11273         21 PTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   99 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence            33445567765555444333332 23467788999988 99999999988888888755 88999999999999999999


Q ss_pred             HhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHH
Q 014518           87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus        87 ~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~  163 (423)
                      .+...++...+.++-..   ..+++.+.+..++.|.+++..+..+.....++|| ++||++.|+.-...++++++...
T Consensus       100 ~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  174 (452)
T PRK11273        100 LILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL  174 (452)
T ss_pred             HHHHHHHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence            98877777655443211   1135555555566777777776666677788897 56999999977777777665543

>PRK03699 putative transporter; Provisional

Probab=98.97  E-value=1.3e-11  Score=125.70  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=113.6

Q ss_pred             hcCcchhHHHHHHHHhhcc-cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhh
Q 014518           12 FNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ   89 (423)
Q Consensus        12 ~~~Rw~~l~a~~~i~l~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~   89 (423)
                      ..|||.+...+.+...+.| ..+.++...|++++.+|+|.+|...+.....+|..+ .++.|.+.||+|+|.++.++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~   81 (394)
T PRK03699          2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL   81 (394)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3577776666666665554 478899999999999999999999988888888766 66899999999999999999988


Q ss_pred             hhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHH
Q 014518           90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        90 ~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      ..++..+...+       +++|.+.+..++.|.+.+.....+.....+.||+ +||.+.++.-...++++.+...+
T Consensus        82 ~~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  150 (394)
T PRK03699         82 MILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPII  150 (394)
T ss_pred             HHHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777664331       2466666667777777777777777777889985 68998888777777777665443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.94  E-value=5.9e-11  Score=121.15  Aligned_cols=123  Identities=12%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             cccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        33 Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      +.++...|++++++|+|.+|..++.+...+|..+ .++.|.+.||+|+|.++.+|.++..+|..+..+     .  ++++
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~-----a--~~~~   98 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL-----Y--PQSA   98 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH-----C--cchH
Confidence            6689999999999999999999988887787755 788999999999999999999999999886432     2  2455


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHH
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      .+.+.-++.|.|.+..+..+....-++||++||.+.|+.-+...+++.+-.
T Consensus        99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~  149 (393)
T PRK09705         99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGA  149 (393)
T ss_pred             HHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHH
Confidence            666778889999998877766667788999999999987766655555443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.93  E-value=3.2e-11  Score=122.37  Aligned_cols=142  Identities=11%  Similarity=-0.019  Sum_probs=103.7

Q ss_pred             cCcchhHHHHHHHHhhc-ccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWLVFVAAMWIQSCA-GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~-Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      .+||..+..-.+.+... -..|.-+..-|++++++|+|++|...+.+...++..+ .++.|.+.||+|+|.++.++.+..
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            45675444434443333 3344444567899999999999999987777777655 688999999999999999999988


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .+|..+...     .  +++|.+.+.-++.|.+.+.....+.....+++| ++||.+.|+.....+++.++-
T Consensus        85 ~~~~~~~~~-----~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig  149 (390)
T PRK03545         85 IASHVLSAL-----A--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLG  149 (390)
T ss_pred             HHHHHHHHH-----h--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHH
Confidence            888765332     1  256677766677777777766666666778887 689999999877777766554

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.91  E-value=3.9e-11  Score=122.65  Aligned_cols=145  Identities=19%  Similarity=0.142  Sum_probs=113.3

Q ss_pred             cCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      +.||..++.......+.+. .+..+...|.+++.+|+|..|...+.+...+|..+ +++.|.+.||+|+|.++.++.+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            3445555555555566554 33445666888999999999999988888888866 788999999999999999999998


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      .+|..+...+       .++|.+.+.-++.|.|.+..+++......++|| ++||++.|+.....+++..+...+
T Consensus        94 ~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l  161 (426)
T PRK12307         94 SVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF  161 (426)
T ss_pred             HHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH
Confidence            8887653332       246677777888889888888888888889998 559999999988888887776444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.88  E-value=5.7e-11  Score=122.85  Aligned_cols=149  Identities=16%  Similarity=0.164  Sum_probs=109.7

Q ss_pred             hcCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhh
Q 014518           12 FNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ   89 (423)
Q Consensus        12 ~~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~   89 (423)
                      .+.||..+.+..+...+... ...|+...|.+++ +|+|++|...+..+..++..+ .++.|.+.||+|+|.++.+|.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~  100 (438)
T TIGR00712        22 KRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence            34567776666555544443 3456667788887 599999999988888888855 78999999999999999999888


Q ss_pred             hhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518           90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        90 ~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      ..+++..+...-  .. ..+++.+++..++.|.+.+....+......+.|| ++||++.|+.-...++++.+...+
T Consensus       101 ~~~~~~~~~~~~--~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l  173 (438)
T TIGR00712       101 SAAVMLLMGFVP--WA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLL  173 (438)
T ss_pred             HHHHHHHHhccc--cc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHH
Confidence            888776643321  11 1246666666667777777766777777788996 679999999888877777766444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.80  E-value=1.8e-10  Score=119.81  Aligned_cols=117  Identities=11%  Similarity=0.030  Sum_probs=94.9

Q ss_pred             ccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCC
Q 014518           45 SLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNG  123 (423)
Q Consensus        45 ~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g  123 (423)
                      .+++|.++...+..+-.+|..+ +++.|.+.||+|+|.++.++.+...++..+...+..     .+++.+.+.-++.|.+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHh
Confidence            6899999999988888888866 789999999999999999999887777665322221     1344566677788899


Q ss_pred             ceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHH
Q 014518          124 ETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       124 ~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      .+....++.....++|| ++||++.|+......++..+-..+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~  188 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISG  188 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 68999999999988888877655543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.79  E-value=7.3e-11  Score=118.07  Aligned_cols=143  Identities=15%  Similarity=0.065  Sum_probs=107.8

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      +|+..+.+ ++..+..-....+...-|.+++.+|+|.++...+.++..+|..+ .++.|.+.||+|+|.++.++.+...+
T Consensus         4 ~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~   82 (385)
T TIGR00710         4 KAFALLLG-CLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFAL   82 (385)
T ss_pred             hHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            34443333 33333333334455556888999999999999988888888765 78999999999999999999988888


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      +..++..+       +++|.+++..++.|.+.+..+++......+++| ++||.+.|+......+++.+-..+
T Consensus        83 ~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  148 (385)
T TIGR00710        83 SSLGLALS-------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL  148 (385)
T ss_pred             HHHHHHHH-------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77764321       256677777888899999888888888888998 569999999888888776665444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00896 CynX cyanate transporter

Probab=98.77  E-value=4.6e-10  Score=112.25  Aligned_cols=121  Identities=19%  Similarity=0.064  Sum_probs=96.4

Q ss_pred             cccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        33 Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      ..++..-|++++.+|+|.++...+.....++..+ +++.|.+.||+|+|.++.+|.+...+|....      ..  ++.+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~--~~~~   88 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SA--PGTA   88 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hh--ccHH
Confidence            4567788999999999999999998888888866 7899999999999999999998877776542      11  2355


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHH
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .+.+..++.|.|.+...+++.....+.||++||.+.|+.....+++..+-
T Consensus        89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~  138 (355)
T TIGR00896        89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALA  138 (355)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence            55566677788877766666556678889999999998887777776655

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.75  E-value=4.3e-10  Score=112.94  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=124.1

Q ss_pred             hhcCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHh
Q 014518           11 FFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL   88 (423)
Q Consensus        11 ~~~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~   88 (423)
                      ..+++|..+.+..+...+.+. .+.++...+++++++|+|++|...+.....++..+ +++.|.+.||+|+|.++.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            456888888887777777775 56688888999999999999999988888888766 7899999999999999999998


Q ss_pred             hhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHH
Q 014518           89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTM  167 (423)
Q Consensus        89 ~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~  167 (423)
                      ...++..+...     .  +++|.+.+.-++.|.|.+..+.++.....+++| ++||.+.|+.-...+++..+-..+...
T Consensus        86 ~~~~~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        86 LFSAGTLACGF-----A--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHH-----h--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777665432     1  257777888888999999888888888889997 679999999998888888776665544


Q ss_pred             h
Q 014518          168 I  168 (423)
Q Consensus       168 ~  168 (423)
                      +
T Consensus       159 l  159 (405)
T TIGR00891       159 V  159 (405)
T ss_pred             H
Confidence            4

>TIGR00897 2A0118 polyol permease family

Probab=98.74  E-value=5e-10  Score=114.45  Aligned_cols=146  Identities=16%  Similarity=0.181  Sum_probs=99.6

Q ss_pred             cCcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhh
Q 014518           13 NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF   91 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~   91 (423)
                      ++.+...++....+...+..|.  ..++ +.+++|+|.+|..++.++..++..+ .++.|.+.||+|+|.++.++.+...
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~--~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQG--WLSP-FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWC   89 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHH--hHHH-HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            3444555555555666665554  3344 4466899999999988877888755 7899999999999999999998877


Q ss_pred             hcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518           92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        92 ~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      ++..++-  ..+.. .+++|.+.+...+.|.|.+....+......+++| ++||++.|+.-+..+++.++++..
T Consensus        90 ~~~~~~~--~~~~~-~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~  160 (402)
T TIGR00897        90 VGHAAFI--VFGLG-HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSY  160 (402)
T ss_pred             HHHHHHH--HHhcc-CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7754321  11111 1245555555666677766554555555667775 789999999888877776555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.72  E-value=9.9e-10  Score=111.96  Aligned_cols=127  Identities=14%  Similarity=0.060  Sum_probs=98.8

Q ss_pred             cccchhhhhhccCcc--------hhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCC
Q 014518           35 FGSISPVIKSSLNYN--------QKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRA  105 (423)
Q Consensus        35 Fs~yS~~Lk~~l~~s--------q~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i  105 (423)
                      ++..-+.++++++++        +.|...+..+..+|..+ +++.|.+.||+|+|.+++++.++..+|..+....  .. 
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~-  123 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--AF-  123 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--cc-
Confidence            334445666677666        89999988888888866 7899999999999999999999988877664322  11 


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                       ..+.|.+.+..++.|.|.+..+.+......++|| ++||.+.++.-...++++.+-..+.
T Consensus       124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence             1245677788888999999888888888889997 6799999998888888777765554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=98.65  E-value=2.3e-10  Score=119.95  Aligned_cols=125  Identities=18%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             ccccccccchhhhhhccCcc---hhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCC
Q 014518           30 GIGYLFGSISPVIKSSLNYN---QKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRA  105 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~l~~s---q~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i  105 (423)
                      +-.|.++.+.+++++.+|++   ..+...+..+..+|..+ .++.|.+.||+|+|.+++++.+...++.++..+      
T Consensus       103 ~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~------  176 (505)
T TIGR00898       103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF------  176 (505)
T ss_pred             CcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH------
Confidence            45677778999999999999   89999988888899877 678999999999999999999887777665432      


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHH
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~  161 (423)
                       .+++|.+.++-++.|.+.+.....+.....+.+|. +||.+.++...+.+++..+.
T Consensus       177 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~  232 (505)
T TIGR00898       177 -SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLL  232 (505)
T ss_pred             -cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHH
Confidence             13577888888899999999888888999999975 69988888755555554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.64  E-value=1.9e-09  Score=111.90  Aligned_cols=126  Identities=15%  Similarity=0.125  Sum_probs=103.1

Q ss_pred             ccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHH
Q 014518           34 LFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWA  112 (423)
Q Consensus        34 ~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~  112 (423)
                      ..+..-|.+++.+|.|..+...+.++..++..+ .++.|.+.||+|+|.++.+|.+...+|..+...+       ++++.
T Consensus        20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~   92 (485)
T TIGR00711        20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-------PNLEL   92 (485)
T ss_pred             HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-------CCHHH
Confidence            355678999999999999999988888888866 6789999999999999999999988888764322       25667


Q ss_pred             HhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHH
Q 014518          113 MCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       113 l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      +.+..++.|.|.+.....+.....++|| ++||.+.|+......+++.+-..+..
T Consensus        93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  147 (485)
T TIGR00711        93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG  147 (485)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHh
Confidence            7788888899999888888888889997 68999999987777777765544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.54  E-value=1.9e-09  Score=109.74  Aligned_cols=122  Identities=13%  Similarity=0.134  Sum_probs=91.6

Q ss_pred             ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhh-hcceeeeeeeeCCCCCch
Q 014518           32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF-IGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~-~Gy~~~~l~~~g~i~~~~  109 (423)
                      -+.|+..-|++++++|+|.+|+..+..+..+|..+ .++.|.+.||+|+|.++. +++..+ .+..    ...   ..++
T Consensus         7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~-~~~~~~~~~~~----~~~---~~~~   78 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLF-GSLATFAAAAG----RLL---DPFN   78 (368)
T ss_pred             HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH-HHHHHHHHHHH----HHH---Hhcc
Confidence            35678888999999999999999988887888755 789999999999888755 444433 3321    111   1125


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      ++.+.+.-++.|.|.+. ..++.....++|| ++||++.++......+++.+-.
T Consensus        79 ~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~  131 (368)
T TIGR00903        79 YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFAL  131 (368)
T ss_pred             HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888898885 4455555678887 6799999999988888877763

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.49  E-value=2.8e-09  Score=109.91  Aligned_cols=138  Identities=16%  Similarity=0.155  Sum_probs=109.9

Q ss_pred             hccccccc-ccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCC
Q 014518           28 CAGIGYLF-GSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRA  105 (423)
Q Consensus        28 ~~Gt~Y~F-s~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i  105 (423)
                      .-|..+.. +..-|++|+.+|+|.+|...+..+..+|..+ +++.|.+.||+|+|.++.+|.+...+|..+++.+  ...
T Consensus        14 ~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~--~~~   91 (410)
T TIGR00885        14 LWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA--AEI   91 (410)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--Hhh
Confidence            33444444 3667999999999999999999888888866 8899999999999999999999999998664222  111


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                        .++|.+++..++.|.|.+..++++-....+..| ++|+...++.-++.++++.+-..+...++
T Consensus        92 --~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        92 --MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             --ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              257788888899999999998877776667777 56899999999999998887766655554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.46  E-value=3.8e-09  Score=107.02  Aligned_cols=121  Identities=16%  Similarity=0.058  Sum_probs=92.8

Q ss_pred             ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchH
Q 014518           32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL  110 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~  110 (423)
                      .+.+..+-|++++++|+|..+...+.....+|..+ .++.|.+.||+|+|.++++|.+...+++.++..+       +++
T Consensus        19 ~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~~   91 (392)
T PRK10473         19 IDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ETS   91 (392)
T ss_pred             HHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------CcH
Confidence            34444789999999999999999887777788766 6889999999999999999999988888764421       245


Q ss_pred             HHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhH
Q 014518          111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGA  159 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaa  159 (423)
                      +.+.+..++.|.+.+..+..+.....+.|| ++|+.+.++.-+...+++.
T Consensus        92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~  141 (392)
T PRK10473         92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPV  141 (392)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            555555667778877777777777778886 6899988876655544433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.45  E-value=7.6e-09  Score=104.95  Aligned_cols=121  Identities=10%  Similarity=0.002  Sum_probs=92.0

Q ss_pred             cccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        33 Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      +.++..-|.+++++|+|.+|.+.+..+..+|..+ .++.|.+.||+|+|+++.++.+...++..+...     .  +++|
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~-----~--~~~~   92 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL-----S--SSYL   92 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH-----h--CcHH
Confidence            3555577899999999999999988888888866 678999999999999999999998777765322     1  2567


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHH
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAI  160 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI  160 (423)
                      .+.+.-++.|.+.+...........+++|+ +||.+.|+.-....++..+
T Consensus        93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  142 (382)
T PRK10091         93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL  142 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH
Confidence            777777888888776555555556678875 6888877665555555444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.44  E-value=6.1e-08  Score=98.79  Aligned_cols=139  Identities=17%  Similarity=0.140  Sum_probs=96.9

Q ss_pred             cchhHHHHHHHH-hhcccccccccchhhhhhccCcchhHHHh-hhhccccccccccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           15 RWLVFVAAMWIQ-SCAGIGYLFGSISPVIKSSLNYNQKQIAR-LGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        15 Rw~~l~a~~~i~-l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~-i~~a~~vG~~~g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      ++..|..+++.- +|=..=+.|+.-.++|++.+|+|..|..+ .++..-.|..+=+|.|++.|++|||.+..++.+...+
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I   91 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI   91 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence            344444444432 22233456778889999999999999999 5666677778899999999999999999999988554


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhh-hhcCC-CCCCCeeEeeccccc-hhhHHH
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSC-VQNFP-KSRGPVVGILKGFAG-LGGAIL  161 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~-~~nFP-~~RG~vvgilk~~~G-LSaaI~  161 (423)
                      =-+++  ++....  +++|++.+..++.|.+.+-+  |.=+++ -++|| +++|++.||--  .| ++.++-
T Consensus        92 P~~~~--~~a~~~--~~~~~ll~~gll~G~~GasF--av~m~~~s~~fP~~~qG~AlGI~g--~GN~G~av~  155 (417)
T COG2223          92 PCLGL--AFAVTY--PSTWQLLVIGLLLGLAGASF--AVGMPNASFFFPKEKQGLALGIAG--AGNLGVAVA  155 (417)
T ss_pred             HHHHH--HHHccC--CchHHHHHHHHHHhccccee--hcccccccccCChhhhhHHHHHhc--cccccHHHH
Confidence            44333  333332  35688888888888877755  444444 45667 67899999876  55 444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.44  E-value=4.9e-09  Score=103.01  Aligned_cols=128  Identities=23%  Similarity=0.295  Sum_probs=105.3

Q ss_pred             cccchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHH
Q 014518           35 FGSISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWA  112 (423)
Q Consensus        35 Fs~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~  112 (423)
                      ++..-+ .+++++|+|.+|++.+.++..++..+ +++.|.+.||+|+|.++.++.+...++.....  +.     .+.|.
T Consensus        15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~~-----~~~~~   87 (352)
T PF07690_consen   15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA--FA-----SNFWL   87 (352)
T ss_dssp             HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--HH-----CCHHH
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh--hh-----hhHHH
Confidence            344445 78999999999999988888888755 88999999999999999999999998844333  22     24667


Q ss_pred             HhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          113 MCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       113 l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      +.+..++.|.|.+..+.+......++||+ +|+.+.|+.-...+++..+-..+...+.
T Consensus        88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  145 (352)
T PF07690_consen   88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI  145 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence            88888899999999999999999999986 8999999999999999877766655554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.43  E-value=1.1e-09  Score=107.95  Aligned_cols=121  Identities=12%  Similarity=0.050  Sum_probs=93.7

Q ss_pred             hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeee
Q 014518           42 IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG  120 (423)
Q Consensus        42 Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~  120 (423)
                      ....++.|..|...+..+..++..+ .++.|.+.||+|+|.+++++.+...++..++..+-.  ....++|.+.+..++.
T Consensus        25 ~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~  102 (365)
T TIGR00900        25 YVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL--LGGLNIWQVYVLAGIL  102 (365)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHH
Confidence            4445788999999988888888855 789999999999999999998887766655433221  1123677888888888


Q ss_pred             cCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518          121 NNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       121 g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      |.+.+....+......+.+| ++||.+.|+.-...+++..+-..+
T Consensus       103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l  147 (365)
T TIGR00900       103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGI  147 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            89888888888788888897 579999999988888887654333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.43  E-value=1.1e-08  Score=107.70  Aligned_cols=148  Identities=14%  Similarity=0.114  Sum_probs=108.8

Q ss_pred             CcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhccccccc-cccccchhhhhhhhHHHHHHHHhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNF   91 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~-~g~~~G~l~D~~gP~~vl~iG~~~~~   91 (423)
                      |+|..+++.......... .-..+.--|++.+.+|.|++|.+.+.++-.++.. +.++.|.+.||+|+|.++++|.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            345544443333333222 2234445789999999999999998888888874 47889999999999999999999988


Q ss_pred             hcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcC-C-CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518           92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNF-P-KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus        92 ~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nF-P-~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      +|..+...+       +++|.+.+.-++.|.|.+....++.....+.| | ++||.+.|+.....+++..+-..+...+
T Consensus        83 ~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l  154 (495)
T PRK14995         83 LASLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL  154 (495)
T ss_pred             HHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888764321       25778888878888888877766666677888 4 5799999999998888765554444333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.40  E-value=6e-09  Score=106.58  Aligned_cols=144  Identities=10%  Similarity=0.034  Sum_probs=109.5

Q ss_pred             hhcCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHh
Q 014518           11 FFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL   88 (423)
Q Consensus        11 ~~~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~   88 (423)
                      ..++-|..+.+..+...+.++ .|.-...-|++++++|+|.+|...+..+..++..+ .++.|.+.||+|+|.++.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~   93 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV   93 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence            344457776666666544444 44444467889999999999999976666676644 7889999999999999999999


Q ss_pred             hhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518           89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus        89 ~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      ...++..+...     .  +++|.+.+.-++.|.+.+.....+.....+.|| ++||.+.++.-+..+++..+-
T Consensus        94 ~~~~~~~~~~~-----~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig  160 (394)
T PRK10213         94 LLTLSCLLVSF-----A--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIA  160 (394)
T ss_pred             HHHHHHHHHHH-----H--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHH
Confidence            98887765321     1  257788888888888888877777777789997 579999999888877776654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.40  E-value=2.2e-09  Score=107.72  Aligned_cols=122  Identities=11%  Similarity=0.081  Sum_probs=95.7

Q ss_pred             cccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        33 Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      ..+.-.-|++++++|+|.+|.+.+..+..+|..+ +++.|.+.||+|+|.++.+|.+...++..++...       +++|
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~   80 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTID   80 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence            3445566788889999999999988888888766 7899999999999999999999888777765432       2455


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .+.+..++.|.+.+..+.+......++|| ++||.+.++.-...+++..+-
T Consensus        81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  131 (377)
T PRK11102         81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLA  131 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777888888777777777788898 569999988877766665554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.37  E-value=2.2e-08  Score=105.62  Aligned_cols=115  Identities=14%  Similarity=0.044  Sum_probs=90.3

Q ss_pred             CcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCce
Q 014518           47 NYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGET  125 (423)
Q Consensus        47 ~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~  125 (423)
                      +++..+...+.....+|..+ .++.|.+.||+|+|.++.++.+...++..+..++.... +..+++.++++-++.|.|.+
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g  130 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS-PKSVMATLCFWRFWLGVGIG  130 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHHHHHHHHHh
Confidence            45667777888888888866 77899999999999999999888888776654443221 11236778888889999999


Q ss_pred             eeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHH
Q 014518          126 YFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       126 ~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      ..+..+..-...+|| ++||++.++.-....++..+-.
T Consensus       131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887       131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 6799999998887777664443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.35  E-value=4.4e-08  Score=102.64  Aligned_cols=139  Identities=13%  Similarity=0.168  Sum_probs=103.3

Q ss_pred             hHHHHHHH-Hhhcccccccccchhhhhh-ccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcc
Q 014518           18 VFVAAMWI-QSCAGIGYLFGSISPVIKS-SLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGY   94 (423)
Q Consensus        18 ~l~a~~~i-~l~~Gt~Y~Fs~yS~~Lk~-~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy   94 (423)
                      .|..+++- .++=..-+.||.-.+.+++ .+|+|.+|+.++...-.++..+ -+|.|.+.||+|||.++.++.++..++.
T Consensus        35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~  114 (462)
T PRK15034         35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC  114 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            44444433 2333346777777888876 7999999999977666666655 5999999999999999999999988777


Q ss_pred             eeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhH
Q 014518           95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGA  159 (423)
Q Consensus        95 ~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaa  159 (423)
                      +++..+.+...  ++++.+.+..++.|.+ +..+.+++....++||+ +||++.|+.-+.-.+++.
T Consensus       115 ~~~~~a~~~~~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~  177 (462)
T PRK15034        115 VWLGIAVQNPN--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVS  177 (462)
T ss_pred             HHHHHHHcccC--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHH
Confidence            76554444433  3688888888888887 55667888888889995 599999999744445544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.33  E-value=1.1e-07  Score=97.16  Aligned_cols=125  Identities=18%  Similarity=0.167  Sum_probs=98.7

Q ss_pred             ccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHH
Q 014518           34 LFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWA  112 (423)
Q Consensus        34 ~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~  112 (423)
                      .|++=.|.|+|++++|.+|+..++++--+.=.+ =+..|.+.||..||....+|-++  .|...   .+-|.  .++++.
T Consensus        47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil--sai~n---il~Gf--s~s~~~  119 (448)
T COG2271          47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL--SAIVN---ILFGF--SPSLFL  119 (448)
T ss_pred             hHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH--HHHHH---HHHhh--hhHHHH
Confidence            689999999999999999999988755554433 45799999999999877666555  22211   11111  237888


Q ss_pred             HhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHH
Q 014518          113 MCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       113 l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      +.++..+-|.=|++.--+|..|-.++||+ +||+..++--+..-.||++..-+.
T Consensus       120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271         120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence            88888888888888888999999999985 699999999999999999986665

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.32  E-value=1e-07  Score=96.63  Aligned_cols=143  Identities=15%  Similarity=0.085  Sum_probs=103.9

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      ++...++.+.++...+ ...........+++++|+|.++...+..+..++..+ .++.|.+.||+|+|.++.++.+...+
T Consensus        15 ~~~~~l~~~~~~~~~~-~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (399)
T PRK05122         15 LRIVSIVMFTFISYLT-IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL   93 (399)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence            3344454444444333 344555677779999999999999988888888866 78999999999999999999988777


Q ss_pred             cceeeeee-eeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchh
Q 014518           93 GYGWVWLI-VTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLG  157 (423)
Q Consensus        93 Gy~~~~l~-~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLS  157 (423)
                      +.....++ +.+.....+++.+.+..++.|.|.+..+.++.....+++| ++||.+.|+.-....++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  160 (399)
T PRK05122         94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGA  160 (399)
T ss_pred             HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHH
Confidence            66554333 2222222246667777788899999888887777778886 78999999876555444

>PRK11043 putative transporter; Provisional

Probab=98.32  E-value=1.2e-08  Score=103.62  Aligned_cols=137  Identities=13%  Similarity=0.030  Sum_probs=90.8

Q ss_pred             cchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhc
Q 014518           15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIG   93 (423)
Q Consensus        15 Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~G   93 (423)
                      .|..+..++...+...+.+.|.-.-|++++.+|+|.++...+..+..+|..+ +++.|.+.||+|+|.++.++.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   84 (401)
T PRK11043          5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG   84 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence            3444555555444444444444444667899999999999988888888866 789999999999999999999887777


Q ss_pred             ceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCC-CCCeeEeeccccchhh
Q 014518           94 YGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGG  158 (423)
Q Consensus        94 y~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~-RG~vvgilk~~~GLSa  158 (423)
                      ..+...     .  +++|.+++..++.|.|.+...........+.||++ |+.+.+..-...++++
T Consensus        85 ~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (401)
T PRK11043         85 SLGMLW-----V--ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSP  143 (401)
T ss_pred             HHHHHH-----h--cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            665432     1  24666666666767766544443334456778865 4544444333333333

>PRK10504 putative transporter; Provisional

Probab=98.29  E-value=5.2e-08  Score=101.31  Aligned_cols=125  Identities=11%  Similarity=0.057  Sum_probs=94.9

Q ss_pred             ccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      -..+.++.+-|.+.+.+|+|+.+...+..+..++..+ .++.|.+.|++|+|.+++++.+...+++.+..+     .  +
T Consensus        24 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~--~   96 (471)
T PRK10504         24 LDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL-----S--G   96 (471)
T ss_pred             HhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-----h--C
Confidence            3445666788888999999999998877777787654 778999999999999999998887777765321     1  2


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~  161 (423)
                      +.+.+.+..++.|.|.+...........+.+|+ +||++.|+......+++.+-
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  150 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLG  150 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            466677777888888887766666777788984 68998888776666655443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.29  E-value=8.6e-08  Score=99.07  Aligned_cols=139  Identities=9%  Similarity=-0.015  Sum_probs=94.4

Q ss_pred             cCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHh-hhhcccccc-c----c-ccccchhhhhhhhHHHHH
Q 014518           13 NNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIAR-LGVAKDLGD-S----V-GFLAGSLCEVLPIWGALL   84 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~-i~~a~~vG~-~----~-g~~~G~l~D~~gP~~vl~   84 (423)
                      ..||+...+......+... -..++.+.|+++++++.+++|... ..++...+. +    + .++.|.+.||+|+|.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   90 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLI   90 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHH
Confidence            3455543333333333332 345789999999999999988654 322222222 2    2 467899999999999999


Q ss_pred             HHHhhhhhcceeeeeeeeCCCCCchHH--------HHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccc
Q 014518           85 VGALQNFIGYGWVWLIVTGRAPVLPLW--------AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAG  155 (423)
Q Consensus        85 iG~~~~~~Gy~~~~l~~~g~i~~~~~~--------~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~G  155 (423)
                      ++.+...++..+...+     +  +++        .+++.-++.|.|.+....++.....++|| ++||.+.++......
T Consensus        91 ~~~~~~~~~~~l~~~~-----~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~  163 (434)
T PRK15075         91 VTLSIMASGTLLIAFV-----P--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ  163 (434)
T ss_pred             HHHHHHHHHHHHHHhC-----C--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence            9999877776664321     1  232        35666778888888888878788889997 679999988766554


