Citrus Sinensis ID: 014549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREVSISAWILI
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccEEEEEEEcccccccHHHHHHHHHHcccEEEEEEEcccccHHHHHHHcccccccEEEEEcccccccEEEcccccHHHHHHHHHHcccccccccccccHHHHcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHccccccccEEEEccccEEEEEcccccccccEEEEcccccHHHHHHHHHHHccccccEEEEEccccHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHccEEEEEEEcccHHHHHHHHHcccccccEEEEEcccccccEEEcccccHHHHHHHHHHcccccccccccHHHHHHcccccccccccccEEEEEEEEEEccccccHcHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAGPTMISKVKAYWAPLILFGLGLFYQlvvlprsfppshydalgikpyssVEQVKEAYEKFSSkwnsgeeipstaDFLKIQYAYELLTdplwkrnydvygidEQLHILEKVREQygeesysridlplldatdhsvhafnvvtsedfpsifhdskpwliqvysdgsylcgqfSGAWKTIAALLEGIANTGMVELGDIRLATHlaerkpigqiffrrglpslvafppgckssdcmtrfegelSVDAVTDWFATAILKLPRIFyytkesmgknflaktgphKVKVIFFSktgeraspFVRQISRNYWAYASFAFVLWREEESSIWWNtfevesapaivflkdpgvkpvvyygsfnnsrlSEVMEQNKlqelpqlrsvtsmelgcdargysragsdttIWYCVILAgrlspelnkMREVSISAWILI
Flexible Loop (DISEMBL)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSskwnsgeeIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKnflaktgpHKVKVIFFsktgeraspfVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARgysragsdttIWYCVILAgrlspelnkmrevsisawili
Low Complexity Region (SEG)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREVSISAWILI
Disordered region (IsUnstruct)
******ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS**********************MELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREVSISAWIL*
Disordered Region (DISOPRED)
************YWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDE***************SYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRS**************RAGSDTTIWYCVILAGRLSPELNKMREVSISAWILI
Disordered Region (DISEMBL)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREVSISAWILI
Disordered Region (DISPRO)
****TMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREVSISAWILI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREVSISAWILI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q498R3	793	DnaJ homolog subfamily C	yes	no	0.408	0.218	0.252	5e-11
Q9DC23	793	DnaJ homolog subfamily C	yes	no	0.408	0.218	0.252	5e-11
Q8IXB1	793	DnaJ homolog subfamily C	yes	no	0.401	0.214	0.251	1e-10
Q5R5L3	793	DnaJ homolog subfamily C	yes	no	0.401	0.214	0.245	4e-10
Q6NRT6	796	DnaJ homolog subfamily C	N/A	no	0.352	0.187	0.269	5e-10
Q5FVM7	771	DnaJ homolog subfamily C	no	no	0.801	0.439	0.245	3e-09
Q80TN4	772	DnaJ homolog subfamily C	no	no	0.373	0.204	0.291	6e-09
Q5RCM7	782	DnaJ homolog subfamily C	no	no	0.865	0.468	0.241	8e-08
Q5ZKZ4	777	DnaJ homolog subfamily C	no	no	0.373	0.203	0.271	2e-07
Q9Y2G8	782	DnaJ homolog subfamily C	no	no	0.439	0.237	0.272	4e-07

>sp|Q498R3|DJC10_RAT DnaJ homolog subfamily C member 10 OS=Rattus norvegicus GN=Dnajc10 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGLPSL 220
            G+ ++
Sbjct: 209 SGMAAV 214

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May be involved in disulfide formation. May act as a co-chaperone for Hspa5.
Rattus norvegicus (taxid: 10116)

>sp|Q9DC23|DJC10_MOUSE DnaJ homolog subfamily C member 10 OS=Mus musculus GN=Dnajc10 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGLPSL 220
            G+ ++
Sbjct: 209 SGMAAV 214

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May be involved in disulfide formation. May act as a co-chaperone for Hspa5.

Mus musculus (taxid: 10090)

>sp|Q8IXB1|DJC10_HUMAN DnaJ homolog subfamily C member 10 OS=Homo sapiens GN=DNAJC10 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   +Y R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGL 217
            G+
Sbjct: 209 SGM 211

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May act as a co-chaperone for HSPA5.

Homo sapiens (taxid: 9606)

>sp|Q5R5L3|DJC10_PONAB DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      +FLKI  AYE+L D   ++ 
Sbjct: 37  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGNFLKINRAYEVLKDEDLRKK 95

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   +Y R D  + D     +     +   +F +  +  + 
Sbjct: 96  YDKYG---EKGLEDNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 148

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 149 WFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 208

Query: 215 RGL 217
            G+
Sbjct: 209 SGM 211

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane. May be involved in disulfide formation. May act as a co-chaperone for HSPA5.

Pongo abelii (taxid: 9601)

>sp|Q6NRT6|DJC10_XENLA DnaJ homolog subfamily C member 10 OS=Xenopus laevis GN=dnajc10 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +YD LG+   ++  ++++A++K + K   +  ++  +   FLKI  AYE+L D   ++ Y
Sbjct: 37  YYDLLGVSKAATNREIRQAFKKLALKLHPDKNKDPDAHNKFLKINRAYEVLKDEDLRKKY 96

Query: 97  DVYG---IDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSE--DFPSIFH 151
           D YG   +DEQ          Y   SY R D  + D          ++T +  +F    +
Sbjct: 97  DKYGEKGLDEQ-----NQGGGYQSWSYYRYDFGIYDDD------LEIITLDRGEFDGAVN 145

Query: 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL 198
             + W I  YS G   C   +  W+  A  ++G+   G V  GD R+
Sbjct: 146 SGELWFINFYSPGCSHCHDLAPTWRQFAKEMDGLLRIGAVNCGDNRM 192

This endoplasmic reticulum co-chaperone may play a role in protein folding and translocation across the endoplasmic reticulum membrane.

Xenopus laevis (taxid: 8355)

>sp|Q5FVM7|DJC16_RAT DnaJ homolog subfamily C member 16 OS=Rattus norvegicus GN=Dnajc16 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 158/399 (39%), Gaps = 60/399 (15%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYD 97
           Y  LG+   +S   +K+AY+K + +W+    + P   D F++I  AYE+L++   + NYD
Sbjct: 31  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRTNYD 90

Query: 98  VYGIDEQLHILEKVRE----QYGEESY---SRIDLPL----LDATD-----HSVHAFNVV 141
            YG   +    ++ RE     + E  Y   S    P      D+ D     H  H  N V
Sbjct: 91  HYGDAGENQGYQQQREYRFRHFHENFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEV 150

Query: 142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLA 199
             + F       KP+LI++ SD  + C      WK +   LEG+    G+V  G + RLA
Sbjct: 151 VPDSF------KKPYLIKITSDWCFSCIHIEPIWKEVVQELEGLGVGIGVVHAGYERRLA 204

Query: 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRI 259
            HL               PS++    G  S      F     V      F  ++L    +
Sbjct: 205 HHLGA----------HSTPSILGIINGKIS------FFHNAVVHENLRQFVESLLPGNLV 248

Query: 260 FYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISR-NYWAYASFAFV---LWR 315
              T ++  +        +K   + F +T   A+P + +++   Y  Y SF +V   L  
Sbjct: 249 EKVTNKNYVRFLSGWQQENKPHALLFGQTP--AAPLLYKLTAFAYKDYVSFGYVYVGLRG 306

Query: 316 EEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSFNNSRLSEVMEQNKLQELPQLRS 373
            EE +  +N      AP ++  K+   KP   +         + + + QNK     +L S
Sbjct: 307 VEEMTRQYNVNIY--APTMLIFKEHINKPADAIQARGLKKQVIEDFITQNKYLLASRLTS 364

Query: 374 VTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKM 412
                  C  +   R        YCV+L   L+ E NK+
Sbjct: 365 QKLFHELCPVKRSHRQRK-----YCVVL---LTAEANKL 395

Rattus norvegicus (taxid: 10116)

>sp|Q80TN4|DJC16_MOUSE DnaJ homolog subfamily C member 16 OS=Mus musculus GN=Dnajc16 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 27/185 (14%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYD 97
           Y  LG+   +S   +K+AY+K + +W+    + P   D F++I  AYE+L++   + NYD
Sbjct: 31  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 90

Query: 98  VYG---------IDEQLHILEKVREQ-YGEESYSRI--DLPLLDATD-----HSVHAFNV 140
            YG           ++ H      E  Y +ES+     +    D+ D     H  H  N 
Sbjct: 91  HYGDAGENQGYQKQQREHRFRHFHENFYFDESFFHFPFNAERRDSGDEKYLLHFSHYVNE 150

Query: 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRL 198
           V  E F       +P+LI++ SD  + C      WK +   LEG+    G+V  G + RL
Sbjct: 151 VLPESF------KRPYLIKITSDWCFSCIHIEPVWKEVVQELEGLGVGIGVVHAGYERRL 204

Query: 199 ATHLA 203
           A HL 
Sbjct: 205 AHHLG 209

Mus musculus (taxid: 10090)

>sp|Q5RCM7|DJC16_PONAB DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 178/451 (39%), Gaps = 85/451 (18%)

Query: 7   ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN 66
           + K+   W  LI+  L L    ++    F P  Y  LG+   +S   +K+AY+K + +W+
Sbjct: 3   VRKLSISWQFLIVLVLIL---QILSALDFDP--YKVLGVSRTASQADIKKAYKKLAREWH 57

Query: 67  -SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYDVYG------IDEQLHILEKVREQYGEE 118
               + P   D F++I  AYE+L++   + NYD YG        ++     + R ++  E
Sbjct: 58  PDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHE 117

Query: 119 SY----SRIDLPL----LDATD-----HSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGS 165
           ++    S    P      D+ D     H  H  N V  + F       KP+LI++ SD  
Sbjct: 118 NFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSF------KKPYLIKITSDWC 171

Query: 166 YLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLATHL-AERKP--IGQI-----FFRR 215
           + C      WK +   LE +    G+V  G + RLA HL A   P  +G I     FFR 
Sbjct: 172 FSCIHIEPVWKEVVQELEELGVGIGVVHAGYERRLAHHLGAHSTPSILGIINGKISFFRN 231

Query: 216 GL--PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLA 273
            +   +L  F       + + +  G+  V  ++ W                         
Sbjct: 232 AVVRENLRQFVESLLPGNLVEKVTGKNYVRFLSGW-----------------------QQ 268

Query: 274 KTGPHKVKVIFFSKTGERASPFVRQISR-NYWAYASFAFV---LWREEESSIWWNTFEVE 329
           +  PH   V+ F +T     P + +++   Y  Y SF +V   L   EE +  +N     
Sbjct: 269 ENKPH---VLLFDQTP--IVPLLYKLTAFAYKDYLSFGYVYVGLRGTEEMTRRYNINIY- 322

Query: 330 SAPAIVFLKDPGVKP--VVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYS 387
            AP ++  K+   KP  V+         + + + QNK     +L S       C  R   
Sbjct: 323 -APTLLVFKEHINKPADVIQARGMKKQIIDDFITQNKHLLAARLTSQKLFHELCPVRRSH 381

Query: 388 RAGSDTTIWYCVILAGRLSPELNKMREVSIS 418
           R        YCV+L    + +L+K  E  +S
Sbjct: 382 RQRK-----YCVVLLTAETTKLSKPFEAFLS 407

Pongo abelii (taxid: 9601)

>sp|Q5ZKZ4|DJC16_CHICK DnaJ homolog subfamily C member 16 OS=Gallus gallus GN=DNAJC16 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 26/184 (14%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYD 97
           Y  LG+   SS   +K+AY++ + +W+    + P   D F++I  AYE+L++   + N+D
Sbjct: 30  YRVLGVGRSSSQADIKKAYKRLARQWHPDKNKDPGAEDKFIQISKAYEILSNEEKRANFD 89

Query: 98  VYGIDEQLHILEKVREQ---------YGEESYSRI--DLPLLDATD-----HSVHAFNVV 141
            YG   +     + +++         Y +ES+     +    D +D     H  H  N +
Sbjct: 90  RYGDAGESQGYSQHQQRQFHHFHEGFYFDESFFHFPFNSERRDTSDEKYLLHFSHYINEI 149

Query: 142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLA 199
             + F       KP+LI++ SD  + C      WK +A  LE +    G+V  G + RLA
Sbjct: 150 VPDSF------KKPYLIKITSDWCFSCIHIEPVWKEVAQELEALGVGIGVVHAGYERRLA 203

Query: 200 THLA 203
            HL 
Sbjct: 204 HHLG 207

Gallus gallus (taxid: 9031)

>sp|Q9Y2G8|DJC16_HUMAN DnaJ homolog subfamily C member 16 OS=Homo sapiens GN=DNAJC16 PE=2 SV=3

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 34/220 (15%)

Query: 7   ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN 66
           + K+   W  LI+  L L    ++    F P  Y  LG+   +S   +K+AY+K + +W+
Sbjct: 3   VRKLSISWQFLIVLVLIL---QILSALDFDP--YRVLGVSRTASQADIKKAYKKLAREWH 57

Query: 67  -SGEEIPSTAD-FLKIQYAYELLTDPLWKRNYDVYG------IDEQLHILEKVREQYGEE 118
               + P   D F++I  AYE+L++   + NYD YG        ++     + R ++  E
Sbjct: 58  PDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHE 117

Query: 119 SY----SRIDLPL----LDATD-----HSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGS 165
           ++    S    P      D+ D     H  H  N V  + F       KP+LI++ SD  
Sbjct: 118 NFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSF------KKPYLIKITSDWC 171

Query: 166 YLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLATHLA 203
           + C      WK +   LE +    G+V  G + RLA HL 
Sbjct: 172 FSCIHIEPVWKEVIQELEELGVGIGVVHAGYERRLAHHLG 211

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
255547351	682	heat shock protein binding protein, puta	0.971	0.602	0.709	1e-174
359491697	685	PREDICTED: uncharacterized protein LOC10	0.969	0.598	0.701	1e-172
297733956	698	unnamed protein product [Vitis vinifera]	0.959	0.581	0.703	1e-171
224127416	695	predicted protein [Populus trichocarpa]	0.978	0.595	0.685	1e-171
449440808	704	PREDICTED: uncharacterized protein LOC10	0.981	0.589	0.633	1e-154
79318136	705	DNAJ heat shock N-terminal domain-contai	0.978	0.587	0.605	1e-154
22329659	700	DNAJ heat shock N-terminal domain-contai	0.978	0.591	0.605	1e-154
297844826	703	DNAJ heat shock N-terminal domain-contai	0.959	0.577	0.613	1e-152
334182674	715	DNAJ heat shock N-terminal domain-contai	0.978	0.579	0.584	1e-151
356519070	683	PREDICTED: uncharacterized protein LOC10	0.940	0.582	0.613	1e-146

>gi|255547351|ref|XP_002514733.1| heat shock protein binding protein, putative [Ricinus communis] gi|223546337|gb|EEF47839.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 293/413 (70%), Positives = 348/413 (84%), Gaps = 2/413 (0%)

Query: 5   TMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSK 64
           T+ S VKAY  P  LF L +FYQLVVLPRSFP SHYD L IK YSS+E+V+ AYEK SSK
Sbjct: 3   TIPSAVKAYAVPFFLFALSIFYQLVVLPRSFPLSHYDVLRIKRYSSIEEVENAYEKLSSK 62

Query: 65  WNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRID 124
           WN+G+++P+  DFL+IQYAYELL +PLWKR+YD++ IDEQLH+L+K +E Y  ES+S+I 
Sbjct: 63  WNAGDKVPTAVDFLEIQYAYELLKNPLWKRDYDLFNIDEQLHMLDKFKELYAGESFSQIG 122

Query: 125 LPLLDAT--DHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL 182
           LPLLDA   D   H  N +T+EDF SIF DSKPWLIQVYS GS    QFS +WK IA  L
Sbjct: 123 LPLLDAKSFDPPDHTLNSITTEDFWSIFSDSKPWLIQVYSLGSSRSAQFSNSWKKIAYSL 182

Query: 183 EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSV 242
           +G+ANTG VELG+++LA  LAE+KP G IFFR GLPSLVAFPPGCK  +C+ R+EG+LSV
Sbjct: 183 DGVANTGAVELGEVQLAISLAEKKPTGGIFFRNGLPSLVAFPPGCKILECLMRYEGDLSV 242

Query: 243 DAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRN 302
           DAVT+WFATA+L LPRI Y++K+S+GK+FLAK+GPHKVKVIFFSKTG RA+PF+ QI+++
Sbjct: 243 DAVTNWFATAVLSLPRILYHSKDSLGKHFLAKSGPHKVKVIFFSKTGVRATPFLCQIAKD 302

Query: 303 YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362
           YW YASFA VLWREE+ S+WWNTFEVESAPAIVFLKDPGVKPVV++GSFNNS  S+VME+
Sbjct: 303 YWDYASFALVLWREEDFSLWWNTFEVESAPAIVFLKDPGVKPVVFHGSFNNSWFSDVMEK 362

Query: 363 NKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           NKLQELPQLRSVTSMELGCDARG+SRAG+DT  WYCVI+AGRL PELNKMRE 
Sbjct: 363 NKLQELPQLRSVTSMELGCDARGHSRAGNDTVSWYCVIVAGRLGPELNKMRET 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491697|ref|XP_002281830.2| PREDICTED: uncharacterized protein LOC100244920 [Vitis vinifera]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/412 (70%), Positives = 340/412 (82%), Gaps = 2/412 (0%)

Query: 6   MISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKW 65
           M S +KAY  PL+L    +F QL V+P SFP +HYD LGIK YS+VE+V EAYEKFSSKW
Sbjct: 1   MASTLKAYSIPLVLLAAAIFLQLFVIPNSFPLNHYDVLGIKRYSTVEEVAEAYEKFSSKW 60