Q ss_pred             hhh
Q 014518          156 LGG  158 (423)
Q Consensus       156 LSa  158 (423)
                      ++.
T Consensus       164 ~g~  166 (434)
T PRK15075        164 VAV  166 (434)
T ss_pred             HHH
Confidence            443

>PRK12382 putative transporter; Provisional

Probab=98.26  E-value=2.6e-07  Score=93.60  Aligned_cols=128  Identities=15%  Similarity=0.011  Sum_probs=91.9

Q ss_pred             ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceee-eeeeeCCCCCch
Q 014518           32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWV-WLIVTGRAPVLP  109 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~-~l~~~g~i~~~~  109 (423)
                      ....++.+..+++++|+|.+|+..+..+..++..+ .++.|.+.||+|+|.++.+|.+...++.... +..+.......+
T Consensus        32 ~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (392)
T PRK12382         32 GLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFK  111 (392)
T ss_pred             HHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHH
Confidence            33345555578999999999999988888888755 8999999999999999999887765543221 111111111235


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGA  159 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaa  159 (423)
                      ++.+.+.-++.|.|.+....++.....+.+| ++||.+.|+.-....++..
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~  162 (392)
T PRK12382        112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALA  162 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHH
Confidence            6777777788888888877777777778886 7899999987655444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.25  E-value=2.5e-08  Score=104.11  Aligned_cols=150  Identities=18%  Similarity=0.208  Sum_probs=114.6

Q ss_pred             cCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      ++||..+.+........+. .+..+...|++++.+|+|+.+.+.+.....+|..+ +++.|.+.||+|+|.+++++.+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4566655555555444443 33556677999999999999999988777888766 789999999999999999999888


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      .+|...+.+.       .++|.+.+..++.|.+.+..+.++.....++|| ++||.+.|+......+++.+-..+...+.
T Consensus        96 ~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893         96 SVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8887764431       257777778888888888888888888889998 56999999998888887766655554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.25  E-value=7e-08  Score=94.14  Aligned_cols=133  Identities=23%  Similarity=0.283  Sum_probs=112.4

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ..+.++.+.+.+.+++|.|+++.+.+.....++..+ .++.|.+.||+|+|..+.++.+...++..++.+.       ++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~   86 (352)
T cd06174          14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SS   86 (352)
T ss_pred             hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------cc
Confidence            456677788889999999999999999988898866 7899999999999999999999998888876554       25


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      +|.+.+..++.|.+.+....+......+++|+ +|+++.++.....++++.+-..+...+.+
T Consensus        87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777888888999999999888899999986 89999999998888888776666555543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.22  E-value=1.3e-07  Score=103.02  Aligned_cols=127  Identities=16%  Similarity=0.094  Sum_probs=99.2

Q ss_pred             ccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeee--eCCC-----
Q 014518           34 LFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIV--TGRA-----  105 (423)
Q Consensus        34 ~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~--~g~i-----  105 (423)
                      .++.--++++++++++.+|...|..+.++|..+ .++.|++.||.|++..+.+|.++..+|-+++.+.-  .|+.     
T Consensus        51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~  130 (633)
T TIGR00805        51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT  130 (633)
T ss_pred             HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence            345556789999999999999999999999966 78999999999999999999999888887765541  0000     


Q ss_pred             -----------------------------------C--CchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCee
Q 014518          106 -----------------------------------P--VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVV  147 (423)
Q Consensus       106 -----------------------------------~--~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vv  147 (423)
                                                         .  ...++.+.+.-++.|.|.+..++....-...|+| ++||...
T Consensus       131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~  210 (633)
T TIGR00805       131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI  210 (633)
T ss_pred             ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence                                               0  1124456677889999999999999999999997 5789888


Q ss_pred             EeeccccchhhHH
Q 014518          148 GILKGFAGLGGAI  160 (423)
Q Consensus       148 gilk~~~GLSaaI  160 (423)
                      |+..+...++.++
T Consensus       211 ~i~~~~~~iG~~l  223 (633)
T TIGR00805       211 GILESIAVFGPAF  223 (633)
T ss_pred             HHHHHHHHhhhHH
Confidence            8766666555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.22  E-value=6.8e-08  Score=97.81  Aligned_cols=121  Identities=15%  Similarity=0.155  Sum_probs=91.7

Q ss_pred             cccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHH
Q 014518           35 FGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAM  113 (423)
Q Consensus        35 Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l  113 (423)
                      .+.+-|++++++|+|.+|...+..+..+|..+ .++.|.+.||+|+|.++.+|.+...+|+.+...     .  +++|.+
T Consensus        25 ~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~-----~--~~~~~l   97 (381)
T PRK03633         25 LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL-----M--VGFWSW   97 (381)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h--ccHHHH
Confidence            44567888889999999999999888999866 788999999999999999999998888765332     1  246666


Q ss_pred             hhheeeecCCceeeehhhhhhhhhcC-CCCCCCeeEeeccccchhhHHHH
Q 014518          114 CILIFVGNNGETYFNTAALVSCVQNF-PKSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       114 ~~f~~l~g~g~~~~~ta~l~t~~~nF-P~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      .+..++.|.+.+...........+.. |++||.+.|+......++.++-.
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  147 (381)
T PRK03633         98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQ  147 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677778877766554444444555 47899998887777777666543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.17  E-value=2.5e-07  Score=95.52  Aligned_cols=142  Identities=11%  Similarity=-0.046  Sum_probs=91.3

Q ss_pred             HhhhhcCcchhHHHHHHHHhhccc-ccccccchhhhhhccC---cchhHHHhhh---hcccccccc-ccccchhhhhhhh
Q 014518            8 FVSFFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLN---YNQKQIARLG---VAKDLGDSV-GFLAGSLCEVLPI   79 (423)
Q Consensus         8 ~~~~~~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~---~sq~~l~~i~---~a~~vG~~~-g~~~G~l~D~~gP   79 (423)
                      ..+...+||..++.+.+......- .+.++.-++.+++.++   .+..|...++   .+.-+|.-+ +++.|.+.||+|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Gr   92 (432)
T PRK10406         13 TSSDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGR   92 (432)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            345567787666665444443331 3446677788999874   5555432222   223333334 6689999999999


Q ss_pred             HHHHHHHHhhhhhcceeeeeeeeC-CCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEe
Q 014518           80 WGALLVGALQNFIGYGWVWLIVTG-RAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGI  149 (423)
Q Consensus        80 ~~vl~iG~~~~~~Gy~~~~l~~~g-~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgi  149 (423)
                      |.++.++.+...++.....++-+- .+...+.+.+.++-++.|.|.+....++.....+++| ++||.+.++
T Consensus        93 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~  164 (432)
T PRK10406         93 KKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF  164 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH
Confidence            999999999987777664432110 0000123467777788999999888888888888887 678865443

>PRK10133 L-fucose transporter; Provisional

Probab=98.17  E-value=6.4e-08  Score=100.72  Aligned_cols=128  Identities=18%  Similarity=0.215  Sum_probs=100.4

Q ss_pred             cccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        33 Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      -.-+.+-|++|+.+|+|.+|...+.+...+|..+ +++.|.+.||+|+|.++.+|.+...+|..++..+  ..  .++++
T Consensus        43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~--~~--a~~~~  118 (438)
T PRK10133         43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA--AE--IMNYT  118 (438)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--Hh--cCCHH
Confidence            3445678999999999999999988888888866 8899999999999999999999999998763211  11  23577


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCCCCCC-CeeEeeccccchhhHHHHHH
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFPKSRG-PVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG-~vvgilk~~~GLSaaI~s~i  164 (423)
                      .+++..++.|.|.+..++++-.-..+..|++|+ ...++..++.++++.+=..+
T Consensus       119 ~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~  172 (438)
T PRK10133        119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999888877766666676665 46777777777766555333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.16  E-value=1.6e-07  Score=98.66  Aligned_cols=114  Identities=14%  Similarity=0.119  Sum_probs=93.3

Q ss_pred             hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeec
Q 014518           43 KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGN  121 (423)
Q Consensus        43 k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g  121 (423)
                      +..+++|.+|-++|=.+...|..+ -+|+|.++||+|+|.++.++++...++.+++=++..-     ..|.+++.=++.|
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-----~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-----GFYLLLVLRFLQG  139 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHhH
Confidence            668999999999988889999977 5688999999999999999999988888874222221     2335567778889


Q ss_pred             CCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518          122 NGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       122 ~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .+.+..+.+.-.-..||+| ++|++.++++.++.-+|..+-
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~  180 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIIT  180 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888888999997 789999999888886665554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.10  E-value=6.4e-08  Score=106.96  Aligned_cols=177  Identities=16%  Similarity=0.145  Sum_probs=126.9

Q ss_pred             cCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      +.+|.+++...+..+..|. ....+..-|.+++.++++..+..++..+..+|..+ .+++|.+.|++|+|.+++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4457666666666555554 23456677889999999999999998888899866 678999999999999999998887


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      .++..+..+     .  +++|.+.++-++.|+|.+.....+.......+| ++||.+.+++-.+..+++.+-..+...+.
T Consensus       243 ~i~~ll~af-----a--~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       243 GFFAFFSSF-----V--QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHH-----H--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776655332     1  246677778888889888877778888888898 57999999999888888777655443332


Q ss_pred             CC-------------CccceeeeeeechhhhhhhheeeEe
Q 014518          170 AP-------------DHANLIFMVAVGPAMVVIALMFIIR  196 (423)
Q Consensus       170 ~~-------------~~~~fllfla~~~~~v~~~~~~fvr  196 (423)
                      +.             .....++.+..+|.++.++..+++.
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lP  355 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMP  355 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence            10             1122333444456666666555553

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.10  E-value=3.3e-07  Score=91.18  Aligned_cols=131  Identities=13%  Similarity=0.033  Sum_probs=87.0

Q ss_pred             ccccccchhhhhhccCc--chhHHHhhhhcccccc------ccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeC
Q 014518           32 GYLFGSISPVIKSSLNY--NQKQIARLGVAKDLGD------SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTG  103 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~--sq~~l~~i~~a~~vG~------~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g  103 (423)
                      .|.++..++.+++++..  +.++..++.+....+.      ..+++.|.+.||+|+|.+++++.+...++..+...+-+-
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~   88 (394)
T TIGR00883         9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSY   88 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCCh
Confidence            35667788888888764  3344444333222222      125789999999999999999999988887765543221


Q ss_pred             CC-CCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHH
Q 014518          104 RA-PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       104 ~i-~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      .. .....+.+++.-++.|.|.+....++.....+++| ++||.+.++......++..+-.
T Consensus        89 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~  149 (394)
T TIGR00883        89 ATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAA  149 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHH
Confidence            10 00012345666678888888888888888888996 5798887777666666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.03  E-value=7.7e-07  Score=91.80  Aligned_cols=140  Identities=18%  Similarity=0.174  Sum_probs=99.8

Q ss_pred             chhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceee
Q 014518           49 NQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYF  127 (423)
Q Consensus        49 sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~  127 (423)
                      ++.+...+..+..+|..+ ++..|.+.||+|+|+++.++.++..+|..+...+-..    .+++.+++.-++.|.|.+..
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY----NNFWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccc
Confidence            344566788888899988 6679999999999999999999998888775444322    14667788888899998877


Q ss_pred             ehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc--CC-Cccceeeeeeechhhhhhhhe
Q 014518          128 NTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH--AP-DHANLIFMVAVGPAMVVIALM  192 (423)
Q Consensus       128 ~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f--~~-~~~~fllfla~~~~~v~~~~~  192 (423)
                      .+.+.+-....=| ++||....+...+..++..+-..+...+-  .+ +....++.+...|.++.++..
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~  188 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR  188 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7766666666665 68999999999998777655444433331  11 234555556666665544444

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.97  E-value=2.9e-06  Score=89.75  Aligned_cols=121  Identities=18%  Similarity=0.151  Sum_probs=91.3

Q ss_pred             hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhh-hhhcceeeeeeeeCCCCCchHHHHhhheee
Q 014518           42 IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ-NFIGYGWVWLIVTGRAPVLPLWAMCILIFV  119 (423)
Q Consensus        42 Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~-~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l  119 (423)
                      +++.+++.+.|++.+.++..+|=.+ .+|+|++.||+|+...+..-++. ..+|.+..|      .  .++|.+++.-++
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------~--~s~~~~ialr~l  143 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------V--HSFPGLIALRFL  143 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------H--hhhHHHHHHHHH
Confidence            8899999999999999999999865 77999999999965444433333 223333322      2  146677777777


Q ss_pred             ecCCceeeehhhhhhhhhcC-CCCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          120 GNNGETYFNTAALVSCVQNF-PKSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       120 ~g~g~~~~~ta~l~t~~~nF-P~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      .|.-++...-++....-.+| +++||+..|+.-+..++|+.+=+.|.+++++
T Consensus       144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            77766666666666666666 5789999999999999999999999999875

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.96  E-value=5.1e-07  Score=92.01  Aligned_cols=143  Identities=12%  Similarity=0.098  Sum_probs=100.2

Q ss_pred             hcCcchhHHHHHHHHhhcc-cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhh
Q 014518           12 FNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ   89 (423)
Q Consensus        12 ~~~Rw~~l~a~~~i~l~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~   89 (423)
                      .++.|+..+.....+.++. ....+...-+++++++|+|+.+.+.+.++..+|..+ .++.|.+.||+|+|.+++++.+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            3555555555555554433 233344445679999999999999977777888755 68899999999999999999988


Q ss_pred             hhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHH
Q 014518           90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus        90 ~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~  161 (423)
                      ..++..+...     .  +++|.+.+..++.|.+.+.....+.....++||+ +|+.+.++.....+++..+-
T Consensus        88 ~~~~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  153 (406)
T PRK15402         88 FILTCLAILL-----A--QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLG  153 (406)
T ss_pred             HHHHHHHHHH-----H--ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence            7777665332     1  2456666777777787777666666667788985 56777777766665554443

>PRK10054 putative transporter; Provisional

Probab=97.93  E-value=5.7e-07  Score=92.02  Aligned_cols=145  Identities=10%  Similarity=0.025  Sum_probs=94.4

Q ss_pred             cCcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccc-ccccccchhhhhhhhHHHHHHHHhhhh
Q 014518           13 NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNF   91 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~iG~~~~~   91 (423)
                      +|+...+..+.++ ...|....++..++.+++++|+|.++..++.....++. ...++.|.+.||+|+|.+++++.+...
T Consensus         6 ~~~~~~l~~~~~~-~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLL-LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Confidence            3334444443333 35555556677888999999999999999777666655 447899999999999999999998887


Q ss_pred             hcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518           92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus        92 ~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      +++.++.  +.   +  +.|.+.+..++.+.+.+.+..+.-.-..+.+| ++||++.|+.-+...++.++-..+.
T Consensus        85 ~~~~~~~--~~---~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~  152 (395)
T PRK10054         85 SGFIAIP--LV---N--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG  152 (395)
T ss_pred             HHHHHHH--HH---h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776532  11   1  34444333333333333333333333346665 5699999988888777666554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.91  E-value=4e-07  Score=93.33  Aligned_cols=144  Identities=14%  Similarity=0.230  Sum_probs=109.4

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccc-ccccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      .+|+.+.+..++.++.+.  .++..+..+++.+|+|-.+...+.....++. ..+++.|.+.||+|+|.++.++.+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~   88 (400)
T PRK11646         11 GKYFLLIDNMLVVLGFFV--VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA   88 (400)
T ss_pred             cHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH
Confidence            457777777777666544  4777888899999999999999777666665 4478999999999999999999999888


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHH
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      +..++..     .  +++|.+++..++.|.+.+....+......+.+| ++||.+.|+......++..+-..+..
T Consensus        89 ~~~~~~~-----~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g  156 (400)
T PRK11646         89 GFATMAI-----A--HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGS  156 (400)
T ss_pred             HHHHHHH-----h--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776432     1  256777777778888877766666666678886 68999999987777776655544443

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.84  E-value=7.8e-07  Score=88.73  Aligned_cols=117  Identities=10%  Similarity=0.057  Sum_probs=67.7

Q ss_pred             ccchhhhhhccCcchhHHHhhhhcccccc-ccccccchhhhhhhhHHHHHH-HHhhhhhcceeeeeeeeCCCCCchHHHH
Q 014518           36 GSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLV-GALQNFIGYGWVWLIVTGRAPVLPLWAM  113 (423)
Q Consensus        36 s~yS~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~i-G~~~~~~Gy~~~~l~~~g~i~~~~~~~l  113 (423)
                      ...+..+++++|+|..+...+.++..++. ..+++.|.+.||+|+|.++++ +.+...++..+.+.       .+++|.+
T Consensus        18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~l   90 (375)
T TIGR00899        18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW-------NRNYFLL   90 (375)
T ss_pred             hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh-------cchHHHH
Confidence            44555689999999999999877666655 458899999999998876555 44443444443322       1246665


Q ss_pred             hhheeeecCCceeeehhhhhhhhhcCCCCCCCe----eEeeccccchhhHH
Q 014518          114 CILIFVGNNGETYFNTAALVSCVQNFPKSRGPV----VGILKGFAGLGGAI  160 (423)
Q Consensus       114 ~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~v----vgilk~~~GLSaaI  160 (423)
                      ++..++.+.+.+.... +..+..+.++++|+..    .++..+..+++..+
T Consensus        91 ~~~~~~~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  140 (375)
T TIGR00899        91 LVLGVLLSSFASTANP-QLFALAREHADRTGREAVMFSSVMRAQISLAWVI  140 (375)
T ss_pred             HHHHHHHHhhhhhhHH-HHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH
Confidence            5554444443333332 3334444443333332    34444444444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.84  E-value=7.2e-07  Score=90.47  Aligned_cols=136  Identities=10%  Similarity=0.002  Sum_probs=92.1

Q ss_pred             chhHHHHHHHHhhcc-cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhc
Q 014518           16 WLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIG   93 (423)
Q Consensus        16 w~~l~a~~~i~l~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~G   93 (423)
                      |+.+...+.+..+.. ..+.+...-|.+.+.+|+|..+...+..+..++..+ .++.|.+.||+|+|.++.++.+...++
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~   86 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            344444444443333 223344445778889999999999988888888765 788999999999999999999888877


Q ss_pred             ceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhh
Q 014518           94 YGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGG  158 (423)
Q Consensus        94 y~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSa  158 (423)
                      .......       ++++.+++..++.|.+.+.....+.....+.+| ++|+.+.++......++.
T Consensus        87 ~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (394)
T PRK11652         87 TLVALFA-------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSP  145 (394)
T ss_pred             HHHHHHH-------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            7664321       246677777777777776554444444455676 567877766554444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.81  E-value=9.6e-07  Score=101.68  Aligned_cols=143  Identities=11%  Similarity=0.018  Sum_probs=95.7

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhH--HHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ--IARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~--l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      +.+..+..+.++...+...+ ..+..+.++..++.+++.  ...+.++..++..+ ++++|.+.||+|+|.+++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGH-KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHH-HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHH
Confidence            34444544444433222222 234455566666776555  45566666666644 789999999999999998887665


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .++.++..++..  .  .++|.+.+..++.|.+.+....+......+++| ++||.+.|+.-....++..+-
T Consensus        88 ~~~~~~~~~~~~--~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg  155 (1146)
T PRK08633         88 VGLTLLIVLAYY--L--GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAG  155 (1146)
T ss_pred             HHHHHHHHHHHH--H--ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHH
Confidence            555444322211  1  246778888888899999998888888899997 679999999888777655443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.81  E-value=3.1e-06  Score=87.88  Aligned_cols=131  Identities=16%  Similarity=0.090  Sum_probs=98.9

Q ss_pred             ccccccch---hhhhhcc--------CcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeee
Q 014518           32 GYLFGSIS---PVIKSSL--------NYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWL   99 (423)
Q Consensus        32 ~Y~Fs~yS---~~Lk~~l--------~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l   99 (423)
                      .|..++++   +.+++.+        +++..+.+.+.+...+|..+ .++.|.+.||+|+|.+++++.++..+|..+..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~  104 (479)
T PRK10077         25 GYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAW  104 (479)
T ss_pred             CcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            44445555   4566666        88889999988888888866 778999999999999999999998777665443


Q ss_pred             ee---eCCC--CCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHH
Q 014518          100 IV---TGRA--PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       100 ~~---~g~i--~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      +.   ....  +...++.+.++-++.|.+.+.....+.....+.+| ++||.+.|+.-....++..+-.
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~  173 (479)
T PRK10077        105 PEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY  173 (479)
T ss_pred             hccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence            21   1111  11124556677788999999988888888899998 5699999998888878876643

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.70  E-value=6.7e-06  Score=84.78  Aligned_cols=137  Identities=16%  Similarity=0.190  Sum_probs=95.2

Q ss_pred             hhhcCcchhHHHHHHHHhhccccc-ccccchhhhhhccCcchhHHHhhhh-ccccccccccccchhhhhhhhHHHHHHHH
Q 014518           10 SFFNNRWLVFVAAMWIQSCAGIGY-LFGSISPVIKSSLNYNQKQIARLGV-AKDLGDSVGFLAGSLCEVLPIWGALLVGA   87 (423)
Q Consensus        10 ~~~~~Rw~~l~a~~~i~l~~Gt~Y-~Fs~yS~~Lk~~l~~sq~~l~~i~~-a~~vG~~~g~~~G~l~D~~gP~~vl~iG~   87 (423)
                      +++++||+.|++-.+...+.|... .|+........-|+ +-+..+..+. ..-+..-+|+++=++.|++|-|..+++|+
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            688999999999999888887643 45555566677788 3333333333 23344456888889999999999999999


Q ss_pred             hhhhhcceeeeeeeeCCCCCchHHH--HhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeE
Q 014518           88 LQNFIGYGWVWLIVTGRAPVLPLWA--MCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVG  148 (423)
Q Consensus        88 ~~~~~Gy~~~~l~~~g~i~~~~~~~--l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvg  148 (423)
                      +++.+|...=-.+..-.+++ ..|+  +-.=..+.+..+.++..-.-+-+..||| ++|-+|..
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~-~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~  179 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPP-LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATV  179 (480)
T ss_pred             HHHHHHHHHhhhccCccccc-cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhh
Confidence            99999998754455544432 4552  2233345566666776666688899995 67876553

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.63  E-value=3e-06  Score=84.68  Aligned_cols=135  Identities=14%  Similarity=0.124  Sum_probs=96.4

Q ss_pred             ccccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCC
Q 014518           30 GIGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPV  107 (423)
Q Consensus        30 Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~  107 (423)
                      +..+.+..+.|. +++++|+++.+...+.....++..+ +++.|.+.||+|+|..+.++.+...++..+++......  .
T Consensus       220 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  297 (385)
T TIGR00710       220 GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG--L  297 (385)
T ss_pred             HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc--c
Confidence            344555556565 4568999999998877767777755 77899999999999999988887777766554322111  1


Q ss_pred             chHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHH
Q 014518          108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       108 ~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      .+.+.+....++.|.|.+...........+.+|++||++.++......+.+++.+.+-.
T Consensus       298 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       298 GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            23334444455566777777777778888899999999999887776677777776644

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.62  E-value=6.1e-06  Score=84.70  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=100.9

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      +-|...++-.....+.|  ..++..+..+++++|+|++|..++.....++..+ .++.|.+.||+|+|.+++++.....+
T Consensus        11 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWS--SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             chHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34555444444444443  4578888889999999999999966666666644 88999999999999998887665444


Q ss_pred             cceeeee-eeeCCCCCchHHHHhhhe-eeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518           93 GYGWVWL-IVTGRAPVLPLWAMCILI-FVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus        93 Gy~~~~l-~~~g~i~~~~~~~l~~f~-~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      +...+.. .+.... ....+..+... .+.+.+... ....+.+-..+++++||.+.|.......++.++-..+.....+
T Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  166 (420)
T PRK09528         89 LFGPFFIYVFAPLL-QYNILLGAIVGGIYLGFGFLA-GAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN  166 (420)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcc-chhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence            3321111 111100 00121111111 111111111 1112223335567889999999998888888777666444433


Q ss_pred             CCccceeeeeeechhhhhhhheeeEeccC
Q 014518          171 PDHANLIFMVAVGPAMVVIALMFIIRPVG  199 (423)
Q Consensus       171 ~~~~~fllfla~~~~~v~~~~~~fvr~~~  199 (423)
                      -+.. ..+.+.....+++++..+++++++
T Consensus       167 ~~~~-~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        167 INPQ-INFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             cCch-HhHHHHHHHHHHHHHHHhcccccc
Confidence            2222 222223334444555555555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.54  E-value=8.2e-06  Score=79.52  Aligned_cols=134  Identities=22%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             ccccccccchhhhhhc-cCcchhHHHhhhhcccccccc-ccccchhhhhhhhHH-HHHHHHhhhhhcceeeeeeeeCCCC
Q 014518           30 GIGYLFGSISPVIKSS-LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWG-ALLVGALQNFIGYGWVWLIVTGRAP  106 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~-l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~-vl~iG~~~~~~Gy~~~~l~~~g~i~  106 (423)
                      .....+..|.+.+.++ +|++..+...+.....++..+ .++.|.+.||+|+|. ++.++.+...+++.++...-     
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----  263 (352)
T cd06174         189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP-----  263 (352)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-----
Confidence            3345555666666655 499999999988888888866 678999999999999 99999999888877654321     


Q ss_pred             CchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       107 ~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                        +.|.+....++.+.+.+..+........+.+| ++||++.|+......+++.+...+.....+
T Consensus       264 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         264 --SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             --cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              24556667777788888888888899999998 789999999999999998888888777764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.52  E-value=1.1e-05  Score=82.32  Aligned_cols=138  Identities=15%  Similarity=0.056  Sum_probs=87.1

Q ss_pred             ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeee---eeeCCC--
Q 014518           32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWL---IVTGRA--  105 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l---~~~g~i--  105 (423)
                      .+....|.+.+.+++|++..+...+.....++..+ .++.|.+.||+|+|..+.++.+...++..++..   ......  
T Consensus       300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (481)
T TIGR00879       300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK  379 (481)
T ss_pred             CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            44566778888889999997776666555555544 677899999999999999988877776655541   111110  


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      .....+......+..+.+.++. ......+.+.||. +||++.|+.-....+++++...+...+.+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~  444 (481)
T TIGR00879       380 SSGNVAIVFILLFIAFFAMGWG-PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE  444 (481)
T ss_pred             chhHHHHHHHHHHHHHHHcccc-CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0012222111112222222221 1122334677875 79999999999999998888877666554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.51  E-value=4.3e-06  Score=86.17  Aligned_cols=125  Identities=14%  Similarity=0.104  Sum_probs=88.9

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhccccccc-cccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~-~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      +...+.---|++.+.+|.|+++.+......-+|.. ..++.|.+.||+|+|.+++++.+...+|......+       ++
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~  103 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------TS  103 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------CC
Confidence            33444444456788999999999985555556664 47889999999999999999988877776553321       25


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s  162 (423)
                      ++.+.+.-++.|.+.++....+.......||+ +|+.+.++.-...+++..+-.
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  157 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGP  157 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777777776555555556678885 578888888777777765543

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.46  E-value=5.2e-06  Score=86.97  Aligned_cols=138  Identities=13%  Similarity=0.035  Sum_probs=105.9

Q ss_pred             hHHHHHHHHhhcccccccccchhhhhhccCcchhH-HHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcce
Q 014518           18 VFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ-IARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYG   95 (423)
Q Consensus        18 ~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~-l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~   95 (423)
                      .++.|++ ....-.--..++-.|.|++.+|+|.+| .+.|..+...|-.+ -+|+|++.||+|+|+++.++++...+-..
T Consensus        29 ~~~lC~f-GF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~  107 (511)
T TIGR00806        29 VLYLCFY-GFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWL  107 (511)
T ss_pred             HHHHHHH-HHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3334444 233334445666788999999999999 77777777776644 78999999999999999999988655555


Q ss_pred             eeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518           96 WVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        96 ~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      ++..     .  .+++.|.+.-++.|.+.+... |+.....++|| ++||+++|+..+..-+|.++-..+
T Consensus       108 L~~f-----a--~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L  169 (511)
T TIGR00806       108 LLLL-----G--TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL  169 (511)
T ss_pred             HHHH-----H--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4322     1  257788888899999999888 99999999998 679999999988888777665433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.43  E-value=3.9e-05  Score=80.84  Aligned_cols=124  Identities=10%  Similarity=-0.023  Sum_probs=89.4

Q ss_pred             ccchhhhhhc--cCcchhHHHhhhhcccccccc-ccccchhhhh-hhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           36 GSISPVIKSS--LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        36 s~yS~~Lk~~--l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~-~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      +....-++++  +|+++.|...+.....++..+ .+++|.+.|| +|+|.++++|.+...+|+.++.+.     +  +++
T Consensus        31 ~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----~--~~~  103 (475)
T TIGR00924        31 GILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----I--YPD  103 (475)
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----c--cHh
Confidence            3344456777  999999999966666666655 6789999999 899999999999999999876542     1  233


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCCCC----CCCeeEeeccccchhhHHHHHHHH
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFPKS----RGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~----RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      .+.+..++.|.|.+.+..+......+.||++    |+.+.++.-....+++++=..+..
T Consensus       104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g  162 (475)
T TIGR00924       104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG  162 (475)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence            4444445567788777766666777889743    888888766666666655444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.43  E-value=6.4e-06  Score=95.27  Aligned_cols=148  Identities=8%  Similarity=-0.070  Sum_probs=94.0

Q ss_pred             hcCcchhHHHHHHHHhhccccccccc--ch-hhhhhccCcchhHH-Hhhhhcccccc-ccccccchhhhhhhhHHHHHH-
Q 014518           12 FNNRWLVFVAAMWIQSCAGIGYLFGS--IS-PVIKSSLNYNQKQI-ARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLV-   85 (423)
Q Consensus        12 ~~~Rw~~l~a~~~i~l~~Gt~Y~Fs~--yS-~~Lk~~l~~sq~~l-~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~i-   85 (423)
                      ..+||..+..+-++...+-..+.+.+  +. .++....+.++.++ +++..+.-++. .+++++|.+.||+|+|.++.+ 
T Consensus         9 ~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~   88 (1140)
T PRK06814          9 KSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKIL   88 (1140)
T ss_pred             hccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHH
Confidence            35567777666666554433333332  21 24444555544453 33444444554 558899999999999876421 


Q ss_pred             -HHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHH
Q 014518           86 -GALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus        86 -G~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~  163 (423)
                       .+.....+...+  ++   . ..++|.+.+..++.|.+.+++..+......+++| ++|+.+.|+.-+...++..+-..
T Consensus        89 ~~~~~~~~~~~~~--~~---~-~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~  162 (1140)
T PRK06814         89 KFAEIGIAALAIY--GF---H-LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTI  162 (1140)
T ss_pred             HHHHHHHHHHHHH--HH---H-HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH
Confidence             221111221111  11   0 1368888999999999999999999999999997 56899999999988887776644


Q ss_pred             HH
Q 014518          164 VY  165 (423)
Q Consensus       164 i~  165 (423)
                      +.
T Consensus       163 l~  164 (1140)
T PRK06814        163 IG  164 (1140)
T ss_pred             HH
Confidence            43

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.40  E-value=2.7e-05  Score=80.80  Aligned_cols=126  Identities=18%  Similarity=0.248  Sum_probs=95.5

Q ss_pred             hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeee
Q 014518           42 IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG  120 (423)
Q Consensus        42 Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~  120 (423)
                      +++.+|++..+...+.....++..+ .++.|.+.||+|+|.++.+|.+...+|+.+++..+....   +.|.+....++.
T Consensus       282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~  358 (485)
T TIGR00711       282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDT---PFLAIALPQFIR  358 (485)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHH
Confidence            4567899999998877766777655 678999999999999999999998888887664433222   344445556677


Q ss_pred             cCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          121 NNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       121 g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      |.|.+..........+..+| ++||.+.|+.-....+++++-..+...++.
T Consensus       359 g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       359 GFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78887777666677778898 679999999988888888777666665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.40  E-value=9.7e-05  Score=78.23  Aligned_cols=141  Identities=15%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             CcchhHHHHHHHHhhccccc-cc-ccchhhhhhccCcchhHHHhhhhcccccc-ccccccchhhhh-hhhHHHHHHHHhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGY-LF-GSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEV-LPIWGALLVGALQ   89 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y-~F-s~yS~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~-~gP~~vl~iG~~~   89 (423)
                      +.|..+.....+..+-..+| .. +....-+++.+|+++++...+..+..... .+.+++|.+.|| +|+|.++++|.+.
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence            34555555555555544333 22 33445567889999999988655444344 446789999999 9999999999999


Q ss_pred             hhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCC---CCCeeEeeccccchhhHH
Q 014518           90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKS---RGPVVGILKGFAGLGGAI  160 (423)
Q Consensus        90 ~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~---RG~vvgilk~~~GLSaaI  160 (423)
                      ..+|+.+..++-+    .  ...+.+..++.+.|.+.+.........+.||++   |+.+.++.-....+++++
T Consensus        91 ~~~g~~~~~~~~~----~--~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~  158 (489)
T PRK10207         91 LAIGYFMTGMSLL----K--PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI  158 (489)
T ss_pred             HHHHHHHHHHhcc----c--hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence            9999988665321    1  112323445567888877766677778899754   366666665566666553

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.38  E-value=1.2e-05  Score=82.37  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=89.4

Q ss_pred             chhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhh
Q 014518           38 ISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI  115 (423)
Q Consensus        38 yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~  115 (423)
                      +-|.+ ++.+|++..+...+.....+|..+ +++.|++.|+.+++..+.++.+...++..++..     .  ++++.+++
T Consensus       245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----~--~~~~~~~~  317 (417)
T PRK10489        245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-----M--PMWILAVL  317 (417)
T ss_pred             hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-----c--chHHHHHH
Confidence            33444 555999998888876666677655 678899999988887888887777777655432     1  23445555


Q ss_pred             heeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcCC-Cccceeeeeeechhhhhhhhee
Q 014518          116 LIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAP-DHANLIFMVAVGPAMVVIALMF  193 (423)
Q Consensus       116 f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~~-~~~~fllfla~~~~~v~~~~~~  193 (423)
                      ..++.|.+.+...........+.+|+ .||++.|+.....-++.++=..+.-.+.+. +....++..+....+++++...
T Consensus       318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        318 CLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            55556666655544444556678885 599999998665544443333333332221 2233333344444444444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.35  E-value=2.7e-06  Score=87.16  Aligned_cols=124  Identities=17%  Similarity=0.036  Sum_probs=89.2

Q ss_pred             ccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeee-eeeCCCCCchHH
Q 014518           34 LFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWL-IVTGRAPVLPLW  111 (423)
Q Consensus        34 ~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l-~~~g~i~~~~~~  111 (423)
                      ....+-|.+.++++.+..+...+.....++..+ .++.|.+.||+|+|.++.++.++..+++.++.. .+.   ..+++|
T Consensus        35 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~  111 (417)
T PRK10489         35 LLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL---PEPSLL  111 (417)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc---CCCcHH
Confidence            334556777778889999999988888888866 688999999999999998888776666654322 111   123466


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHH
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAI  160 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI  160 (423)
                      .+.+..++.|.+.+....+......+.+| ++||.+.++.....+++..+
T Consensus       112 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  161 (417)
T PRK10489        112 AIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVI  161 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHh
Confidence            66666666677766666666667778887 56899998877666655544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.32  E-value=4.8e-05  Score=77.68  Aligned_cols=130  Identities=17%  Similarity=0.182  Sum_probs=105.7

Q ss_pred             ccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHh
Q 014518           36 GSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC  114 (423)
Q Consensus        36 s~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~  114 (423)
                      .+-=|++|+.+++|+.|.+.+-++--.|=.+ ++|.|++.+|+|-|.-+++|..+..+|..++|-+-..+.    +-..+
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~----y~~FL  108 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKS----YGFFL  108 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhh----HHHHH
Confidence            4567999999999999999988765444322 889999999999999999999999999999886655543    44556


Q ss_pred             hheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          115 ILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       115 ~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      .-.++.+.|.+..+||+-.-...+.|. +.-.=..++.+++||++.+--.+-..+.
T Consensus       109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738         109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            666788999999999999999999975 4444578899999999998866655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.30  E-value=1.4e-05  Score=84.23  Aligned_cols=163  Identities=11%  Similarity=0.067  Sum_probs=86.5

Q ss_pred             hcccccccccchhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh-cceeeeeeeeCC
Q 014518           28 CAGIGYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI-GYGWVWLIVTGR  104 (423)
Q Consensus        28 ~~Gt~Y~Fs~yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~-Gy~~~~l~~~g~  104 (423)
                      .....|.+..|.|.. ++.+|++..+...+.....+|..+ .+..|.+.||+|+|.++.++.+...+ ++..+.....+ 
T Consensus       262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-  340 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN-  340 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            345667777888874 567899988776666666677766 45689999999999998888764332 23222211111 


Q ss_pred             CCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcCCCccce-eeeeee
Q 014518          105 APVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANL-IFMVAV  182 (423)
Q Consensus       105 i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~~~~f-llfla~  182 (423)
                          +.+.+.+..++.+.+.+.............||. .||+++|+.-...-+.+.+...+.....+...+.+ ..++..
T Consensus       341 ----~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~  416 (490)
T PRK10642        341 ----VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLM  416 (490)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence                222222222222222222212222233357985 69998887555433444333333222222111111 111233


Q ss_pred             chhhhhhhheeeE
Q 014518          183 GPAMVVIALMFII  195 (423)
Q Consensus       183 ~~~~v~~~~~~fv  195 (423)
                      .+.+++++..+++
T Consensus       417 ~~~~i~~~~~~~~  429 (490)
T PRK10642        417 VVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHh
Confidence            4556666666655

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.30  E-value=0.00017  Score=76.56  Aligned_cols=142  Identities=16%  Similarity=0.066  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHhhcc-cccccccchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhh-hhHHHHHHHHhhhhh
Q 014518           17 LVFVAAMWIQSCAG-IGYLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGALLVGALQNFI   92 (423)
Q Consensus        17 ~~l~a~~~i~l~~G-t~Y~Fs~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~-gP~~vl~iG~~~~~~   92 (423)
                      ..+.....++.+.. +.|....+-+ -|++.+|+++.+...+.....++.++ .+++|.+.||+ |+|.++++|+++..+
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            33333444444433 4555544444 45677999999999876666666665 66899999999 999999999999999


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC---CCCCeeEeeccccchhhHHHHHH
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK---SRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~---~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      |+.++..  .+.  .+....+.+.....|+|....+..+  ...+.||+   .|+++.++.-....+++.+-..+
T Consensus        89 g~lll~~--~~~--~~~~~~l~l~li~iG~G~~~~~~~a--lv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l  157 (493)
T PRK15462         89 GHVVLGA--SEI--HPSFLYLSLAIIVCGYGLFKSNVSC--LLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA  157 (493)
T ss_pred             HHHHHHH--hhc--chhHHHHHHHHHHHhcccccccHHH--HHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence            9876532  111  1122222222222334333322223  34677985   48888887777666655444333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.28  E-value=5e-05  Score=80.15  Aligned_cols=127  Identities=10%  Similarity=0.057  Sum_probs=94.5

Q ss_pred             hhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhhe
Q 014518           39 SPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILI  117 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~  117 (423)
                      ...+++.+|+|..+....-....++..+ +++.|.+.||+|+|.++.+|.++..+|+.++...  +.. . +.|....+.
T Consensus       283 ~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~--~~~-~-~~~~~~~~~  358 (495)
T PRK14995        283 AQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT--DFS-T-QQWQAWGLM  358 (495)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh--cCC-C-chHHHHHHH
Confidence            3457888999999998866666666644 6789999999999999999998888888765432  211 1 345556677


Q ss_pred             eeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          118 FVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       118 ~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      ++.|.|.+..........+.+.| ++||.+.++......+++++=..+...++
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889988888888888889998 56899999887777666655554444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.26  E-value=2.2e-05  Score=79.78  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ..|.+..|.|.+-+.+|++..+...+.....++..+ .++.|.+.||+|+|..+.++.+...++...+..     .+  +
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~--~  307 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA-----AP--S  307 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----cC--c
Confidence            345555667777777899999988877666677655 778999999999998887766655555443221     11  2


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      .+.+.+..++.|.+....++.......+.+| ++||++.|+.-...++++++-..+.-.+.+
T Consensus       308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            3334444444444444445555556677887 579999999999999988776666555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.21  E-value=7.5e-05  Score=79.21  Aligned_cols=127  Identities=13%  Similarity=0.029  Sum_probs=81.3

Q ss_pred             ccccc-chhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhh-hhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           33 YLFGS-ISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        33 Y~Fs~-yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~-~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      |.+.. ....+++.+|+|+++...+........+. .+++|.+.|| +|+|.++++|.+...+|+.++.++-.      .
T Consensus        38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~------~  111 (500)
T PRK09584         38 YGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH------D  111 (500)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc------c
Confidence            44444 34556789999999887755443333333 4689999999 59999999999999999887654311      1


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCCCC---CCCeeEeeccccchhhHHHHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPKS---RGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~---RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      .+.+.+...+.+.|.+...........+.||++   |+.+.++.-....+++++-..+.
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~  170 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT  170 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence            223333334556677766665556678889854   33455655555666665443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.21  E-value=2.1e-05  Score=80.17  Aligned_cols=126  Identities=13%  Similarity=0.041  Sum_probs=72.9

Q ss_pred             cccccccchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           31 IGYLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        31 t~Y~Fs~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      ..+.|..+.| -+++.+|+++++...+.....++..+ .++.|.+.||+|+|..+.++.+...+....+.  +.+     
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~~-----  303 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML--MAH-----  303 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH--HHh-----
Confidence            3444555555 46778999999888754443343333 57899999999999888777665444432221  111     


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~  163 (423)
                      +.+.+.++.++.+.+.+...........+.+|++||++.++.-....+++++-..
T Consensus       304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~  358 (393)
T PRK15011        304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGS  358 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            1222222223332222222222223345678999999999876666655544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.20  E-value=9.6e-05  Score=77.70  Aligned_cols=162  Identities=11%  Similarity=0.026  Sum_probs=86.2

Q ss_pred             cccccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhH-------HHHHHHHhhhhhcceeeee
Q 014518           29 AGIGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIW-------GALLVGALQNFIGYGWVWL   99 (423)
Q Consensus        29 ~Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~-------~vl~iG~~~~~~Gy~~~~l   99 (423)
                      .+..+.+..+.|. +++.+|++..+...+.....++..+ .+++|.+.||++.|       ..+.+..++  .|...+.+
T Consensus       265 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l--~~i~~~~~  342 (476)
T PLN00028        265 FGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTL--GGVFCIWL  342 (476)
T ss_pred             HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHH--HHHHHHHh
Confidence            3333444444443 5778899999988877766676655 67899999999865       232232222  22222222


Q ss_pred             eeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcCCCccce--e
Q 014518          100 IVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANL--I  177 (423)
Q Consensus       100 ~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~~~~f--l  177 (423)
                      ...+.. ...+..++++.+..+.+.+    +.........|++||++.|+.-....+++.+...++..   .+..+|  -
T Consensus       343 ~~~~~~-~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~---~~~~~y~~~  414 (476)
T PLN00028        343 GRANSL-GAAIVVMILFSIFVQAACG----ATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFT---GSSYSTETG  414 (476)
T ss_pred             cccchH-HHHHHHHHHHHHHHHHhhh----hhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHh---cCCccHhhH
Confidence            222211 0012122222222111111    11111123358899999999977666788787766531   122122  1


Q ss_pred             eeeeechhhhhhhheeeEeccCC
Q 014518          178 FMVAVGPAMVVIALMFIIRPVGG  200 (423)
Q Consensus       178 lfla~~~~~v~~~~~~fvr~~~~  200 (423)
                      +++.....+++.+..+++|.+..
T Consensus       415 f~~~~~~~~i~~~~~~~~~~~~~  437 (476)
T PLN00028        415 ISLMGVMIIACTLPVAFIHFPQW  437 (476)
T ss_pred             HHHHHHHHHHHHHHHHheeccch
Confidence            22223455677788888886554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.20  E-value=2.6e-05  Score=82.09  Aligned_cols=133  Identities=14%  Similarity=0.040  Sum_probs=87.1

Q ss_pred             hHHHHHHHHhhccccccccc---chhhhhhccCcchhH-HHhhh-----hcccccccc-ccccchhhhhhhhHHHHHHHH
Q 014518           18 VFVAAMWIQSCAGIGYLFGS---ISPVIKSSLNYNQKQ-IARLG-----VAKDLGDSV-GFLAGSLCEVLPIWGALLVGA   87 (423)
Q Consensus        18 ~l~a~~~i~l~~Gt~Y~Fs~---yS~~Lk~~l~~sq~~-l~~i~-----~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~   87 (423)
                      .++++.+....-+  |.|.+   ..+.+++.++.+.++ .+.++     .+.-+|..+ +++.|.+.||+|+|.++.++.
T Consensus        17 ~~~~~~~g~~~~~--~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         17 AITAASLGNAMEW--FDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3333333333333  44444   467778887644432 12222     223355544 778999999999999999999


Q ss_pred             hhhhhcceeeeeeeeCCCCCchH---HHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeecccc
Q 014518           88 LQNFIGYGWVWLIVTGRAPVLPL---WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFA  154 (423)
Q Consensus        88 ~~~~~Gy~~~~l~~~g~i~~~~~---~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~  154 (423)
                      ++..++-++..++-+  .....+   ++++++-++.|.|.+....++.....++|| ++||.+.++.....
T Consensus        95 ~l~~i~~~~~a~~~~--~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~  163 (490)
T PRK10642         95 VIMSISTFCIGLIPS--YATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGS  163 (490)
T ss_pred             HHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence            998887776433211  100001   246777888999999999999999999997 68999988876443

>PRK03545 putative arabinose transporter; Provisional

Probab=97.18  E-value=3.1e-05  Score=78.58  Aligned_cols=115  Identities=12%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             hhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhhe
Q 014518           39 SPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILI  117 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~  117 (423)
                      .+-+++++|+|+.+...+.....++..+ .++.|.+.||+|.|.. .++......+...+.. .   .  .+.+.+++..
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~-~---~--~~~~~~~~~~  301 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLP-A---A--NSEWHLSVLS  301 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHH-H---h--chHHHHHHHH
Confidence            4556778999999888766555556544 6778999999998765 4555444444332211 1   1  1344555555


Q ss_pred             eeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHH
Q 014518          118 FVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAI  160 (423)
Q Consensus       118 ~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI  160 (423)
                      ++.|.+.......-.....+..|++||.+.|+.-+..-++.++
T Consensus       302 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~  344 (390)
T PRK03545        302 IFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGA  344 (390)
T ss_pred             HHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            5555555444444444555678999999888777655444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.16  E-value=3.2e-05  Score=78.37  Aligned_cols=109  Identities=13%  Similarity=0.024  Sum_probs=68.8

Q ss_pred             hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhH----HHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhh
Q 014518           41 VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIW----GALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI  115 (423)
Q Consensus        41 ~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~----~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~  115 (423)
                      ...+++|.|.+|...+..+..++..+ +++.|.+.||+|++    ..+.++++...+++.       .  ...++|++.+
T Consensus        29 ~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~l~i   99 (382)
T PRK11128         29 VWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFW-------F--GAHSFWLLFV   99 (382)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH-------H--hcccHHHHHH
Confidence            45566899999999977777777644 88899999999972    233334433222221       1  1235777776


Q ss_pred             heeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhH
Q 014518          116 LIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGA  159 (423)
Q Consensus       116 f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaa  159 (423)
                      ...+.+.+.+....+ ..+.+..++++|+.+.|.......++.+
T Consensus       100 ~~~l~g~~~~~~~~~-~~a~~~~~~~~~~~a~~~~~~~~~lg~~  142 (382)
T PRK11128        100 AIGLFNLFFSPLVPL-TDALANTWQKQIGLDYGKVRLWGSIAFV  142 (382)
T ss_pred             HHHHHHHHHcccccH-HHHHHHHHHhhccCCcchHHHHHHHHHH
Confidence            666666655554443 3344556678899888776655544433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.16  E-value=3.2e-05  Score=78.47  Aligned_cols=112  Identities=13%  Similarity=-0.001  Sum_probs=68.4

Q ss_pred             hhhhhccCcchhHHHhhhhcccccc-ccccccchhhhhhhhH----HHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHh
Q 014518           40 PVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIW----GALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC  114 (423)
Q Consensus        40 ~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~----~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~  114 (423)
                      |.+.+.+|+|.+|+..+.....+.. ..+++.|.+.||+|+|    .++.++.++..+.+.       ...  .++|.+.
T Consensus        28 ~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~-------~~~--~~~~~l~   98 (382)
T TIGR00902        28 PAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS-------AGA--HNAWLLF   98 (382)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-------Hhh--hhHHHHH
Confidence            3777789999999999766655665 4488899999999964    333344433222111       111  2466655


Q ss_pred             hheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHH
Q 014518          115 ILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       115 ~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~  161 (423)
                      +...+.+.+.+.... ...+.+++++++||.+.|..-....++..+-
T Consensus        99 ~~~~l~~~~~~~~~p-~~~al~~~~~~~~~~~~g~~~~~~slG~~~g  144 (382)
T TIGR00902        99 IAIGLFALFFSAGMP-IGDALANTWQKQFGLDYGKVRLIGSAAFIIG  144 (382)
T ss_pred             HHHHHHHHHHccchh-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence            544443333333222 2333456778899999998777766655554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.11  E-value=6e-05  Score=76.23  Aligned_cols=121  Identities=18%  Similarity=0.066  Sum_probs=79.9

Q ss_pred             ccccchhhhhhccCcchhHH-----Hhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCC
Q 014518           34 LFGSISPVIKSSLNYNQKQI-----ARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPV  107 (423)
Q Consensus        34 ~Fs~yS~~Lk~~l~~sq~~l-----~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~  107 (423)
                      .+..+-|.+.+++|++..+.     ..+.....++..+ +++.|.+.||+|+|.++.++.+...++..+++.     .  
T Consensus        32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~--  104 (408)
T PRK09874         32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL-----A--  104 (408)
T ss_pred             HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH-----H--
Confidence            34556677777888886553     3444444455534 778999999999999999999887777765432     1  


Q ss_pred             chHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHH
Q 014518          108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       108 ~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      .++|.+.+..++.|.+.++. ..+.....+.+| ++||.+.|+......++..+-.
T Consensus       105 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  159 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGP  159 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHH
Confidence            24556666555666655443 334444556776 6789999988776666554433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.10  E-value=3.1e-05  Score=80.01  Aligned_cols=120  Identities=12%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             cccccccchhh-hhhccCcchhHHHhhhhccccc-cccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           31 IGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLG-DSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        31 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG-~~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      ..|.+..|-|. +++.+|+++++...+.....++ ...+++.|.+.||+|+|.++.++++...+....+..... .... 
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~-  335 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NVSS-  335 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cCCc-
Confidence            45667777776 5677899998887644433333 344778899999999998887776643322221111111 1111 


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccc
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGF  153 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~  153 (423)
                      +++.+.+ ..+...+.++..........+.||. .||++.|+.-+.
T Consensus       336 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        336 PYAAFGL-VMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            2222211 1111111111111122334578985 699999998654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.07  E-value=1.4e-05  Score=81.85  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=95.4

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      +.+..+..+.++...+...+.+.+  +.+.+.++.++.++..+..+..++..+ +++.|.+.||+|+|.+++++.+...+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAA--IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence            345667777777666555554433  445677889999999888777777755 88999999999999999999988766


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchh
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLG  157 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLS  157 (423)
                      +...+...     .+  .   .+.-++.|.+.++.+.+......+.+| ++|+++.|++-....++
T Consensus        81 ~~~~~~~~-----~~--~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~  136 (393)
T PRK11195         81 GCLLMLFG-----IH--P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAA  136 (393)
T ss_pred             HHHHHHHH-----HH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            65543211     11  1   122245788899999988889999998 67999999986655443

>TIGR00897 2A0118 polyol permease family

Probab=97.05  E-value=3e-05  Score=79.21  Aligned_cols=137  Identities=12%  Similarity=0.050  Sum_probs=77.8

Q ss_pred             ccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHH-HHHhhhhhcceeeeeeeeCCCCC
Q 014518           30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALL-VGALQNFIGYGWVWLIVTGRAPV  107 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~-iG~~~~~~Gy~~~~l~~~g~i~~  107 (423)
                      ...|.+..|.|..-+.+|++..+...+.....++..+ .++.|.+.||+|+|..+. .+.+...++...+++...  ...
T Consensus       236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~  313 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ--HFG  313 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH--ccC
Confidence            3456777788877777999998877655444555544 667899999999876543 332222222222111110  001


Q ss_pred             chHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       108 ~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      .+.+.+.++.++.|.+.+.. ........+.+|++||++.|+.-....+++.+-..+...++
T Consensus       314 ~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  374 (402)
T TIGR00897       314 HSFAVALIIAIALGIFLAGY-VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFI  374 (402)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12333333444444444332 22222223456899999999988888877666554544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.04  E-value=9.2e-05  Score=73.09  Aligned_cols=124  Identities=8%  Similarity=-0.090  Sum_probs=79.2

Q ss_pred             hhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhhee
Q 014518           40 PVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIF  118 (423)
Q Consensus        40 ~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~  118 (423)
                      +...+.++++.++...+.....++..+ .++.|.+.||+|+|..+.++.+...+++.++...-.  .   ..+.+....+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~  303 (377)
T TIGR00890       229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM--L---NDVLFLATVA  303 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc--c---hhHHHHHHHH
Confidence            344456888888877766666666655 677999999999999999998888888766443211  1   1112211122


Q ss_pred             eecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          119 VGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       119 l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      +.+.+.+...+.......+.+| ++||++.|+......+++++-..+....
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  354 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHA  354 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            2233333333322334456786 5799999999888888877766555444

>TIGR00889 2A0110 nucleoside transporter

Probab=97.03  E-value=2.5e-05  Score=80.79  Aligned_cols=175  Identities=11%  Similarity=0.112  Sum_probs=99.2

Q ss_pred             chhHHHHHHHHhhcccccccccchhhhhhccCcch--------hHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHH
Q 014518           16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQ--------KQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVG   86 (423)
Q Consensus        16 w~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq--------~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG   86 (423)
                      |..+++.+.++......|   .|.+..-++.++++        ++...+.....++..+ .++.|.+.||+|+|.++.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~  287 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITN---IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS  287 (418)
T ss_pred             eeHHHHHHHHHhHHHHHH---HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            344444444444443343   33344334456654        3334444433444433 57899999999999999999


Q ss_pred             HhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeec-cccchhhHHHHHH
Q 014518           87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILK-GFAGLGGAILTQV  164 (423)
Q Consensus        87 ~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk-~~~GLSaaI~s~i  164 (423)
                      .+...+++.++... ....  ..++.+.+..++.|.+.+..+.++..-..+++| ++||++.|+.- ...++++++-..+
T Consensus       288 ~~~~~v~~~l~~~~-~~~~--~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l  364 (418)
T TIGR00889       288 LVAWALRFGFFAYG-DPEY--FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL  364 (418)
T ss_pred             HHHHHHHHHHHHHc-Ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99887776554332 1111  123444455556666666556666666788998 57999999996 5566666554444


Q ss_pred             HHHhc---CCCc----cceeeeeeechhhhhhhheeeEe
Q 014518          165 YTMIH---APDH----ANLIFMVAVGPAMVVIALMFIIR  196 (423)
Q Consensus       165 ~~~~f---~~~~----~~fllfla~~~~~v~~~~~~fvr  196 (423)
                      .-..+   +++.    +.-+++.++...+.+++..+++|
T Consensus       365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33332   2111    12223344445555555666665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.96  E-value=2.3e-05  Score=65.82  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=76.6

Q ss_pred             cccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcC
Q 014518           61 DLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNF  139 (423)
Q Consensus        61 ~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nF  139 (423)
                      .+|..+ +++.|.+.||+|+|..+.++.+...++..++...       .+.|.+.+..++.|.+.+..+........+.+
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIY   80 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence            344433 7789999999999999999998888777654322       24666677777788888777777767778889


Q ss_pred             C-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          140 P-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       140 P-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      | ++||.+.++......+++.+-..+.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        81 PPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            8 56999999998888888877666555443

>PRK09952 shikimate transporter; Provisional

Probab=96.95  E-value=0.00023  Score=73.89  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=92.6

Q ss_pred             cCcchhHHHHHHHHhhccc-ccccccchhh-hhhcc--CcchhHHHhhhh-----cccccccc-ccccchhhhhhhhHHH
Q 014518           13 NNRWLVFVAAMWIQSCAGI-GYLFGSISPV-IKSSL--NYNQKQIARLGV-----AKDLGDSV-GFLAGSLCEVLPIWGA   82 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~-Lk~~l--~~sq~~l~~i~~-----a~~vG~~~-g~~~G~l~D~~gP~~v   82 (423)
                      .+||..+..+......-+- ...++..++. +++.+  +.++. ..++..     ++-++.-+ +++.|.+.||+|+|.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            3445555544444444332 3334445553 45544  66665 344432     22233434 5778999999999999


Q ss_pred             HHHHHhhhhhcceeeeeeeeCCCCCc---hHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhh
Q 014518           83 LLVGALQNFIGYGWVWLIVTGRAPVL---PLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGG  158 (423)
Q Consensus        83 l~iG~~~~~~Gy~~~~l~~~g~i~~~---~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSa  158 (423)
                      ++++.+...++..+..++  ......   ..+.+.++-++.|.|.+..+.++.....+++| ++||.+.+......+++.
T Consensus        97 l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952         97 LMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             HHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            999998877776554332  111000   02246667778999999988888888889998 578999888887777766