Query: 66  NSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDL 125
           NSG E+P T DFLKI+YA+ELLTDPLWKR+YD++GIDEQ+ + E V++Q+   S+S I+L
Sbjct: 61  NSGTEVPETIDFLKIRYAFELLTDPLWKRDYDIFGIDEQIDVFENVKKQFSGVSFSGINL 120

Query: 126 PLLDA--TDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE 183
           PLL A  +D   H FNV+TS DF S+   ++P LIQ+YS GS  C QFS  WK IA  LE
Sbjct: 121 PLLSAASSDPGDHVFNVITSNDFHSVLEKTEPLLIQIYSLGSNSCRQFSNDWKRIATFLE 180

Query: 184 GIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVD 243
           G+ANTGMVELGD RLA +LAE+KP GQ FFR GLPSLVAFP GC++SDC+ R+EGELSVD
Sbjct: 181 GVANTGMVELGDARLAAYLAEKKPTGQPFFRNGLPSLVAFPSGCRTSDCLVRYEGELSVD 240

Query: 244 AVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNY 303
           AVTDWFATAIL LPRI YY+KES+G+ FLAK+ P KVKVI FS+TG+RA+PF+RQ ++NY
Sbjct: 241 AVTDWFATAILTLPRISYYSKESLGQAFLAKSSPWKVKVIVFSRTGQRATPFLRQAAKNY 300

Query: 304 WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363
           WA+ASFAFVLW+EE+SS+WWNTFEVESAPAIVFLKDPGVKPVV++G FNNS    +MEQN
Sbjct: 301 WAHASFAFVLWQEEDSSVWWNTFEVESAPAIVFLKDPGVKPVVHHGFFNNSWFVNIMEQN 360

Query: 364 KLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           K QELPQLRS+TSMELGCDARGYSRAG DT  WYCVILAGRLS ELNKMRE 
Sbjct: 361 KQQELPQLRSITSMELGCDARGYSRAGYDTMTWYCVILAGRLSLELNKMRET 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733956|emb|CBI15203.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/408 (70%), Positives = 338/408 (82%), Gaps = 2/408 (0%)

Query: 10  VKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGE 69
           +KAY  PL+L    +F QL V+P SFP +HYD LGIK YS+VE+V EAYEKFSSKWNSG 
Sbjct: 18  LKAYSIPLVLLAAAIFLQLFVIPNSFPLNHYDVLGIKRYSTVEEVAEAYEKFSSKWNSGT 77

Query: 70  EIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLD 129
           E+P T DFLKI+YA+ELLTDPLWKR+YD++GIDEQ+ + E V++Q+   S+S I+LPLL 
Sbjct: 78  EVPETIDFLKIRYAFELLTDPLWKRDYDIFGIDEQIDVFENVKKQFSGVSFSGINLPLLS 137

Query: 130 A--TDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIAN 187
           A  +D   H FNV+TS DF S+   ++P LIQ+YS GS  C QFS  WK IA  LEG+AN
Sbjct: 138 AASSDPGDHVFNVITSNDFHSVLEKTEPLLIQIYSLGSNSCRQFSNDWKRIATFLEGVAN 197

Query: 188 TGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247
           TGMVELGD RLA +LAE+KP GQ FFR GLPSLVAFP GC++SDC+ R+EGELSVDAVTD
Sbjct: 198 TGMVELGDARLAAYLAEKKPTGQPFFRNGLPSLVAFPSGCRTSDCLVRYEGELSVDAVTD 257

Query: 248 WFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYA 307
           WFATAIL LPRI YY+KES+G+ FLAK+ P KVKVI FS+TG+RA+PF+RQ ++NYWA+A
Sbjct: 258 WFATAILTLPRISYYSKESLGQAFLAKSSPWKVKVIVFSRTGQRATPFLRQAAKNYWAHA 317

Query: 308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQE 367
           SFAFVLW+EE+SS+WWNTFEVESAPAIVFLKDPGVKPVV++G FNNS    +MEQNK QE
Sbjct: 318 SFAFVLWQEEDSSVWWNTFEVESAPAIVFLKDPGVKPVVHHGFFNNSWFVNIMEQNKQQE 377

Query: 368 LPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           LPQLRS+TSMELGCDARGYSRAG DT  WYCVILAGRLS ELNKMRE 
Sbjct: 378 LPQLRSITSMELGCDARGYSRAGYDTMTWYCVILAGRLSLELNKMRET 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127416|ref|XP_002329272.1| predicted protein [Populus trichocarpa] gi|222870726|gb|EEF07857.1| predicted protein [Populus trichocarpa]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/416 (68%), Positives = 339/416 (81%), Gaps = 2/416 (0%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKF 61
           A  +M SK+KAY  PL LF L +FYQLVVLPRSFP SHYD LGIK YSSVE+VKEAY+K 
Sbjct: 1   AMSSMASKIKAYSVPLFLFSLSVFYQLVVLPRSFPASHYDVLGIKRYSSVEEVKEAYDKL 60

Query: 62  SSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYS 121
           SSKWNS   IP+T+DF+KIQYAYELLT+PLWKR+YD++GIDEQ HI++K+  Q+  ES S
Sbjct: 61  SSKWNSEAGIPATSDFIKIQYAYELLTNPLWKRDYDIFGIDEQAHIMDKINLQHAGESIS 120

Query: 122 RIDLPLLDAT--DHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA 179
            IDLPLL+AT  D   H FN  TS++F  +F  SKPWL+ VYS GS  C QF  +W  I 
Sbjct: 121 GIDLPLLEATTFDLGFHTFNEFTSQEFAPMFDSSKPWLVLVYSLGSKKCAQFFSSWIDIT 180

Query: 180 ALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE 239
            LL+G+A  G++ELG+++LA  LAERKP G+ FFR GLPSLVAFP GCK+S C+ RFEG+
Sbjct: 181 GLLDGVAGVGILELGELQLAISLAERKPTGKFFFRNGLPSLVAFPSGCKASACLVRFEGD 240

Query: 240 LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQI 299
           LS DAV DWFAT +L LPRI YY+KES+G+NFLAK+GPHKVKVIFFSKTG RA+PFVRQ 
Sbjct: 241 LSTDAVIDWFATKVLGLPRILYYSKESLGQNFLAKSGPHKVKVIFFSKTGARATPFVRQT 300

Query: 300 SRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359
           +++YWAY SFAFVLWREE+ S+WWN FEVESAPAIVF+KD GVKPVV +G  NNS   ++
Sbjct: 301 AKSYWAYTSFAFVLWREEDFSVWWNAFEVESAPAIVFVKDSGVKPVVVHGMVNNSEFLDL 360

Query: 360 MEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           +E+NK QELPQLRS TSMELGCDARG+SRAG+DT  WYCVILAGRL PELNK+RE+
Sbjct: 361 VEKNKQQELPQLRSATSMELGCDARGHSRAGNDTISWYCVILAGRLGPELNKLREI 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440808|ref|XP_004138176.1| PREDICTED: uncharacterized protein LOC101203381 [Cucumis sativus] gi|449477213|ref|XP_004154962.1| PREDICTED: uncharacterized protein LOC101225277 [Cucumis sativus]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/417 (63%), Positives = 316/417 (75%), Gaps = 2/417 (0%)

Query: 1   MAGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEK 60
           M   +M S +KAY  PLILF L +FY LVV+P SFP SHYD LGIK YSSV++VKEAYEK
Sbjct: 11  MPTSSMASTIKAYSVPLILFSLAVFYHLVVIPASFPTSHYDVLGIKRYSSVDEVKEAYEK 70

Query: 61  FSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESY 120
            S+KW SG EI    DF+KIQYAYELL + LWKR+YD++G DEQ  +LEK + QY  +  
Sbjct: 71  LSNKWESGGEISEAVDFVKIQYAYELLKNNLWKRDYDLFGFDEQRGVLEKAKVQYAGKKI 130

Query: 121 SRIDLPLLD--ATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTI 178
           S I LPLLD  A +    + N + S D  S+F+D KP LI +YS GS LC +FS  WK I
Sbjct: 131 SEISLPLLDEVALNTEDRSLNFIRSNDVQSMFNDDKPSLIMLYSFGSKLCVRFSDVWKQI 190

Query: 179 AALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG 238
            ALL+G+ANT +VELG+ +LA +LAE+KP GQ FFR GLPS VAF PGCKS+DC+ RF G
Sbjct: 191 VALLDGVANTAVVELGEAQLAAYLAEKKPTGQPFFRNGLPSFVAFSPGCKSTDCINRFNG 250

Query: 239 ELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQ 298
           +LS D +TDWFAT+IL LPRI YY+KE++G  FLAK+ PHKVKVI FS+TGERA+PF+RQ
Sbjct: 251 KLSFDDITDWFATSILYLPRILYYSKETLGPKFLAKSSPHKVKVIIFSETGERAAPFIRQ 310

Query: 299 ISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358
            ++N W   SFA VLWREEESSIW + F VE APA+VFLKDPG+KP+VY+GS N S   +
Sbjct: 311 TAKNNWDSVSFALVLWREEESSIWLDAFGVELAPAMVFLKDPGMKPIVYHGSVNRSSFVQ 370

Query: 359 VMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           ++EQNK  ELPQLRS TSMELGCD  GYSRAGSDT  WYC I+AGRL  ELNKMRE 
Sbjct: 371 LIEQNKQHELPQLRSRTSMELGCDPHGYSRAGSDTLTWYCAIVAGRLGAELNKMRET 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79318136|ref|NP_001031065.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|332191627|gb|AEE29748.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/416 (60%), Positives = 321/416 (77%), Gaps = 2/416 (0%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKF 61
           A  +M S +KAY  P+ LF L +F+QL +LPRSFPPSHYD LG+K YSSV+ VK+AY+  
Sbjct: 7   ASSSMPSGLKAYTVPIFLFVLAMFFQLFLLPRSFPPSHYDVLGVKMYSSVDDVKDAYQTV 66

Query: 62  SSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYS 121
           +SKW+SG  +   ADF+KIQYAYELLT+ +WKR+YD+Y IDE +HI+E++ +QY  E ++
Sbjct: 67  ASKWDSGSGVSLPADFVKIQYAYELLTNLVWKRDYDLYAIDESVHIIEELEKQYAVEDFA 126

Query: 122 RIDLPLLDATDHS--VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA 179
           +I LPLL+   +      F  +TS+DF S F DSKPWLIQVYS GS    QF+  W+ I 
Sbjct: 127 KIKLPLLEVVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSGSNSSAQFATVWRRIV 186

Query: 180 ALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE 239
           ALL+G+AN  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FPP CK++DC+ RFEGE
Sbjct: 187 ALLDGVANHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFPPNCKTADCLIRFEGE 246

Query: 240 LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQI 299
           LS DA+TDWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI FS+TGERA+P VRQ 
Sbjct: 247 LSADAITDWFATTVLGLPRVFYHTKETLVSKFLSKVPPNKVKVILFSQTGERATPIVRQA 306

Query: 300 SRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359
           +++YW +AS + VLWREE++S WWN  EVESAPAIV +KDPG KPVVY+GS N +   ++
Sbjct: 307 AKDYWNFASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKPVVYHGSGNRTWFLDI 366

Query: 360 MEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           +EQNK   LPQLRS TSMELGCDARGYSRAG D   WYC IL GR S ELNKMRE 
Sbjct: 367 LEQNKQLLLPQLRSTTSMELGCDARGYSRAGYDKVTWYCAILVGRQSVELNKMRET 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329659|ref|NP_173305.2| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|17979007|gb|AAL47463.1| At1g18700/F6A14_19 [Arabidopsis thaliana] gi|23506111|gb|AAN28915.1| At1g18700/F6A14_19 [Arabidopsis thaliana] gi|332191626|gb|AEE29747.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/416 (60%), Positives = 321/416 (77%), Gaps = 2/416 (0%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKF 61
           A  +M S +KAY  P+ LF L +F+QL +LPRSFPPSHYD LG+K YSSV+ VK+AY+  
Sbjct: 7   ASSSMPSGLKAYTVPIFLFVLAMFFQLFLLPRSFPPSHYDVLGVKMYSSVDDVKDAYQTV 66

Query: 62  SSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYS 121
           +SKW+SG  +   ADF+KIQYAYELLT+ +WKR+YD+Y IDE +HI+E++ +QY  E ++
Sbjct: 67  ASKWDSGSGVSLPADFVKIQYAYELLTNLVWKRDYDLYAIDESVHIIEELEKQYAVEDFA 126

Query: 122 RIDLPLLDATDHS--VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA 179
           +I LPLL+   +      F  +TS+DF S F DSKPWLIQVYS GS    QF+  W+ I 
Sbjct: 127 KIKLPLLEVVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSGSNSSAQFATVWRRIV 186

Query: 180 ALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE 239
           ALL+G+AN  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FPP CK++DC+ RFEGE
Sbjct: 187 ALLDGVANHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFPPNCKTADCLIRFEGE 246

Query: 240 LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQI 299
           LS DA+TDWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI FS+TGERA+P VRQ 
Sbjct: 247 LSADAITDWFATTVLGLPRVFYHTKETLVSKFLSKVPPNKVKVILFSQTGERATPIVRQA 306

Query: 300 SRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEV 359
           +++YW +AS + VLWREE++S WWN  EVESAPAIV +KDPG KPVVY+GS N +   ++
Sbjct: 307 AKDYWNFASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKPVVYHGSGNRTWFLDI 366

Query: 360 MEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           +EQNK   LPQLRS TSMELGCDARGYSRAG D   WYC IL GR S ELNKMRE 
Sbjct: 367 LEQNKQLLLPQLRSTTSMELGCDARGYSRAGYDKVTWYCAILVGRQSVELNKMRET 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844826|ref|XP_002890294.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336136|gb|EFH66553.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/409 (61%), Positives = 319/409 (77%), Gaps = 3/409 (0%)

Query: 10  VKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGE 69
           +KAY  P+ LF L +F+QL +LPRSFPPSHYD LG+K YSSV+ VK+AYE  +SKW+SG 
Sbjct: 17  LKAYAVPIFLFVLAMFFQLFLLPRSFPPSHYDVLGVKMYSSVDDVKDAYETIASKWDSGS 76

Query: 70  EIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLD 129
                ADF+KIQYAYELLT+ +WKR+YD++GIDE +HI+E++ +QY  E +++I LPLL+
Sbjct: 77  GDSLPADFIKIQYAYELLTNLVWKRDYDLFGIDESVHIIEELEKQYAVEDFAKIKLPLLE 136

Query: 130 ATDHS--VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA-ALLEGIA 186
              +      F  +TS+DF S F DSKPWLIQVYS GS     F+ AW+ IA ALL+G+A
Sbjct: 137 VVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSGSKSSAHFTTAWRRIAVALLDGVA 196

Query: 187 NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246
           N  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FPP CK++DC+ RFEGELS DA+T
Sbjct: 197 NHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFPPNCKTADCLIRFEGELSADAIT 256

Query: 247 DWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAY 306
           DWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI FS+TGERA+P VRQ +++YW +
Sbjct: 257 DWFATTVLGLPRVFYHTKETLVPKFLSKVPPNKVKVILFSQTGERATPIVRQAAKDYWNF 316

Query: 307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ 366
           AS + VLWREE++S WWN  EVESAPAIV +KDPG KPVVY+GS N +   +++EQNK  
Sbjct: 317 ASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKPVVYHGSGNRTWFLDILEQNKQL 376

Query: 367 ELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
           +LPQLRS TSMELGCDARGYSRAG D   WYC IL GR S ELNKMRE 
Sbjct: 377 QLPQLRSTTSMELGCDARGYSRAGYDKATWYCAILVGRQSVELNKMRET 425

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182674|ref|NP_001185029.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|332191629|gb|AEE29750.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 252/431 (58%), Positives = 321/431 (74%), Gaps = 17/431 (3%)

Query: 2   AGPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDA---------------LGIK 46
           A  +M S +KAY  P+ LF L +F+QL +LPRSFPPSHYD                LG+K
Sbjct: 7   ASSSMPSGLKAYTVPIFLFVLAMFFQLFLLPRSFPPSHYDGTQFSKLAFSLDYFLVLGVK 66

Query: 47  PYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLH 106
            YSSV+ VK+AY+  +SKW+SG  +   ADF+KIQYAYELLT+ +WKR+YD+Y IDE +H
Sbjct: 67  MYSSVDDVKDAYQTVASKWDSGSGVSLPADFVKIQYAYELLTNLVWKRDYDLYAIDESVH 126

Query: 107 ILEKVREQYGEESYSRIDLPLLDATDHS--VHAFNVVTSEDFPSIFHDSKPWLIQVYSDG 164
           I+E++ +QY  E +++I LPLL+   +      F  +TS+DF S F DSKPWLIQVYS G
Sbjct: 127 IIEELEKQYAVEDFAKIKLPLLEVVSYEPEREGFMSITSQDFASKFQDSKPWLIQVYSSG 186

Query: 165 SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224
           S    QF+  W+ I ALL+G+AN  M+ELGD++L T+LAE+KP GQ+FFR+GLPS+ +FP
Sbjct: 187 SNSSAQFATVWRRIVALLDGVANHAMLELGDVQLVTYLAEKKPTGQVFFRKGLPSIFSFP 246

Query: 225 PGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIF 284
           P CK++DC+ RFEGELS DA+TDWFAT +L LPR+FY+TKE++   FL+K  P+KVKVI 
Sbjct: 247 PNCKTADCLIRFEGELSADAITDWFATTVLGLPRVFYHTKETLVSKFLSKVPPNKVKVIL 306