Q ss_pred             HHHH
Q 014518          159 AILT  162 (423)
Q Consensus       159 aI~s  162 (423)
                      .+-.
T Consensus       175 ~l~~  178 (438)
T PRK09952        175 LLST  178 (438)
T ss_pred             HHHH
Confidence            5443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.93  E-value=5.8e-05  Score=76.91  Aligned_cols=139  Identities=13%  Similarity=-0.031  Sum_probs=87.6

Q ss_pred             cccccccchhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           31 IGYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        31 t~Y~Fs~yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      ..+.|..+.|.+ ++.+|++..+.........++..+ .++.|.+.||++++..+.+|.+...+|..++.......  ..
T Consensus       230 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~  307 (406)
T PRK15402        230 PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS--SH  307 (406)
T ss_pred             HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc--cc
Confidence            344555556654 677899988877654444445544 56789999999999999999887777766544322111  11


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcCC
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAP  171 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~  171 (423)
                      +.+.+.+..++.+.|.+.............-|++||.+.++.-....++.++=+.+....+..
T Consensus       308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        308 AYLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            343444555556666665544333333344578999999998776666666555555555444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.92  E-value=0.00025  Score=70.45  Aligned_cols=121  Identities=10%  Similarity=0.004  Sum_probs=76.9

Q ss_pred             hhcccccccccchhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhh-hcceeeeeeeeC
Q 014518           27 SCAGIGYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF-IGYGWVWLIVTG  103 (423)
Q Consensus        27 l~~Gt~Y~Fs~yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~-~Gy~~~~l~~~g  103 (423)
                      ++....|.+..|.|.. ++.+|+++.+...+.....++..+ .++.|.+.||+|+|.++.+++.... +++..+. .+.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~  308 (394)
T TIGR00883       230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM-ALLD  308 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            3344455666666665 478899999988866666666655 5679999999999988776554433 3322211 1111


Q ss_pred             CCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeec
Q 014518          104 RAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILK  151 (423)
Q Consensus       104 ~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk  151 (423)
                      .   .+.+.+....++.+.+.+..+........+.+|+ +||++.|+.-
T Consensus       309 ~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  354 (394)
T TIGR00883       309 S---GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAY  354 (394)
T ss_pred             C---CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehh
Confidence            1   1344444445555566656666666667788985 6999998853

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=96.91  E-value=5.7e-05  Score=75.35  Aligned_cols=123  Identities=13%  Similarity=-0.087  Sum_probs=83.3

Q ss_pred             hhhhhhccCcchhHHHhhhhccccccccccccchhhhhh-----hhHHHH-HHHHhhhhhcceeeeeeeeCCCCCchHHH
Q 014518           39 SPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVL-----PIWGAL-LVGALQNFIGYGWVWLIVTGRAPVLPLWA  112 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~-----gP~~vl-~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~  112 (423)
                      -|.+.+++|+|.+|+..+++..-.. .++++.|.+.||+     |+|..+ +++.+...+....+.  +...  ..++|.
T Consensus        11 ~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~--~~~~--~~~l~~   85 (356)
T TIGR00901        11 LPYWLRSKNVSLKTIGFFSLVGLPY-SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS--FLVP--STDLPL   85 (356)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH--cCCc--chhHHH
Confidence            4667778899999999987654333 3488999999998     666654 455544444332322  2111  124556


Q ss_pred             HhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHH
Q 014518          113 MCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       113 l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      +....++.+.+.+..+.+.-.-..+.+| ++||.+.|+.-....++..+-..+..
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~  140 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLAL  140 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666667777777777777889996 78999999988888877666555543

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.90  E-value=8.2e-05  Score=76.33  Aligned_cols=157  Identities=10%  Similarity=0.033  Sum_probs=86.7

Q ss_pred             cccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHH
Q 014518           35 FGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAM  113 (423)
Q Consensus        35 Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l  113 (423)
                      +..|..+..+..+.+.++...+.....++..+ .++.|.+.||+|+|..+.++.++..+++.++.++     +  +.|.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----~--~~~~~  318 (420)
T PRK09528        246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----T--GPLEV  318 (420)
T ss_pred             HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----c--cHHHH
Confidence            55555554444467777777765555555544 6789999999999999999888877776665431     2  23344


Q ss_pred             hhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEee-ccccchhhHHHHHHHHHhcCC-Cccceeeeeeechhhhhhh
Q 014518          114 CILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGIL-KGFAGLGGAILTQVYTMIHAP-DHANLIFMVAVGPAMVVIA  190 (423)
Q Consensus       114 ~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgil-k~~~GLSaaI~s~i~~~~f~~-~~~~fllfla~~~~~v~~~  190 (423)
                      .....+.+.+.+........-..+.+|+ .|+++.+.. -...++|+.+-..+.-...+. ....-++.++....+..++
T Consensus       319 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~  398 (420)
T PRK09528        319 SILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLI  398 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHH
Confidence            4444455554444433333444567875 467665542 223445554444333222221 2233334444444444445


Q ss_pred             heeeEecc
Q 014518          191 LMFIIRPV  198 (423)
Q Consensus       191 ~~~fvr~~  198 (423)
                      ...+.|.+
T Consensus       399 ~~~~~~~~  406 (420)
T PRK09528        399 SVFTLSGD  406 (420)
T ss_pred             HHHHhcCC
Confidence            55555543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.90  E-value=7.4e-05  Score=77.57  Aligned_cols=131  Identities=16%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             ccchhhhhhccCcchhHHHhhhhcccccc-ccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHh
Q 014518           36 GSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC  114 (423)
Q Consensus        36 s~yS~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~  114 (423)
                      ..|.|.+.+..|+++.+.........++. ...+++|.+.||+|+|.++++|.+...+++..++......... ....++
T Consensus       291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~-~~~~~~  369 (479)
T PRK10077        291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-IVALLS  369 (479)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCccc-HHHHHH
Confidence            45778888888988765554443333333 3367899999999999999999999888887765443322211 111222


Q ss_pred             hheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          115 ILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       115 ~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      +.....+++..+ .........+.|| ++||++.|+.-+...+++.+.+.++-..
T Consensus       370 ~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        370 MLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             HHHHHHHHhccc-cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            222222233222 1234455677898 5799999999998888888877776543

>PRK03893 putative sialic acid transporter; Provisional

Probab=96.89  E-value=0.00035  Score=72.99  Aligned_cols=122  Identities=21%  Similarity=0.290  Sum_probs=76.6

Q ss_pred             chhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhh
Q 014518           38 ISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI  115 (423)
Q Consensus        38 yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~  115 (423)
                      +-|. +++.+|++..+...+.....+|..+ .+++|.+.||+|+|.++.++.+...++..++...  .   ..+.|.+..
T Consensus       297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~  371 (496)
T PRK03893        297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI--G---GANVWVLGL  371 (496)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c---ccHHHHHHH
Confidence            4444 4568999999999987777777755 6789999999999998888876655554432221  1   112333322


Q ss_pred             heee-ecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518          116 LIFV-GNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       116 f~~l-~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      ..++ +..+.+. .........+.+| ++||++.|+.-+...+++.+-..+.
T Consensus       372 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~  422 (496)
T PRK03893        372 LLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILG  422 (496)
T ss_pred             HHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHH
Confidence            2222 1112221 2223334557788 5799999998888888766554443

>TIGR00901 2A0125 AmpG-related permease

Probab=96.88  E-value=0.00011  Score=73.31  Aligned_cols=116  Identities=15%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             chhhhhhccCcchhHHHhhh-hcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeee-eeCC---CCCchHH
Q 014518           38 ISPVIKSSLNYNQKQIARLG-VAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI-VTGR---APVLPLW  111 (423)
Q Consensus        38 yS~~Lk~~l~~sq~~l~~i~-~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~-~~g~---i~~~~~~  111 (423)
                      +.+-+++ +|++.++...+. ..+.++..+ .+++|.+.||+|+|..+.+++++..+++..+... ....   +..+..|
T Consensus       232 ~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (356)
T TIGR00901       232 TTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL  310 (356)
T ss_pred             HHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence            4444555 899999987644 444444444 5678999999999999998888877766543221 1110   1112456


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeecccc
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFA  154 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~  154 (423)
                      .++...++.+.+.+..+.+...-..+.+| ++||++.|+..+..
T Consensus       311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            66666666777778888888888888997 56898877665443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.88  E-value=7.3e-05  Score=75.86  Aligned_cols=143  Identities=14%  Similarity=0.036  Sum_probs=96.9

Q ss_pred             chhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcc
Q 014518           16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGY   94 (423)
Q Consensus        16 w~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy   94 (423)
                      |..+++..+.+.+.+..|.   |.+..-+++|++.++...+-..+.++..+ ++++|.+.||+|+|..+.+|.+...+++
T Consensus       208 ~~~l~~~~l~~~~~~~~~~---~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~  284 (382)
T TIGR00902       208 LRFLAAVCLIQGAHAAYYG---FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            4555555555555444444   44444445899999998865556666644 7789999999999999999999998888


Q ss_pred             eeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeec-cccchhhHHHHHHHHHhc
Q 014518           95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILK-GFAGLGGAILTQVYTMIH  169 (423)
Q Consensus        95 ~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk-~~~GLSaaI~s~i~~~~f  169 (423)
                      ..+.     ..  ++.|.+.....+-|.+-+....+++.-.-++ | ++|++..|+.- ...|+|..+-+.+.-..+
T Consensus       285 ~~~~-----~~--~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~  353 (382)
T TIGR00902       285 AIIG-----AI--EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY  353 (382)
T ss_pred             HHHH-----hH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7641     12  2456666667777776777666665555555 6 57888888864 356777776665544443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15075 citrate-proton symporter; Provisional

Probab=96.85  E-value=9e-05  Score=76.59  Aligned_cols=119  Identities=14%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             ccccccccchhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhh-hcceeeeeeeeCCCC
Q 014518           30 GIGYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF-IGYGWVWLIVTGRAP  106 (423)
Q Consensus        30 Gt~Y~Fs~yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~-~Gy~~~~l~~~g~i~  106 (423)
                      ...|....|.|.. ++.+|+++.+...+.....++..+ .+.+|.+.||+|+|.++.++.+... .++..+......  +
T Consensus       252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~  329 (434)
T PRK15075        252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA--P  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC--C
Confidence            3455566777774 556899998877776666666544 5679999999999998888765432 233211111111  1


Q ss_pred             CchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeecc
Q 014518          107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKG  152 (423)
Q Consensus       107 ~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~  152 (423)
                        +++.+.+...+.+.+.+...........+.+|. .||++.|+.-+
T Consensus       330 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~  374 (434)
T PRK15075        330 --SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYS  374 (434)
T ss_pred             --chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHH
Confidence              221111111111222222333333445677875 69999887543

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.83  E-value=8.4e-05  Score=74.05  Aligned_cols=118  Identities=17%  Similarity=0.130  Sum_probs=73.7

Q ss_pred             hhhhhccCcchhHHHhhhhccccccc-cccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhhee
Q 014518           40 PVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIF  118 (423)
Q Consensus        40 ~~Lk~~l~~sq~~l~~i~~a~~vG~~-~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~  118 (423)
                      .-+++.+|++..+...+.....+... ..++.|.+.||+|+|.++.++.+...+++..+..  .     ++.|.+.....
T Consensus       224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~  296 (375)
T TIGR00899       224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA--D-----NSLWALLMLQL  296 (375)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHH
Confidence            34567789999888765433222222 2567899999999999888887765555543221  1     13444444444


Q ss_pred             eecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHH
Q 014518          119 VGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       119 l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      +.+.+.+...........+.+|++||.+.|+.-....+++++-..+
T Consensus       297 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  342 (375)
T TIGR00899       297 LNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSV  342 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            4455555444444455567789999999998776666555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.81  E-value=3.1e-05  Score=80.88  Aligned_cols=123  Identities=20%  Similarity=0.108  Sum_probs=71.6

Q ss_pred             cccccccchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           31 IGYLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        31 t~Y~Fs~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      ..+.+..|.| -+++.+|+|..+.+.+.....++..+ .+.+|.+.||+|+|....++.....++..++  .+.. .+  
T Consensus       273 ~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~--~~~~-~~--  347 (467)
T PRK09556        273 VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLG--VYQH-AT--  347 (467)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH--HHHh-cC--
Confidence            3455667777 47788999999998877777777766 6689999999998876655443333332111  1111 11  


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhh
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGG  158 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSa  158 (423)
                      +.+.+.+..++.|...............+.+|. +||++.|+..+.-.+.+
T Consensus       348 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g  398 (467)
T PRK09556        348 SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFG  398 (467)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHh
Confidence            222222222223322211111111334488885 69999999876655533

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.79  E-value=0.00033  Score=71.22  Aligned_cols=146  Identities=9%  Similarity=-0.033  Sum_probs=84.1

Q ss_pred             chhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcc
Q 014518           16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGY   94 (423)
Q Consensus        16 w~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy   94 (423)
                      |+......++..+.+...  ...+..+++++|+|.+|...+.....++..+ .++.|.+.||+|+|.+++++.+...+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYF--PFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            555555555555444332  2455567888999999999977777777755 7899999999999999887766555444


Q ss_pred             eeee-eeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHH
Q 014518           95 GWVW-LIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        95 ~~~~-l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      .... +.+.........+..++..++.+.+.+.... +..+.+.+.+++++...|.......++.++-..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~  152 (396)
T TIGR00882        83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAG-AIEAYIEKVSRNSNFEYGKARMFGCVGWALCASI  152 (396)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHHHHhhhhcccccchhhhhcccHHHHHHHH
Confidence            3221 1111111010122223223333333333222 2233334444566667777777777777665555

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.79  E-value=7.6e-05  Score=74.79  Aligned_cols=125  Identities=15%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             ccccccchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh-cceeeeeeeeCCCCCc
Q 014518           32 GYLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI-GYGWVWLIVTGRAPVL  108 (423)
Q Consensus        32 ~Y~Fs~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~-Gy~~~~l~~~g~i~~~  108 (423)
                      .+.+..+.| .+++.+|+++++...+.....++..+ +++.|.+.||+|+|.++.++.+...+ |..++..   +..+ .
T Consensus       210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~-~  285 (377)
T PRK11102        210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVS---ALLD-L  285 (377)
T ss_pred             HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH---HHHh-h
Confidence            444444444 45677899999988866665566544 77899999999999988888765332 2222111   1111 1


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccc-cchhhHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGF-AGLGGAI  160 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~-~GLSaaI  160 (423)
                      +.|.+.+...+.+.+.+.....++....+.+|++||.+.++.... +|+++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~  338 (377)
T PRK11102        286 GFWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIV  338 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence            233322222222222223333334444566899999999886543 4554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.72  E-value=0.00011  Score=74.67  Aligned_cols=149  Identities=13%  Similarity=0.091  Sum_probs=87.5

Q ss_pred             chhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhc-ccccccc-ccccchhhhhhhhHHHHHHHHhhhhhc
Q 014518           16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVA-KDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIG   93 (423)
Q Consensus        16 w~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a-~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~G   93 (423)
                      |..++.....+...+..|.|  .++-+++ .|++.+++..+... +.++..+ .++.|++.||+|+|.++.++.+....+
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~--~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       211 WSLLALALLSAMTAVSGFGL--SKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45555555666666667765  4566766 69999999886443 3345555 468999999999999988877654232


Q ss_pred             ceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC--CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518           94 YGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP--KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus        94 y~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP--~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      .. .+.........++.+.+.....+.+.+.+....+.....++..+  ++||++.++..+..++++.+-..+.-..
T Consensus       288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l  363 (390)
T TIGR02718       288 AL-LWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL  363 (390)
T ss_pred             HH-HHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 22222211111122222222223333333333333334455553  5789999999999888877666554433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.65  E-value=0.00025  Score=74.85  Aligned_cols=137  Identities=15%  Similarity=0.072  Sum_probs=80.5

Q ss_pred             ccccccccchhhhhhccCcchhHHH----------hh--hhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhccee
Q 014518           30 GIGYLFGSISPVIKSSLNYNQKQIA----------RL--GVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGW   96 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~----------~i--~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~   96 (423)
                      -..|....|.|.+-+..|++..+.+          .+  .....++... .+..|.+.||+|+|.+++++.+...++...
T Consensus       302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~  381 (502)
T TIGR00887       302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFV  381 (502)
T ss_pred             HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Confidence            3557777888887778888754211          11  2222334333 356899999999999998888776655444


Q ss_pred             eeeeeeCCCCCch-HHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518           97 VWLIVTGRAPVLP-LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus        97 ~~l~~~g~i~~~~-~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      +...+.. .+... +..++++.+..+.|  +... ...-...-||. .||++.|+.-...-+++++...++-...+
T Consensus       382 l~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       382 LGFAYNH-LSTHGFLAIYVLAQFFANFG--PNAT-TFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             HHHHHHh-cchhHHHHHHHHHHHHHhcC--CCch-hhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence            3332211 11111 11222222222222  1111 11223688995 59999999999988988888777766655

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00900 2A0121 H+ Antiporter protein

Probab=96.64  E-value=0.00023  Score=70.00  Aligned_cols=121  Identities=15%  Similarity=0.053  Sum_probs=86.0

Q ss_pred             chhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhh
Q 014518           38 ISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI  115 (423)
Q Consensus        38 yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~  115 (423)
                      +.|.+ ++.+|++..+...+.....++..+ .++.|++.||.+++..+.++.+...++..++...  .   . +.|.+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~  306 (365)
T TIGR00900       233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--P---P-NFPLFLV  306 (365)
T ss_pred             HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--c---h-hHHHHHH
Confidence            33444 445899999998877777777755 6789999999999998888766655555443322  1   1 2555556


Q ss_pred             heeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518          116 LIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       116 f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      ..++.|.+.+..+........+.+| ++||++.|+......+++++-..+
T Consensus       307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~  356 (365)
T TIGR00900       307 LWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL  356 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777777888998 569999999888777766655443

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.64  E-value=0.00013  Score=77.13  Aligned_cols=175  Identities=14%  Similarity=0.254  Sum_probs=93.4

Q ss_pred             chhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhh-hcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhc
Q 014518           16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLG-VAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIG   93 (423)
Q Consensus        16 w~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~-~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~G   93 (423)
                      |..++...+.+......  ++...+-+.+.+|+|.++...+. +.+.++..+ ++.+|.+.||+|+|..+.++++...++
T Consensus       225 ~~~ll~~~l~~~~~~~~--~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        225 WLILLLIVLYKLGDAFA--MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            55555544444333322  33345566778999999999874 555566655 667999999999988777776654443


Q ss_pred             ceeee-eeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcCC
Q 014518           94 YGWVW-LIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAP  171 (423)
Q Consensus        94 y~~~~-l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~~  171 (423)
                      ...++ +...+    ++.+.+....++.+...++...+.....+...|+ .+|+..|+.-+..++++.+...+.-...+.
T Consensus       303 ~l~~~~l~~~~----~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~  378 (491)
T PRK11010        303 NAGYWLLSITD----KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA  378 (491)
T ss_pred             HHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322 22222    1333332222221111122223333333344453 478888888888888777665443222221


Q ss_pred             -CccceeeeeeechhhhhhhheeeEec
Q 014518          172 -DHANLIFMVAVGPAMVVIALMFIIRP  197 (423)
Q Consensus       172 -~~~~fllfla~~~~~v~~~~~~fvr~  197 (423)
                       .... .+.+.....+++++...++|.
T Consensus       379 ~G~~~-~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        379 HGWPT-FYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             hChHH-HHHHHHHHHHHHHHHHHHHHh
Confidence             1222 223333344555555555564

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.57  E-value=0.00045  Score=68.68  Aligned_cols=121  Identities=20%  Similarity=0.201  Sum_probs=72.5

Q ss_pred             ccccccc-hhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           32 GYLFGSI-SPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        32 ~Y~Fs~y-S~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      .|.+..+ ..-+++.+|+++.+...+.....++..+ .++.|.+.||+|+|....++.++...+..++........ ...
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  319 (366)
T TIGR00886       241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPL-SLA  319 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcc-hHH
Confidence            3444333 3455678899999988766555554444 668999999999988888887777777766554443211 111


Q ss_pred             --HHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchh
Q 014518          110 --LWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLG  157 (423)
Q Consensus       110 --~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLS  157 (423)
                        ++.+.++.+..|.+.+..    ......-+|++||++.|+..+...++
T Consensus       320 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       320 VFIVLFVALFFFSGAGNGST----FALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHhccccchh----hhcchhhchhhcccHHHHHHHhccCC
Confidence              112222333333333322    22223446899999999877655443

>PRK11043 putative transporter; Provisional

Probab=96.56  E-value=0.00033  Score=71.11  Aligned_cols=135  Identities=13%  Similarity=0.092  Sum_probs=81.3

Q ss_pred             hcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCC
Q 014518           28 CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP  106 (423)
Q Consensus        28 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~  106 (423)
                      +.+..+.|..+.|.+.+.+|++.++...+.....++..+ ++..+.+.||++++....++.+...++...+++....  .
T Consensus       215 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  292 (401)
T PRK11043        215 CSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--S  292 (401)
T ss_pred             HHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence            344455666677777777899999988755444445444 5667899999998876655555444443333222111  1


Q ss_pred             CchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHH
Q 014518          107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       107 ~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      .+..+.+.+...+.+.+.+..+.......++.+|++||.+.|+.-+.....+.+...+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  350 (401)
T PRK11043        293 HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLL  350 (401)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHH
Confidence            1123333333334455555555555556678889999999999876544444444333

>PRK10504 putative transporter; Provisional

Probab=96.53  E-value=0.00026  Score=73.62  Aligned_cols=147  Identities=10%  Similarity=0.071  Sum_probs=88.9

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF   91 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~   91 (423)
                      ++|..+..+.++..++..  .+..+.|. ++..+|++..+...+.....++..+ .++.|.+.||+|+|.++.+|.+...
T Consensus       261 ~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~  338 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSG--MLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLA  338 (471)
T ss_pred             cchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            445555554444333221  22333443 3446899998888877666666655 4789999999999999999988777


Q ss_pred             hcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeecccc----chhhHHHHHHHH
Q 014518           92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFA----GLGGAILTQVYT  166 (423)
Q Consensus        92 ~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~----GLSaaI~s~i~~  166 (423)
                      ++..++......   . +.+.+.+..++.|.|.+..+........+.+| ++||.+.|+.....    +++.++.+.+..
T Consensus       339 ~~~~~~~~~~~~---~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        339 LVSLLFMLVALL---G-WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHhcccc---c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765554432111   1 23333333334445555555555566667887 56999999865544    455555554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.46  E-value=0.00081  Score=67.37  Aligned_cols=125  Identities=18%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             cchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh-cceeeeeeeeCCCCCchHHHHh
Q 014518           37 SISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI-GYGWVWLIVTGRAPVLPLWAMC  114 (423)
Q Consensus        37 ~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~-Gy~~~~l~~~g~i~~~~~~~l~  114 (423)
                      .+.+-+++++|++..+...+.....++..+ .++.|.+.||+|.|..+.++.+...+ .+.++.  . .   . +.|.+.
T Consensus       260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~-~---~-~~~~~~  332 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA--I-G---A-NVAVLG  332 (405)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH--h-C---C-chHHHH
Confidence            345567778999999998877666677655 67899999999999988887765422 222111  1 1   1 233322


Q ss_pred             hheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          115 ILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       115 ~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      +..++.+...............+.+| ++||++.|+......+++.+-..+....
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            22122111111111222233457787 5799999998877777666655544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.44  E-value=0.00014  Score=75.56  Aligned_cols=132  Identities=17%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             cccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhh--hhHHH-HHHHHhhhhhcceeeeeeeeCCC
Q 014518           31 IGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL--PIWGA-LLVGALQNFIGYGWVWLIVTGRA  105 (423)
Q Consensus        31 t~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~--gP~~v-l~iG~~~~~~Gy~~~~l~~~g~i  105 (423)
                      ..|.+..|-|. +++..|++..+.+.+.....++..+ .++.|.+.||+  ++|.. ..+...+..++..++++...+  
T Consensus       268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~--  345 (452)
T PRK11273        268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAG--  345 (452)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhccc--
Confidence            33455555555 6667899999888766666666654 67899999998  55432 222233333444443332211  


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHH
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTM  167 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~  167 (423)
                       . ....++. .++.|.+........-.-..+.+| +.||++.|+......+++++.+....+
T Consensus       346 -~-~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        346 -N-PTVDMAC-MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             -C-hHHHHHH-HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence             1 1111111 111111111000011112357888 579999999987766776665444333

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.44  E-value=0.00015  Score=76.76  Aligned_cols=154  Identities=13%  Similarity=0.022  Sum_probs=93.1

Q ss_pred             hHhhhhcCcchhHHHHHHHHhhcccccc-cccchhhhhhccCcchhHHHhhhhccccccccccccchhhhhh-----hhH
Q 014518            7 RFVSFFNNRWLVFVAAMWIQSCAGIGYL-FGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVL-----PIW   80 (423)
Q Consensus         7 ~~~~~~~~Rw~~l~a~~~i~l~~Gt~Y~-Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~-----gP~   80 (423)
                      ..+....+|+..+   ..+...+|..+. .+---|..-+..|.|.+|+..++..+-. -.+.++.|.+.||+     |+|
T Consensus         5 ~l~~~~~~~~~~~---~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grr   80 (491)
T PRK11010          5 YLRIFQQPNSAIL---LILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRR   80 (491)
T ss_pred             HHHHHcccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCc
Confidence            3344445554443   333344444332 1122233333457777777775432222 13578899999999     877


Q ss_pred             HH-HHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhh
Q 014518           81 GA-LLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGG  158 (423)
Q Consensus        81 ~v-l~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSa  158 (423)
                      .. ++++.+...++..++..  ..  +..++|.+.+..++.+.+.+..+.+.-....++|| ++||.+.|+......++.
T Consensus        81 r~~ll~~~i~~~~~~~~~a~--~~--~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~  156 (491)
T PRK11010         81 RGWLLATQLLLLVAIAAMGF--LE--PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM  156 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHH--cC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence            65 55666555455444322  11  12246666666667777888888888888889997 789999999988777776


Q ss_pred             HHHHHHHHHh
Q 014518          159 AILTQVYTMI  168 (423)
Q Consensus       159 aI~s~i~~~~  168 (423)
                      .+-..+...+
T Consensus       157 llg~~l~~~l  166 (491)
T PRK11010        157 LVSGGLALWL  166 (491)
T ss_pred             HHHHHHHHHH
Confidence            6555444333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.40  E-value=0.00025  Score=71.84  Aligned_cols=132  Identities=12%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             hhhcCc--chhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHH
Q 014518           10 SFFNNR--WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVG   86 (423)
Q Consensus        10 ~~~~~R--w~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG   86 (423)
                      +..++|  |..+++..+.+.+.+..|.   |.+..-+++|+++.+..++-....++..+ +++.|.+.||+|+|.++.++
T Consensus       200 ~i~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~  276 (382)
T PRK11128        200 ALLKEPTVWRFLLCVSLLQGSHAAYYG---FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS  276 (382)
T ss_pred             HHHcChhHHHHHHHHHHHHHHhHhHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            344444  4445555555555444433   33444355899999988866666665544 67899999999999999999


Q ss_pred             HhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeec
Q 014518           87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILK  151 (423)
Q Consensus        87 ~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk  151 (423)
                      .+...+++.++..     .+  +.|.+.+..++.|.+.+..+.+.....-+.-|+++|++.++.-
T Consensus       277 ~~~~~~~~~~~~~-----~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (382)
T PRK11128        277 AICGVVRWGLMGS-----TT--ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYS  334 (382)
T ss_pred             HHHHHHHHHHHHh-----hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHH
Confidence            9887777765321     22  3555555666667777766666666555665678888887654

>PRK03699 putative transporter; Provisional

Probab=96.40  E-value=0.00016  Score=73.53  Aligned_cols=128  Identities=12%  Similarity=-0.044  Sum_probs=79.6

Q ss_pred             cccccccchhhhh-hccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           31 IGYLFGSISPVIK-SSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk-~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      ..|.+..|.|.+- +++|+|.++...+.....++..+ .+..|.+.||+++|.++.++.....+++.++.  +.+   + 
T Consensus       220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~~---~-  293 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV--NTD---D-  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH--HcC---C-
Confidence            3456667777654 78899999988765444455444 56789999999999988887776666554432  111   2 


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                       .+.+.+..++.|.+.+..+........+..|++++.+.|.......+++.+-..+.
T Consensus       294 -~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~  349 (394)
T PRK03699        294 -PSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVT  349 (394)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence             11222233344444444444444444455688888888887777777665554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.39  E-value=0.00032  Score=71.47  Aligned_cols=129  Identities=9%  Similarity=0.049  Sum_probs=74.3

Q ss_pred             HhhhhcCcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhh-hccccccccccccchhhhhhhhHHHHHH-
Q 014518            8 FVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLG-VAKDLGDSVGFLAGSLCEVLPIWGALLV-   85 (423)
Q Consensus         8 ~~~~~~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~-~a~~vG~~~g~~~G~l~D~~gP~~vl~i-   85 (423)
                      .++...+-|..++.-.+..+..+.  .....+..+++++|+|.++...+. ....++..++.+.|...||+|+|..+++ 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~   87 (393)
T PRK15011         10 AKSFDLTSTAFLIVAFLTGIAGAL--QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVF   87 (393)
T ss_pred             chhccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence            445545556655554444444343  335566678999999999999974 4445566666665555999999876544 


Q ss_pred             HHhhhhhcceeeeeeeeCCCCCchHHHHhhhe-eeecCCceeeehhhhhhhhhcCCCCCCCee
Q 014518           86 GALQNFIGYGWVWLIVTGRAPVLPLWAMCILI-FVGNNGETYFNTAALVSCVQNFPKSRGPVV  147 (423)
Q Consensus        86 G~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~-~l~g~g~~~~~ta~l~t~~~nFP~~RG~vv  147 (423)
                      +.+...++..++.  +     ..++|.+.+.. ++++.+.  .......+..++++++||...
T Consensus        88 ~~~~~~~~~~~~~--~-----~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  141 (393)
T PRK15011         88 CCLLGVLACTLFA--W-----NRNYFVLLFVGVFLSSFGS--TANPQMFALAREHADKTGREA  141 (393)
T ss_pred             HHHHHHHHHHHHH--H-----hhHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhccchH
Confidence            4444344444322  1     12455544332 2333433  234455566677766666543

>PRK09952 shikimate transporter; Provisional

Probab=96.33  E-value=0.00023  Score=73.86  Aligned_cols=130  Identities=12%  Similarity=0.096  Sum_probs=71.2

Q ss_pred             ccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           32 GYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        32 ~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      .|.+..|.+. +++.+|++.++...++....+...+ .+..|.+.||+|+|.++.++.++..++...++.....  .. +
T Consensus       266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~-~  342 (438)
T PRK09952        266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA--QS-I  342 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--CC-h
Confidence            4544445544 4677899888765555433333322 4568999999999998888876655443332222211  11 2


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccc-cchhhHHHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGF-AGLGGAILTQV  164 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~-~GLSaaI~s~i  164 (423)
                      .+.+.+..++.+.+.+...........+.||. .|++..|+.-.. ..+++++-..+
T Consensus       343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i  399 (438)
T PRK09952        343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFI  399 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHH
Confidence            33333333344444443333333444577985 788888885433 22444443333

>TIGR00895 2A0115 benzoate transport

Probab=96.32  E-value=0.00027  Score=70.41  Aligned_cols=125  Identities=16%  Similarity=0.055  Sum_probs=84.5

Q ss_pred             ccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      ...+....|.|.+.+.+|++..+...+.....++..+ .++.|.+.||+|+|.......+...+++.+.+ .    ..  
T Consensus       264 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~--  336 (398)
T TIGR00895       264 VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS-T----LF--  336 (398)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-H----hh--
Confidence            3445566677888889999999988877766777755 67899999999999555444444444444322 1    11  


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      +.+.+..+.++.|.+.+..+........+.+| ++||++.|+.-+...+++++-
T Consensus       337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  390 (398)
T TIGR00895       337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIG  390 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233344455666666666666777788888 579999998887777666554

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.31  E-value=0.00069  Score=69.22  Aligned_cols=127  Identities=16%  Similarity=0.226  Sum_probs=73.7

Q ss_pred             cccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCC
Q 014518           29 AGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPV  107 (423)
Q Consensus        29 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~  107 (423)
                      .+..|.+..+.|..-+..|++..+...+.....++..+ .++.|.+.||+|+|..+.++.+...++...+... ..  ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~  320 (426)
T PRK12307        244 FGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQ--DN  320 (426)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-cc--cc
Confidence            34444455556665556799988888755555555544 6679999999999999888887765554433211 11  11


Q ss_pred             chHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHH
Q 014518          108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAI  160 (423)
Q Consensus       108 ~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI  160 (423)
                      ......+++.....+...  .........+.||. +||++.|+..+...+++.+
T Consensus       321 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~  372 (426)
T PRK12307        321 YLLLGACLFGLMATNVGV--GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF  372 (426)
T ss_pred             HHHHHHHHHHHHHhcccH--hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH
Confidence            111112222221111111  11122334688985 6999999887777765543

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.31  E-value=0.00018  Score=70.98  Aligned_cols=129  Identities=16%  Similarity=0.159  Sum_probs=76.4

Q ss_pred             cccccchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHH--------HHHHHHhhhhhcceeeeeeee
Q 014518           33 YLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWG--------ALLVGALQNFIGYGWVWLIVT  102 (423)
Q Consensus        33 Y~Fs~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~--------vl~iG~~~~~~Gy~~~~l~~~  102 (423)
                      +.+..|.| -+++.+|+|+.+...+.....++..+ .++.|.+.||++.|.        ...++.+.  .+.......  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--  307 (399)
T TIGR00893       232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV--LSLLMFATN--  307 (399)
T ss_pred             HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH--HHHHHHHhc--
Confidence            34444444 45678999999988877666666655 678999999999984        11222111  111111111  


Q ss_pred             CCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          103 GRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       103 g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                       .. . ..+.......+++.+.+ ..........+.+| ++||++.|+.-....+++.+-..+.....
T Consensus       308 -~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~  371 (399)
T TIGR00893       308 -YV-N-IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIA  371 (399)
T ss_pred             -cc-h-hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc
Confidence             11 1 22222222333333333 44555556667887 57999999999888888877766655544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.25  E-value=0.00088  Score=77.36  Aligned_cols=119  Identities=19%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             cchhhhhhccCcchh-HHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHh
Q 014518           37 SISPVIKSSLNYNQK-QIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC  114 (423)
Q Consensus        37 ~yS~~Lk~~l~~sq~-~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~  114 (423)
                      .+..-+++.+|+++. +...+..+..+|..+ +++.|.+.|+++++.++.+|.+...++..++...       .+.|.++
T Consensus       254 ~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  326 (1146)
T PRK08633        254 NFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------PSLASVL  326 (1146)
T ss_pred             hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------hhHHHHH
Confidence            455567788999999 888877777787755 6789999999999888888887766666554322       1345555


Q ss_pred             hheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHH
Q 014518          115 ILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       115 ~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      +..++.|.+.+...........+++| +.||++.|+......+++.+..
T Consensus       327 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~  375 (1146)
T PRK08633        327 VLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFL  375 (1146)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHH
Confidence            66666677777766655555667787 5699999988777666664433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.13  E-value=0.00065  Score=70.04  Aligned_cols=136  Identities=16%  Similarity=0.159  Sum_probs=84.0

Q ss_pred             cccccchhhhhhccCcchhHHHhhhhccccccc-cccccchhhhhhhhHHHHHHHHhhhhhcceeee-eeeeCCCC--Cc
Q 014518           33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVW-LIVTGRAP--VL  108 (423)
Q Consensus        33 Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~-~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~-l~~~g~i~--~~  108 (423)
                      +....|.+.+.+..+.+.....++.  ..+... ..+.+.++.||+|+|.++++|.....+....+. ......-.  ..
T Consensus       270 ~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNSFLATLI--LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4566789999999999988222211  112222 234556999999999999999988777776664 11111111  01


Q ss_pred             hHHHH-hhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcCC
Q 014518          109 PLWAM-CILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAP  171 (423)
Q Consensus       109 ~~~~l-~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~~  171 (423)
                      +.+.+ +........+.++. .....-...-||. .|.+.+|+.....-+++.+...++....+.
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~-~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~  411 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWG-PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN  411 (451)
T ss_pred             ccccceeeeecccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            22222 22222233444443 3343455889994 799999999999888888877776555533

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=0.00043  Score=70.77  Aligned_cols=152  Identities=18%  Similarity=0.237  Sum_probs=103.1

Q ss_pred             hhhccCcchhHH--Hhhhhcccccc-ccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhhee
Q 014518           42 IKSSLNYNQKQI--ARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIF  118 (423)
Q Consensus        42 Lk~~l~~sq~~l--~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~  118 (423)
                      .+++...+++|.  .++=-.|.+-. .+-.+.|.+.||.|.|..+++|.+..++-..++  ++.     .++|.+.+-=.
T Consensus        95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilF--afg-----~sy~~l~vAR~  167 (464)
T KOG3764|consen   95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILF--AFG-----NSYPMLFVARS  167 (464)
T ss_pred             chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHH--HHc-----chhHHHHHHHH
Confidence            455555554444  33322333333 336789999999999999999998876655442  122     25666666778


Q ss_pred             eecCCceeeehhhhhhhhhcCCCC--CCCeeEeeccccchhhHH---HHHHHHHhcCCCccceeeeeeechhhhhhhhee
Q 014518          119 VGNNGETYFNTAALVSCVQNFPKS--RGPVVGILKGFAGLGGAI---LTQVYTMIHAPDHANLIFMVAVGPAMVVIALMF  193 (423)
Q Consensus       119 l~g~g~~~~~ta~l~t~~~nFP~~--RG~vvgilk~~~GLSaaI---~s~i~~~~f~~~~~~fllfla~~~~~v~~~~~~  193 (423)
                      +-|.|+.+++|+.+--.++.||++  ||.|.|+..++.+|+--+   |.-+-+-+ .+....|+ -|+.+..+-+.+-++
T Consensus       168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFl-VL~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFL-VLAIVLLLDGALQLL  245 (464)
T ss_pred             HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHH-HHHHHHHHHHHHHHh
Confidence            899999999999999999999964  799999999999987432   33332333 34444553 445556666667777


Q ss_pred             eEeccCCcc
Q 014518          194 IIRPVGGHR  202 (423)
Q Consensus       194 fvr~~~~~~  202 (423)
                      .++|.+...
T Consensus       246 vi~p~~~~~  254 (464)
T KOG3764|consen  246 VIEPTEMDP  254 (464)
T ss_pred             eeCccccCc
Confidence            777654443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.00  E-value=0.00063  Score=68.93  Aligned_cols=125  Identities=14%  Similarity=0.154  Sum_probs=80.4

Q ss_pred             hhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhhee
Q 014518           40 PVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIF  118 (423)
Q Consensus        40 ~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~  118 (423)
                      .-+++.+|++..+...+....-+|..+ +++.|++.||++.+....+.  ...++...+.....-  ...+.|.++...+
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  307 (394)
T PRK11652        232 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVI--CCLLAGLLMWIPGWF--GVMNVWTLLVPAA  307 (394)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh--ccccHHHHHHHHH
Confidence            356667999999888876665566655 56788888888743332222  212222221111100  0113445555666


Q ss_pred             eecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          119 VGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       119 l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      +.+.|.+..+........+++|+++|++.++.-+...+++++-+.+..-+
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        308 LFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            67777777777777778899999999999999888888888777665443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=95.95  E-value=0.00021  Score=72.45  Aligned_cols=97  Identities=24%  Similarity=0.298  Sum_probs=66.5

Q ss_pred             ccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC
Q 014518           62 LGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP  140 (423)
Q Consensus        62 vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP  140 (423)
                      ++... .++.|.+.||+++|..+.++.++..+++..++..     +  +.|.+.+..++.|.|.+..+........+++|
T Consensus       260 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~  332 (399)
T PRK05122        260 VAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----P--SPWMALIGAALTGFGFSLVFPALGVEAVKRVP  332 (399)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----c--cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence            34433 4678999999999999888888877777655431     1  23344455566677776655555555678887


Q ss_pred             -CCCCCeeEeeccccchhhHHHHHHH
Q 014518          141 -KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       141 -~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                       ++||++.|+.-....+++++...+.
T Consensus       333 ~~~~g~~~g~~~~~~~~g~~~~~~~~  358 (399)
T PRK05122        333 PQNRGAALGAYSVFLDLSLGITGPLA  358 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             6799999998887777665554443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.91  E-value=0.00021  Score=75.31  Aligned_cols=152  Identities=14%  Similarity=0.085  Sum_probs=91.9

Q ss_pred             chhhhhhccC--cchhHHHh----hhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchH
Q 014518           38 ISPVIKSSLN--YNQKQIAR----LGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL  110 (423)
Q Consensus        38 yS~~Lk~~l~--~sq~~l~~----i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~  110 (423)
                      +-..+.+|++  .|.+++++    +..+--+|+.+ .+..|.+.|++|+|..+++..++..++..++.++..-.    ++
T Consensus        41 ~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~----~~  116 (485)
T KOG0569|consen   41 INETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP----SF  116 (485)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh----hH
Confidence            4466778888  55555555    33344567766 45799999999999999999999888887755544332    34


Q ss_pred             HHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHH-hcC-CCccceeeeeeechhhh
Q 014518          111 WAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTM-IHA-PDHANLIFMVAVGPAMV  187 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~-~f~-~~~~~fllfla~~~~~v  187 (423)
                      ..+-+==++.|..++.......+=-..-=|+ .||.+.-+.--.+.++-.+-.++..- +++ +|...+++....+|.++
T Consensus       117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~  196 (485)
T KOG0569|consen  117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL  196 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH
Confidence            4445555667777777777777767777786 49976554443333333222222221 222 22334555555545544


Q ss_pred             hhhhee
Q 014518          188 VIALMF  193 (423)
Q Consensus       188 ~~~~~~  193 (423)
                      .++..+
T Consensus       197 ~l~~l~  202 (485)
T KOG0569|consen  197 QLALLP  202 (485)
T ss_pred             HHHHHh
Confidence            444433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=95.88  E-value=0.00049  Score=70.26  Aligned_cols=121  Identities=17%  Similarity=0.321  Sum_probs=70.3

Q ss_pred             cchhhhhhccCcchhHHHhhh-hcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeee-eeeCCCCCchHHHH
Q 014518           37 SISPVIKSSLNYNQKQIARLG-VAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWL-IVTGRAPVLPLWAM  113 (423)
Q Consensus        37 ~yS~~Lk~~l~~sq~~l~~i~-~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l-~~~g~i~~~~~~~l  113 (423)
                      ...+-+.+.+|++.++...+. ..+.++..+ +++.|.+.||+|+|..+.++.+...+....++. .+..  +  +.|.+
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~--~--~~~~~  306 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP--K--HLWTM  306 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--C--cHHHH
Confidence            344567788999999998864 334444444 578999999999988877777665444333221 1211  1  22332


Q ss_pred             hhhe----eeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHH
Q 014518          114 CILI----FVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       114 ~~f~----~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      ....    +..+.+.+..++..+.-+.+.||.+   ..++.-+..++++.+.+.+
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  358 (402)
T PRK11902        307 ALAIGIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPT  358 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHH
Confidence            2222    3455555555666666666777743   2344444445666554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=95.88  E-value=0.00018  Score=70.54  Aligned_cols=124  Identities=21%  Similarity=0.294  Sum_probs=83.1

Q ss_pred             cccccchhh-hhhccCcc-hhHHHhhhhcccccc-ccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           33 YLFGSISPV-IKSSLNYN-QKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        33 Y~Fs~yS~~-Lk~~l~~s-q~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      +.+..|.|. +++.+|++ ..+...+-....++. ..+++.|.+.||++++....+......++...+.+....  .. +
T Consensus       223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  299 (352)
T PF07690_consen  223 SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--SS-P  299 (352)
T ss_dssp             HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH--CH-H
T ss_pred             HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--hh-H
Confidence            337777777 49999999 677776444444444 447889999999998666666555555544443222222  11 3


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAI  160 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI  160 (423)
                      .|.++ ..++.|.+.+..+........+.+| ++||++.|+......+++.+
T Consensus       300 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i  350 (352)
T PF07690_consen  300 VWLII-ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII  350 (352)
T ss_dssp             HHHHH-HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44444 3444566777778888888888886 78999999988888777765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=95.82  E-value=0.0012  Score=66.83  Aligned_cols=63  Identities=10%  Similarity=0.033  Sum_probs=47.6

Q ss_pred             cchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeee
Q 014518           37 SISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWL   99 (423)
Q Consensus        37 ~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l   99 (423)
                      .+.| -+++.+|++..+...+.....++..+ .++.|.+.||+|+|.+..++.++..+|...++.
T Consensus       224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  288 (392)
T PRK10473        224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL  288 (392)
T ss_pred             HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 45678899998887755555555544 678999999999999999999888888776554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.76  E-value=0.006  Score=62.81  Aligned_cols=115  Identities=16%  Similarity=0.071  Sum_probs=91.1

Q ss_pred             ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchH
Q 014518           32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL  110 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~  110 (423)
                      =+.-.--=|++.+.+|.|..+.-..-+.-..|..+ +++-..+.||+.+|.+++...+++.+|=.+-++       ++++
T Consensus        29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al-------Ap~f  101 (394)
T COG2814          29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL-------APSF  101 (394)
T ss_pred             HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH-------hccH
Confidence            45555667899999999999999855555566544 889999999999999999988887777665222       3578


Q ss_pred             HHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccc
Q 014518          111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGF  153 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~  153 (423)
                      +.+++-=++.|...+.+..-+...++|-=| ++||.++|++.+.
T Consensus       102 ~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G  145 (394)
T COG2814         102 AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG  145 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH
Confidence            899998899999999777777777777775 6899999887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=95.75  E-value=0.00027  Score=78.49  Aligned_cols=101  Identities=12%  Similarity=0.067  Sum_probs=65.4

Q ss_pred             cccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcC
Q 014518           61 DLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNF  139 (423)
Q Consensus        61 ~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nF  139 (423)
                      .++..+ .++.|++.||+|+|.+++++.++..++.++++..     ++ ..+.+.+. ++.+...+....+...-....|
T Consensus       605 ~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-----~s-~~~ll~~~-~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       605 TLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-----NS-ESAMIALL-CLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-----cc-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence            344444 5689999999999999999888877766654422     12 12222222 2333333333344556678889


Q ss_pred             CC-CCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          140 PK-SRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       140 P~-~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      |. .||++.|+.-+...+++.+-..+...+
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L  707 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSF  707 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            95 699999999998888887766554433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=95.72  E-value=0.00094  Score=70.72  Aligned_cols=131  Identities=21%  Similarity=0.114  Sum_probs=99.0

Q ss_pred             cccccchhhhh-hccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchH
Q 014518           33 YLFGSISPVIK-SSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL  110 (423)
Q Consensus        33 Y~Fs~yS~~Lk-~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~  110 (423)
                      +.-+.||...+ +.++.+....++....-.+|..+ .++.|.+.|++|+|++++++.++..++-.+     ..  -++++
T Consensus        99 ~~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~-----~a--~a~~~  171 (521)
T KOG0255|consen   99 YGSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGIL-----TA--FAPNY  171 (521)
T ss_pred             CCCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHH-----HH--HhCcH
Confidence            33455666665 67777888888888888888877 567999999999999999999887765533     11  13478


Q ss_pred             HHHhhheeeecCCceeeehhhhhhhhhcC-CCCCCCeeEeeccccchhhHHHHHHHHHhcCCC
Q 014518          111 WAMCILIFVGNNGETYFNTAALVSCVQNF-PKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD  172 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta~l~t~~~nF-P~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~  172 (423)
                      +.++++=++.|++.+...+.+....+..+ |++||.+..+ -.+ -.++.++.....+++-++
T Consensus       172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~-~~~~~~~~~~~~a~~~~~  232 (521)
T KOG0255|consen  172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGF-FFVGGLMLPAGAAYITRD  232 (521)
T ss_pred             HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHH-HHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999 6889999988 444 444444444444444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.71  E-value=0.0006  Score=69.61  Aligned_cols=122  Identities=12%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ..+.+..|.|.+-+++|++..+...+.....++..+ .+..|.+.||.++|.+..++.++..+|+.++.. +..   ...
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~  295 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW-LPL---QLP  295 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-ccc---hHH
Confidence            344566677777777899999887755555555544 567999999999999988888887777764321 111   111


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCC--CCCCCeeEeeccccchhhHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP--KSRGPVVGILKGFAGLGGAI  160 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP--~~RG~vvgilk~~~GLSaaI  160 (423)
                      ....+    +.+.|.+..+..+....++.+|  ++||++.|+..+...+++.+
T Consensus       296 ~~~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~  344 (393)
T PRK09705        296 VLWAM----VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGL  344 (393)
T ss_pred             HHHHH----HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            11111    2344555445555556677774  47899998877766555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=95.58  E-value=0.0013  Score=67.22  Aligned_cols=131  Identities=5%  Similarity=-0.087  Sum_probs=80.2

Q ss_pred             cccccc-hhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchH
Q 014518           33 YLFGSI-SPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL  110 (423)
Q Consensus        33 Y~Fs~y-S~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~  110 (423)
                      |.+..| .|-+.+++|++.++...+-....+|..+ +++.|.+.||.+.+.....+.+....+..+...     . . +.
T Consensus       233 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~-----~-~-~~  305 (394)
T PRK10213        233 FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLW-----G-S-DK  305 (394)
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH-----h-h-hH
Confidence            344344 4777788999999988865555566544 678899999965544333333333333333211     1 1 23


Q ss_pred             HHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          111 WAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      |.+-...++.|.|.+..+.....-..++.|++++.+.++..+...++..+=..+.-..++
T Consensus       306 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        306 IVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455566667777777666656778889888888877766666665555555444443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.54  E-value=0.00061  Score=71.71  Aligned_cols=105  Identities=12%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             ccccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-
Q 014518           63 GDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-  141 (423)
Q Consensus        63 G~~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-  141 (423)
                      +....+++|.+.||+|++.++.++.+...++...+++.+.... ..+++....-........+..|.+..+..-+-||+ 
T Consensus       299 ~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~-~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~  377 (462)
T PRK15034        299 GAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTG-SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQI  377 (462)
T ss_pred             HHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhh
Confidence            4444668999999999999999888876666655444443322 22444332222223345556677778888888885 


Q ss_pred             ---------------------CCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          142 ---------------------SRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       142 ---------------------~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                                           +-|.|+|+..+.-|++|.++-.+....
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~  425 (462)
T PRK15034        378 TIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMS  425 (462)
T ss_pred             hhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence                                 457899999999999999887655444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=95.53  E-value=0.00083  Score=68.55  Aligned_cols=120  Identities=11%  Similarity=-0.018  Sum_probs=83.6

Q ss_pred             hhhhccCcchhHHHhhhhccccccccccccchhhhhh-----hhH-HHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHh
Q 014518           41 VIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVL-----PIW-GALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC  114 (423)
Q Consensus        41 ~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~-----gP~-~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~  114 (423)
                      -|++ .|+|-+|+..+....-. -.+.++.|.+.||+     |.| ..+.++.+...+...++...  ..  ..++|.+.
T Consensus        25 ~l~~-~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~--~~--~~~~~~l~   98 (402)
T PRK11902         25 WMTV-EGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC--PP--HAALWPLA   98 (402)
T ss_pred             HHHH-cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc--Cc--cchHHHHH
Confidence            3555 49999999988765554 36689999999999     554 46666666655555543322  11  12467776


Q ss_pred             hheeeecCCceeeehhhhhhhhhcCCCC-CCCeeEeeccccchhhHHHHHHHH
Q 014518          115 ILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       115 ~f~~l~g~g~~~~~ta~l~t~~~nFP~~-RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                      .+.++.+...+..|.+.-.-..+++|++ ||.+.++....++++..+-..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~  151 (402)
T PRK11902         99 GLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL  151 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence            6666666777778888888888999865 999999988877776655555433

>TIGR00889 2A0110 nucleoside transporter

Probab=95.42  E-value=0.0034  Score=64.87  Aligned_cols=62  Identities=8%  Similarity=0.143  Sum_probs=49.9

Q ss_pred             cccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhh-hhHHHHHHHHhhhhhccee
Q 014518           35 FGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGALLVGALQNFIGYGW   96 (423)
Q Consensus        35 Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~-gP~~vl~iG~~~~~~Gy~~   96 (423)
                      ++..++.+++++|+|.+|+..+.....++..+ .++.|.+.||+ ++|.++.++.+...++..+
T Consensus        22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889        22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            45567888999999999999998888888855 88999999998 4588888777776555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=95.41  E-value=0.00095  Score=77.40  Aligned_cols=130  Identities=14%  Similarity=0.005  Sum_probs=85.7

Q ss_pred             hhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeee-------------CC
Q 014518           39 SPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVT-------------GR  104 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~-------------g~  104 (423)
                      ..-+++.+|++..+...+-.+..+|..+ +++.|.+.|+.+.+..+.+|.+...++...+.....             ..
T Consensus       249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (1140)
T PRK06814        249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF  328 (1140)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhh
Confidence            3445778999999999877777788766 778999998877655555555444333322211100             00


Q ss_pred             CCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          105 APVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       105 i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      ....+.|.+++..++.|.+.++.+........+.+| ++||.+.|+.-....++.++-..+...+
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            111356677777777788888877777777778887 5799999998777666665555544444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.30  E-value=0.0013  Score=69.86  Aligned_cols=136  Identities=20%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             hHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeeh
Q 014518           51 KQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNT  129 (423)
Q Consensus        51 ~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~t  129 (423)
                      ++.++++...++|+.+ .+++|.+.|++|+|..++++.+++.+|..+...+.       +++.+.+--++.|.|.+....
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------~~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------SWYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHhccchhhhhh
Confidence            4568899999999977 77899999999999999999999999999866554       466777777788888887765


Q ss_pred             hhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcCCC--ccceeeeeeechhhhhhhheee
Q 014518          130 AALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPD--HANLIFMVAVGPAMVVIALMFI  194 (423)
Q Consensus       130 a~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~--~~~fllfla~~~~~v~~~~~~f  194 (423)
                      .+-+-...-=|. .||..+.+..-... .|..++.+-..+.+.+  ...+.+.++..|.++-.+++++
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~  228 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLF  228 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            544444444475 79999998888887 4445544444444443  3456666666777776666333

>TIGR00788 fbt folate/biopterin transporter

Probab=95.23  E-value=0.0043  Score=65.32  Aligned_cols=155  Identities=15%  Similarity=0.161  Sum_probs=100.3

Q ss_pred             hhcccc-cccccchhhhhhccCcchhHHHhhhhccccccccccccchhhhhhh-----hHHHHHHHHhhh-hhcceeeee
Q 014518           27 SCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLP-----IWGALLVGALQN-FIGYGWVWL   99 (423)
Q Consensus        27 l~~Gt~-Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~g-----P~~vl~iG~~~~-~~Gy~~~~l   99 (423)
                      .+-|.. -....-++-||+++|+|.+|++.+.....+.-.+-+++|.+.|++|     .|+.++++.++. ++++..+. 
T Consensus        36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~-  114 (468)
T TIGR00788        36 FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP-  114 (468)
T ss_pred             HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc-
Confidence            444444 2234567779999999999998887777788888888999999998     788888888776 45554432 


Q ss_pred             eeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccch--hhHHHHHHHHHhcCC--Cccc
Q 014518          100 IVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL--GGAILTQVYTMIHAP--DHAN  175 (423)
Q Consensus       100 ~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GL--SaaI~s~i~~~~f~~--~~~~  175 (423)
                       ..   ++ ......++.++.+++.+..|.++=.-.++..|++++...++....++.  .|.+++.+-.++..+  ..+.
T Consensus       115 -~~---~~-~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~  189 (468)
T TIGR00788       115 -GK---VS-SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRI  189 (468)
T ss_pred             -cc---cc-hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence             11   11 232333466778899999999999899999995554444444444443  355555555554432  2333


Q ss_pred             eeeeeeechhhh
Q 014518          176 LIFMVAVGPAMV  187 (423)
Q Consensus       176 fllfla~~~~~v  187 (423)
                      -++..+.++.+.
T Consensus       190 ~f~~~a~l~ll~  201 (468)
T TIGR00788       190 LFLITAALLLLQ  201 (468)
T ss_pred             HHHHHHHHHHHH
Confidence            333344444444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.23  E-value=0.00088  Score=68.56  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=65.2

Q ss_pred             ccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCC
Q 014518           45 SLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNG  123 (423)
Q Consensus        45 ~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g  123 (423)
                      .++ +..+...+.....++..+ .++.|.+.||+|+|.++.+|.++..+|+..+++.-     . +.+.+.+..++.+.+
T Consensus       252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~g~~  324 (437)
T TIGR00792       252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-----S-NLPLILVLIILAGFG  324 (437)
T ss_pred             ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-----h-hHHHHHHHHHHHHHH
Confidence            344 334444444444566545 56799999999999999999988888887765421     1 234444455555555


Q ss_pred             ceeeehhh--hhhhh---hc--C-CCCCCCeeEeeccccc----hhhHHHHHHH
Q 014518          124 ETYFNTAA--LVSCV---QN--F-PKSRGPVVGILKGFAG----LGGAILTQVY  165 (423)
Q Consensus       124 ~~~~~ta~--l~t~~---~n--F-P~~RG~vvgilk~~~G----LSaaI~s~i~  165 (423)
                      .+..+...  +.+..   ..  . ++.+|.+.|+.-....    +++.+.+.+.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       325 QNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443221  21111   11  1 3457888876654444    4444444443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=95.03  E-value=0.0029  Score=63.95  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=59.4