Query: 285 FSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP 344
           FS+TGERA+P VRQ +++YW +AS + VLWREE++S WWN  EVESAPAIV +KDPG KP
Sbjct: 307 FSQTGERATPIVRQAAKDYWNFASLSHVLWREEDASFWWNALEVESAPAIVIMKDPGSKP 366

Query: 345 VVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR 404
           VVY+GS N +   +++EQNK   LPQLRS TSMELGCDARGYSRAG D   WYC IL GR
Sbjct: 367 VVYHGSGNRTWFLDILEQNKQLLLPQLRSTTSMELGCDARGYSRAGYDKVTWYCAILVGR 426

Query: 405 LSPELNKMREV 415
            S ELNKMRE 
Sbjct: 427 QSVELNKMRET 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519070|ref|XP_003528197.1| PREDICTED: uncharacterized protein LOC100820244 [Glycine max]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/411 (61%), Positives = 309/411 (75%), Gaps = 13/411 (3%)

Query: 6   MISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKW 65
           M S V+AY  P++LF   +FYQL ++P +FPPSHYD L I+ YSSVE+VKEAY+K  SKW
Sbjct: 1   MASIVRAYTLPILLFAGAMFYQLFLIPNAFPPSHYDVLQIESYSSVEKVKEAYDKLESKW 60

Query: 66  NSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDL 125
           NS  E+    +FLKI+YAYELLT+PLWKR+YD++GIDEQLHI+E   ++Y  +  S +D 
Sbjct: 61  NSAVEVFDIHEFLKIRYAYELLTNPLWKRDYDIFGIDEQLHIVESASKRYAGKHISELDF 120

Query: 126 PLLDATDHSV-HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG 184
           PLL A   S+ H+  V+T+ DF  IF D+KPWLIQ+YS GS  C QFS +W  IA+LL+ 
Sbjct: 121 PLLQAPSGSIDHSSKVITASDFQYIFPDAKPWLIQLYSSGSERCAQFSKSWNKIASLLDV 180

Query: 185 IANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDA 244
            AN GMVELG+  LA +LA+R+  G+ FFR G+PSLVA P GC+SS C+ RF+GEL+VD 
Sbjct: 181 FANIGMVELGEKELAIYLADRRSTGKPFFRNGIPSLVAIPAGCRSSKCIIRFDGELTVDT 240

Query: 245 VTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYW 304
           VT+WFAT +L LP+I YY++ES+            VKVIFFS +GERA+PF+RQ +++YW
Sbjct: 241 VTNWFATTVLALPQINYYSRESL------------VKVIFFSNSGERAAPFIRQAAKDYW 288

Query: 305 AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK 364
           A ASFAF+LWREEESS WW  F VESAPAIVFLKDPGVKPVV++GS NNS    +ME NK
Sbjct: 289 ASASFAFILWREEESSYWWGAFGVESAPAIVFLKDPGVKPVVHHGSVNNSFFLNLMENNK 348

Query: 365 LQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREV 415
            QELPQLRSVTSMELGCD  GYSRAG DT  WYC I  GR S ELNKMRE 
Sbjct: 349 QQELPQLRSVTSMELGCDPHGYSRAGYDTVTWYCAIAVGRPSLELNKMRET 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
WB|WBGene00001026	813	dnj-8 [Caenorhabditis elegans	0.806	0.419	0.245	1.9e-13
UNIPROTKB|E7EP04	275	DNAJC10 "DnaJ homolog subfamil	0.501	0.770	0.243	1.4e-11
UNIPROTKB|Q3B7W8	332	DNAJC10 "DNAJC10 protein" [Hom	0.501	0.638	0.243	3.8e-11
UNIPROTKB|F1N151	793	DNAJC10 "Uncharacterized prote	0.548	0.292	0.228	6.6e-11
MGI|MGI:1914111	793	Dnajc10 "DnaJ (Hsp40) homolog,	0.503	0.268	0.25	8.5e-11
UNIPROTKB|Q8IXB1	793	DNAJC10 "DnaJ homolog subfamil	0.501	0.267	0.243	2.4e-10
RGD|1307813	793	Dnajc10 "DnaJ (Hsp40) homolog,	0.486	0.259	0.255	4.5e-10
UNIPROTKB|E2RCY4	794	DNAJC10 "Uncharacterized prote	0.503	0.268	0.243	1.6e-09
RGD|1359395	771	Dnajc16 "DnaJ (Hsp40) homolog,	0.444	0.243	0.291	1.7e-09
UNIPROTKB|E1BRA6	798	DNAJC10 "Uncharacterized prote	0.482	0.255	0.226	2.3e-09

WB|WBGene00001026 dnj-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 207 (77.9 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 96/391 (24%), Positives = 173/391 (44%)

Query:    17 LILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD 76
             ++L  +G  + LV    S     Y  LGI   +S +++K AY+  + +W+  +     A 
Sbjct:     1 MLLLRIGSLFLLVSSALSQKEDPYKVLGISRRASAKEIKSAYKSLAREWHPDKRKDEAAS 60

Query:    77 --FLKIQYAYELLTDPLWKRNYDVYG-IDEQLHI---LEKVREQYGEESYSRIDLPLLDA 130
               F++I  AYE+L+DPL K  YD +G  D+        E+ R  YG   +          
Sbjct:    61 GRFMEIAEAYEVLSDPLRKERYDRFGTFDDVKQFEDNAERARSFYGFGGFGGFGF----- 115

Query:   131 TDHSVHAFNVVTS-EDFP-SIFHDS--KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA 186
              D SV  +    S + +   I  +S  KP+++ +YS+   +C +F   WK + A LE + 
Sbjct:   116 -DESVFEYKYRMSYQQYQFKILEESNTKPYIVYIYSNYCQMCYRFHPQWKRVIADLEPLG 174

Query:   187 NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246
               G+  +   R   +L E+  I  +      P+LVA   G        R +   S  ++ 
Sbjct:   175 Y-GIATVNGNR-EQNLMEKMRISHV------PALVAIVEG---RIIPMRIDSSFSDRSIV 223

Query:   247 DWFATAILKLPRIFYYTKESMG---KNFLAK-TGPHKVKVIFFSKTGERASPFVRQI--S 300
               FA  ++  P  ++ TK + G     F+ +    +K+ V+ F   G  A+P +R +  +
Sbjct:   224 A-FAQKVI--PS-YFMTKINSGVMLSRFVDQWKSSNKISVVIF---GAAANPRIRYLLAA 276

Query:   301 RNYWAYASFAFVLWRE--EESSIWWNTFEVESAPA--IVFLKDPGVKPVVYYGSFNNSR- 355
               Y  +A FA+V   +  +E  I   + +++      I+   D   +  V   S + ++ 
Sbjct:   277 MKYSQFARFAYVSLSDSSDEVRILRESVDIKCVQCENILIYGDMEHEDAVDRLSISEAKK 336

Query:   356 -----LSEVMEQNKLQELPQLRSVTSMELGC 381
                  + E +E+NK+  LP+L S   ++  C
Sbjct:   337 LTMEAIDEFIERNKVLTLPRLSSQELLDEVC 367

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|E7EP04 DNAJC10 "DnaJ homolog subfamily C member 10" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 55/226 (24%), Positives = 99/226 (43%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG ++ L   +    QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG-EKGLE--DNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGELW 149

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   150 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 209

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+   V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   210 GMAP-VKYH-GDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAF 253

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q3B7W8 DNAJC10 "DNAJC10 protein" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 55/226 (24%), Positives = 99/226 (43%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG ++ L   +    QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG-EKGLE--DNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGELW 149

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   150 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 209

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+   V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   210 GMAP-VKYH-GDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAF 253

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1N151 DNAJC10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 6.6e-11, P = 6.6e-11
 Identities = 57/249 (22%), Positives = 110/249 (44%)

Query:    17 LILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST 74
             ++LF L ++  ++V         Y  LG+   +S  ++++A++K + K +  +    P+ 
Sbjct:    17 VMLFFLVMYMAILV---GTDQDFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA 73

Query:    75 -ADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDH 133
              +DFLK+  AYE+L D   ++ YD YG   +  + +    QY   +Y R D  + D    
Sbjct:    74 HSDFLKVNRAYEVLKDEDLRKKYDKYG---EKGLADNQGGQYESWNYYRYDFGIYDDDPE 130

Query:   134 SVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL 193
              +     +   +F +  +  + W +  YS G   C   +  W+  A  ++G+   G V  
Sbjct:   131 II----TLDRREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNC 186

Query:   194 GDIRLATHLAERKPIGQIF-FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFAT 251
             GD R+   +        +F FR G+ + V +  G +S + +  F  +     VT+ W   
Sbjct:   187 GDDRMLCRMKGVNSYPSLFIFRSGMAA-VKYH-GDRSKESLMNFAMQHVRSTVTELWTGN 244

Query:   252 AILKLPRIF 260
              +  +   F
Sbjct:   245 FVNSIQTAF 253

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

MGI|MGI:1914111 Dnajc10 "DnaJ (Hsp40) homolog, subfamily C, member 10" [Mus musculus (taxid:10090)]

 Score = 183 (69.5 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 57/228 (25%), Positives = 103/228 (45%)

Query:    24 LFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKI 80
             + Y +VV+      + Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI
Sbjct:    23 ILYVVVVVGTD--QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKI 80

Query:    81 QYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNV 140
               AYE+L D   ++ YD YG ++ L   +    QY   SY R D  + D     +     
Sbjct:    81 NRAYEVLKDEDLRKKYDKYG-EKGLE--DNQGGQYESWSYYRYDFGIYDDDPEII----T 133

Query:   141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT 200
             +   +F +  +  + W +  YS G   C   +  W+  A  ++G+   G V  GD R+  
Sbjct:   134 LERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLC 193

Query:   201 HLAERKPIGQIF-FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247
              +        +F FR G+ + V +  G +S + +  F  +     VT+
Sbjct:   194 RMKGVNSYPSLFIFRSGMAA-VKYN-GDRSKESLVAFAMQHVRSTVTE 239

GO:0001671 "ATPase activator activity" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISA;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;IDA

GO:0032781 "positive regulation of ATPase activity" evidence=IMP

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=ISO

GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISO;IDA

GO:0051117 "ATPase binding" evidence=ISO;IPI

GO:0051787 "misfolded protein binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISO

UNIPROTKB|Q8IXB1 DNAJC10 "DnaJ homolog subfamily C member 10" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 55/226 (24%), Positives = 99/226 (43%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+   DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG ++ L   +    QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG-EKGLE--DNQGGQYESWNYYRYDFGIYDDDPEII----TLERREFDAAVNSGELW 149

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   150 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 209

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+   V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   210 GMAP-VKYH-GDRSKESLVSFAMQHVRSTVTELWTGNFVNSIQTAF 253

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IDA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IDA

GO:0051787 "misfolded protein binding" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0032781 "positive regulation of ATPase activity" evidence=ISS

GO:0001671 "ATPase activator activity" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0051087 "chaperone binding" evidence=IDA

RGD|1307813 Dnajc10 "DnaJ (Hsp40) homolog, subfamily C, member 10" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 56/219 (25%), Positives = 98/219 (44%)

Query:    22 LGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFL 78
             L L    VV+      + Y  LG+   +S  ++++A++K + K +  +    P+   DFL
Sbjct:    19 LCLLVLYVVIVVGTDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFL 78

Query:    79 KIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAF 138
             KI  AYE+L D   ++ YD YG ++ L   +    QY   SY R D  + D     +   
Sbjct:    79 KINRAYEVLKDEDLRKKYDKYG-EKGLE--DNQGGQYESWSYYRYDFGIYDDDPEII--- 132

Query:   139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL 198
               +   +F +  +  + W +  YS G   C   +  W+  A  ++G+   G V  GD R+
Sbjct:   133 -TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM 191

Query:   199 ATHLAERKPIGQIF-FRRGLPSLVAFPPGCKSSDCMTRF 236
                +        +F FR G+ + V +  G +S + +  F
Sbjct:   192 LCRMKGVNSYPSLFIFRSGMAA-VKYN-GDRSKESLVSF 228

GO:0001671 "ATPase activator activity" evidence=IEA;ISO

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0032781 "positive regulation of ATPase activity" evidence=ISO

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA;ISO

GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA;ISO

GO:0051117 "ATPase binding" evidence=IEA;ISO

GO:0051787 "misfolded protein binding" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA;ISO

UNIPROTKB|E2RCY4 DNAJC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 55/226 (24%), Positives = 100/226 (44%)

Query:    40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PST-ADFLKIQYAYELLTDPLWKRNY 96
             Y  LG+   +S  ++++A++K + K +  +    P+  +DFLKI  AYE+L D   ++ Y
Sbjct:    37 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHSDFLKINRAYEVLKDEDLRKKY 96

Query:    97 DVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPW 156
             D YG  E+     +   QY   +Y R D  + D     +     +   +F +  +  + W
Sbjct:    97 DKYG--EKGLADNQEGGQYESWNYYRYDFGIYDDDPEII----TLDRREFDAAVNSGELW 150

Query:   157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FRR 215
              +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR 
Sbjct:   151 FVNFYSPGCSHCHDLAPTWRDFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 210

Query:   216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD-WFATAILKLPRIF 260
             G+ + V +  G +S + +  F  +     VT+ W    +  +   F
Sbjct:   211 GMAA-VKYH-GDRSKESLVSFAMQHVRRTVTELWTGNFVNSIQTAF 254

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

RGD|1359395 Dnajc16 "DnaJ (Hsp40) homolog, subfamily C, member 16" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 62/213 (29%), Positives = 100/213 (46%)

Query:     7 ISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN 66
             + ++   W  LI+  L +   L  L   F P  Y  LG+   +S   +K+AY+K + +W+
Sbjct:     3 LKRLSISWQFLIVLVL-ILQSLSAL--DFDP--YRVLGVSRTASQADIKKAYKKLAREWH 57

Query:    67 SGE-EIPSTAD-FLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVREQ---------Y 115
               + + P   D F++I  AYE+L++   + NYD YG   +    ++ RE          Y
Sbjct:    58 PDKNKDPGAEDKFIQISKAYEILSNEEKRTNYDHYGDAGENQGYQQQREYRFRHFHENFY 117

Query:   116 GEESYSRIDL--PLLDATDHS--VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQF 171
              +ES+          D+ D    +H F+   +E  P  F   KP+LI++ SD  + C   
Sbjct:   118 FDESFFHFPFNSERRDSIDEKYLLH-FSHYVNEVVPDSF--KKPYLIKITSDWCFSCIHI 174

Query:   172 SGAWKTIAALLEGIA-NTGMVELG-DIRLATHL 202
                WK +   LEG+    G+V  G + RLA HL
Sbjct:   175 EPIWKEVVQELEGLGVGIGVVHAGYERRLAHHL 207

GO:0016021 "integral to membrane" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|E1BRA6 DNAJC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 49/216 (22%), Positives = 97/216 (44%)

Query:    39 HYDALGIKPYSSVEQVKEAYEKFSSKWN--SGEEIPSTAD-FLKIQYAYELLTDPLWKRN 95
             +Y  LG+   +S  ++++A++K + K +    +  P+  D FLKI  AYE+L D   ++ 
Sbjct:    35 YYSLLGVSKEASSREIRQAFKKLALKLHPDKNQNDPNAHDNFLKINRAYEVLKDEDLRKK 94

Query:    96 YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
             YD YG ++ L   ++   +Y    Y R D  + D     +     +   +F +  +  + 
Sbjct:    95 YDKYG-EKGLEDQQQ-GGRYESWHYYRYDFGIYDDDPEII----TLDRGEFDAAVNSGEL 148

Query:   156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
             W +  YS     C   +  W+  A  ++G+   G V  GD R+   +        ++ F+
Sbjct:   149 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDNRMLCRIKGINSYPSLYVFK 208

Query:   215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250
              G+  +  +  G +S + +  F  +     VT+ +A
Sbjct:   209 TGMQPVKYY--GDRSKESLKNFAMQYVTSTVTELWA 242

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-09
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-07
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	6e-07
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	8e-06
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	9e-06
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	3e-05
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	6e-05
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-05
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	7e-05
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	9e-05
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-04
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-04
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-04
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	4e-04
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	4e-04
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	5e-04
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	7e-04
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	7e-04
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	7e-04
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	8e-04
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	0.001
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	0.002
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	0.002
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	0.002

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 51.4 bits (124), Expect = 7e-09
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
          +Y+ LG+   +S E++K+AY K + K+    N G+   +   F +I  AYE+L+DP  + 
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPA-AEEKFKEINEAYEVLSDPEKRA 60

Query: 95 NYD 97
           YD
Sbjct: 61 IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDP 90
            +Y+ LG+   +S++++K+AY K + K+    N G++  +   F +I  AYE+L+DP
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58

Length = 60

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 9/67 (13%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD--FLKIQYAYELLTDPLWK 93
           Y+ LG+   +S E++K+AY K + K+    N G++    A+  F +I  AYE+L+DP  +
Sbjct: 7   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK---EAEEKFKEINEAYEVLSDPEKR 63

Query: 94  RNYDVYG 100
             YD +G
Sbjct: 64  AAYDQFG 70

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTD 89
          +YD LG+ P +S E++K+AY K + K+    N  +   +   F +I  AYE+L+D
Sbjct: 2  YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPE-AEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNS--GEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +SV++VK+AY K + K++    +   +   F +++ AY+ L+DP  K +Y
Sbjct: 6   YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHY 65

Query: 97  DVYG 100
           D +G
Sbjct: 66  DQFG 69

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD----FLKIQYAYELLTDPLWKR 94
           +Y  LG+   +S E++K+AY K + K++  +  P  A+    F ++  AYE+L+D   + 
Sbjct: 3   YYTILGVSKTASPEEIKKAYRKLAVKYHPDKN-PGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 95  NYDVYGID 102
           +YD YG D
Sbjct: 62  SYDRYGKD 69