Q ss_pred             ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCC
Q 014518           67 GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGP  145 (423)
Q Consensus        67 g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~  145 (423)
                      .+..|.+.||+|+|.++.++.+...++..++...     +  +.|.+.+..++.|.+.+....+......+..| ++||.
T Consensus       275 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  347 (408)
T PRK09874        275 APRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----Q--TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGR  347 (408)
T ss_pred             HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----c--cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccccee
Confidence            5568999999999999998888766665442211     1  23444455555666666655554444455666 57899


Q ss_pred             eeEeeccccchhhHHHHHH
Q 014518          146 VVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       146 vvgilk~~~GLSaaI~s~i  164 (423)
                      +.|+.-....++.++-..+
T Consensus       348 ~~~~~~~~~~~g~~~gp~~  366 (408)
T PRK09874        348 IFSYNQSFRDIGNVTGPLM  366 (408)
T ss_pred             eehHHHHHHHHHHHhhHHH
Confidence            9998777766665554333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.95  E-value=0.002  Score=67.01  Aligned_cols=135  Identities=17%  Similarity=0.059  Sum_probs=74.2

Q ss_pred             ccccccchhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhH-----H---HHHHHHhhhhhcceeeeeee
Q 014518           32 GYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIW-----G---ALLVGALQNFIGYGWVWLIV  101 (423)
Q Consensus        32 ~Y~Fs~yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~-----~---vl~iG~~~~~~Gy~~~~l~~  101 (423)
                      .|.+..|-|.. ++.+|+|..+...+.....++..+ +++.|.+.|+.+.|     .   .+..+......+..++.+.+
T Consensus       277 ~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (465)
T TIGR00894       277 YTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY  356 (465)
T ss_pred             HHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666644 678999999998877666677655 78899999987643     1   11111111111111111111


Q ss_pred             eCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          102 TGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       102 ~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      ..  .. .+ ...++.++++.+.+...........+..|+.+|.+.|+.-...-+++.+...+.....+
T Consensus       357 ~~--~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       357 LS--AA-FY-LTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             cC--Cc-hH-HHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            11  11 22 22222233333333333333344556678889999888887777777777666544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=94.92  E-value=0.0045  Score=64.49  Aligned_cols=155  Identities=17%  Similarity=0.088  Sum_probs=110.8

Q ss_pred             chhhhhhccCcchhHHHhhhhccccccc-cccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhh
Q 014518           38 ISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCIL  116 (423)
Q Consensus        38 yS~~Lk~~l~~sq~~l~~i~~a~~vG~~-~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f  116 (423)
                      =-+++++.+|++-++.-++++.-+++-- .+++.|++.||+-++.++.+|.....+.-+.     .+.+  .-+|++.++
T Consensus        55 v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~-----~~fs--~~Fwq~~l~  127 (493)
T KOG1330|consen   55 VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA-----SGFS--NHFWQVLLC  127 (493)
T ss_pred             hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH-----HHHH--HHHHHHHHH
Confidence            4467889999999999999998888874 4889999999999999988888774433322     2323  259999999


Q ss_pred             eeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhcCCCcc---ceeeeeeechhhhhhhhe
Q 014518          117 IFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHA---NLIFMVAVGPAMVVIALM  192 (423)
Q Consensus       117 ~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~~~---~fllfla~~~~~v~~~~~  192 (423)
                      =.+.|.|-....+.+-.-...+|| ++||++.|+.-=. +=.|.++..++.....+.+.   .=+..-+++..+++++..
T Consensus       128 R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~-ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~  206 (493)
T KOG1330|consen  128 RGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFA-IPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVF  206 (493)
T ss_pred             HHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhh-cccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHH
Confidence            999999999999999999999999 4799776653211 01112222222222222221   224556677778888888


Q ss_pred             eeEeccCC
Q 014518          193 FIIRPVGG  200 (423)
Q Consensus       193 ~fvr~~~~  200 (423)
                      .|+|-|++
T Consensus       207 ~f~~eP~r  214 (493)
T KOG1330|consen  207 LFVREPER  214 (493)
T ss_pred             hhccCccc
Confidence            89998876

>PRK03633 putative MFS family transporter protein; Provisional

Probab=94.84  E-value=0.0024  Score=64.57  Aligned_cols=128  Identities=12%  Similarity=0.000  Sum_probs=74.9

Q ss_pred             HHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeee
Q 014518           23 MWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIV  101 (423)
Q Consensus        23 ~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~  101 (423)
                      +...++.+..|.|   .|..-++.|++.++...+.....++..+ .++.|.+.||+|+|.++.++.+...+|...+.   
T Consensus       210 ~~~~~~~~~~~~~---lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---  283 (381)
T PRK03633        210 IISGIVLGSLYGL---MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---  283 (381)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---
Confidence            3333444555544   4444455799988887754444455544 66789999999999999888888777765532   


Q ss_pred             eCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHH
Q 014518          102 TGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus       102 ~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~  163 (423)
                       . . ...++.+.++    +.+.......+.....++.|+ +++.+.+.....+++++++-..
T Consensus       284 -~-~-~~~~~~~~l~----g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~  339 (381)
T PRK03633        284 -S-Q-AAMAPALFIL----GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPS  339 (381)
T ss_pred             -h-h-HHHHHHHHHH----HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1 1 1112222221    222222344455556788875 5676666655556665554443

>PRK12382 putative transporter; Provisional

Probab=94.71  E-value=0.00086  Score=67.89  Aligned_cols=116  Identities=18%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             hccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecC
Q 014518           44 SSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNN  122 (423)
Q Consensus        44 ~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~  122 (423)
                      ++.++++.....  ....++..+ .++.|.+.||+|+|..+.++.+...+++.++...     +  +.+.+.+..++.|.
T Consensus       244 ~~~~~~~~~~~~--~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~l~g~  314 (392)
T PRK12382        244 ASKGWAMAGFTL--TAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----P--TAWVALAGAALTGA  314 (392)
T ss_pred             HhcCCchhHHHH--HHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----c--cHHHHHHHHHHHHH
Confidence            335666544332  222333333 5678999999999999888888888887764431     1  23333444455566


Q ss_pred             CceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518          123 GETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus       123 g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      +.+..+.+......+.+| ++||++.|+.-....+++++-..+...+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l  361 (392)
T PRK12382        315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGML  361 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555555555677786 7899999999888887776655444443

>PRK09848 glucuronide transporter; Provisional

Probab=94.63  E-value=0.0014  Score=68.06  Aligned_cols=115  Identities=17%  Similarity=0.119  Sum_probs=68.6

Q ss_pred             hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeee
Q 014518           42 IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG  120 (423)
Q Consensus        42 Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~  120 (423)
                      +++.+|.+......+.....++..+ .++.|.+.||+|+|.++.+|.++..+|+.+++..     +..++|.+.+..++.
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~  329 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-----SVWSLPVALVALAIA  329 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----CchhHHHHHHHHHHH
Confidence            4566787665444444433444443 5679999999999999999999988888776532     112455555555666


Q ss_pred             cCCceeeehhhhhhhhhcCCC--------CCCCeeEeeccccchhhHHH
Q 014518          121 NNGETYFNTAALVSCVQNFPK--------SRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       121 g~g~~~~~ta~l~t~~~nFP~--------~RG~vvgilk~~~GLSaaI~  161 (423)
                      +.|.+.............=|.        ++|...|+..-..-++.++-
T Consensus       330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig  378 (448)
T PRK09848        330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG  378 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence            777666554433333222231        24666665444443444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=94.62  E-value=0.011  Score=58.28  Aligned_cols=127  Identities=20%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             ccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhh--hHHHH-HHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           34 LFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLP--IWGAL-LVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        34 ~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~g--P~~vl-~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      .+..|.|. +++.+|++..+...+.....++..+ .++.|.+.||..  ++..+ .+......++..+++...     ..
T Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  308 (379)
T TIGR00881       234 GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP-----AA  308 (379)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc-----ch
Confidence            33334444 5678999999988866666666655 667999999753  22222 222222222222222111     11


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      +.+.+.+..++.|...............+.+| ++||++.|+.-....+++.+-..+.
T Consensus       309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~  366 (379)
T TIGR00881       309 NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPL  366 (379)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhH
Confidence            22222222223332222222222234567787 5799999998877777766554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=94.51  E-value=0.011  Score=64.25  Aligned_cols=222  Identities=17%  Similarity=0.132  Sum_probs=113.1

Q ss_pred             CcchhHHHHHHHHhhcc--cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           14 NRWLVFVAAMWIQSCAG--IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~G--t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      +|.+..++++....++.  ..+..+.--+++-..+|=+ .+...++++-.++..+ ..+.|.+.|.+|+|.++++|.++.
T Consensus        40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~  118 (599)
T PF06609_consen   40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG  118 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence            45555555554444433  2222222224455556554 4555677777788755 567999999999999999999999


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      .+|.....   +    ..++-.++.=+.+.|.|.+.-....+. ...--| +.|+...++....+-....+=..+...+.
T Consensus       119 vvG~Iv~a---t----A~~~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  119 VVGSIVCA---T----AQNMNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             HhHHHHhh---c----CCcHHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence            99987622   1    124445666666666665544433333 233346 46765444332211111101111222333


Q ss_pred             CCCcccee-eeeeechhhhhhhheeeEeccCCccccccC-----CCCcee-ehhHH-HHHHHHHHHHHHHHHhh-hccCc
Q 014518          170 APDHANLI-FMVAVGPAMVVIALMFIIRPVGGHRQVRPS-----DSSSFT-FIYSV-CLLLAAYLMGVMLVEDL-VDLNH  240 (423)
Q Consensus       170 ~~~~~~fl-lfla~~~~~v~~~~~~fvr~~~~~~~~~~~-----~~~~f~-~~~~~-~~~l~~yl~~~~~~~~~-~~~~~  240 (423)
                      ......+. ++..+...+..++.++|-+||++.+.+.++     .-+++- .+..+ ...++.||+..+.-... .+.+.
T Consensus       191 ~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~S  270 (599)
T PF06609_consen  191 AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKS  270 (599)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence            22233332 222333444444556666776654321111     112222 23322 33577788887666653 45544


Q ss_pred             hhHH
Q 014518          241 TVII  244 (423)
Q Consensus       241 ~~~~  244 (423)
                      +..+
T Consensus       271 a~VI  274 (599)
T PF06609_consen  271 AHVI  274 (599)
T ss_pred             ccch
Confidence            4333

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.46  E-value=0.0036  Score=63.58  Aligned_cols=123  Identities=11%  Similarity=0.062  Sum_probs=66.1

Q ss_pred             cccchhhhhhccCcchhHHHhhhhccccccc-cccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHH
Q 014518           35 FGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAM  113 (423)
Q Consensus        35 Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~-~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l  113 (423)
                      ++.|-++.-+..+.+.++...+.....+... ..++.|.+.||+|+|..+.+|.++..+++.++..     .+  +.|.+
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~-----~~--~~~~~  310 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF-----AT--TALEV  310 (396)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh-----cC--ChHHH
Confidence            3444433322235555555554444444443 3577899999999999999999887777765332     11  23334


Q ss_pred             hhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEe-eccccchhhHHHHHH
Q 014518          114 CILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGI-LKGFAGLGGAILTQV  164 (423)
Q Consensus       114 ~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgi-lk~~~GLSaaI~s~i  164 (423)
                      .+..++.|.+.......+..-+.+.+|+ .|+++.+. .-...++++.+...+
T Consensus       311 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l  363 (396)
T TIGR00882       311 VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL  363 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence            4444555555444433333334445553 23333333 123345555555433

>TIGR00788 fbt folate/biopterin transporter

Probab=94.31  E-value=0.0071  Score=63.68  Aligned_cols=120  Identities=13%  Similarity=-0.017  Sum_probs=87.7

Q ss_pred             hccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCC---CchHHHHhhheee
Q 014518           44 SSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP---VLPLWAMCILIFV  119 (423)
Q Consensus        44 ~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~---~~~~~~l~~f~~l  119 (423)
                      +.+|++..++.++.....++..+ ....+.+.++++.|.++.++.++..+++......++..-.   .+..|.+.....+
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            35899999999866555566655 5568888899999999999999999888775444322110   0122233334455


Q ss_pred             ecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHH
Q 014518          120 GNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus       120 ~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~  163 (423)
                      .+.+.+...++.++..++.=| +++|++-|+..+..+|+..+-+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~  405 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGF  405 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence            566777778888888888887 56899999999999999777765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=94.04  E-value=0.014  Score=59.71  Aligned_cols=117  Identities=15%  Similarity=0.075  Sum_probs=73.4

Q ss_pred             hhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheee
Q 014518           41 VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFV  119 (423)
Q Consensus        41 ~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l  119 (423)
                      -+++.+|+|..+...+-....+|..+ ++..|.+.|+.+++.++.+|.++. .++..  +.+   .  ++.|...+..++
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~--~~~---~--~~~~~~~~~~~~  302 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMG-LVVLL--MAL---Q--HSLLPAYPLLIL  302 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH-HHHHH--HHH---H--hHHHHHHHHHHH
Confidence            35667899999998888878888866 678899999999988877775432 22211  111   1  234445555556


Q ss_pred             ecCCceeeehhhhhhhhhcCCCC--CCCeeEeeccccchhhHHHHHHH
Q 014518          120 GNNGETYFNTAALVSCVQNFPKS--RGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       120 ~g~g~~~~~ta~l~t~~~nFP~~--RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      .|.+.++++........++-|++  ||.+.++.....-++..+-..++
T Consensus       303 ~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~  350 (393)
T PRK11195        303 IGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLY  350 (393)
T ss_pred             HHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence            67777777754444444444553  57777776655545544444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.03  E-value=0.0023  Score=65.53  Aligned_cols=123  Identities=17%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             chhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhh----hh-HHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           38 ISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL----PI-WGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        38 yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~----gP-~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      ..+-+.+.+|++..+..++-.+.-+...+ .++.|.+.||.    |+ |+.+++|++...++..+++..-.... ...++
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~-~~~~~  100 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSA-TGKLV  100 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCc-chHHH
Confidence            55667889999999999987777777655 88999999985    44 45677888777777776654321111 11233


Q ss_pred             HHhhheeeecCCceeeehh--hhhhhhhcCCCCCCCeeEeeccccchhhHHH
Q 014518          112 AMCILIFVGNNGETYFNTA--ALVSCVQNFPKSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta--~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .+.+...+.+.+.+..++.  ++...+.+=|++|+.+.++--.+..+++.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~  152 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLV  152 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444555544443  3333333235789988777555444444433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=93.91  E-value=0.0086  Score=61.95  Aligned_cols=150  Identities=19%  Similarity=0.166  Sum_probs=98.2

Q ss_pred             cCcch-hHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhccccccc-cccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWL-VFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~-~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~-~g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      .+|.+ .++++.+++.+.+..|.|.  +.-+++.-+++......+-..+.+... +-+..+++..|+|++.++++|.+..
T Consensus       206 ~~~~~~Fll~~~l~~~~~~~~~~f~--~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  206 NPRFLVFLLAAFLIGISHAAYYTFF--SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44454 4466667778888888885  555777666766665554333445553 3668999999999999999999987


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHh-hh--eeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeecc-ccchhhHHHHHHH
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMC-IL--IFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKG-FAGLGGAILTQVY  165 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~-~f--~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~-~~GLSaaI~s~i~  165 (423)
                      .+=+.++...-+    + ..+..+ ..  ..+-|..=+.+..+++.=.-++.|+ .|+++.|+.-+ ..|+|+++-+.+.
T Consensus       284 ~vR~~l~a~~~~----~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig  358 (400)
T PF03825_consen  284 AVRWLLYAYFSD----P-WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG  358 (400)
T ss_pred             HHHHHHHHHhcC----C-cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            766655332111    1 111111 11  1233444446677888888899985 58999999876 4799888866655


Q ss_pred             HHhc
Q 014518          166 TMIH  169 (423)
Q Consensus       166 ~~~f  169 (423)
                      -..+
T Consensus       359 G~l~  362 (400)
T PF03825_consen  359 GWLY  362 (400)
T ss_pred             HHHH
Confidence            4444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=93.86  E-value=0.032  Score=58.40  Aligned_cols=122  Identities=18%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             CcchhHHHhhhhccccccccc-cccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCce
Q 014518           47 NYNQKQIARLGVAKDLGDSVG-FLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGET  125 (423)
Q Consensus        47 ~~sq~~l~~i~~a~~vG~~~g-~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~  125 (423)
                      +|...-..++.-+.++|..+| ++.|++-|++|+|.+...-.+..-+.-....+......+..-++.+|+|=++.|+|.+
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG  159 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG  159 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence            355555666777778998884 6799999999998876666655555444333333333322237788999999999988


Q ss_pred             eeehhhhhhhhhcCC--CCCCCeeEeeccccc---hhhHHHHHHHHHhc
Q 014518          126 YFNTAALVSCVQNFP--KSRGPVVGILKGFAG---LGGAILTQVYTMIH  169 (423)
Q Consensus       126 ~~~ta~l~t~~~nFP--~~RG~vvgilk~~~G---LSaaI~s~i~~~~f  169 (423)
                      . |--.=.|.++-+-  ..||+-++.+-++.|   |.|+|++.|-.+.|
T Consensus       160 G-DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~f  207 (538)
T KOG0252|consen  160 G-DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIF  207 (538)
T ss_pred             C-CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHH
Confidence            5 3334455566664  679999999999988   45777777666655

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=93.81  E-value=0.0066  Score=62.54  Aligned_cols=135  Identities=15%  Similarity=0.009  Sum_probs=69.1

Q ss_pred             hhhcCcchhHHHHHHHHhhcccccccccchh-hhhhccCcchhHHHhhhhcccccccc-ccccchhh-hhhhhHH-----
Q 014518           10 SFFNNRWLVFVAAMWIQSCAGIGYLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLC-EVLPIWG-----   81 (423)
Q Consensus        10 ~~~~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~-~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~-D~~gP~~-----   81 (423)
                      +..++|.+...+.. ..++....+.|..+.| -+++.+|++..+...+......+..+ +...+.+. |+.++|.     
T Consensus       213 ~ll~~~~~~~~~l~-~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  291 (413)
T PRK15403        213 NVFRNRLFLTGAAT-LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAV  291 (413)
T ss_pred             HHHcCHHHHHHHHH-HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence            33455544332222 2334445567777776 45677899999988765433344444 34555544 5555554     


Q ss_pred             -HHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeecccc
Q 014518           82 -ALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFA  154 (423)
Q Consensus        82 -vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~  154 (423)
                       +..+|.++..++..+        .+. +++...+..++.+.|.+.........+....+..+|++.|+.-...
T Consensus       292 ~~~~ig~~l~~~~~~~--------~~~-~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~  356 (413)
T PRK15403        292 PIQLVGLALLIVGNLL--------WPH-VWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVI  356 (413)
T ss_pred             HHHHHHHHHHHHHHHH--------ccc-cHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence             334455544444321        111 2222223334445555555444443344444555888888764443

>PRK10133 L-fucose transporter; Provisional

Probab=93.59  E-value=0.017  Score=60.07  Aligned_cols=111  Identities=12%  Similarity=-0.006  Sum_probs=74.2

Q ss_pred             hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeec
Q 014518           43 KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGN  121 (423)
Q Consensus        43 k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g  121 (423)
                      ++.+|++..+....-....++..+ .+++|.+.||+|+|.++.++.++...+.+...+  ...    .. .+ ....+.|
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~--~~~----~~-~~-~~~~l~g  358 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF--AGG----HV-GL-IALTLCS  358 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH--cCC----hH-HH-HHHHHHH
Confidence            567899999998865555566655 578999999999999888887765554433221  111    11 11 1223356


Q ss_pred             CCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHH
Q 014518          122 NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       122 ~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      .|.+..+-......++.+|++.|++.+++.. ..+++++..
T Consensus       359 lg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~  398 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVT  398 (438)
T ss_pred             HHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHH
Confidence            7777777778888999999988888887753 224444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.55  E-value=0.0082  Score=62.67  Aligned_cols=153  Identities=20%  Similarity=0.315  Sum_probs=101.0

Q ss_pred             hhhhhhccCcchhHHHhhhhccccccccccccchhhhhhh-----hHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHH
Q 014518           39 SPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLP-----IWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAM  113 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~g-----P~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l  113 (423)
                      .+-+|+++|+|.+|++.+....++.-.+-++.|++.|.+|     .|+=+++|+++..++...+.+. .+..+  +....
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~-~~~~~--s~~~~   89 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL-PASES--SAAIA   89 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc-ccccc--hhhhH
Confidence            4559999999999999999988888899999999999997     6888888998886555543332 22221  34455


Q ss_pred             hhheeeecCCceeeehh---hhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhc--CCCccceeeeeeechhhhh
Q 014518          114 CILIFVGNNGETYFNTA---ALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIH--APDHANLIFMVAVGPAMVV  188 (423)
Q Consensus       114 ~~f~~l~g~g~~~~~ta---~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f--~~~~~~fllfla~~~~~v~  188 (423)
                      .++.+++..|..+.|.+   -++-.++.-|..||..+...-...-++ .++++...++.  ..+++.-+...+.+|.+..
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G-~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVG-SLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHH-HHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            56667788888888875   477888999988877554433333333 33344334443  2234444444455566555


Q ss_pred             hhheeeE
Q 014518          189 IALMFII  195 (423)
Q Consensus       189 ~~~~~fv  195 (423)
                      +...+..
T Consensus       169 ~~~~~~~  175 (433)
T PF03092_consen  169 IVALFLL  175 (433)
T ss_pred             HHHHHhh
Confidence            4444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00898 2A0119 cation transport protein

Probab=93.54  E-value=0.005  Score=64.57  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCC
Q 014518           67 GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGP  145 (423)
Q Consensus        67 g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~  145 (423)
                      .+..|++.||+|+|.++.++.+...++.+++...-     ....+......++++.+.+..+.....-..+.||. .||+
T Consensus       372 ~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  446 (505)
T TIGR00898       372 KLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNL  446 (505)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhh
Confidence            45688999999999999998888766665544321     11112333333444455554445555566788994 6999


Q ss_pred             eeEeeccccchhhHHHHHHHH
Q 014518          146 VVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       146 vvgilk~~~GLSaaI~s~i~~  166 (423)
                      +.|+.-....+++.+-..+..
T Consensus       447 ~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       447 GVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             hHhHHHHHHHHHHHHHhHHHH
Confidence            999988888887766555544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=93.49  E-value=0.0096  Score=62.19  Aligned_cols=119  Identities=9%  Similarity=-0.066  Sum_probs=71.5

Q ss_pred             chhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhh--hhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHh
Q 014518           38 ISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV--LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC  114 (423)
Q Consensus        38 yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~--~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~  114 (423)
                      |-+...+.+|+++.+...+.....++..+ .++.|++.|+  .+++....++..+...|...+.....     .+.|.+.
T Consensus       263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~~~~~~~  337 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----GDYTGLV  337 (455)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHH
Confidence            33444345799999988865554555544 5678999997  44555444444343333322222221     1344555


Q ss_pred             hheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518          115 ILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       115 ~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      ++.++.|.+.+...........+.+| ++||++.|+......+++++-
T Consensus       338 i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig  385 (455)
T TIGR00892       338 IYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIG  385 (455)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcc
Confidence            55666666666665555555566776 468999998888877766554

>PRK11663 regulatory protein UhpC; Provisional

Probab=93.25  E-value=0.0093  Score=61.67  Aligned_cols=123  Identities=12%  Similarity=0.028  Sum_probs=63.3

Q ss_pred             ccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhh--hh-HH---HHHHHHhhhhhcceeeeeeeeCCC
Q 014518           34 LFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL--PI-WG---ALLVGALQNFIGYGWVWLIVTGRA  105 (423)
Q Consensus        34 ~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~--gP-~~---vl~iG~~~~~~Gy~~~~l~~~g~i  105 (423)
                      .+..|.|. +++.+|+|..+.+.+.....++..+ .++.|.+.||+  +. +.   +..++.+...++...   ...   
T Consensus       261 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~---  334 (434)
T PRK11663        261 AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL---MPF---  334 (434)
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH---ccc---
Confidence            34445444 4577899999988866666666655 67899999998  22 22   222232222222211   111   


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      .+ ..++.+++..+ |.+.............+.|| ++||+++|+.-.+.-+++++-..+
T Consensus       335 ~~-~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~  392 (434)
T PRK11663        335 AS-YVMQAACFFTI-GFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYP  392 (434)
T ss_pred             cc-HHHHHHHHHHH-HHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhccc
Confidence            11 22222222222 22111111111223457786 689999999876665655554333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=93.17  E-value=0.0057  Score=61.93  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             hhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceee
Q 014518           39 SPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWV   97 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~   97 (423)
                      .+.+++.+|++..+...+.....++..+ .++.|++.||+|++..+.++.+...+|+.++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            4567778999999998876666666655 7789999999999999998888877777553

>TIGR00896 CynX cyanate transporter

Probab=92.92  E-value=0.014  Score=58.23  Aligned_cols=124  Identities=18%  Similarity=0.133  Sum_probs=75.1

Q ss_pred             hcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhh-hhHHHHHHHHhhhhhcceeeeeeeeCCC
Q 014518           28 CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGALLVGALQNFIGYGWVWLIVTGRA  105 (423)
Q Consensus        28 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~-gP~~vl~iG~~~~~~Gy~~~~l~~~g~i  105 (423)
                      .....|.+..|-|..-+.+|+|.++...+.....++..+ .++.|++.||+ +.|.++.++.++..+|..++...-.   
T Consensus       209 ~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---  285 (355)
T TIGR00896       209 QSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM---  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh---
Confidence            344455555666666556799999988877777777766 77899999999 4566777777777777654432211   


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhh-hcCC-CCCCCeeEeeccccchhhH
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCV-QNFP-KSRGPVVGILKGFAGLGGA  159 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~-~nFP-~~RG~vvgilk~~~GLSaa  159 (423)
                        ...+.   +..+.|.|.+........... +..| +++|.+.|+.-+...++++
T Consensus       286 --~~~~~---~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  336 (355)
T TIGR00896       286 --HGLWA---WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAA  336 (355)
T ss_pred             --hHHHH---HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence              12222   223445666555444333333 3343 4568888876654444433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=92.41  E-value=0.027  Score=58.30  Aligned_cols=125  Identities=16%  Similarity=0.063  Sum_probs=62.6

Q ss_pred             ccccccchhhh-hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhh---hhhcceeeeeeeeCCCC
Q 014518           32 GYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ---NFIGYGWVWLIVTGRAP  106 (423)
Q Consensus        32 ~Y~Fs~yS~~L-k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~---~~~Gy~~~~l~~~g~i~  106 (423)
                      .|.+..|.|.. ++.+|++..+..++.....++..+ .+..|.+.||++++....++...   ..++..++++.   ...
T Consensus       267 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  343 (438)
T TIGR00712       267 RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN---PAG  343 (438)
T ss_pred             HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc---CCC
Confidence            45565666554 456799988877765555555443 77899999999643211222221   11222222211   111


Q ss_pred             CchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518          107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       107 ~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                        +.|..+...+..|.+.............+.|| ++||++.|+.....-+++.+.
T Consensus       344 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~  397 (438)
T TIGR00712       344 --NPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA  397 (438)
T ss_pred             --chHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhh
Confidence              12222222222222211111111123457888 579999999876544444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01272 gluP glucose/galactose transporter

Probab=92.38  E-value=0.017  Score=57.38  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             ccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCC
Q 014518           45 SLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNG  123 (423)
Q Consensus        45 ~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g  123 (423)
                      .+|++.++....-...-.+..+ .+..+.+.||+|++.++.++.+...++..+.+.. .+   ....+.+.    +.|.+
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-~~---~~~~~~~~----l~g~~  243 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-HG---YVAMWFVL----ALGLF  243 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CC---HHHHHHHH----HHHHH
Confidence            3799988888764444444444 5679999999999999999988888877554432 11   11233222    45677


Q ss_pred             ceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHH
Q 014518          124 ETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus       124 ~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~  163 (423)
                      .+..+-.......+.+|++.|.+.+++ ..-.+++++.-.
T Consensus       244 ~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~  282 (310)
T TIGR01272       244 NSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPL  282 (310)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHH
Confidence            777777788888999999888888775 444466666533

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=91.65  E-value=0.0075  Score=63.27  Aligned_cols=76  Identities=16%  Similarity=0.041  Sum_probs=43.0

Q ss_pred             hHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeee
Q 014518           51 KQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFN  128 (423)
Q Consensus        51 ~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~  128 (423)
                      +....+.....++..+ .++.|.+.||+|+|.++.++.++..+|...++..  +..+..+.|.+.+..++.+.+.+..+
T Consensus       266 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~g~~~~~~~  342 (473)
T PRK10429        266 DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLM--GLAAPHNALLIVIAGILLNIGTALFW  342 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHH
Confidence            3333444333344444 4668999999999999998888766666554322  11111234444445555555555443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=91.57  E-value=0.011  Score=64.05  Aligned_cols=152  Identities=15%  Similarity=0.174  Sum_probs=99.9