Length = 391

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   ++ E++K AY++   +W    +      +   F +IQ AYE+L+DP  + 
Sbjct: 6   YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65

Query: 95  NYDVYG 100
            YD +G
Sbjct: 66  MYDRFG 71

Length = 369

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +S +++K+AY K S K++        AD  F +I  AYE+L+D   +  Y
Sbjct: 6   YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQY 65

Query: 97  DVYG 100
           D +G
Sbjct: 66  DQFG 69

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNS--GEEIPSTADFLKIQYAYELLTDPLWKRNYD 97
           YD LG+   +S +++K+AY K S K++    +E  +   + ++Q AYE L+DP  +  YD
Sbjct: 7   YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66

Query: 98  VYG 100
            YG
Sbjct: 67  QYG 69

Length = 380

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 18/113 (15%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
            +T ++F  +  DSK  L++ Y+     C   +  ++ +A  L+G         G + +A
Sbjct: 2   ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD--------GKVVVA 53

Query: 200 ----THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW 248
               T       +   +  RG P++  FP G K      ++EG  +++++ ++
Sbjct: 54  KVDCT---ANNDLCSEYGVRGYPTIKLFPNGSKE---PVKYEGPRTLESLVEF 100

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y  LG+   +S E +K+A+ + + KW    + G +  +   F +I  AYE+L+DP  +R
Sbjct: 5   YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64

Query: 95  NYDVYG 100
            YD  G
Sbjct: 65  QYDQTG 70

Length = 365

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   ++ E++K+AY + + K+    N G++  +   F +I  AYE+L+DP  + 
Sbjct: 7   YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRA 65

Query: 95  NYDVYG 100
            YD +G
Sbjct: 66  QYDQFG 71

Length = 386

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 38  SHYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWK 93
           S+YD LG+   ++ E++K AY K + K+    N G +  S   F +   AYE+L DP  +
Sbjct: 5   SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKR 63

Query: 94  RNYDVYG 100
           + YD +G
Sbjct: 64  QAYDQFG 70

Length = 372

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +SVE +K+AY K + K+  +  +E  +   F +I  AY +L+D   +  Y
Sbjct: 7   YYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQY 66

Query: 97  DVY---GIDEQ 104
           D +   GID Q
Sbjct: 67  DRFGHAGIDNQ 77

Length = 377

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y+ LGI   +  +++K+A+ K + K++        A   F +I  A ++L++P  + NY
Sbjct: 4   YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 97  DVYGID 102
           D YG D
Sbjct: 64  DKYGHD 69

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 15/98 (15%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWN-------SGEEIPSTADFLKIQYAYELLTDPL 91
           +Y+ LG+   ++ E++K+AY + + K++         EE      F +I  AY++L+DP 
Sbjct: 5   YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEE-----KFKEINEAYQVLSDPE 59

Query: 92  WKRNYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLD 129
            ++ YD +G           ++Q G+E +S      ++
Sbjct: 60  KRKLYDQFGHAA---FSGSGQQQQGQEGFSDFGGGNIE 94

Length = 382

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG+   +S E++K+AY K + K+    N  +E  +   F +I  AYE+L+DP  +  
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE--AEEKFKEINEAYEVLSDPEKRAQ 60

Query: 96  YDVYG 100
           YD +G
Sbjct: 61  YDQFG 65

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y  LG+   +S  ++K AY K + +     N  EE  +   F +I  AYE+L+DP  +R
Sbjct: 5   YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEE--AQEKFKEISVAYEVLSDPEKRR 62

Query: 95  NYDVYG 100
             D+ G
Sbjct: 63  IVDLGG 68

Length = 378

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 14/106 (13%)

Query: 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAE 204
           DF +  +  + W +  YS     C   +  W+  A  ++G+   G V  GD R+   L  
Sbjct: 10  DFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM---LCR 66

Query: 205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250
            + +         PSL  FP G        ++ G+ S +++   FA
Sbjct: 67  SQGV------NSYPSLYVFPSGMNP----EKYYGDRSKESLVK-FA 101

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNS--GEEIPSTADFLKIQYAYELLTDPLWKRNY 96
           +Y  LG+   +S +++K+A++K + K++    +   +   F +I  AY +L+DP  +R Y
Sbjct: 6   YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIY 65

Query: 97  DVYG 100
           D YG
Sbjct: 66  DTYG 69

Length = 291

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y+ LG+   +S +++K AY K + K++        A   F +I  AY +L+D   + +Y
Sbjct: 4   YYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHY 63

Query: 97  DVYG 100
           D +G
Sbjct: 64  DRFG 67

Length = 371

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG++  +S +++K+A+ K + K+    N G +  +   F +I  AY++L+DP  K 
Sbjct: 6   YYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKA 64

Query: 95  NYDVYG 100
            YD +G
Sbjct: 65  QYDQFG 70

Length = 380

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   +S E++K++Y K + K+    N G++  +   F +   AYE+L+DP  + 
Sbjct: 6   YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKRG 64

Query: 95  NYDVYG 100
            YD YG
Sbjct: 65  IYDQYG 70

Length = 366

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG-DIRLATHL-AERKPI-- 208
           KP+LI++ SD  + C      WK +   LE +      V  G + RLA  L A   P   
Sbjct: 25  KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIV 84

Query: 209 ----GQIFFRR----GLPSLVAF 223
               GQ+ F          +V F
Sbjct: 85  GIINGQVTFYHDSSFTKQHVVDF 107

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 33  RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--------FLKIQYAY 84
           R F P  Y+ LGI   +S   +K+ Y   S K++  +  P   +        +  I  AY
Sbjct: 96  RGFDP--YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAY 153

Query: 85  ELLTDPLWKRNYDVYGIDE 103
            LLTD   + NY  YG  +
Sbjct: 154 GLLTDKKRRENYLNYGTPD 172

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.97
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.92
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.92
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.91
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.89
PTZ00102	477	disulphide isomerase; Provisional	99.89
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.87
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.87
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.86
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.85
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.84
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.84
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.84
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.81
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.8
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.79
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.79
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.79
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.78
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.77
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.76
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.75
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.75
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.75
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.74
PRK14288	369	chaperone protein DnaJ; Provisional	99.74
PRK14296	372	chaperone protein DnaJ; Provisional	99.73
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.72
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.72
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.72
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.71
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.71
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.71
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.71
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.7
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.7
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.7
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.7
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.69
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.69
PRK14286	372	chaperone protein DnaJ; Provisional	99.69
PRK09381	109	trxA thioredoxin; Provisional	99.69
PRK14279	392	chaperone protein DnaJ; Provisional	99.69
PRK14287	371	chaperone protein DnaJ; Provisional	99.68
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.68
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.67
PHA02278	103	thioredoxin-like protein	99.67
PRK14298	377	chaperone protein DnaJ; Provisional	99.67
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.67
PRK14276	380	chaperone protein DnaJ; Provisional	99.67
PRK14283	378	chaperone protein DnaJ; Provisional	99.66
PLN02309	457	5'-adenylylsulfate reductase	99.66
PRK10996	139	thioredoxin 2; Provisional	99.66
PRK14282	369	chaperone protein DnaJ; Provisional	99.66
PRK14285	365	chaperone protein DnaJ; Provisional	99.66
PRK14280	376	chaperone protein DnaJ; Provisional	99.66
PRK14299	291	chaperone protein DnaJ; Provisional	99.66
PRK14291	382	chaperone protein DnaJ; Provisional	99.65
PRK14294	366	chaperone protein DnaJ; Provisional	99.65
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PRK14278	378	chaperone protein DnaJ; Provisional	99.65
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.65
PRK14277	386	chaperone protein DnaJ; Provisional	99.64
PRK14301	373	chaperone protein DnaJ; Provisional	99.64
PRK14297	380	chaperone protein DnaJ; Provisional	99.64
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.64
PRK14284	391	chaperone protein DnaJ; Provisional	99.63
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.63
PRK14295	389	chaperone protein DnaJ; Provisional	99.62
PRK14281	397	chaperone protein DnaJ; Provisional	99.62
PRK10767	371	chaperone protein DnaJ; Provisional	99.62
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.61
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.61
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.61
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.6
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.6
PRK14290	365	chaperone protein DnaJ; Provisional	99.59
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.59
PRK14300	372	chaperone protein DnaJ; Provisional	99.59
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.59
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.59
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.59
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.58
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.58
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PRK14293	374	chaperone protein DnaJ; Provisional	99.58
PRK14289	386	chaperone protein DnaJ; Provisional	99.58
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.57
PRK14292	371	chaperone protein DnaJ; Provisional	99.57
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.56
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.55
PTZ00102	477	disulphide isomerase; Provisional	99.55
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.52
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.51
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.51
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.51
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.5
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.5
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.49
PHA03102	153	Small T antigen; Reviewed	99.49
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.47
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.46
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.46
PTZ00051	98	thioredoxin; Provisional	99.46
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.45
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.44
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.43
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.38
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.38
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.37
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.37
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.36
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.33
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.29
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.28
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.27
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.27
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.25
PRK01356	166	hscB co-chaperone HscB; Provisional	99.25
PRK05014	171	hscB co-chaperone HscB; Provisional	99.23
PTZ00062	204	glutaredoxin; Provisional	99.2
PRK00294	173	hscB co-chaperone HscB; Provisional	99.2
PRK03578	176	hscB co-chaperone HscB; Provisional	99.19
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.19
PTZ00100	116	DnaJ chaperone protein; Provisional	99.18
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.17
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.09
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.05
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.03
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.03
PHA02624	647	large T antigen; Provisional	99.02
PHA02125	75	thioredoxin-like protein	98.99
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.98
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.98
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.96
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.95
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.94
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.9
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.82
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.81
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.76
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.75
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.75
PRK01773	173	hscB co-chaperone HscB; Provisional	98.69
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.68
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.66
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.66
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.64
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.64
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.64
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.64
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.62
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.6
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.59
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.57
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.56
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.55
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.53
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.52
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.43
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.42
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.42
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.4
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.38
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.28
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.27
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.24
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.22
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.22
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.15
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.13
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.13
smart00594	122	UAS UAS domain.	98.09
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.07
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.04
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.02
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.01
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.0
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.98
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.98
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.97
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.95
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.94
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.93
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.93
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.93
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.91
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.89
PTZ00056	199	glutathione peroxidase; Provisional	97.84
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.83
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	97.82
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.81
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.8
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.8
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	97.77
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.75
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.75
PLN02412	167	probable glutathione peroxidase	97.73
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	97.72
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.66
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.66
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.66
KOG4277	468	consensus Uncharacterized conserved protein, conta	97.66
PF13728	215	TraF: F plasmid transfer operon protein	97.63
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.62
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	97.59
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.56
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.55
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.52
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.52
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.52
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.5
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	97.5
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.46
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	97.43
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.43
PLN02309	457	5'-adenylylsulfate reductase	97.42
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.4
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.4
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.39
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.37
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	97.36
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.33
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	97.33
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.29
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.26
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.25
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	97.24
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	97.19
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.17
PRK09381	109	trxA thioredoxin; Provisional	97.15
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.12
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.1
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.1
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.1
PHA02278	103	thioredoxin-like protein	97.1
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.09
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.07
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	97.05
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.05
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.04
PRK10996	139	thioredoxin 2; Provisional	97.04
PTZ00256	183	glutathione peroxidase; Provisional	97.04
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	96.98
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.96
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	96.96
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	96.95
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	96.93
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	96.93
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	96.92
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.91
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.9
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.88
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.84
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.84
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.8
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	96.79
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	96.75
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	96.75
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	96.74
PRK10606	183	btuE putative glutathione peroxidase; Provisional	96.72
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	96.66
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	96.65
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	96.64
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	96.64
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.64
PRK11200	85	grxA glutaredoxin 1; Provisional	96.63
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.61
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	96.61
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	96.56
KOG1672	211	consensus ATP binding protein [Posttranslational m	96.47
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.36
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	96.34
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.31
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	96.31
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.28
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	96.26
COG2143	182	Thioredoxin-related protein [Posttranslational mod	96.19
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	96.11
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	96.1
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	96.02
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.0
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	95.99
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.98
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	95.95
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.95
cd02947	93	TRX_family TRX family; composed of two groups: Gro	95.94
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	95.94
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	95.88
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	95.86
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	95.74
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	95.71
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	95.58
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	95.53
PRK13190	202	putative peroxiredoxin; Provisional	95.44
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	95.43
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	95.39
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	95.3
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	95.28
PTZ00253	199	tryparedoxin peroxidase; Provisional	95.23
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.23
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	95.22
PRK15000	200	peroxidase; Provisional	95.2
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	95.19
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	95.11
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	94.99
PRK10329	81	glutaredoxin-like protein; Provisional	94.95
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.91
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	94.68
KOG0431	453	consensus Auxilin-like protein and related protein	94.68
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	94.63
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	94.62
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.47
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	94.4
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	94.28
PRK13599	215	putative peroxiredoxin; Provisional	94.19
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	94.16
PRK13189	222	peroxiredoxin; Provisional	94.02
KOG2640	319	consensus Thioredoxin [Function unknown]	93.96
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	93.81
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	93.77
PRK13191	215	putative peroxiredoxin; Provisional	93.77
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	93.71
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	93.69
PTZ00137	261	2-Cys peroxiredoxin; Provisional	93.69
PTZ00051	98	thioredoxin; Provisional	93.66
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	93.56
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	93.37
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	93.34
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	93.12
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.02
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	92.91
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	92.64
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	92.56
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	92.36
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	92.15
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	91.54
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	91.46
PRK10638	83	glutaredoxin 3; Provisional	91.36
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	91.23
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	90.75
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	90.55
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	90.53
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	90.35
PHA03050	108	glutaredoxin; Provisional	90.34
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	90.21
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	90.17
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	89.66
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	89.23
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	89.13
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	88.46
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	88.04
KOG3171	273	consensus Conserved phosducin-like protein [Signal	87.28
smart00594	122	UAS UAS domain.	86.63
KOG3170	240	consensus Conserved phosducin-like protein [Signal	86.59
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	86.54
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	85.83
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	84.7
PRK10824	115	glutaredoxin-4; Provisional	83.8
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	83.54
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	83.2
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	83.18
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	82.97
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	82.1
PTZ00062	204	glutaredoxin; Provisional	80.83

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.4e-31  Score=263.04  Aligned_cols=251  Identities=17%  Similarity=0.209  Sum_probs=194.3

Q ss_pred             cceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      ...|++||..||++.|..+..++|+|||||||||++++|+|+++|..|+..   +.+|+|||+   .+..+|++|+    
T Consensus        24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---~~~~~~~~y~----   96 (493)
T KOG0190|consen   24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---EESDLASKYE----   96 (493)
T ss_pred             ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---hhhhhHhhhc----
Confidence            456899999999999999999999999999999999999999999999874   699999999   5567999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCC
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER  291 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~  291 (423)
                        |+||||+++|++|..    +..|+|+|++++|+.|++++  ..|....+.+.+....|+.+.  ...++.+|.+....
T Consensus        97 --v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~--~~~vig~F~d~~~~  166 (493)
T KOG0190|consen   97 --VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKK--DVVVIGFFKDLESL  166 (493)
T ss_pred             --CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCC--ceEEEEEecccccc
Confidence              999999999999975    45999999999999999988  567776666666577888653  33555566543222


Q ss_pred             CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC--CCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccCc
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELP  369 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~lp  369 (423)
                       ...+...|...++.+.|++..     ..+++++++++.  .+.+++++..+.....|.|.++.+.|.+||..+++|++.
T Consensus       167 -~~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~  240 (493)
T KOG0190|consen  167 -AESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVT  240 (493)
T ss_pred             -hHHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccc
Confidence             234445666667778887432     356888888863  456899998888888889999999999999999999999


Q ss_pred             ccccccccccCCCCCCccCCCCCCcceEEEEEEc-cCChhhHHHHHHHhhh
Q 014549          370 QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMREVSISA  419 (423)
Q Consensus       370 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~-~~~~~~~~~~~~~~~~  419 (423)
                      ++|..+.-.+.-.      ..     ..-++++. ....+++.+++.++++
T Consensus       241 ~ft~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~e~~~~~~~~v  280 (493)
T KOG0190|consen  241 EFTVANNAKIYSS------FV-----KLGLDFFVFFKCNRFEELRKKFEEV  280 (493)
T ss_pred             eecccccceeecc------cc-----ccceeEEeccccccHHHHHHHHHHH
Confidence            9999766655311      11     24445543 2233555565555554

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.92  E-value=1.5e-24  Score=200.40  Aligned_cols=223  Identities=16%  Similarity=0.255  Sum_probs=150.3

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      +.+..|+|.||||||+||+++.|.|.++..+|+..   +++|++||+   ..+.++.+++      |+|||||++|+++.
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT---~f~aiAnefg------iqGYPTIk~~kgd~  111 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT---RFPAIANEFG------IQGYPTIKFFKGDH  111 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc---cchhhHhhhc------cCCCceEEEecCCe
Confidence            57889999999999999999999999999999865   799999999   7778999999      99999999999886


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHH---HHHhcc
Q 014549          228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQ---ISRNYW  304 (423)
Q Consensus       228 ~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~---~a~~~~  304 (423)
                      .     ..|+|+|+.++|++|+.+-.  .|....+...+  ..|..-...+.|+.+||+..   ..|++..   +|.+  
T Consensus       112 a-----~dYRG~R~Kd~iieFAhR~a--~aiI~pi~enQ--~~fehlq~Rhq~ffVf~Gtg---e~PL~d~fidAASe--  177 (468)
T KOG4277|consen  112 A-----IDYRGGREKDAIIEFAHRCA--AAIIEPINENQ--IEFEHLQARHQPFFVFFGTG---EGPLFDAFIDAASE--  177 (468)
T ss_pred             e-----eecCCCccHHHHHHHHHhcc--cceeeecChhH--HHHHHHhhccCceEEEEeCC---CCcHHHHHHHHhhh--
Confidence            5     49999999999999998762  22222233222  12221112355888898732   2455433   3332  


Q ss_pred             ccceEEEEEccccccHHHHhhcC-CCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccCcccccccccccCCCC
Q 014549          305 AYASFAFVLWREEESSIWWNTFE-VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDA  383 (423)
Q Consensus       305 ~~~~f~~v~~~~~~~~~l~~~f~-v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~  383 (423)
                       ....+...  .+ +++++-.++ .+.-|.+.+||+..  ..+| .+.+.++|.+||+..++|-+-..+..+..++.   
T Consensus       178 -~~~~a~Ff--Sa-seeVaPe~~~~kempaV~VFKDet--f~i~-de~dd~dLseWinRERf~~fLa~dgflL~EiG---  247 (468)
T KOG4277|consen  178 -KFSVARFF--SA-SEEVAPEENDAKEMPAVAVFKDET--FEIE-DEGDDEDLSEWINRERFPGFLAADGFLLAEIG---  247 (468)
T ss_pred             -heeeeeee--cc-ccccCCcccchhhccceEEEccce--eEEE-ecCchhHHHHHHhHhhccchhhcccchHHHhC---
Confidence             22222222  22 223333333 23489999998642  2232 22346889999999998877777777766664   


Q ss_pred             CCccCCCCCCcceEEEEEEc------cCChhhHHHHHH
Q 014549          384 RGYSRAGSDTTIWYCVILAG------RLSPELNKMREV  415 (423)
Q Consensus       384 ~~~~~~~~~~~~~~cvi~~~------~~~~~~~~~~~~  415 (423)
                       .   +||     +.++++.      ++++++.++.+.
T Consensus       248 -~---sGK-----LVaLaVidEkhk~nns~eh~~~~ki  276 (468)
T KOG4277|consen  248 -A---SGK-----LVALAVIDEKHKFNNSSEHREFHKI  276 (468)
T ss_pred             -c---CCc-----eEEEEEeccccccCCcchhHHHHHH
Confidence             2   455     6666663      244455555443

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.8e-25  Score=211.45  Aligned_cols=142  Identities=17%  Similarity=0.102  Sum_probs=99.8

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchhhhhhh
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILE  109 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~  109 (423)
                      .-..+|||++|||+++|+..|||+||||||+++|||+||+   ++++|++|+.||+|||||++|+.||++|+.+..+...
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~   91 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK   91 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence            3347899999999999999999999999999999999984   7788999999999999999999999999887653210


Q ss_pred             -hhhhc--cCcccccccCCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccc
Q 014549          110 -KVREQ--YGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA  186 (423)
Q Consensus       110 -~~~~~--~~~~~f~~~~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~  186 (423)
                       .+.+.  ++.+++...+|++..+...       +.+.      .....|++.++.-.|.||-...+.|+...+-....+
T Consensus        92 ~~~~g~~~~~~f~~~f~dfg~~~~g~~-------~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~  158 (336)
T KOG0713|consen   92 DGEGGGGGNDIFSAFFGDFGVTVGGNP-------LEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA  158 (336)
T ss_pred             ccccCCcccchHHHhhcccccccCCCc-------ccCC------CCCCceEEeehhhchhhhhcccHHHHHhccCceeec
Confidence             01111  2333333334433222211       1111      345567777778889999888877776655443333


Q ss_pred             e
Q 014549          187 N  187 (423)
Q Consensus       187 ~  187 (423)
                      .
T Consensus       159 ~  159 (336)
T KOG0713|consen  159 P  159 (336)
T ss_pred             C
Confidence            3

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.91  E-value=4e-23  Score=212.74  Aligned_cols=222  Identities=16%  Similarity=0.211  Sum_probs=165.6

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |++||.++|++.++++++++|.||||||++|+++.|.|+++|+.+++.   +.++.|||+   ....+|++++      |
T Consensus         3 v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---~~~~l~~~~~------i   73 (462)
T TIGR01130         3 VLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT---EEKDLAQKYG------V   73 (462)
T ss_pred             ceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC---CcHHHHHhCC------C
Confidence            789999999999988999999999999999999999999999998754   799999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCch
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASP  294 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~  294 (423)
                      .++||+++|++|...   ...|.|.++.++|.+|+.+..  .|....+++.+.++.|+...  ...+|+|+.+..+....
T Consensus        74 ~~~Pt~~~~~~g~~~---~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~~  146 (462)
T TIGR01130        74 SGYPTLKIFRNGEDS---VSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLADD--DVVVIGFFKDLDSELND  146 (462)
T ss_pred             ccccEEEEEeCCccc---eeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhcC--CcEEEEEECCCCcHHHH
Confidence            999999999988751   358999999999999998872  23333366555567777653  23445455433333445


Q ss_pred             HHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce--eEecCCC--ChhHHHHHHHhhccccCcc
Q 014549          295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQELPQ  370 (423)
Q Consensus       295 ~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~--~~y~g~~--~~~~l~~fi~~~~~~~lp~  370 (423)
                      .+..+|..+.....+ .+...   ...+.++++.. .+++++|+......  ..|.|+.  +.+.|.+||..+.+|.+++
T Consensus       147 ~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~  221 (462)
T TIGR01130       147 TFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGE  221 (462)
T ss_pred             HHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEe
Confidence            566677777665542 22211   23567777764 46666665543332  3567765  4579999999999999999


Q ss_pred             cccccccccC
Q 014549          371 LRSVTSMELG  380 (423)
Q Consensus       371 l~~~~~~~~~  380 (423)
                      ++..+...+.
T Consensus       222 ~~~~~~~~~~  231 (462)
T TIGR01130       222 FTQETAAKYF  231 (462)
T ss_pred             eCCcchhhHh
Confidence            9988776554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.89  E-value=2.1e-23  Score=173.27  Aligned_cols=107  Identities=8%  Similarity=0.050  Sum_probs=94.0

Q ss_pred             CCCCCCCCCcceeeEeccCCcccc---cCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHH
Q 014549          126 PLLDATDHSVHAFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL  202 (423)
Q Consensus       126 ~~~~~~~~~~~~v~~L~~~nf~~~---v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l  202 (423)
                      |+|.+.    +.|++|+++||++.   ++++++++|.||||||++|+.+.|.|+++|+.+++.+.|++|||+   .+..+
T Consensus         3 ~~~~~~----~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d---~~~~l   75 (113)
T cd03006           3 PFFSQR----SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW---WPQGK   75 (113)
T ss_pred             CccCCC----CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC---CChHH
Confidence            455444    34899999999986   588999999999999999999999999999999988999999999   44558


Q ss_pred             H-hhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          203 A-ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       203 ~-~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      | ++++      |+++|||++|++|..    +..|.|.++.+.|+.|+
T Consensus        76 ~~~~~~------I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          76 CRKQKH------FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             HHHhcC------CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence            8 5899      999999999998865    56899999999999884

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.89  E-value=5.4e-22  Score=205.62  Aligned_cols=211  Identities=15%  Similarity=0.182  Sum_probs=156.9

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|.+|+.++|++.+.+++.++|.||||||++|+++.|.|+++|+.+++   .+.++.|||+   ....+|++++      
T Consensus        33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~---~~~~l~~~~~------  103 (477)
T PTZ00102         33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT---EEMELAQEFG------  103 (477)
T ss_pred             CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC---CCHHHHHhcC------
Confidence            478999999999998889999999999999999999999999998864   4899999999   5556999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCc
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS  293 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~  293 (423)
                      |++|||+++|.+|..     ..|.|.++.+.|++|+.+..  .|....+++.+....+....  ...+++.+.+..+...
T Consensus       104 i~~~Pt~~~~~~g~~-----~~y~g~~~~~~l~~~l~~~~--~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  174 (477)
T PTZ00102        104 VRGYPTIKFFNKGNP-----VNYSGGRTADGIVSWIKKLT--GPAVTEVESASEIKLIAKKI--FVAFYGEYTSKDSELY  174 (477)
T ss_pred             CCcccEEEEEECCce-----EEecCCCCHHHHHHHHHHhh--CCCceeecCHHHHHHhhccC--cEEEEEEeccCCcHHH
Confidence            999999999999865     28999999999999999872  34444455443233332221  1233334443322233


Q ss_pred             hHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccCccccc
Q 014549          294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRS  373 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~  373 (423)
                      ..+..+|..++....|..+.  .           . ..+.+++++..+.....|.| .+.++|.+||..+.+|.+.+++.
T Consensus       175 ~~f~~~a~~~~~~~~F~~~~--~-----------~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~  239 (477)
T PTZ00102        175 KKFEEVADKHREHAKFFVKK--H-----------E-GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINA  239 (477)
T ss_pred             HHHHHHHHhccccceEEEEc--C-----------C-CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCc
Confidence            44566788887776665542  1           1 24667788765544433344 58899999999999999999999


Q ss_pred             ccccccC
Q 014549          374 VTSMELG  380 (423)
Q Consensus       374 ~~~~~~~  380 (423)
                      .+.....
T Consensus       240 ~~~~~~~  246 (477)
T PTZ00102        240 ENYRRYI  246 (477)
T ss_pred             cchHHHh
Confidence            9886654

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.87  E-value=2.8e-21  Score=179.24  Aligned_cols=216  Identities=15%  Similarity=0.221  Sum_probs=156.6

Q ss_pred             eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhh-----ccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-----GIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-----~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      |+.+|++.++++.+.++|.|||+||..++.++|+|+++|..++     |.+..|.|||+   .+..++.+|.      |.
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~   71 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN   71 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence            4678999999999999999999999999999999999999886     34789999999   6777999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhc-CCCceEEEEEecCCCCCch
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT-GPHKVKVIFFSKTGERASP  294 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~-~~~~~~vl~f~~~~~~~~~  294 (423)
                      +|||+++|++|.-.   ...|+|.|++++|.+||.++.. -|    |.....+.++-+-. +..+.++.+|.+.......
T Consensus        72 KyPTlKvfrnG~~~---~rEYRg~RsVeaL~efi~kq~s-~~----i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~  143 (375)
T KOG0912|consen   72 KYPTLKVFRNGEMM---KREYRGQRSVEALIEFIEKQLS-DP----INEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYD  143 (375)
T ss_pred             cCceeeeeeccchh---hhhhccchhHHHHHHHHHHHhc-cH----HHHHHhHHHHHhhhccccceEEEEeccCCCchHH
Confidence            99999999999763   3489999999999999998822 12    11111122222222 2455677788744323344


Q ss_pred             HHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce-eEecCCCC-hhHHHHHHHhhccccCcccc
Q 014549          295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP-VVYYGSFN-NSRLSEVMEQNKLQELPQLR  372 (423)
Q Consensus       295 ~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~-~~y~g~~~-~~~l~~fi~~~~~~~lp~l~  372 (423)
                      .++..|.-+++...|.. ...+..     ..-.-.+.+ +++|+++...+ ..|.|.++ .+.++.||.+.-.|++-++|
T Consensus       144 ~~~kva~~lr~dc~f~V-~~gD~~-----~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT  216 (375)
T KOG0912|consen  144 NLRKVASLLRDDCVFLV-GFGDLL-----KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT  216 (375)
T ss_pred             HHHHHHHHHhhccEEEe-eccccc-----cCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence            45667777777766543 333321     111111122 56666554444 36899985 67899999999999999999


Q ss_pred             cccccccC
Q 014549          373 SVTSMELG  380 (423)
Q Consensus       373 ~~~~~~~~  380 (423)
                      =+|..++.
T Consensus       217 FeN~EELt  224 (375)
T KOG0912|consen  217 FENAEELT  224 (375)
T ss_pred             hccHHHHh
Confidence            99988875

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.3e-22  Score=197.20  Aligned_cols=71  Identities=30%  Similarity=0.499  Sum_probs=66.5

Q ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (423)
Q Consensus        35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~  105 (423)
                      ...|||++|||+++||.+|||+|||+||++||||+|+   +++++|++|++||+|||||++|+.||+||+.+..
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            3679999999999999999999999999999999998   3788999999999999999999999999998743

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.86  E-value=4.9e-22  Score=162.22  Aligned_cols=99  Identities=21%  Similarity=0.490  Sum_probs=91.2

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      |++||.++|++.+.++++|+|.||+|||++|+++.|.|+++|+.+++.+.|++|||+   .+..+|++++      |+++
T Consensus         3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~---~~~~~~~~~~------v~~~   73 (101)
T cd03003           3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG---DDRMLCRSQG------VNSY   73 (101)
T ss_pred             eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC---ccHHHHHHcC------CCcc
Confidence            688999999999988899999999999999999999999999999998999999999   4456999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      ||+++|++|..    ...|.|.++.+.|++|+
T Consensus        74 Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          74 PSLYVFPSGMN----PEKYYGDRSKESLVKFA  101 (101)
T ss_pred             CEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence            99999998865    46899999999999884

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1e-20  Score=190.68  Aligned_cols=210  Identities=17%  Similarity=0.327  Sum_probs=157.0

Q ss_pred             eEeccCCccc-ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          139 NVVTSEDFPS-IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       139 ~~L~~~nf~~-~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      ..++..+|.. .+....+|+|+||+|||+||+.+.|+|+++++.+++.+.+|.|||+   .+..+|++++      |++|
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~---~~~~~~~~y~------i~gf  102 (383)
T KOG0191|consen   32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCD---EHKDLCEKYG------IQGF  102 (383)
T ss_pred             hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCch---hhHHHHHhcC------CccC
Confidence            3344455554 4488999999999999999999999999999999999999999999   6666999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCC-----c-eeecccchhhhhhhhhcCCCceEEEEEec---C
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP-----R-IFYYTKESMGKNFLAKTGPHKVKVIFFSK---T  288 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p-----~-~~~it~~~~~~~fl~~~~~~~~~vl~f~~---~  288 (423)
                      ||+++|.+| ..   +..|.|.++.+.+.+|+.+.+....     . ...++..+ +...... .+..++|.|+.+   +
T Consensus       103 Ptl~~f~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~-~~~~~lv~f~aPwc~~  176 (383)
T KOG0191|consen  103 PTLKVFRPG-KK---PIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKD-SDADWLVEFYAPWCGH  176 (383)
T ss_pred             cEEEEEcCC-Cc---eeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhc-cCcceEEEEeccccHH
Confidence            999999999 32   6789999999999999988733221     1 11123222 2222221 234478888775   2


Q ss_pred             CCCCchHHHHHHHhcc--ccceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhcc
Q 014549          289 GERASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL  365 (423)
Q Consensus       289 ~~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~  365 (423)
                      ++...|.+..++..+.  ..+.++.   .+++ ...++++++|..+|++.+|+++......|.|.++.+.|.+|++...-
T Consensus       177 ck~l~~~~~~~a~~~~~~~~v~~~~---~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~  253 (383)
T KOG0191|consen  177 CKKLAPEWEKLAKLLKSKENVELGK---IDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKER  253 (383)
T ss_pred             hhhcChHHHHHHHHhccCcceEEEe---eccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcC
Confidence            3455688888887664  3333333   3443 37899999999999999999877624455788999999999998655


Q ss_pred             c
Q 014549          366 Q  366 (423)
Q Consensus       366 ~  366 (423)
                      .
T Consensus       254 ~  254 (383)
T KOG0191|consen  254 R  254 (383)
T ss_pred             C
Confidence            5

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.84  E-value=2.7e-21  Score=159.98  Aligned_cols=103  Identities=16%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             eeEeccCCcccccCCCCcEEEEEec--CCCc---cccccHHHHHHHHHHhhccceEEEEEcccc--hhhhHHHhhCCCCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHLAERKPIGQ  210 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYa--pwC~---~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--~~~~~l~~~~~~~~  210 (423)
                      +++||+.||+++|++++.+||+|||  |||+   ||++++|+|.+++..    +.||+|||++.  ..+.+||++|+   
T Consensus         3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~---   75 (116)
T cd03007           3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK---   75 (116)
T ss_pred             eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence            6899999999999999999999999  9999   888888888887764    78999999421  13467999999   


Q ss_pred             ccccc--CccEEEEeCCCCCCCCCcccccCC-CCHHHHHHHHHHh
Q 014549          211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~--~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~fi~~~  252 (423)
                         |+  +||||++|++|...  .+..|+|. |+.++|++|+.++
T Consensus        76 ---I~~~gyPTl~lF~~g~~~--~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          76 ---LDKESYPVIYLFHGGDFE--NPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             ---CCcCCCCEEEEEeCCCcC--CCccCCCCcccHHHHHHHHHhc
Confidence               98  99999999998521  14689997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.84  E-value=5.2e-21  Score=158.15  Aligned_cols=101  Identities=20%  Similarity=0.309  Sum_probs=90.4

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc------cceEEEEEcccchhhhHHHhhCCCCc
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~------~~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      .|++|+.++|++.++++++++|.||||||++|+++.|.|+++|+.+++      .+.+++|||+   .+.++|++++   
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d---~~~~l~~~~~---   75 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD---KESDIADRYR---   75 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC---CCHHHHHhCC---
Confidence            478999999999998889999999999999999999999999998753      4789999999   4456999999   


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                         |+++||+++|++|+..   ...|.|.++.++|++|+
T Consensus        76 ---v~~~Ptl~~~~~g~~~---~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          76 ---INKYPTLKLFRNGMMM---KREYRGQRSVEALAEFV  108 (108)
T ss_pred             ---CCcCCEEEEEeCCcCc---ceecCCCCCHHHHHhhC
Confidence               9999999999999742   46899999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.84  E-value=5.7e-21  Score=156.65  Aligned_cols=101  Identities=21%  Similarity=0.447  Sum_probs=90.2