Q ss_pred             chhHHHHHHHHhhccccc-cc-ccchhhhhhccCcchh---HHHhhhhcccccccc-ccccchhhhhhh-hHHHHHHHHh
Q 014518           16 WLVFVAAMWIQSCAGIGY-LF-GSISPVIKSSLNYNQK---QIARLGVAKDLGDSV-GFLAGSLCEVLP-IWGALLVGAL   88 (423)
Q Consensus        16 w~~l~a~~~i~l~~Gt~Y-~F-s~yS~~Lk~~l~~sq~---~l~~i~~a~~vG~~~-g~~~G~l~D~~g-P~~vl~iG~~   88 (423)
                      .+.+.+...+....|.+| .. .+|..+...-|+-|..   +...++.-.++|..+ +++.|.+.-+.+ -|+.+++|++
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~  388 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV  388 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence            345666666777777665 22 2566666666655543   233344444555555 355677776554 4677788887


Q ss_pred             hhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHH
Q 014518           89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTM  167 (423)
Q Consensus        89 ~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~  167 (423)
                      +...+.+.+...-.   +....  ...|.+++|.|.++.-.-+++.+.-.-| ++-|+++|++.+.--++|+|.+++|.+
T Consensus       389 ~~ta~~Gama~~~~---~n~~~--~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  389 LMTAFCGAMAAVRP---DNKNA--AIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHccC---CCcch--HHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            77666555443322   22222  2467778899999887666665555556 568999999999999999999999999


Q ss_pred             hcCCC
Q 014518          168 IHAPD  172 (423)
Q Consensus       168 ~f~~~  172 (423)
                      .|.+.
T Consensus       464 I~~n~  468 (599)
T PF06609_consen  464 IFTNK  468 (599)
T ss_pred             HHHhh
Confidence            98553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=91.53  E-value=0.037  Score=57.25  Aligned_cols=119  Identities=18%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             hhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeec
Q 014518           43 KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGN  121 (423)
Q Consensus        43 k~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g  121 (423)
                      ++.||++|+|+-.++.+.++.+.. ++++|++-||+|+|.++.+|.+...+-...  +.+.+ . ...+|.   +..+.|
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~--~~~~~-~-~~~f~i---~gll~g  352 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY--LIFLE-G-ELDFWI---LGLLVG  352 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH--HHHcc-c-cHHHHH---HHHHHH
Confidence            568999999999999999999966 889999999999999999998875433222  11112 1 224554   444555


Q ss_pred             CCceeeehhhhhhhhhcCCCCC-CCeeEeeccccchhhHHHHHHHHHhc
Q 014518          122 NGETYFNTAALVSCVQNFPKSR-GPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       122 ~g~~~~~ta~l~t~~~nFP~~R-G~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      ...+-....+=.--.|+.|..| |.--|+ -+.+|=.+++++-+--+.+
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFgl-yaltgra~S~~gp~lv~v~  400 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGL-YALTGRAASFLGPFLVAVI  400 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeeh-hhhhhhHHHHHHHHHHHHH
Confidence            6666666677777889998665 444333 2333444555555444444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=91.19  E-value=0.038  Score=58.70  Aligned_cols=154  Identities=20%  Similarity=0.192  Sum_probs=95.0

Q ss_pred             hhcCcchhHHHHHHHHhhcccccccccchhhhhhccCcchh-HHHh--hhhccccccccccccchhhhhhhhHHHHHHHH
Q 014518           11 FFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK-QIAR--LGVAKDLGDSVGFLAGSLCEVLPIWGALLVGA   87 (423)
Q Consensus        11 ~~~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~-~l~~--i~~a~~vG~~~g~~~G~l~D~~gP~~vl~iG~   87 (423)
                      ...+|.+.-+.-...|-++|.++. --|++++-+.-+.+-. ...+  ++....++   .++++++.||.|+|+.++.|+
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~-~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~---t~~~~~lvd~~gRr~lll~s~  366 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYV-FYYSTTIFKSAGLKSDTFLASIILGVVNFLG---TLVATYLVDRFGRRKLLLFGA  366 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceE-EeehHHHHHhcCCCCchHHHHHHHHHHHHHH---HHHHHHHHHHhccHHHHHHhH
Confidence            345555544444444555776554 4688888887777744 2222  33222222   345589999999999999999


Q ss_pred             hhhhhcceeeeeeeeCCCC---------CchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchh
Q 014518           88 LQNFIGYGWVWLIVTGRAP---------VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLG  157 (423)
Q Consensus        88 ~~~~~Gy~~~~l~~~g~i~---------~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLS  157 (423)
                      +...++-.++...+.....         -.++..+|+|..  .++.++.-..- +-...-|| +-|+.+.++-.+...+.
T Consensus       367 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~f~~g~g~v~w-~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  367 AGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIF--SFAIGWGPVPW-VIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHH--HHhcccccchh-hhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            9888777766555433221         112333344333  33333322111 34556789 56999999999999999


Q ss_pred             hHHHHHHHHHhcCC
Q 014518          158 GAILTQVYTMIHAP  171 (423)
Q Consensus       158 aaI~s~i~~~~f~~  171 (423)
                      +.+.+..+...-..
T Consensus       444 ~~~v~~~~~~~~~~  457 (513)
T KOG0254|consen  444 NFLISFFFPFITEA  457 (513)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99998887666433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=90.14  E-value=0.019  Score=59.13  Aligned_cols=131  Identities=19%  Similarity=0.238  Sum_probs=79.1

Q ss_pred             cccchhh-hhhccCcchhHHHhhhhccc-cccccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch---
Q 014518           35 FGSISPV-IKSSLNYNQKQIARLGVAKD-LGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP---  109 (423)
Q Consensus        35 Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~-vG~~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~---  109 (423)
                      ||.|=|+ +|++|++|..+-..++..+- +|...=..+|.+.||+|++-+.++--+...++-...-+..++.-..++   
T Consensus       237 fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~  316 (417)
T COG2223         237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV  316 (417)
T ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHH
Confidence            3444333 67899999999877665333 333335679999999998766665554444433333223322211112   


Q ss_pred             -HHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          110 -LWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       110 -~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                       ++.+.......|.|    |-++-+-.-+-||++-|.|.|+.-+.-||+|..+-+..-..+
T Consensus       317 ~~~~~l~l~~~~G~G----nGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~  373 (417)
T COG2223         317 FVAVFLALFVFAGLG----NGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSL  373 (417)
T ss_pred             HHHHHHHHHHHhccC----cchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHH
Confidence             22111122223333    334555666789999999999999999999977766555544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=89.23  E-value=0.03  Score=60.07  Aligned_cols=118  Identities=18%  Similarity=0.171  Sum_probs=84.9

Q ss_pred             hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeee
Q 014518           42 IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG  120 (423)
Q Consensus        42 Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~  120 (423)
                      .|+.+|.+..+...+-.+..+|+.+ ++..+.+-++.++...+.++.+...++...+.+     .  ++.|..++..++.
T Consensus       245 a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal-----~--~~~~~~~~~l~l~  317 (524)
T PF05977_consen  245 ARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL-----S--PSFWLALIALFLA  317 (524)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc-----c--hHHHHHHHHHHHH
Confidence            4678999999999988888899877 677888888888877777777665554444322     2  3577778888888


Q ss_pred             cCCceeeehhhhhhhhhcCCC-CCCCeeEeecccc----chhhHHHHHHHH
Q 014518          121 NNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFA----GLGGAILTQVYT  166 (423)
Q Consensus       121 g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~----GLSaaI~s~i~~  166 (423)
                      |.+....++..-....++=|+ .||.+.++....+    -+|+.+.+.+..
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888777666667778896 5999999865433    244555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=88.99  E-value=0.056  Score=55.61  Aligned_cols=131  Identities=12%  Similarity=0.071  Sum_probs=75.8

Q ss_pred             hhcccccccccchhhhhhcc--CcchhHHHhhhhcccccccc-ccccchhhhhhhhHH-HHHHHHhhhhhcceeeeeeee
Q 014518           27 SCAGIGYLFGSISPVIKSSL--NYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWG-ALLVGALQNFIGYGWVWLIVT  102 (423)
Q Consensus        27 l~~Gt~Y~Fs~yS~~Lk~~l--~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~-vl~iG~~~~~~Gy~~~~l~~~  102 (423)
                      +..+..|.+..|-|.+-+++  ++++.+...+...-.++..+ .+..|.+.||++.|. ...++.++..+++.+.  ...
T Consensus       253 ~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~--~~~  330 (412)
T TIGR02332       253 CLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA--SAT  330 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH--Hhc
Confidence            34456777888888888775  66777777777777777766 567999999998554 3444444444443221  111


Q ss_pred             CCCCCchHHHHhhheeeecCCceeeehhhhhhh-hhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518          103 GRAPVLPLWAMCILIFVGNNGETYFNTAALVSC-VQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       103 g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~-~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                         ..+.....++..  .+.|... ......++ ...|| ++||++.|+......+++++-..+.
T Consensus       331 ---~~~~~~~~~~~~--~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~  389 (412)
T TIGR02332       331 ---DHNLIQLLGIIM--ASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLI  389 (412)
T ss_pred             ---CCHHHHHHHHHH--HHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence               111222222221  1222211 12222233 34576 5799999999988888877664443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=88.94  E-value=0.11  Score=52.76  Aligned_cols=149  Identities=8%  Similarity=-0.095  Sum_probs=75.0

Q ss_pred             hhhcCcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhccccccccccccchhhhhhhh---HHHHHH-
Q 014518           10 SFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPI---WGALLV-   85 (423)
Q Consensus        10 ~~~~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~g~~~G~l~D~~gP---~~vl~i-   85 (423)
                      +..++|.+...+.. .....+..|.+..|-|++-++.|++.+ .........+++.+|  .|.+.|+...   |..... 
T Consensus       187 ~ll~~~~~~~~~~~-~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g--~~~~~d~~~r~~~r~~~~~~  262 (368)
T TIGR00903       187 ALAGRKDLWIIGAI-LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG--VAVIPDRVARAGLRSIYIRA  262 (368)
T ss_pred             HHHcChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH--HHHhhHHhhhhhhHHHHHHH
Confidence            44455554333322 333455577888888998888888865 333333223333333  3677777643   222221 


Q ss_pred             HHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHH
Q 014518           86 GALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        86 G~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      ..++..++...+  .+.+   + +.+.+ .+.++++...............+.||. .||++.|+.-+.--+++.+...+
T Consensus       263 ~~~~~a~~~~~~--~~~~---~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~  335 (368)
T TIGR00903       263 AALLIAAFFLAL--AFEL---N-RLALF-AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALA  335 (368)
T ss_pred             HHHHHHHHHHHH--HHcc---c-cHHHH-HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHH
Confidence            222222222111  1222   1 12222 222334343333333333345688985 79999999998777776555444


Q ss_pred             HHHhc
Q 014518          165 YTMIH  169 (423)
Q Consensus       165 ~~~~f  169 (423)
                      --.+.
T Consensus       336 ~~~~~  340 (368)
T TIGR00903       336 AMLFI  340 (368)
T ss_pred             HHHHh
Confidence            44443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=88.45  E-value=0.012  Score=62.39  Aligned_cols=100  Identities=14%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             cccccchhhhhhhhHH-------HHHHHHhhhhhcceee-----eeeeeCCCCCchHHHHhhheeeecCCceeeehhhhh
Q 014518           66 VGFLAGSLCEVLPIWG-------ALLVGALQNFIGYGWV-----WLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALV  133 (423)
Q Consensus        66 ~g~~~G~l~D~~gP~~-------vl~iG~~~~~~Gy~~~-----~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~  133 (423)
                      ++++.|.++||+++|.       -+.+|.++..+|+..+     +....+.  ..++|.+....++.|.|-.+.....+.
T Consensus       325 ~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~i~~~~l~g~Ge~~~~~~g~~  402 (489)
T PRK10207        325 ASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQG--LTSPWFIVLVYLFQSLGELFISALGLA  402 (489)
T ss_pred             HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4667899999999886       3677777766666432     1221111  124555666777788999999999999


Q ss_pred             hhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHH
Q 014518          134 SCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTM  167 (423)
Q Consensus       134 t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~  167 (423)
                      ...+.=|. .+|.+.|+.....++|+++=+.+..-
T Consensus       403 ~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~  437 (489)
T PRK10207        403 MIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF  437 (489)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999995 58999999998888888887766543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=88.40  E-value=0.011  Score=59.89  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=43.5

Q ss_pred             hHHHHHHhhhHHHHHHHHHhcCCCCceeecchhhhhhhcCCCCce--eeeehhh-Hhhhhhcccccccceeec
Q 014518          353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMIS-IWNFLGRVGGGYFSEIIV  422 (423)
Q Consensus       353 t~~q~l~t~dFWllf~~~~~g~G~Gl~~InN~gqI~~alg~~~~~--~~VsL~S-i~n~~GRl~~G~~SD~l~  422 (423)
                      ++++.+|++.+|......++...+...+..-.....+.+|+++.+  ...++.+ +...+|.+..|.+.||+.
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g  272 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAG  272 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            456788888888777666655433222222233444556776654  3445554 466788999999999864

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=87.83  E-value=0.037  Score=57.36  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             hhhccccccccc-cccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehh--hh
Q 014518           56 LGVAKDLGDSVG-FLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTA--AL  132 (423)
Q Consensus        56 i~~a~~vG~~~g-~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta--~l  132 (423)
                      +.....+...++ ++++.+.||+|+|.++.++.+...++...+++.  .   ..+.|.+.+..++.|.|.+.....  ++
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI--P---PSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--C---cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444443 468899999999999988877655433322221  1   123444444445555655543321  22


Q ss_pred             hhhhhcC-CCC-----CCCeeEee----ccccchhhHHHHHHHH
Q 014518          133 VSCVQNF-PKS-----RGPVVGIL----KGFAGLGGAILTQVYT  166 (423)
Q Consensus       133 ~t~~~nF-P~~-----RG~vvgil----k~~~GLSaaI~s~i~~  166 (423)
                      .+-+-.+ +.+     .|...|+.    |-..++++.+.+.+..
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211111 111     23333432    5666677777766644

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=87.78  E-value=0.24  Score=52.56  Aligned_cols=133  Identities=15%  Similarity=0.173  Sum_probs=84.8

Q ss_pred             HhhhhcCcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhH--HHHH
Q 014518            8 FVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIW--GALL   84 (423)
Q Consensus         8 ~~~~~~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~--~vl~   84 (423)
                      .|+..+.|-+......+.....|.+=..+...--.++.+|++++|+..+....++.+.+ .+..|++.||+|||  .++.
T Consensus       274 ~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~  353 (477)
T PF11700_consen  274 FKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL  353 (477)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            34444455333333333333344443344444445678999999999999988888877 67899999999999  5655


Q ss_pred             HHHhh----hhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCC
Q 014518           85 VGALQ----NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSR  143 (423)
Q Consensus        85 iG~~~----~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~R  143 (423)
                      ++.+.    ...|++.++....|.-   +-|.+.++.++.|...+..+.++=..-.+-=|..|
T Consensus       354 ~~l~~~~~i~~~g~~G~~~~~~g~~---~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~  413 (477)
T PF11700_consen  354 ISLILWIIIPLYGLFGFWPSFFGLK---SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR  413 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCcc---cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch
Confidence            55533    3456665555533322   45667777778888787777766655556557644

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=87.54  E-value=0.044  Score=56.46  Aligned_cols=151  Identities=20%  Similarity=0.282  Sum_probs=87.7

Q ss_pred             hhHhhhhcCc-chhHHHHHHHH-hhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHH
Q 014518            6 ERFVSFFNNR-WLVFVAAMWIQ-SCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGA   82 (423)
Q Consensus         6 ~~~~~~~~~R-w~~l~a~~~i~-l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~v   82 (423)
                      +..++..++| |..+..+.+.+ ++.+..-.+..|  -.+..++.+ ...+.+.....++..+ .++.+.+.||+|+|.+
T Consensus       216 ~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y--~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~  292 (428)
T PF13347_consen  216 DSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPY--YFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV  292 (428)
T ss_pred             cchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence            3345555454 55555555543 333332222222  334445555 3445566666677655 5679999999999999


Q ss_pred             HHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehh--hhhhhhhcC------CCCCCCeeEe----e
Q 014518           83 LLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTA--ALVSCVQNF------PKSRGPVVGI----L  150 (423)
Q Consensus        83 l~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta--~l~t~~~nF------P~~RG~vvgi----l  150 (423)
                      ..+|.+...+++.++|..-.     .+.|.+.+..++.|.|.+..++.  ++.+-+-.+      .++.|...|+    .
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~  367 (428)
T PF13347_consen  293 YIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFI  367 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhh
Confidence            99999998888887666544     24567777777777777654422  222222211      1223544443    4


Q ss_pred             ccccchhhHHHHHH
Q 014518          151 KGFAGLGGAILTQV  164 (423)
Q Consensus       151 k~~~GLSaaI~s~i  164 (423)
                      |-..|+++.+.+.+
T Consensus       368 k~~~~la~~i~g~~  381 (428)
T PF13347_consen  368 KIGQGLAGAIVGLL  381 (428)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55566666666544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=87.21  E-value=0.058  Score=55.64  Aligned_cols=135  Identities=16%  Similarity=0.099  Sum_probs=92.5

Q ss_pred             HhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCC
Q 014518           26 QSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGR  104 (423)
Q Consensus        26 ~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~  104 (423)
                      ..++|.-=.|+..+|-|++..|+|.++++.+=...-+|..+ .+.+|++.|| +++..+.....+..+-+..  +.+.+.
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~--l~~~~~  298 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA--LTFTGA  298 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH--HHHhcc
Confidence            34455555677799999999999999999966666666666 4579999999 8888888776665555544  333332


Q ss_pred             CCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeecccc----chhhHHHHHHHHH
Q 014518          105 APVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFA----GLGGAILTQVYTM  167 (423)
Q Consensus       105 i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~----GLSaaI~s~i~~~  167 (423)
                      .    .|......++.|++.+..-..-.+-..+--|++++.+.++-.+.+    ++++.+=..++..
T Consensus       299 ~----~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~  361 (394)
T COG2814         299 S----PALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA  361 (394)
T ss_pred             h----HHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2    233333333455555555556666777766999999988877654    5666666666655

>PRK09848 glucuronide transporter; Provisional

Probab=86.75  E-value=0.011  Score=61.28  Aligned_cols=112  Identities=13%  Similarity=0.052  Sum_probs=63.5

Q ss_pred             hhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHH-----HHHHHHhhhhhcceeeeeeeeCCCCCchHHH
Q 014518           39 SPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWG-----ALLVGALQNFIGYGWVWLIVTGRAPVLPLWA  112 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~-----vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~  112 (423)
                      ..-+++.+|++..+..++....-+...+ .++.|.+.||.++|+     .+++|++...+...+++..-.+......++.
T Consensus        32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (448)
T PRK09848         32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY  111 (448)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence            3468888999999999977766666654 888999999985532     5566666544333332222212111112222


Q ss_pred             HhhheeeecCCceeeehh--hhhhhhhcCCCCCCCeeEee
Q 014518          113 MCILIFVGNNGETYFNTA--ALVSCVQNFPKSRGPVVGIL  150 (423)
Q Consensus       113 l~~f~~l~g~g~~~~~ta--~l~t~~~nFP~~RG~vvgil  150 (423)
                      .+....+.+.+.+..+++  ++...+..=|++|....++-
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r  151 (448)
T PRK09848        112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAAR  151 (448)
T ss_pred             HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHH
Confidence            233333344445544432  34455555577887654443

>PRK09669 putative symporter YagG; Provisional

Probab=86.72  E-value=0.086  Score=54.59  Aligned_cols=120  Identities=16%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             hhhccCcchhHHHhhhhcccccc-ccccccchhhhhhh----h-HHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhh
Q 014518           42 IKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLP----I-WGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI  115 (423)
Q Consensus        42 Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~g----P-~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~  115 (423)
                      +.+.+|+|..+..++-...-+-. ..-++.|.+.||.+    + |+.+++|++...+...++|..-........+|.+..
T Consensus        36 ~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~  115 (444)
T PRK09669         36 YTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVT  115 (444)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            56779999999999655555444 55889999999954    3 466666766655555444332211011111333333


Q ss_pred             heeeecCCceeee--hhhhhhhhhcCCCCCCCeeEeeccccchhhHHHH
Q 014518          116 LIFVGNNGETYFN--TAALVSCVQNFPKSRGPVVGILKGFAGLGGAILT  162 (423)
Q Consensus       116 f~~l~g~g~~~~~--ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s  162 (423)
                      +... +.+.+..+  -.++.+.+..=|++|+...+.-..+..+++.+.+
T Consensus       116 ~~l~-~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~  163 (444)
T PRK09669        116 YILL-SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVS  163 (444)
T ss_pred             HHHH-HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322 22222222  2245555555567888766555444444444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=86.47  E-value=0.041  Score=56.36  Aligned_cols=112  Identities=14%  Similarity=0.084  Sum_probs=58.4

Q ss_pred             hhhccCcchhHHHhhhhcccccc-ccccccchhh-hhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheee
Q 014518           42 IKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLC-EVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFV  119 (423)
Q Consensus        42 Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~-D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l  119 (423)
                      +++..+ +..+...+-....++. ....+.+.+. ||++++..+.++.+...+++.++.  +.+     +.+.+.+..++
T Consensus       235 ~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~--~~~-----~~~~~~~~~~l  306 (400)
T PRK11646        235 VNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG--MVS-----NLQQLFTLICL  306 (400)
T ss_pred             HHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--Hhh-----hHHHHHHHHHH
Confidence            445444 5556555433222333 2344445555 456777677777777666665432  111     12222223333


Q ss_pred             ecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHH
Q 014518          120 GNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL  161 (423)
Q Consensus       120 ~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~  161 (423)
                      .+.|....+........+..| ++||++.|+.-...++++++=
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig  349 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIG  349 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhc
Confidence            344444333333334446667 689999998877666655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=85.76  E-value=0.066  Score=56.77  Aligned_cols=137  Identities=9%  Similarity=0.053  Sum_probs=82.8

Q ss_pred             hhcccccccccchhh---hhhccCcchhHHHhhhhcccccc-ccccccchhhh----hhhhHHHHHHH-Hhhhhhcceee
Q 014518           27 SCAGIGYLFGSISPV---IKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCE----VLPIWGALLVG-ALQNFIGYGWV   97 (423)
Q Consensus        27 l~~Gt~Y~Fs~yS~~---Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D----~~gP~~vl~iG-~~~~~~Gy~~~   97 (423)
                      .+.|..+.|++..+.   .-+.+|++..+...+-.++.+.. .+.++.|.+.|    |+|+|.+++++ ++...+++.++
T Consensus        12 ~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll   91 (477)
T TIGR01301        12 VAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI   91 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            344556666554433   44678999999999766666655 44778999999    49998887774 66666666655


Q ss_pred             eeeee------CCCCC--ch--HHHHhhheeeecCCceeeehhhhhhhhhcCCCC-C--CCeeEeeccccchhhHHHHH
Q 014518           98 WLIVT------GRAPV--LP--LWAMCILIFVGNNGETYFNTAALVSCVQNFPKS-R--GPVVGILKGFAGLGGAILTQ  163 (423)
Q Consensus        98 ~l~~~------g~i~~--~~--~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~-R--G~vvgilk~~~GLSaaI~s~  163 (423)
                      +.+-+      .+.+.  .+  .+...+...+...+......++-.-....+|++ |  +.+-++.-.+.++|+.+-..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~  170 (477)
T TIGR01301        92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYA  170 (477)
T ss_pred             HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43211      01100  01  122233333344455555556666677888853 3  67888777777777665544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10054 putative transporter; Provisional

Probab=85.47  E-value=0.17  Score=51.72  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             ccCcchhHHHh-hhhccccccccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCC
Q 014518           45 SLNYNQKQIAR-LGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNG  123 (423)
Q Consensus        45 ~l~~sq~~l~~-i~~a~~vG~~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g  123 (423)
                      +.+.++..... ++..........++.|.+.||+++|.++.+|.+...+|+..+... .    + ++|.+.+...+.+.|
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~g  311 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-G----N-SLLLWGMSAAVFTVG  311 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-c----h-HHHHHHHHHHHHHHH
Confidence            45566666554 333222323446788999999999999999988888888664322 1    1 344444444555555


Q ss_pred             ceeeehhhhhhhhhcC-C-CCCCCeeEe
Q 014518          124 ETYFNTAALVSCVQNF-P-KSRGPVVGI  149 (423)
Q Consensus       124 ~~~~~ta~l~t~~~nF-P-~~RG~vvgi  149 (423)
                      .+.... +..+.+.+. | +.||+..|.
T Consensus       312 ~~~~~p-~~~~~~~~~~p~~~~~~~~~~  338 (395)
T PRK10054        312 EIIYAP-GEYMLIDHIAPPGMKASYFSA  338 (395)
T ss_pred             HHHHHh-hHHHHHHHhCCcccceehHhH
Confidence            433221 223344444 5 568887664

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=85.09  E-value=0.13  Score=52.27  Aligned_cols=85  Identities=19%  Similarity=0.104  Sum_probs=63.8

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhcccccc-ccccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ..|.|.+|+     +||++..|++.+=.++-+-. .+|.+.|.+.|++|+|..+++-+++..+..+.      .+.  +.
T Consensus        54 GpY~Y~LY~-----~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~------k~~--~~  120 (354)
T PF05631_consen   54 GPYLYALYE-----SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT------KHS--SN  120 (354)
T ss_pred             cchhHHHHH-----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH------Hhc--cc
Confidence            579998883     59999999999777777666 55999999999999999999999987766543      333  24


Q ss_pred             HHHHhhheeeecCCceeee
Q 014518          110 LWAMCILIFVGNNGETYFN  128 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~  128 (423)
                      ++.+.+=-+++|.+.+...
T Consensus       121 ~~~L~~GRvlgGiaTSLLf  139 (354)
T PF05631_consen  121 YPVLLLGRVLGGIATSLLF  139 (354)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            5556655566666665433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=82.55  E-value=0.11  Score=55.47  Aligned_cols=143  Identities=22%  Similarity=0.128  Sum_probs=87.2

Q ss_pred             HHHHHhhcccccccccchhhhhhc-cCcchhHHHhhhhcccccccc-ccccchhhhh----hhhHHHHHHHHhh-hhhcc
Q 014518           22 AMWIQSCAGIGYLFGSISPVIKSS-LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV----LPIWGALLVGALQ-NFIGY   94 (423)
Q Consensus        22 ~~~i~l~~Gt~Y~Fs~yS~~Lk~~-l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~----~gP~~vl~iG~~~-~~~Gy   94 (423)
                      ++.--.+-..+|.|+-|.|.+-+. .|+|..+.+.+++..++|+.+ ++.+|.+.||    ...|..+.+...+ ...|+
T Consensus       279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~  358 (495)
T KOG2533|consen  279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGA  358 (495)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            334444556789999999988777 679999999999999999988 6679999999    6666665555443 44664


Q ss_pred             eeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC--CCCCCeeEeeccccchhhHHHHHHHHHhcCC
Q 014518           95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP--KSRGPVVGILKGFAGLGGAILTQVYTMIHAP  171 (423)
Q Consensus        95 ~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP--~~RG~vvgilk~~~GLSaaI~s~i~~~~f~~  171 (423)
                      ..+...  . . . +.....+++...+++.  ....+..-+-.|-.  .+|=++++......|.++++-.|++.+.-.|
T Consensus       359 ~~l~~~--~-~-~-~~~~~~~~~~~~~~~~--~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap  430 (495)
T KOG2533|consen  359 ISLLAA--A-V-L-PGAYGAFLIGPYGLIA--TAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP  430 (495)
T ss_pred             HHHHhh--c-c-c-hHHhHHHHhcchhhHH--HHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence            443222  1 1 1 1111112222222222  22233333334443  2344556666677788888888877665444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=82.54  E-value=0.62  Score=49.30  Aligned_cols=149  Identities=15%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             hhhhccCcchhHHHh-hhhccccccccccccchhhhhh-hhHHHHHHHHhhhhhcceeeeeee-eCCCCCchHHHHhhhe
Q 014518           41 VIKSSLNYNQKQIAR-LGVAKDLGDSVGFLAGSLCEVL-PIWGALLVGALQNFIGYGWVWLIV-TGRAPVLPLWAMCILI  117 (423)
Q Consensus        41 ~Lk~~l~~sq~~l~~-i~~a~~vG~~~g~~~G~l~D~~-gP~~vl~iG~~~~~~Gy~~~~l~~-~g~i~~~~~~~l~~f~  117 (423)
                      ++++-+|+||++-.. .+..+..-=..-+++|++.||+ |.|.++++|++...+|+..+...= .|..   .+ -+.+..
T Consensus        51 ~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~---gl-~i~L~~  126 (498)
T COG3104          51 QLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG---GL-YIGLAL  126 (498)
T ss_pred             hccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc---HH-HHHHHH
Confidence            344447799999876 4443333323377899999996 999999999999999999876653 3322   12 122222