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|++||.++|++.+ +++++++|.||||||++|+++.|.|+++++.+.+.+.+++|||+   ....+|++++      |+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------i~   72 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ---KYESLCQQAN------IR   72 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC---chHHHHHHcC------CC
Confidence            46889999999887 66789999999999999999999999999999888999999999   4556999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCC-HHHHHHHH
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF  249 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~-~~~l~~fi  249 (423)
                      ++||+++|.+|+..   ...|.|.++ .++|.+|+
T Consensus        73 ~~Pt~~~~~~g~~~---~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          73 AYPTIRLYPGNASK---YHSYNGWHRDADSILEFI  104 (104)
T ss_pred             cccEEEEEcCCCCC---ceEccCCCCCHHHHHhhC
Confidence            99999999998432   678999987 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.81  E-value=5.3e-20  Score=149.85  Aligned_cols=102  Identities=17%  Similarity=0.362  Sum_probs=94.1

Q ss_pred             eeEeccCCcccccCC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.+||.++|++.+.+ +++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+   ....+|++++      |.+
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~---~~~~l~~~~~------v~~   71 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD---ENKELCKKYG------VKS   71 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TSHHHHHHTT------CSS
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh---ccchhhhccC------CCC
Confidence            578999999999965 999999999999999999999999999999988999999999   4456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|+.    ...|.|.++.+.|.+|+.++
T Consensus        72 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   72 VPTIIFFKNGKE----VKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             SSEEEEEETTEE----EEEEESSSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCcE----EEEEECCCCHHHHHHHHHcC
Confidence            999999999987    45899999999999999874

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.80  E-value=1.1e-19  Score=148.28  Aligned_cols=98  Identities=17%  Similarity=0.386  Sum_probs=86.7

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|++||.++|++++.+.  |+|.||||||++|+++.|.|+++++.+++. +.+++|||++   ...+|++++      |+
T Consensus         2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~------i~   70 (101)
T cd02994           2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFF------VT   70 (101)
T ss_pred             ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcC------Cc
Confidence            47899999999988543  899999999999999999999999988754 8999999994   455999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~  250 (423)
                      ++||+++|++|..     ..|.|.++.++|.+|+.
T Consensus        71 ~~Pt~~~~~~g~~-----~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          71 ALPTIYHAKDGVF-----RRYQGPRDKEDLISFIE  100 (101)
T ss_pred             ccCEEEEeCCCCE-----EEecCCCCHHHHHHHHh
Confidence            9999999988853     47999999999999985

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=6.4e-20  Score=176.10  Aligned_cols=69  Identities=35%  Similarity=0.600  Sum_probs=66.5

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      .+.+|++|||+++|+.+|||+|||+||++||||+||++.++|++|..||++||||++|+.||+||+++.
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            468999999999999999999999999999999999999999999999999999999999999998864

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.79  E-value=1.9e-19  Score=148.62  Aligned_cols=105  Identities=20%  Similarity=0.391  Sum_probs=91.5

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |++|+.++|++.| +++++++|.||+|||++|+++.|.|+++|+.+.+.+.++.|||+++. ...+|++++      |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~   74 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG   74 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence            6889999999988 66788999999999999999999999999999988999999999532 466999999      999


Q ss_pred             ccEEEEeCCCCCC-CCCcccccCCCCHHHHHHHH
Q 014549          217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       217 ~Pti~~f~~g~~~-~~~~~~y~G~~~~~~l~~fi  249 (423)
                      +||+++|.+|+.. ......|.|.++.++|++|+
T Consensus        75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence            9999999999620 01246899999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.79  E-value=2.9e-19  Score=149.55  Aligned_cols=110  Identities=14%  Similarity=0.175  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCcceeeEeccCCccccc-CCCCcEEEEEecCCCcc--cc--ccHHHHHHHHHHh--hccceEEEEEcccch
Q 014549          125 LPLLDATDHSVHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYL--CG--QFSGAWKTIAALL--EGIANTGMVELGDIR  197 (423)
Q Consensus       125 ~~~~~~~~~~~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~--C~--~~~p~~~~~A~~l--~~~~~~~~Vdc~~~~  197 (423)
                      +|-|||.    ..|.+||++||++.| ++..++++.||++||++  |+  .++|..+++|.++  ++.++|++|||+   
T Consensus         2 ~~~~~~~----~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d---   74 (120)
T cd03065           2 FPEYDGK----DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK---   74 (120)
T ss_pred             CcccCCC----cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC---
Confidence            4556665    247999999999988 55667777888888865  99  8888888888877  667999999999   


Q ss_pred             hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          198 LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       198 ~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .+..||++|+      |+++||+++|++|+.    . .|.|.++.+.|++|+.+.
T Consensus        75 ~~~~La~~~~------I~~iPTl~lfk~G~~----v-~~~G~~~~~~l~~~l~~~  118 (120)
T cd03065          75 KDAKVAKKLG------LDEEDSIYVFKDDEV----I-EYDGEFAADTLVEFLLDL  118 (120)
T ss_pred             CCHHHHHHcC------CccccEEEEEECCEE----E-EeeCCCCHHHHHHHHHHH
Confidence            4556999999      999999999999975    3 499999999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.78  E-value=4.2e-19  Score=147.06  Aligned_cols=102  Identities=14%  Similarity=0.325  Sum_probs=88.2

Q ss_pred             eeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhh-CCCCcc
Q 014549          137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER-KPIGQI  211 (423)
Q Consensus       137 ~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~-~~~~~~  211 (423)
                      .|++|+.++|+.++   +++++++|.||+|||++|+++.|.|+++|+.+++. +.++.|||+.+  ...+|++ ++    
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~----   75 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQ----   75 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcC----
Confidence            47899999999887   45789999999999999999999999999999875 89999999952  2347764 78    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCC-CCHHHHHHHH
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF  249 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~fi  249 (423)
                        |+++||+++|.+|...   +..|.|. ++.++|+.|+
T Consensus        76 --v~~~Pti~~f~~~~~~---~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          76 --LKSFPTILFFPKNSRQ---PIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             --CCcCCEEEEEcCCCCC---ceeccCCCCCHHHHHhhC
Confidence              9999999999988653   6689995 9999999985

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.77  E-value=1.1e-18  Score=142.36  Aligned_cols=100  Identities=24%  Similarity=0.462  Sum_probs=89.8

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.+++.++|++.+ +.+.+++|.||+|||++|+++.|.|+++++.+.+.+.++.+||+   ....+|++++      |++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~---~~~~~~~~~~------i~~   72 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD---VHQSLAQQYG------VRG   72 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc---chHHHHHHCC------CCc
Confidence            6889999999887 55667999999999999999999999999999988999999999   4556999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      +||+++|.+|...   ...|.|.++.++|++|+
T Consensus        73 ~P~~~~~~~~~~~---~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          73 FPTIKVFGAGKNS---PQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             cCEEEEECCCCcc---eeecCCCCCHHHHHHHh
Confidence            9999999988432   56899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.76  E-value=9.9e-19  Score=142.42  Aligned_cols=98  Identities=16%  Similarity=0.393  Sum_probs=87.3

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |++||.++|++.+.++ +++|.||++||++|+.+.|.|+++++.+++   .+.++.|||+   ....+|++++      |
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------v   71 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---QHRELCSEFQ------V   71 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC---CChhhHhhcC------C
Confidence            5789999999999655 599999999999999999999999999987   5899999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      .++||+++|++|..    ...|.|.++.++|.+|+
T Consensus        72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence            99999999998865    46799999999999885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.75  E-value=1.2e-18  Score=161.28  Aligned_cols=105  Identities=22%  Similarity=0.448  Sum_probs=92.5

Q ss_pred             cceeeEeccCCcccccC-----CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC
Q 014549          135 VHAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG  209 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~-----~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~  209 (423)
                      .+.|++||++||++.+.     .+++|+|+||||||++|+++.|.|+++|+++++.+.++.|||+   .+..+|++++  
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~---~~~~l~~~~~--  103 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT---RALNLAKRFA--  103 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc---ccHHHHHHcC--
Confidence            35689999999999873     2589999999999999999999999999999998999999999   4556999999  


Q ss_pred             ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          |+++||+++|.+|..    ...+.|.++.++|.+|+.+.
T Consensus       104 ----I~~~PTl~~f~~G~~----v~~~~G~~s~e~L~~fi~~~  138 (224)
T PTZ00443        104 ----IKGYPTLLLFDKGKM----YQYEGGDRSTEKLAAFALGD  138 (224)
T ss_pred             ----CCcCCEEEEEECCEE----EEeeCCCCCHHHHHHHHHHH
Confidence                999999999998865    22345889999999999877

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=3.3e-18  Score=171.54  Aligned_cols=224  Identities=13%  Similarity=0.186  Sum_probs=142.4

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +|++|+..+|+..| .+.+.++|+||++|||||++|+|.|+++|+.+++.   +.+++|||.+.. +..||++++     
T Consensus        40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~-----  113 (606)
T KOG1731|consen   40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFS-----  113 (606)
T ss_pred             CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcC-----
Confidence            48999999999988 66679999999999999999999999999999864   799999999664 466999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhc---------cCCceeecccchhhhhhhhhc--CCCceE
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL---------KLPRIFYYTKESMGKNFLAKT--GPHKVK  281 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~---------~~p~~~~it~~~~~~~fl~~~--~~~~~~  281 (423)
                       |.+|||+++|+++.........+.|.....++.+.+.+.+.         ..|..-.+++.+.+....++.  ..+.+.
T Consensus       114 -V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvA  192 (606)
T KOG1731|consen  114 -VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVA  192 (606)
T ss_pred             -CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeE
Confidence             99999999999986532234466777777888877766532         234333343322222222221  223333


Q ss_pred             EEEEecCCCCCchHHHHHHHhcc--ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC---CChhHH
Q 014549          282 VIFFSKTGERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS---FNNSRL  356 (423)
Q Consensus       282 vl~f~~~~~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~---~~~~~l  356 (423)
                      + ++...   ...+-...+..+.  +.+....+  .+.+...+.+ ++....|..++|+++..+++.-.+.   .-.+.|
T Consensus       193 i-v~e~~---~s~lg~~~~l~~l~~~~v~vr~~--~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I  265 (606)
T KOG1731|consen  193 I-VFETE---PSDLGWANLLNDLPSKQVGVRAR--LDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKI  265 (606)
T ss_pred             E-EEecC---CcccHHHHHHhhccCCCcceEEE--ecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHH
Confidence            3 44322   1222222222222  22332222  2333233444 6777899999999988776542222   223566


Q ss_pred             HHHHHhh---ccccCcccccc
Q 014549          357 SEVMEQN---KLQELPQLRSV  374 (423)
Q Consensus       357 ~~fi~~~---~~~~lp~l~~~  374 (423)
                      .++|.+.   ..++++.++..
T Consensus       266 ~~~lg~~~~a~~pt~~p~~~~  286 (606)
T KOG1731|consen  266 DDLLGDKNEASGPTLHPITAT  286 (606)
T ss_pred             HHHhcCccccCCCCcCccccc
Confidence            6776654   34455555543

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.75  E-value=3e-18  Score=139.91  Aligned_cols=100  Identities=18%  Similarity=0.390  Sum_probs=87.5

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |.+|+.++|++.+ +++++++|.||+|||++|+.+.|.|+++++.+++  .+.++++||+++    +++..++      +
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~------~   71 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFV------V   71 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhcc------C
Confidence            7889999999988 5568999999999999999999999999999987  389999999943    3778888      8


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      .++||+++|++|..  .....|.|.++.++|++|+
T Consensus        72 ~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          72 DGFPTILFFPAGDK--SNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             CCCCEEEEEcCCCc--CCceEccCCcCHHHHHhhC
Confidence            89999999999872  1256899999999999985

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.74  E-value=3.3e-18  Score=142.16  Aligned_cols=100  Identities=21%  Similarity=0.360  Sum_probs=86.5

Q ss_pred             eEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          139 NVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       139 ~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      ..++.++|.+.+   ..+++|+|.||||||++|+.+.|.|+++++.+.+. +.+++|||+   ....+|++++      |
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d---~~~~l~~~~~------V   77 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG---HERRLARKLG------A   77 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc---ccHHHHHHcC------C
Confidence            457788888644   36899999999999999999999999999999874 899999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      +++||+++|++|+.    ...+.|.++.+.|.+|+.+
T Consensus        78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence            99999999998865    4466799999999999865

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.2e-18  Score=171.96  Aligned_cols=68  Identities=28%  Similarity=0.437  Sum_probs=63.7

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||+||||+++||.+|||+|||+||++||||++++   +.++|++|++||++|+||++|+.||+||+.+
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            4699999999999999999999999999999999872   6788999999999999999999999999864

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=3.9e-18  Score=170.29  Aligned_cols=68  Identities=21%  Similarity=0.436  Sum_probs=64.0

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+  ++.++|++|++||++|+||++|+.||+||+.+
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~   72 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA   72 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence            469999999999999999999999999999999986  47789999999999999999999999999864

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.8e-18  Score=143.92  Aligned_cols=103  Identities=18%  Similarity=0.286  Sum_probs=93.9

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .+..++..+|++.| +++.|++|.|||+||++|+.+.|..++++.+++|.+++++||.+   .+.+|+.+|+      |+
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD---~~~ela~~Y~------I~  114 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD---EHPELAEDYE------IS  114 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc---cccchHhhcc------ee
Confidence            45668888999665 99999999999999999999999999999999999999999999   5566999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .+||+++|++|.+    ...+-|..+.+.|.+|+.+.
T Consensus       115 avPtvlvfknGe~----~d~~vG~~~~~~l~~~i~k~  147 (150)
T KOG0910|consen  115 AVPTVLVFKNGEK----VDRFVGAVPKEQLRSLIKKF  147 (150)
T ss_pred             eeeEEEEEECCEE----eeeecccCCHHHHHHHHHHH
Confidence            9999999999987    45788999999999999887

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=7e-18  Score=169.87  Aligned_cols=104  Identities=15%  Similarity=0.338  Sum_probs=91.4

Q ss_pred             ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc--ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~--~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      ++|..|-.+||++++ ++++-+||+|||||||||++++|+|+++|+.+++.  +.||++|.+.|..     ....     
T Consensus       366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-----~~~~-----  435 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-----PSLK-----  435 (493)
T ss_pred             CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-----cccc-----
Confidence            459999999999998 88999999999999999999999999999999985  7999999995532     1123     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.+||||++|+.|.+  +++..|+|.|+.+++..|+.+.
T Consensus       436 -~~~fPTI~~~pag~k--~~pv~y~g~R~le~~~~fi~~~  472 (493)
T KOG0190|consen  436 -VDGFPTILFFPAGHK--SNPVIYNGDRTLEDLKKFIKKS  472 (493)
T ss_pred             -ccccceEEEecCCCC--CCCcccCCCcchHHHHhhhccC
Confidence             789999999999974  3578999999999999999776

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.72  E-value=1.3e-17  Score=136.21  Aligned_cols=101  Identities=21%  Similarity=0.347  Sum_probs=89.8

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      |++|++.+|++.+..+++++|.||++||++|+++.|.++++++.+.  +.+.++.+||+++ ....+|++++      |+
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~   74 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK   74 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence            6889999999999888899999999999999999999999999987  5578999999952 2566999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      ++||+++|++|+.    ...|.|..+.+.+++|+
T Consensus        75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM  104 (104)
T ss_pred             cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence            9999999999875    45899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.71  E-value=2.4e-17  Score=132.98  Aligned_cols=92  Identities=14%  Similarity=0.270  Sum_probs=81.5

Q ss_pred             Cccccc-CC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          145 DFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       145 nf~~~v-~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      +|++.| ++ +++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+   ....+|++++      |.++||+++
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~l~~~~~------i~~~Pt~~~   72 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD---AQPQIAQQFG------VQALPTVYL   72 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc---CCHHHHHHcC------CCCCCEEEE
Confidence            677677 34 679999999999999999999999999999888899999999   5566999999      999999999


Q ss_pred             eCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          223 FPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       223 f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      |.+|+.    ...|.|..+.+.|.+|+
T Consensus        73 ~~~g~~----~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          73 FAAGQP----VDGFQGAQPEEQLRQML   95 (96)
T ss_pred             EeCCEE----eeeecCCCCHHHHHHHh
Confidence            998865    35789999999999986

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.71  E-value=8.9e-16  Score=145.76  Aligned_cols=228  Identities=17%  Similarity=0.235  Sum_probs=152.5

Q ss_pred             cCCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHH-------HHHHHHhhcc-ceEEEEEcc
Q 014549          123 IDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW-------KTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       123 ~~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~-------~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      ..||-|+|.+.    |++||.+||+++++..+..+|.||.|-- .-+.....|       +-+|+-++.. +.||.||..
T Consensus        25 LefP~YDGkDR----Vi~LneKNfk~~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~   99 (383)
T PF01216_consen   25 LEFPEYDGKDR----VIDLNEKNFKRALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK   99 (383)
T ss_dssp             -SSSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT
T ss_pred             cCCccCCCccc----eEEcchhHHHHHHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH
Confidence            35788888744    7999999999999999999999999874 334443334       2235555554 799999999


Q ss_pred             cchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhh
Q 014549          195 DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAK  274 (423)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~  274 (423)
                         +...|++++|      +...++|.+|..|..     +.|.|.++++.|++|+...+. -| +.+|++...+..|..-
T Consensus       100 ---Kd~klAKKLg------v~E~~SiyVfkd~~~-----IEydG~~saDtLVeFl~dl~e-dP-VeiIn~~~e~~~Fe~i  163 (383)
T PF01216_consen  100 ---KDAKLAKKLG------VEEEGSIYVFKDGEV-----IEYDGERSADTLVEFLLDLLE-DP-VEIINNKHELKAFERI  163 (383)
T ss_dssp             ---TTHHHHHHHT--------STTEEEEEETTEE-----EEE-S--SHHHHHHHHHHHHS-SS-EEEE-SHHHHHHHHH-
T ss_pred             ---HHHHHHHhcC------ccccCcEEEEECCcE-----EEecCccCHHHHHHHHHHhcc-cc-hhhhcChhhhhhhhhc
Confidence               5566999999      889999999999975     599999999999999999833 33 3345554434555542


Q ss_pred             cCCCceEEE-EEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-CC
Q 014549          275 TGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FN  352 (423)
Q Consensus       275 ~~~~~~~vl-~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~  352 (423)
                      . + .+.|+ +|.+........+..+|..|..+++|..+.     .+.++++++++ ...|-+|++....|+...|+ .+
T Consensus       164 e-d-~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~  235 (383)
T PF01216_consen  164 E-D-DIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYT  235 (383)
T ss_dssp             --S-S-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--
T ss_pred             c-c-ceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCC
Confidence            2 1 25555 565432112233455899999999988774     45699999996 77899999999999988665 57


Q ss_pred             hhHHHHHHHhhccccCccccccccccc
Q 014549          353 NSRLSEVMEQNKLQELPQLRSVTSMEL  379 (423)
Q Consensus       353 ~~~l~~fi~~~~~~~lp~l~~~~~~~~  379 (423)
                      ...|.+||++|+.|++.+++..+++..
T Consensus       236 e~e~~~fi~~h~rptlrkl~~~~m~e~  262 (383)
T PF01216_consen  236 EEELVEFIEEHKRPTLRKLRPEDMFET  262 (383)
T ss_dssp             HHHHHHHHHHT-S-SEEE--GGGHHHH
T ss_pred             HHHHHHHHHHhchhHhhhCChhhhhhh
Confidence            789999999999999999999999876

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.71  E-value=2.5e-17  Score=133.83  Aligned_cols=99  Identities=23%  Similarity=0.401  Sum_probs=89.5

Q ss_pred             eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchhhhHHHhhCCCCccccccCcc
Q 014549          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P  218 (423)
                      |+.++|++.+.++++++|.||++||++|+.+.|.|+++++.+++  .+.++.+||+   ....+|++++      |.++|
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~------i~~~P   71 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT---AEKDLASRFG------VSGFP   71 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc---chHHHHHhCC------CCcCC
Confidence            56788998888899999999999999999999999999999988  5899999999   5566999999      99999


Q ss_pred             EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       219 ti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++.+|.+|+.    +..|.|.++.+.|..|+.+.
T Consensus        72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence            9999999864    45899999999999999764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.71  E-value=2.8e-17  Score=134.31  Aligned_cols=101  Identities=20%  Similarity=0.394  Sum_probs=88.2

Q ss_pred             eeEeccCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |.+||+++|++.+. ++++++|.||++||++|+++.|.|+++++.++  +.+.++.+||+++  ...+|++++      |
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~------i   73 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYG------V   73 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCC------C
Confidence            67899999999884 45699999999999999999999999999997  4589999999941  566999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      .++|++++|.+|...   ...|.|.++.++|.+|+
T Consensus        74 ~~~P~~~~~~~~~~~---~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          74 SGFPTLKFFPKGSTE---PVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             CCcCEEEEEeCCCCC---ccccCCccCHHHHHhhC
Confidence            999999999988542   56899999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.70  E-value=3.5e-17  Score=133.37  Aligned_cols=84  Identities=13%  Similarity=0.279  Sum_probs=74.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc-cchhhhHHHhhCCCCccccccCccEEEEeCCCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS  229 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~  229 (423)
                      ..+++++|.||||||++|+.+.|.|+++++.+.+ +.+++||++ ++   ..++++++      |+++||+++|.+| . 
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~---~~l~~~~~------V~~~PT~~lf~~g-~-   83 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIK---PSLLSRYG------VVGFPTILLFNST-P-   83 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCC---HHHHHhcC------CeecCEEEEEcCC-c-
Confidence            4689999999999999999999999999999876 678889987 33   45999999      9999999999988 3 


Q ss_pred             CCCcccccCCCCHHHHHHHH
Q 014549          230 SDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       230 ~~~~~~y~G~~~~~~l~~fi  249 (423)
                         ...|.|.++.++|++|+
T Consensus        84 ---~~~~~G~~~~~~l~~f~  100 (100)
T cd02999          84 ---RVRYNGTRTLDSLAAFY  100 (100)
T ss_pred             ---eeEecCCCCHHHHHhhC
Confidence               46899999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.5e-17  Score=154.36  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=95.1

Q ss_pred             eeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|.++|..||...|   +...|+||.||+|||++|+++.|..++++.+.+|.+++++|||+   .++.++.+||      
T Consensus        24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D---~~p~vAaqfg------   94 (304)
T COG3118          24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD---AEPMVAAQFG------   94 (304)
T ss_pred             cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC---cchhHHHHhC------
Confidence            37999999999877   44569999999999999999999999999999999999999999   5566999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |++.||+++|.+|+.    ...|.|....+.|.+|+.+.
T Consensus        95 iqsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~  129 (304)
T COG3118          95 VQSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV  129 (304)
T ss_pred             cCcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence            999999999999987    57899999999999999988

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.70  E-value=5.6e-17  Score=135.40  Aligned_cols=103  Identities=24%  Similarity=0.420  Sum_probs=85.7

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      |++|+.++|++.+ +++++++|.||+|||++|+.+.|.|+++++.+++   .+.++.|||+.+. ...+|++++      
T Consensus         3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~------   75 (114)
T cd02992           3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFG------   75 (114)
T ss_pred             eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCC------
Confidence            7899999999988 4457999999999999999999999999999864   4799999997442 456999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCC-CCHHHHHH
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTD  247 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~  247 (423)
                      |+++||+++|++|.........|+|. |..+.+.+
T Consensus        76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02992          76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE  110 (114)
T ss_pred             CCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence            99999999999997643344678876 76666643

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.70  E-value=1.6e-17  Score=167.56  Aligned_cols=68  Identities=28%  Similarity=0.473  Sum_probs=64.1

Q ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ...|||++|||+++||.+|||+|||+||++||||+++ +.++|++|++||++|+||++|+.||.||+.+
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~   93 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEG   93 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence            3679999999999999999999999999999999985 5789999999999999999999999999864

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=4.8e-17  Score=144.79  Aligned_cols=92  Identities=23%  Similarity=0.311  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC------cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHH
Q 014549           13 YWAPLILFGLGLFYQLVVLPRSF------PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYA   83 (423)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~------~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~A   83 (423)
                      .+..+.+.++|+++++++.-.+.      .-|||+|||++++++.+|||+|||+|++++||||++   +.++.|..|.+|
T Consensus        69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA  148 (230)
T KOG0721|consen   69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA  148 (230)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence            44566667777765554433322      669999999999999999999999999999999985   467789999999


Q ss_pred             HHHcCChhhHhhhhhcCCchh
Q 014549           84 YELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        84 y~~L~~~~~r~~yd~~~~~~~  104 (423)
                      |+.|+|+..|++|+.||+.++
T Consensus       149 Y~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen  149 YQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             HHHhcchhhHHHHHHhCCCCC
Confidence            999999999999999998653

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.69  E-value=3.9e-17  Score=165.47  Aligned_cols=107  Identities=11%  Similarity=0.289  Sum_probs=91.8

Q ss_pred             cceeeEeccCCcccccC---CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCc
Q 014549          135 VHAFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~---~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      ...|++||..||+++|.   .+++|||.||||||++|+.+.|.|+++|+++.+. +.|++|||+.+.. ..++++++   
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-~~~~~~~~---  425 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-EFAKQELQ---  425 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-HHHHHHcC---
Confidence            34689999999999884   7899999999999999999999999999999876 7999999995421 22357888   


Q ss_pred             cccccCccEEEEeCCCCCCCCCccccc-CCCCHHHHHHHHHH
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT  251 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~-G~~~~~~l~~fi~~  251 (423)
                         |+++|||++|++|...   +..|. |.|+.++|+.|+..
T Consensus       426 ---I~~~PTii~Fk~g~~~---~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       426 ---LGSFPTILFFPKHSSR---PIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             ---CCccceEEEEECCCCC---ceeCCCCCCCHHHHHHHHHh
Confidence               9999999999999643   56898 58999999999964

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.2e-17  Score=165.05  Aligned_cols=68  Identities=32%  Similarity=0.549  Sum_probs=63.7

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+++   .+.++|++|++||++|+||++|+.||+||+.+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            469999999999999999999999999999999986   36789999999999999999999999999865

>PRK09381 trxA thioredoxin; Provisional

Probab=99.69  E-value=7.5e-17  Score=133.31  Aligned_cols=103  Identities=17%  Similarity=0.266  Sum_probs=91.0

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|++++.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+.   ...++++++      |+
T Consensus         4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~------v~   74 (109)
T PRK09381          4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYG------IR   74 (109)
T ss_pred             cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCC------CC
Confidence            37889999999754 778899999999999999999999999999998889999999994   455899999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|+.    ...+.|..+.+.|..|+.+.
T Consensus        75 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~  107 (109)
T PRK09381         75 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  107 (109)
T ss_pred             cCCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence            9999999998865    34677999999999999775

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.1e-17  Score=166.18  Aligned_cols=67  Identities=24%  Similarity=0.409  Sum_probs=62.9

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||++|+.||+||+.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~   77 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL   77 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence            4799999999999999999999999999999999873   568899999999999999999999999864

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=3.9e-17  Score=163.16  Aligned_cols=68  Identities=31%  Similarity=0.592  Sum_probs=63.7

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+  .+.++|++|++||++|+||++|+.||+||+.+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~   72 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD   72 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence            469999999999999999999999999999999986  46789999999999999999999999999864

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.68  E-value=1.5e-15  Score=140.99  Aligned_cols=195  Identities=11%  Similarity=0.092  Sum_probs=127.1

Q ss_pred             CcccccCCCCcEEEEEec---CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          145 DFPSIFHDSKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYa---pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      .|.+.+.+ ...++.|++   +||++|+.+.|.++++|+.+.+. +.+..+|.+   ...+++++|+      |.++||+
T Consensus        12 ~~~~~~~~-~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~---~~~~l~~~~~------V~~~Pt~   81 (215)
T TIGR02187        12 LFLKELKN-PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP---EDKEEAEKYG------VERVPTT   81 (215)
T ss_pred             HHHHhcCC-CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc---ccHHHHHHcC------CCccCEE
Confidence            33333433 444677988   99999999999999999998542 345555555   3556999999      9999999


Q ss_pred             EEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEE-EEecC-CCCC--chHH
Q 014549          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKT-GERA--SPFV  296 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl-~f~~~-~~~~--~~~~  296 (423)
                      ++|.+|...   ...|.|..+.+.+.+|+.......+....++... .+. ++..+ +.+.|+ |+++. ..|.  .+.+
T Consensus        82 ~~f~~g~~~---~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~-~~~-l~~~~-~pv~I~~F~a~~C~~C~~~~~~l  155 (215)
T TIGR02187        82 IILEEGKDG---GIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKT-VEL-LQSLD-EPVRIEVFVTPTCPYCPYAVLMA  155 (215)
T ss_pred             EEEeCCeee---EEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHH-HHH-HHhcC-CCcEEEEEECCCCCCcHHHHHHH
Confidence            999998652   2478899888999999976621111111132211 222 22222 123344 55542 2332  3445


Q ss_pred             HHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          297 RQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       297 ~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..++..+ ..+.+..+...  ..++++++|+|.+.||+++++++.    .+.|..+.+.|.+||..
T Consensus       156 ~~l~~~~-~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       156 HKFALAN-DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             HHHHHhc-CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence            5555553 34555554422  247899999999999999986542    26788888899999864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.67  E-value=2.1e-16  Score=129.66  Aligned_cols=94  Identities=16%  Similarity=0.385  Sum_probs=80.5

Q ss_pred             CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      ++|+++ .++++++|.||+|||++|+.+.|.|+++++.+++   .+.++.+||+   ....+|++++      |+++||+
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------I~~~Pt~   76 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---AYSSIASEFG------VRGYPTI   76 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---cCHhHHhhcC------CccccEE
Confidence            677764 4577999999999999999999999999999854   3789999999   4456999999      9999999


Q ss_pred             EEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++|.+|.     ...|.|.++.+.|.+|+.+.
T Consensus        77 ~l~~~~~-----~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          77 KLLKGDL-----AYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             EEEcCCC-----ceeecCCCCHHHHHHHHHhh
Confidence            9997663     34789999999999999764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PHA02278 thioredoxin-like protein

Probab=99.67  E-value=7.6e-17  Score=131.76  Aligned_cols=95  Identities=9%  Similarity=0.127  Sum_probs=81.1

Q ss_pred             CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEE
Q 014549          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++|.+.+.++++++|.|||||||+|+.++|.++++++.+.+.+.|..||.++++. ...++++++      |+++||+++
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i~   78 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLIG   78 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEEE
Confidence            4677888889999999999999999999999999998876667899999995421 245999999      999999999


Q ss_pred             eCCCCCCCCCcccccCCCCHHHHHHH
Q 014549          223 FPPGCKSSDCMTRFEGELSVDAVTDW  248 (423)
Q Consensus       223 f~~g~~~~~~~~~y~G~~~~~~l~~f  248 (423)
                      |++|+.    .....|..+.+.|.++
T Consensus        79 fk~G~~----v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         79 YKDGQL----VKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EECCEE----EEEEeCCCCHHHHHhh
Confidence            999976    4577898888888775

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=5.8e-17  Score=162.11  Aligned_cols=68  Identities=29%  Similarity=0.524  Sum_probs=63.8

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+++  .+.++|++|++||++|+||++|+.||+||+.+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG   73 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence            469999999999999999999999999999999986  46789999999999999999999999999864

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.67  E-value=1e-16  Score=129.10  Aligned_cols=98  Identities=22%  Similarity=0.459  Sum_probs=86.9

Q ss_pred             EeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHh--hccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       140 ~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l--~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      +||.++|.+.+.+.++++|.||++||++|+.+.|.|+++++.+  .+.+.++.|||+   ....+|++++      |+++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------i~~~   72 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT---ANNDLCSEYG------VRGY   72 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc---chHHHHHhCC------CCCC
Confidence            5788899999977779999999999999999999999999999  467899999999   4556999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      ||+++|.++...   ...|.|..+.+.|.+|+
T Consensus        73 Pt~~~~~~~~~~---~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          73 PTIKLFPNGSKE---PVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CEEEEEcCCCcc---cccCCCCcCHHHHHhhC
Confidence            999999988332   56899999999999884

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=6.6e-17  Score=162.12  Aligned_cols=68  Identities=32%  Similarity=0.560  Sum_probs=64.0

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+++  .+.++|++|++||++|+||++|+.||+||+.+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~   72 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG   72 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence            469999999999999999999999999999999986  47789999999999999999999999999865

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=7e-17  Score=161.92  Aligned_cols=68  Identities=25%  Similarity=0.479  Sum_probs=64.2

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+  .+.++|++|++||++|+||.+|+.||+||+.+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            569999999999999999999999999999999986  57789999999999999999999999999764

>PLN02309 5'-adenylylsulfate reductase

Probab=99.66  E-value=1.4e-16  Score=161.37  Aligned_cols=107  Identities=14%  Similarity=0.396  Sum_probs=92.5

Q ss_pred             CcceeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc-cchhhhHHHh-hCC
Q 014549          134 SVHAFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKP  207 (423)
Q Consensus       134 ~~~~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~-~~~~~~~l~~-~~~  207 (423)
                      +...|++|+.+||++++   +.+++|||.||||||++|+.+.|.|+++|+.+.+. +.|++|||+ .+.   .+|+ +++
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~  419 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQ  419 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCC
Confidence            33468999999999887   57899999999999999999999999999999876 899999999 433   4775 588


Q ss_pred             CCccccccCccEEEEeCCCCCCCCCcccccC-CCCHHHHHHHHHHh
Q 014549          208 IGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA  252 (423)
Q Consensus       208 ~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G-~~~~~~l~~fi~~~  252 (423)
                            |++||||++|++|...   +..|.| .|+.++|+.|+...
T Consensus       420 ------I~~~PTil~f~~g~~~---~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        420 ------LGSFPTILLFPKNSSR---PIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             ------CceeeEEEEEeCCCCC---eeecCCCCcCHHHHHHHHHHh
Confidence                  9999999999998653   678985 79999999999753

>PRK10996 thioredoxin 2; Provisional

Probab=99.66  E-value=1.9e-16  Score=136.91  Aligned_cols=102  Identities=20%  Similarity=0.337  Sum_probs=92.6

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      +++++..+|+++++++++++|.||++||++|+.+.|.++++++++.+.+.+++||++   ....++++++      |+++
T Consensus        37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~---~~~~l~~~~~------V~~~  107 (139)
T PRK10996         37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE---AERELSARFR------IRSI  107 (139)
T ss_pred             CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC---CCHHHHHhcC------CCcc
Confidence            688999999999988999999999999999999999999999999888999999999   4456999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|.+|+.    ...+.|..+.+.|.+|+.+.
T Consensus       108 Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        108 PTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             CEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence            99999998875    45778999999999999765

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=9.8e-17  Score=160.37  Aligned_cols=68  Identities=29%  Similarity=0.583  Sum_probs=63.3

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++    +.++|++|++||++|+||++|+.||+||..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            4699999999999999999999999999999999863    4678999999999999999999999999764