Q ss_pred             eeecCCceeeehhhhhhhhhcCCC--CCCCeeEeeccccc--hhhHHHHHHHHHhcCCCccc-eeeeeeechhhhhhhhe
Q 014518          118 FVGNNGETYFNTAALVSCVQNFPK--SRGPVVGILKGFAG--LGGAILTQVYTMIHAPDHAN-LIFMVAVGPAMVVIALM  192 (423)
Q Consensus       118 ~l~g~g~~~~~ta~l~t~~~nFP~--~RG~vvgilk~~~G--LSaaI~s~i~~~~f~~~~~~-fllfla~~~~~v~~~~~  192 (423)
                      .  +.|.+.+=...-.-.-+-+|.  .| .-.|...=|.|  ++ ++++-+-......+... .-+-++.+....+++..
T Consensus       127 I--~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiG-sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f  202 (498)
T COG3104         127 I--IVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIG-SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF  202 (498)
T ss_pred             H--HhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            2  245554433333333455752  34 44454444444  23 34444444444333331 22223334555666666


Q ss_pred             eeEec
Q 014518          193 FIIRP  197 (423)
Q Consensus       193 ~fvr~  197 (423)
                      +..|.
T Consensus       203 ~~~~r  207 (498)
T COG3104         203 LLGRR  207 (498)
T ss_pred             HHccc
Confidence            66663

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=81.95  E-value=0.1  Score=55.25  Aligned_cols=144  Identities=13%  Similarity=0.090  Sum_probs=90.7

Q ss_pred             HHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccc-ccccccchhhhhhhhHHHHHHHHhhhhhcceee--eee
Q 014518           24 WIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWV--WLI  100 (423)
Q Consensus        24 ~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~-~~g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~--~l~  100 (423)
                      ..|..+|. ++=..||-.+=++-|+++.+.....++..+-. .+.+.+.++.||.|+|+.++++..++.+--..+  .+.
T Consensus       279 ~~qq~sGi-~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~  357 (485)
T KOG0569|consen  279 FAQQFSGI-NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALF  357 (485)
T ss_pred             HHHHhcCc-ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444443 44567999999999999997777666544444 347889999999999999999988866543332  222


Q ss_pred             eeCCCC-CchH-HHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          101 VTGRAP-VLPL-WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       101 ~~g~i~-~~~~-~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      ...... -.++ ...|++..+..++.+..-.+ .--...=|| ..|.++........-++..+....|.-..
T Consensus       358 l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~-~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  358 LSNSFGSWLSYLCIAAIFLFIISFAIGPGPIP-WFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhhhcCCCchh-HHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222221 1111 11233333333333322222 223346676 68999999998888888888887776654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=81.71  E-value=0.093  Score=54.07  Aligned_cols=158  Identities=13%  Similarity=0.156  Sum_probs=94.9

Q ss_pred             hhhhhhccCcchhHHHhhhh-ccccccccccccchhhh----hhhh-HHHHHHHHhhhhhcceeeeeeee-CCCC-CchH
Q 014518           39 SPVIKSSLNYNQKQIARLGV-AKDLGDSVGFLAGSLCE----VLPI-WGALLVGALQNFIGYGWVWLIVT-GRAP-VLPL  110 (423)
Q Consensus        39 S~~Lk~~l~~sq~~l~~i~~-a~~vG~~~g~~~G~l~D----~~gP-~~vl~iG~~~~~~Gy~~~~l~~~-g~i~-~~~~  110 (423)
                      .+-+.+.++++.....++-. ..-++...-++.|.+.|    |+|+ |+-+++|++...+++.++|...- +.-. ..-+
T Consensus        25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~  104 (428)
T PF13347_consen   25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV  104 (428)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence            44456778999999988544 34444455889999999    6785 56667899999999999886622 2221 1124


Q ss_pred             HHHhhheeeecCCceeeehh--hhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHHHhc---CCC-cc-ceeeeeee-
Q 014518          111 WAMCILIFVGNNGETYFNTA--ALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIH---APD-HA-NLIFMVAV-  182 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta--~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~~~f---~~~-~~-~fllfla~-  182 (423)
                      |.+..+.++ ..+-++.++.  ++...+.+=|++|....+.-..+..+++.+.+.+...+.   +++ .. +|.....+ 
T Consensus       105 ~~~~~~~l~-~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~  183 (428)
T PF13347_consen  105 WLFVFYILF-DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL  183 (428)
T ss_pred             HHHHHHHHH-HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence            444444433 5666666653  344444444568998888877776666655555544433   433 32 45444333 


Q ss_pred             --chhhhhhhheeeEec
Q 014518          183 --GPAMVVIALMFIIRP  197 (423)
Q Consensus       183 --~~~~v~~~~~~fvr~  197 (423)
                        +..+..+++...+|.
T Consensus       184 ~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  184 AIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHhhhhhheeee
Confidence              233334444555555

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=80.20  E-value=0.56  Score=49.39  Aligned_cols=141  Identities=16%  Similarity=0.159  Sum_probs=85.4

Q ss_pred             hhhhHhhhhcCcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHh-----hhhccc----ccccccc-ccchh
Q 014518            4 FQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIAR-----LGVAKD----LGDSVGF-LAGSL   73 (423)
Q Consensus         4 ~~~~~~~~~~~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~-----i~~a~~----vG~~~g~-~~G~l   73 (423)
                      |.+...++.-+| +.-.++.|..+-. ..|.+++++..+-+..++...+-+.     ++....    .+..-|. +...+
T Consensus       294 F~~~f~~~hg~~-Llgt~~~WFllDi-afy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~  371 (538)
T KOG0252|consen  294 FSRLFLRWHGKH-LLGTAGTWFLLDI-AFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYF  371 (538)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhhhh-hhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence            444444442233 3334555555444 3599999999998877765544333     222211    1212133 57789


Q ss_pred             hhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCC-CchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEe
Q 014518           74 CEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP-VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGI  149 (423)
Q Consensus        74 ~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~-~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgi  149 (423)
                      .|+.|++++.+.|-++..+=++.+.-.+++.+. .+-+....+..+++++|=   ++.+.+--.++|| +-||+.=||
T Consensus       372 id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FParvR~t~hGI  446 (538)
T KOG0252|consen  372 IDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFPARVRSTCHGI  446 (538)
T ss_pred             eehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhchHHHhhhhhhH
Confidence            999999999999988877777766667775442 223444555555555554   3345667789999 469976554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.23
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.08
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.71
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.97
2xut_A	524	Proton/peptide symporter family protein; transport	97.71
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.52
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.36
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.26
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.16
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.35
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	95.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	94.71
2xut_A	524	Proton/peptide symporter family protein; transport	92.11

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.23  E-value=1.9e-14  Score=144.40  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=122.7

Q ss_pred             cCcchhHHHHHHHHhhccc-ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhh
Q 014518           13 NNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN   90 (423)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt-~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~   90 (423)
                      +++|..++.......+.|. .+.++.+-|.+++.+|+|.+|...+.++..+|..+ .++.|.+.||+|+|.++++|.+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            4455555555555555554 36788889999999999999999999988998855 889999999999999999999999


Q ss_pred             hhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHHHHh
Q 014518           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI  168 (423)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~  168 (423)
                      .+|..+.+..  ..  .+++|.+.+..++.|.|.+..+.++.....+++| ++||.+.|+.-...+++..+-..+....
T Consensus       102 ~~~~~~~~~~--~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A          102 ALGAALFWPA--AE--IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHH--HH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHhc--cc--cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998876432  11  2357888888899999999999999999999998 6799999999999888888776554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.08  E-value=1.2e-13  Score=138.73  Aligned_cols=151  Identities=14%  Similarity=0.168  Sum_probs=119.6

Q ss_pred             hhcCcchhHHHHHHHHhhcc-cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHh
Q 014518           11 FFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL   88 (423)
Q Consensus        11 ~~~~Rw~~l~a~~~i~l~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~   88 (423)
                      ..+.||..+..........+ ..+.++.+-|.+.+++ +|.+|...+..+..++..+ .++.|.+.||+|+|.++++|.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            34556776666666665555 4577888899999999 9999999998888888866 7899999999999999999999


Q ss_pred             hhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518           89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus        89 ~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      ...+|..+....... .  +++|.+.+..++.|.|.+..+.++.....++|| ++||.+.|+.-...+++..+-..+.
T Consensus       101 ~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             HHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            988888776442111 1  245567777788899999999999999999998 6799999998888888776654443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.71  E-value=8.5e-12  Score=122.93  Aligned_cols=127  Identities=10%  Similarity=-0.039  Sum_probs=105.0

Q ss_pred             ccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchH
Q 014518           32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL  110 (423)
Q Consensus        32 ~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~  110 (423)
                      .+.++.+-|.+++++|+|.+|...+..+..++..+ .++.|.+.||+|+|.++.++.+...++..++..+       +++
T Consensus        16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   88 (375)
T 2gfp_A           16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL   88 (375)
T ss_dssp             HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred             HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence            44555666778999999999999988888888855 7899999999999999999999988888775432       367


Q ss_pred             HHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHHH
Q 014518          111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       111 ~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      |.+.+..++.|.+.+..+.+......+.+| ++||.+.++.-...+++..+-..+.
T Consensus        89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  144 (375)
T 2gfp_A           89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG  144 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            788888888899999888888888899996 7899999998888888766654443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.97  E-value=1e-07  Score=97.06  Aligned_cols=124  Identities=13%  Similarity=0.028  Sum_probs=95.6

Q ss_pred             cchhhhhhc-----cCcchhHHHhhhhcccccccc-ccccchhhhh-hhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           37 SISPVIKSS-----LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        37 ~yS~~Lk~~-----l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~-~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ...+-+++.     +|+|.++...+.....++..+ .+++|.+.|| +|+|.++.+|.+...+|..++..+       ++
T Consensus        35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~  107 (491)
T 4aps_A           35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FG  107 (491)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CS
T ss_pred             HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hh
Confidence            344555555     999999999988888888866 7889999999 899999999999998888775431       24


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCC-CC--CCCeeEeeccccchhhHHHHHHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KS--RGPVVGILKGFAGLGGAILTQVYTM  167 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~--RG~vvgilk~~~GLSaaI~s~i~~~  167 (423)
                      +|.+.+..++.|.|.+....++.....+.|| ++  ||.+.++.-....+++.+-..+...
T Consensus       108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  168 (491)
T 4aps_A          108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA  168 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence            5667777778889999888888888889997 45  6667777666666666554444433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.71  E-value=4.2e-07  Score=93.34  Aligned_cols=121  Identities=10%  Similarity=0.081  Sum_probs=92.9

Q ss_pred             cchhhhhhccC------cchhHHHhhhhcccccccc-ccccchhhhhh-hhHHHHHHHHhhhhhcceeeeeeeeCCCCCc
Q 014518           37 SISPVIKSSLN------YNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGALLVGALQNFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        37 ~yS~~Lk~~l~------~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~-gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~  108 (423)
                      ...+.+++.+|      +|..+...+.....++..+ .+++|.+.||+ |+|.++.++.+...+|+.++..+-      .
T Consensus        34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~------~  107 (524)
T 2xut_A           34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE------H  107 (524)
T ss_dssp             HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS------S
T ss_pred             HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc------c
Confidence            34455788899      9999999988888888865 77899999999 999999999999888887754321      1


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEe---eccccchhhHHHHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGI---LKGFAGLGGAILTQ  163 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgi---lk~~~GLSaaI~s~  163 (423)
                      ++|.+.+..++.|.|.+....+......+.|| ++||.+.++   ......+++.+-..
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~  166 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL  166 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777778888888888888888889997 468877666   55556666555433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.52  E-value=1.1e-06  Score=87.82  Aligned_cols=134  Identities=15%  Similarity=0.034  Sum_probs=94.5

Q ss_pred             ccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhh--hhHHHHHHHHhhhh-hcceeeeeeeeCCCC
Q 014518           32 GYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVL--PIWGALLVGALQNF-IGYGWVWLIVTGRAP  106 (423)
Q Consensus        32 ~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~--gP~~vl~iG~~~~~-~Gy~~~~l~~~g~i~  106 (423)
                      .+.+..|.|. +++.+|++..+...+.....++..+ .++.|.+.||+  |+|.++.++.+... +++.+++..-     
T Consensus       268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  342 (451)
T 1pw4_A          268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-----  342 (451)
T ss_dssp             HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-----
Confidence            4445555555 4455999999999877777777755 67899999999  99998888877765 6666544321     


Q ss_pred             CchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccch-hhHHHHHHHHHhcC
Q 014518          107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGL-GGAILTQVYTMIHA  170 (423)
Q Consensus       107 ~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GL-SaaI~s~i~~~~f~  170 (423)
                      ..+.|.+.+..++.|.+.+..+........+.+|. +||++.|+.-....+ ++++-..+.....+
T Consensus       343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~  408 (451)
T 1pw4_A          343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  408 (451)
T ss_dssp             TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11344555555566666666666666778889986 599999999888888 77776666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.36  E-value=4.3e-06  Score=84.95  Aligned_cols=157  Identities=12%  Similarity=0.058  Sum_probs=95.6

Q ss_pred             hhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHH-----HHHhhhhhcceeeeeee--eCCCCCchHH
Q 014518           40 PVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALL-----VGALQNFIGYGWVWLIV--TGRAPVLPLW  111 (423)
Q Consensus        40 ~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~-----iG~~~~~~Gy~~~~l~~--~g~i~~~~~~  111 (423)
                      ..+++.++.+..+...+.....++..+ +++.|.+.||+|+|....     +|.++..+++.++....  .+.....+.|
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (491)
T 4aps_A          308 TFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL  387 (491)
T ss_dssp             HHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH
T ss_pred             HHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH
Confidence            345555666655555555444455533 677999999999764433     77777777766654322  1111112344


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhcCCCccceeeeeeechhhhhhh
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA  190 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f~~~~~~fllfla~~~~~v~~~  190 (423)
                      .+.+..++.+.|.+...........+.+|+ +||++.|+.-....+++++-..+.....+......+..++....+..++
T Consensus       388 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (491)
T 4aps_A          388 WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIV  467 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            455556666777777777778888899985 5999999998888898888877765554444444444444444444444


Q ss_pred             heeeEe
Q 014518          191 LMFIIR  196 (423)
Q Consensus       191 ~~~fvr  196 (423)
                      ...+.|
T Consensus       468 ~~~~~~  473 (491)
T 4aps_A          468 LVFLSK  473 (491)
T ss_dssp             HHHC--
T ss_pred             HHHHHH
Confidence            433333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.26  E-value=5e-06  Score=84.33  Aligned_cols=132  Identities=16%  Similarity=0.065  Sum_probs=92.7

Q ss_pred             cccccch---hhhhhccCc--------chhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeee
Q 014518           33 YLFGSIS---PVIKSSLNY--------NQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI  100 (423)
Q Consensus        33 Y~Fs~yS---~~Lk~~l~~--------sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~  100 (423)
                      |..++++   +.+++.++.        +.++...+..+..+|..+ +++.|.+.||+|+|++++++.++..+|..+...+
T Consensus        26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~  105 (491)
T 4gc0_A           26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP  105 (491)
T ss_dssp             HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555   445555532        334455666677788877 5789999999999999999999888776553322


Q ss_pred             eeCCC-----------CCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518          101 VTGRA-----------PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus       101 ~~g~i-----------~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      -.+..           -+++++.+.+.=++.|.|.+.....+.+-.....| ++||...++......++..+-..+
T Consensus       106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~  181 (491)
T 4gc0_A          106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV  181 (491)
T ss_dssp             TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhc
Confidence            11110           13468888889999999999888888888888897 579998888777666655544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.16  E-value=5.6e-06  Score=83.13  Aligned_cols=133  Identities=14%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             ccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeee-eeeCCCCC
Q 014518           30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWL-IVTGRAPV  107 (423)
Q Consensus        30 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l-~~~g~i~~  107 (423)
                      +....++....-+++.+|+|..|...+.....++..+ .++.|.+.||+|+|.+++++.+...++...+.. .+....  
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~--   99 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL--   99 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3344456666668888999999999987777777766 778999999999999999988876553221110 010000  


Q ss_pred             chHHHHhhheeeecCCceeeehhhhhhhhhc---CCCCCCCeeEeeccccchhhHHHHHHHH
Q 014518          108 LPLWAMCILIFVGNNGETYFNTAALVSCVQN---FPKSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       108 ~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~n---FP~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                        .+.......+++.+.+..+.+........   ++++||.+.|.......+++++-..+..
T Consensus       100 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~  159 (417)
T 2cfq_A          100 --QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             --HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence              00111111223333333332222222222   3456788888887777777666554433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.96  E-value=2.2e-05  Score=78.09  Aligned_cols=128  Identities=12%  Similarity=-0.049  Sum_probs=86.2

Q ss_pred             ccccccccchhh--hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCC
Q 014518           30 GIGYLFGSISPV--IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP  106 (423)
Q Consensus        30 Gt~Y~Fs~yS~~--Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~  106 (423)
                      +..+.+..|.+.  +++.+|++..+...+.....++..+ .++.|.+.||+|+|.++.++.+...+++.++...     +
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~  346 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----G  346 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----C
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-----C
Confidence            344555555555  4567799999999977777777755 6789999999999999999999888887664332     1


Q ss_pred             CchHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHHHHHHHH
Q 014518          107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYT  166 (423)
Q Consensus       107 ~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI~s~i~~  166 (423)
                        +.+.+..+ ++.+.+.+..+........+.+|++|+.+.++.. ...+++++...+.-
T Consensus       347 --~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g  402 (438)
T 3o7q_A          347 --GHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMG  402 (438)
T ss_dssp             --HHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred             --CcHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHH
Confidence              22222222 3344555555556666668999988988888766 33355555444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.35  E-value=0.00019  Score=72.56  Aligned_cols=133  Identities=15%  Similarity=0.076  Sum_probs=87.4

Q ss_pred             cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCch
Q 014518           31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP  109 (423)
Q Consensus        31 t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~  109 (423)
                      ..+....|++.+.+..+.+..+....+....+...+ .++++++.||+|+|..++++.....++...+...+....+. .
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~-~  370 (491)
T 4gc0_A          292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-I  370 (491)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-H
T ss_pred             hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-H
Confidence            456677899999999999888877666555555544 67899999999999999999888777665554444433321 2


Q ss_pred             HHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHH
Q 014518          110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVY  165 (423)
Q Consensus       110 ~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~  165 (423)
                      ....+++.++.+.+.++. ..+-.-....||. .||++.|+..+..-+++.+.+.+.
T Consensus       371 ~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~  426 (491)
T 4gc0_A          371 VALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF  426 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333332 1223345678995 599999888777777777665443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=95.91  E-value=3.1e-05  Score=75.69  Aligned_cols=124  Identities=15%  Similarity=0.165  Sum_probs=80.6

Q ss_pred             ccccccchhh-hhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhh-hhhcceeeeeeeeCCCCCc
Q 014518           32 GYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ-NFIGYGWVWLIVTGRAPVL  108 (423)
Q Consensus        32 ~Y~Fs~yS~~-Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~-~~~Gy~~~~l~~~g~i~~~  108 (423)
                      .+.+..|.|. +++.+|+|..+...+.....+|..+ +++.|.+.||.+++  +.++... ...|..++......   ..
T Consensus       215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~  289 (375)
T 2gfp_A          215 IAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VM  289 (375)
T ss_dssp             HHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cc
Confidence            3344444444 4556899999999887777788755 67899999999984  3344433 34555443222211   12


Q ss_pred             hHHHHhhheeeecCCceeeehhhhhhhhhcCCCCCCCeeEeeccccchhhHH
Q 014518          109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAI  160 (423)
Q Consensus       109 ~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~~RG~vvgilk~~~GLSaaI  160 (423)
                      +.|.+.+..++.+.+.+..+.....-..+.+|++||++.|+......+++++
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~  341 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGV  341 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHH
Confidence            4555555666667777777777777778889988998888776555554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=94.71  E-value=0.00051  Score=68.70  Aligned_cols=91  Identities=12%  Similarity=0.006  Sum_probs=58.7

Q ss_pred             ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCC
Q 014518           67 GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGP  145 (423)
Q Consensus        67 g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~  145 (423)
                      .++.|.+.||+|+|.++.++.+...+++.++..     .+  +.|.+.+..++.+.+......+......+.||. .||+
T Consensus       276 ~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~  348 (417)
T 2cfq_A          276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----AT--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSAT  348 (417)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CC--SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            567999999999999999888887777655421     11  233444444444444444444455677788984 5999


Q ss_pred             eeEee-ccccchhhHHHHHH
Q 014518          146 VVGIL-KGFAGLGGAILTQV  164 (423)
Q Consensus       146 vvgil-k~~~GLSaaI~s~i  164 (423)
                      +.|+. -...++++.+-..+
T Consensus       349 ~~g~~~~~~~~lg~~~gp~l  368 (417)
T 2cfq_A          349 IYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             HHHHHHTTTHHHHHHHHTHH
T ss_pred             HHHHHHHHHHhHHHHHhhhh
Confidence            88884 55555666554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=92.11  E-value=0.0088  Score=60.90  Aligned_cols=104  Identities=11%  Similarity=0.034  Sum_probs=67.0

Q ss_pred             ccccchhh----hhhh----hHHHHHHHHhhhhhcceeeeeeeeCC--CCCchHHHHhhheeeecCCceeeehhhhhhhh
Q 014518           67 GFLAGSLC----EVLP----IWGALLVGALQNFIGYGWVWLIVTGR--APVLPLWAMCILIFVGNNGETYFNTAALVSCV  136 (423)
Q Consensus        67 g~~~G~l~----D~~g----P~~vl~iG~~~~~~Gy~~~~l~~~g~--i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~  136 (423)
                      +.+.|.+.    |+.|    ++..+.+|.+...+++.++...-...  -...+.|.+.+..++.|.|.+...........
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  431 (524)
T 2xut_A          352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY  431 (524)
T ss_dssp             GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555554    5554    34566677777777776644321100  01124455556666777777777777777888


Q ss_pred             hcCC-CCCCCeeEeeccccchhhHHHHHHHHHhcC
Q 014518          137 QNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA  170 (423)
Q Consensus       137 ~nFP-~~RG~vvgilk~~~GLSaaI~s~i~~~~f~  170 (423)
                      +.+| ++||++.|+.....++++++-..+.....+
T Consensus       432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8898 579999999999999999988887766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.31
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.23
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.83
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.76

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=8.8e-16  Score=150.89  Aligned_cols=150  Identities=14%  Similarity=0.162  Sum_probs=115.5

Q ss_pred             hhcCcchhHHHHHHHHhhcc-cccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHh
Q 014518           11 FFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL   88 (423)
Q Consensus        11 ~~~~Rw~~l~a~~~i~l~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~   88 (423)
                      ..+.||.+++.......+.. ....+++..|.++| +|+|.+|+..+..+..+|..+ .++.|.+.||+|+|.++.+|.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            34457888776655444433 33567888898876 899999999999988998866 7899999999999999999999


Q ss_pred             hhhhcceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC-CCCCCeeEeeccccchhhHHHHHH
Q 014518           89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV  164 (423)
Q Consensus        89 ~~~~Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP-~~RG~vvgilk~~~GLSaaI~s~i  164 (423)
                      +..++..+...+..-.   .+++.+.+..++.|.+.+....++.....++|| ++||.+.|+.-...++++.+-..+
T Consensus        98 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  171 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  171 (447)
T ss_dssp             HHHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhh
Confidence            8888777644332211   135566777778888888888889999999997 569999999888888887665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=3.9e-07  Score=85.44  Aligned_cols=180  Identities=12%  Similarity=0.095  Sum_probs=98.4

Q ss_pred             CcchhHHHHHHHHhhcccccccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhh
Q 014518           14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI   92 (423)
Q Consensus        14 ~Rw~~l~a~~~i~l~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~   92 (423)
                      +.|...+.-.+.....|..  ++.+...+++.+|+|.+|+..+..+..++..+ .++.|.+.||+|+|.+++++.+...+
T Consensus         8 ~~~~l~~~~f~~~~~~~~~--~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           8 NFWMFGLFFFFYFFIMGAY--FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3355544444444444432  34455568999999999999998888888866 78999999999999999998887777


Q ss_pred             cceeeeeeeeCCCCCchHHHHhhheeeecCCceeeehhhhhhhhhcCC---CCCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518           93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP---KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus        93 Gy~~~~l~~~g~i~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP---~~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                      +..++........   ..+...+...+.+.+.+....+.........+   ++|+...+......+.+..+-..+.....
T Consensus        86 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  162 (417)
T d1pv7a_          86 MFAPFFIFIFGPL---LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF  162 (417)
T ss_dssp             THHHHHHHTHHHH---HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhh---HHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc
Confidence            6655433222211   11112222233344444444444433333332   23455555555554444444333333333


Q ss_pred             CCCccceeeeeeechhhhhhhheeeEecc
Q 014518          170 APDHANLIFMVAVGPAMVVIALMFIIRPV  198 (423)
Q Consensus       170 ~~~~~~fllfla~~~~~v~~~~~~fvr~~  198 (423)
                      +.+....+...+....+..++...+.+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (417)
T d1pv7a_         163 TINNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred             cccccccccchhhHHHHHHHHHHHHhccc
Confidence            33333333333444444444444444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=3.8e-06  Score=80.75  Aligned_cols=134  Identities=13%  Similarity=-0.006  Sum_probs=81.2

Q ss_pred             cccccccch-hhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHH---HHHHHHhhhhhcceeeeeeeeCCC
Q 014518           31 IGYLFGSIS-PVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWG---ALLVGALQNFIGYGWVWLIVTGRA  105 (423)
Q Consensus        31 t~Y~Fs~yS-~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~---vl~iG~~~~~~Gy~~~~l~~~g~i  105 (423)
                      ..|.+..|. .-+++.++++..+...+.....++..+ .++.|++.||.+.+.   ...+.......+...+....    
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  339 (447)
T d1pw4a_         264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----  339 (447)
T ss_dssp             HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred             hhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcc----
Confidence            334444444 346778999999999877666666655 678999999987532   22222222222222211111    


Q ss_pred             CCchHHHHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccccchhhHHHHHHHHHhc
Q 014518          106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIH  169 (423)
Q Consensus       106 ~~~~~~~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~~GLSaaI~s~i~~~~f  169 (423)
                       ..+.|...+..++.|.+.............+.+|+ .||++.|+.-....+++++.+.+..++.
T Consensus       340 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~  403 (447)
T d1pw4a_         340 -AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  403 (447)
T ss_dssp             -TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12344444555555666665555556667788985 5899999887766677777766555543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=2.9e-06  Score=79.26  Aligned_cols=160  Identities=9%  Similarity=0.021  Sum_probs=103.6

Q ss_pred             cccccchhhhhhccCcchhHHHhhhhcccccccc-ccccchhhhhhhhHHHHHHHHhhhhhcceeeeeeeeCCCCCchHH
Q 014518           33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW  111 (423)
Q Consensus        33 Y~Fs~yS~~Lk~~l~~sq~~l~~i~~a~~vG~~~-g~~~G~l~D~~gP~~vl~iG~~~~~~Gy~~~~l~~~g~i~~~~~~  111 (423)
                      +.+..+.....+..+.+..+.........++..+ +++.|.+.||.|++.++.++.+...+++.++...       ++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  313 (417)
T d1pv7a_         241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSAL  313 (417)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------CCHH
T ss_pred             ccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------cccc
Confidence            3344444555555666666666655555555544 6789999999999999999999887777664321       2455


Q ss_pred             HHhhheeeecCCceeeehhhhhhhhhcCCC-CCCCeeEeeccc-cchhhHHHHHHHHHhcCC-Cccceeeeeeechhhhh
Q 014518          112 AMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGF-AGLGGAILTQVYTMIHAP-DHANLIFMVAVGPAMVV  188 (423)
Q Consensus       112 ~l~~f~~l~g~g~~~~~ta~l~t~~~nFP~-~RG~vvgilk~~-~GLSaaI~s~i~~~~f~~-~~~~fllfla~~~~~v~  188 (423)
                      .+.+..++.|.+.+..+........+.+|+ .||++.|+.-+. .++++++-..+.-...+. ....-++..+....+..
T Consensus       314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~  393 (417)
T d1pv7a_         314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT  393 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            666677777888888888888888899985 699999986543 345555444333222211 12223344555566666


Q ss_pred             hhheeeEeccC
Q 014518          189 IALMFIIRPVG  199 (423)
Q Consensus       189 ~~~~~fvr~~~  199 (423)
                      ++..+++|.+.
T Consensus       394 ~~~~~~l~~~~  404 (417)
T d1pv7a_         394 LISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHSCCSS
T ss_pred             HHHHHhhcCCC
Confidence            66777777543