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=8.5e-17  Score=160.37  Aligned_cols=68  Identities=26%  Similarity=0.445  Sum_probs=63.4

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+|+++||||++++   +.++|++|++||++|+||.+|..||+||+.+
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~   72 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA   72 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence            3699999999999999999999999999999999873   5678999999999999999999999999864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.1e-16  Score=160.28  Aligned_cols=68  Identities=29%  Similarity=0.516  Sum_probs=64.0

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||+||+.+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            369999999999999999999999999999999986  47789999999999999999999999999865

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.2e-16  Score=154.63  Aligned_cols=68  Identities=29%  Similarity=0.536  Sum_probs=63.8

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++||.+|||+|||+||++||||+++  .+.++|++|++||++|+||++|+.||+||..+
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            469999999999999999999999999999999986  46789999999999999999999999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.3e-16  Score=160.16  Aligned_cols=68  Identities=26%  Similarity=0.536  Sum_probs=63.9

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+|+  .+.++|++|++||++|+||.+|+.||.||+.+
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            469999999999999999999999999999999986  46789999999999999999999999999864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.4e-16  Score=159.12  Aligned_cols=68  Identities=29%  Similarity=0.502  Sum_probs=63.7

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||.+|+.||+||+.+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            4799999999999999999999999999999999873   5678999999999999999999999999864

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.1e-16  Score=147.20  Aligned_cols=70  Identities=30%  Similarity=0.501  Sum_probs=64.8

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~  105 (423)
                      ..|+|+|||++++|+.++|||+||+|+++||||++++   +.++|++|++||+||+||.+|..||+||+.+..
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~  102 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK  102 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence            4579999999999999999999999999999999874   788999999999999999999999999887643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.5e-16  Score=159.39  Aligned_cols=66  Identities=29%  Similarity=0.430  Sum_probs=62.6

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      .|||++|||+++|+.+|||+|||+||++||||++++  +.++|++|++||++|+||++|+.||+||+.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            699999999999999999999999999999999874  667899999999999999999999999975

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=5.3e-17  Score=158.56  Aligned_cols=70  Identities=26%  Similarity=0.404  Sum_probs=63.8

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      ++....||++|||.++|+..+||++||+||++||||+||+    +.+.|+.|+.||+|||||..|..||.+.++
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq   77 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ   77 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence            3446789999999999999999999999999999999883    677899999999999999999999997653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.6e-16  Score=159.67  Aligned_cols=68  Identities=28%  Similarity=0.556  Sum_probs=63.4

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||.+|+.||.||+.+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   74 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA   74 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence            3699999999999999999999999999999999873   5678999999999999999999999999764

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.5e-16  Score=158.98  Aligned_cols=68  Identities=25%  Similarity=0.464  Sum_probs=63.5

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||.+|+.||+||+.+
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g   73 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG   73 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence            4699999999999999999999999999999999873   5678999999999999999999999999864

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.6e-16  Score=159.44  Aligned_cols=68  Identities=28%  Similarity=0.562  Sum_probs=63.5

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||.+|+.||+||+.+
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            3699999999999999999999999999999999873   5678999999999999999999999999864

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.64  E-value=3.6e-16  Score=128.14  Aligned_cols=96  Identities=11%  Similarity=0.064  Sum_probs=79.6

Q ss_pred             cCCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       143 ~~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      .++|++.|.  .+++++|.|||+||++|+.+.|.++++++.+ +.+.|+.||++++.....++++++      |+++||+
T Consensus         3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~   75 (103)
T cd02985           3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF   75 (103)
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence            456777773  3899999999999999999999999999998 568999999997654457999999      9999999


Q ss_pred             EEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~  250 (423)
                      ++|++|+.    ...+.|. ..+.|..-+.
T Consensus        76 ~~~~~G~~----v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          76 LFYKDGEK----IHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             EEEeCCeE----EEEEeCC-CHHHHHHHHH
Confidence            99999876    4577784 4566666554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=2.3e-16  Score=158.73  Aligned_cols=67  Identities=31%  Similarity=0.548  Sum_probs=62.8

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||++|+.||+||+.+
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            389999999999999999999999999999999873   5778999999999999999999999999864

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.63  E-value=3.5e-16  Score=116.67  Aligned_cols=60  Identities=35%  Similarity=0.697  Sum_probs=56.7

Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCChhhHhhhh
Q 014549           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD   97 (423)
Q Consensus        38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~----~~f~~i~~Ay~~L~~~~~r~~yd   97 (423)
                      |||++|||+++++.++||++|+++++++|||++++..    +.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987544    78999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=3.6e-16  Score=157.04  Aligned_cols=68  Identities=24%  Similarity=0.488  Sum_probs=63.1

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhh----cCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDV----YGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~----~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||+++   .+.++|++|++||++|+||.+|+.||+    ||+.+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g   82 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGG   82 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccc
Confidence            469999999999999999999999999999999986   366889999999999999999999999    88754

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=4e-16  Score=157.20  Aligned_cols=67  Identities=25%  Similarity=0.519  Sum_probs=63.0

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .|||++|||+++|+.+|||+|||+|+++||||++++   +.++|++|++||++|+||.+|+.||.||+.+
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~   72 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG   72 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence            699999999999999999999999999999999873   5678999999999999999999999999864

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=4.7e-16  Score=155.76  Aligned_cols=68  Identities=31%  Similarity=0.575  Sum_probs=63.4

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||.+|+.||.||+.+
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~   73 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA   73 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence            4699999999999999999999999999999999863   5678999999999999999999999999764

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.61  E-value=3.1e-16  Score=129.49  Aligned_cols=76  Identities=14%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549          144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       144 ~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      ++|++.+.  ++++++|.|||+||++|+.|.|.++++|.++.+.+.|++||++   ..++++++++      |.+.||++
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD---~~~~la~~~~------V~~iPTf~   73 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID---EVPDFNKMYE------LYDPPTVM   73 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC---CCHHHHHHcC------CCCCCEEE
Confidence            45666663  6789999999999999999999999999999988999999999   4556999999      99999999


Q ss_pred             EeCCCCC
Q 014549          222 AFPPGCK  228 (423)
Q Consensus       222 ~f~~g~~  228 (423)
                      +|++|+.
T Consensus        74 ~fk~G~~   80 (114)
T cd02954          74 FFFRNKH   80 (114)
T ss_pred             EEECCEE
Confidence            9999976

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=6e-16  Score=148.67  Aligned_cols=68  Identities=28%  Similarity=0.601  Sum_probs=63.9

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+..|||+||++||++||||.|.  ++.++|++|.+|||+|+|+++|..||.+|..+
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            449999999999999999999999999999999876  58889999999999999999999999998875

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.61  E-value=1.5e-15  Score=124.47  Aligned_cols=96  Identities=15%  Similarity=0.103  Sum_probs=85.5

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCC--CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapw--C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .-++|..||++.+..+...+|.||++|  |++|+.+.|.++++|+++.+.+.|++||+++   ++.++.+|+      |+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~------V~   82 (111)
T cd02965          12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFG------VL   82 (111)
T ss_pred             CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcC------CC
Confidence            356899999999999999999999997  9999999999999999999999999999994   456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHH
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVT  246 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~  246 (423)
                      ++||+++|++|+.    ...+.|..+.+.+.
T Consensus        83 sIPTli~fkdGk~----v~~~~G~~~~~e~~  109 (111)
T cd02965          83 RTPALLFFRDGRY----VGVLAGIRDWDEYV  109 (111)
T ss_pred             cCCEEEEEECCEE----EEEEeCccCHHHHh
Confidence            9999999999976    45677888776654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.60  E-value=1.2e-15  Score=133.17  Aligned_cols=90  Identities=16%  Similarity=0.352  Sum_probs=75.7

Q ss_pred             ceeeEeccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +.|.+++.++|++.+  +.+.+|+|.||+|||++|+.+.|.|+++|+++++. +.|++|||+   ...++|+++++...+
T Consensus        28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd---~~~~la~~~~V~~~~  104 (152)
T cd02962          28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG---RFPNVAEKFRVSTSP  104 (152)
T ss_pred             CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC---CCHHHHHHcCceecC
Confidence            457889999999887  33579999999999999999999999999999864 899999999   455699999944333


Q ss_pred             cccCccEEEEeCCCCC
Q 014549          213 FRRGLPSLVAFPPGCK  228 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~  228 (423)
                      .++++||+++|++|+.
T Consensus       105 ~v~~~PT~ilf~~Gk~  120 (152)
T cd02962         105 LSKQLPTIILFQGGKE  120 (152)
T ss_pred             CcCCCCEEEEEECCEE
Confidence            3444999999999876

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=8.8e-16  Score=137.82  Aligned_cols=70  Identities=23%  Similarity=0.409  Sum_probs=64.5

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC-----ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~-----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      +...|+|+||||.++|+..+||+|||+|+++||||+++     .+.++|++|+.||+||+|.++|+.||.-|...
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            44679999999999999999999999999999999985     46778999999999999999999999988755

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1e-15  Score=152.83  Aligned_cols=67  Identities=31%  Similarity=0.578  Sum_probs=62.8

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .|||++|||+++|+.+|||+|||+|+++||||++++    +.++|++|++||++|+||.+|+.||.||+.+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~   73 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD   73 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence            699999999999999999999999999999999863    4578999999999999999999999999864

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.59  E-value=5.7e-16  Score=163.83  Aligned_cols=70  Identities=26%  Similarity=0.396  Sum_probs=65.0

Q ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      ...+||++|||+++|+..+||+|||+||++||||++++  +.++|+.|.+||++|+||.+|+.||.||..+.
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            36799999999999999999999999999999999873  66789999999999999999999999998763

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.1e-15  Score=152.97  Aligned_cols=67  Identities=27%  Similarity=0.482  Sum_probs=63.0

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .|||++|||+++||.+|||+|||+|+++||||+++  .+.++|++|++||++|+|+.+|+.||+||+.+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            69999999999999999999999999999999986  46779999999999999999999999999764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.59  E-value=1.3e-15  Score=144.39  Aligned_cols=71  Identities=31%  Similarity=0.516  Sum_probs=63.1

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      .|..+|||+||||.++|+..||.+|||++|++||||.-.+      +..+|..|..|-+||+||++|+.||+ |++..
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPL  466 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPL  466 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCC
Confidence            4668999999999999999999999999999999997652      55679999999999999999999998 55543

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.59  E-value=2e-15  Score=123.46  Aligned_cols=96  Identities=13%  Similarity=0.189  Sum_probs=81.1

Q ss_pred             eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCccE
Q 014549          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      -|.++|+++++++++++|.||||||++|+.+.|.++++++.+++. +.|+.+|++ +   .+++++++      |+++||
T Consensus         5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~~~~~~~------v~~~Pt   74 (102)
T cd02948           5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---IDTLKRYR------GKCEPT   74 (102)
T ss_pred             cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HHHHHHcC------CCcCcE
Confidence            466788888888999999999999999999999999999999854 689999998 2   34899999      999999


Q ss_pred             EEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       220 i~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      +++|++|+.    .....|. +.+.|.+++.+
T Consensus        75 ~~~~~~g~~----~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          75 FLFYKNGEL----VAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             EEEEECCEE----EEEEecC-ChHHHHHHHhh
Confidence            999998865    3345564 77888888754

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.2e-15  Score=145.40  Aligned_cols=69  Identities=25%  Similarity=0.396  Sum_probs=64.6

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      ..|||++||++.+++..+|++|||+++++||||+||+   +.++|+.|.+||+||+|+..|..||.+|..+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~   75 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS   75 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence            5699999999999999999999999999999999984   67789999999999999999999999987763

>TIGR01068 thioredoxin thioredoxin

Probab=99.58  E-value=3e-15  Score=121.09  Aligned_cols=98  Identities=19%  Similarity=0.301  Sum_probs=84.6

Q ss_pred             ccCCcccccCC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          142 TSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       142 ~~~nf~~~v~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      +.++|.+.+.+ +++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+   ....++++++      |.++||+
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------v~~~P~~   72 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD---ENPDIAAKYG------IRSIPTL   72 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC---CCHHHHHHcC------CCcCCEE
Confidence            45677777744 569999999999999999999999999999888999999999   4456899999      9999999


Q ss_pred             EEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++|.+|+.    ...+.|..+.+.|.+|+.+.
T Consensus        73 ~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        73 LLFKNGKE----VDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             EEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence            99988865    34677999999999999765

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.58  E-value=1.4e-15  Score=151.48  Aligned_cols=66  Identities=32%  Similarity=0.587  Sum_probs=62.5

Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      |||++|||+++|+.+|||+|||+||++||||+++  .+.++|++|++||++|+|+.+|+.||.||+.+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            7999999999999999999999999999999985  46789999999999999999999999999865

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.1e-15  Score=149.39  Aligned_cols=70  Identities=29%  Similarity=0.475  Sum_probs=64.4

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~------~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~  105 (423)
                      +.|+|.+|||+++|+.+|||+|||++++.+|||+..      .+++.|+.|..|||||+||.+|..||.||+.+..
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            458999999999999999999999999999999864      2567799999999999999999999999998754

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.7e-15  Score=151.65  Aligned_cols=68  Identities=26%  Similarity=0.524  Sum_probs=63.6

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+|+++||||+++  .+.++|.+|++||++|+||.+|+.||.||+.+
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g   71 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG   71 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence            359999999999999999999999999999999986  47789999999999999999999999999764

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.7e-15  Score=152.39  Aligned_cols=68  Identities=25%  Similarity=0.504  Sum_probs=63.4

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|||++|||+++|+.+|||+|||+||++||||++++   +.++|++|++||++|+||.+|+.||.||+.+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            4699999999999999999999999999999999873   5678999999999999999999999999764

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.57  E-value=2.4e-15  Score=125.31  Aligned_cols=82  Identities=16%  Similarity=0.229  Sum_probs=73.0

Q ss_pred             ceeeEeccCCcccccCCC---CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~---~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      ..|.++++++|.+.|.+.   .+++|.||+|||++|+.+.|.++++|+.+.+ +.|++||+++   . .++++++     
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~-----   73 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLD-----   73 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcC-----
Confidence            447889999999888443   8999999999999999999999999999865 7899999993   3 6999999     


Q ss_pred             cccCccEEEEeCCCCC
Q 014549          213 FRRGLPSLVAFPPGCK  228 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~  228 (423)
                       |+++||+++|++|+.
T Consensus        74 -i~~~Pt~~~f~~G~~   88 (113)
T cd02957          74 -IKVLPTLLVYKNGEL   88 (113)
T ss_pred             -CCcCCEEEEEECCEE
Confidence             999999999999976

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2e-15  Score=151.22  Aligned_cols=67  Identities=27%  Similarity=0.522  Sum_probs=63.1

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .|||++|||+++|+.++||+|||+|+++||||++++  +.++|.+|++||++|+||.+|+.||.||+.+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            499999999999999999999999999999999863  6789999999999999999999999999864

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.56  E-value=3.3e-15  Score=145.75  Aligned_cols=66  Identities=24%  Similarity=0.471  Sum_probs=62.2

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      .|||++|||+++|+.+|||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||.+|..
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~   71 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH   71 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence            59999999999999999999999999999999985  4778999999999999999999999999854

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.55  E-value=8.8e-15  Score=119.89  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=81.4

Q ss_pred             CCcccccCCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccE
Q 014549          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      ++|++.++++++++|.||++||++|+.+.|.+   +++++.+.+.+.++.||++++.. ...++++++      |.++||
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt   75 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT   75 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence            35677778899999999999999999999999   68888888778999999984322 467999999      999999


Q ss_pred             EEEeCC--CCCCCCCcccccCCCCHHHHHHHH
Q 014549          220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       220 i~~f~~--g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      +++|.+  |+.    +..+.|..+.++|.+++
T Consensus        76 i~~~~~~~g~~----~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          76 YLFYGPGGEPE----PLRLPGFLTADEFLEAL  103 (104)
T ss_pred             EEEECCCCCCC----CcccccccCHHHHHHHh
Confidence            999985  443    56788999999998886

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.55  E-value=8.9e-15  Score=151.68  Aligned_cols=106  Identities=14%  Similarity=0.245  Sum_probs=93.6

Q ss_pred             cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      ...|..|+.++|++.+ +++++++|.||||||++|+.+.|.|+++|+.+++  .+.++.+||+.+   ..+|++++    
T Consensus       356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~---~~~~~~~~----  428 (477)
T PTZ00102        356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN---ETPLEEFS----  428 (477)
T ss_pred             CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC---ccchhcCC----
Confidence            3458899999999885 7889999999999999999999999999999875  478999999944   44788888    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |+++||+++|++|+..   +..|.|.++.++|.+|+.+.
T Consensus       429 --v~~~Pt~~~~~~~~~~---~~~~~G~~~~~~l~~~i~~~  464 (477)
T PTZ00102        429 --WSAFPTILFVKAGERT---PIPYEGERTVEGFKEFVNKH  464 (477)
T ss_pred             --CcccCeEEEEECCCcc---eeEecCcCCHHHHHHHHHHc
Confidence              9999999999998653   55799999999999999988

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.52  E-value=1.6e-14  Score=120.40  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             eeEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +.++++ ++|.+.+.++.+++|.||+|||++|+.+.|.++++++++.+ ++|.+||++   ....++++++      |.+
T Consensus         6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~---~~~~l~~~~~------v~~   75 (113)
T cd02989           6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAE---KAPFLVEKLN------IKV   75 (113)
T ss_pred             eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcc---cCHHHHHHCC------Ccc
Confidence            677887 88999998889999999999999999999999999998765 799999999   4556999999      999


Q ss_pred             ccEEEEeCCCCC
Q 014549          217 LPSLVAFPPGCK  228 (423)
Q Consensus       217 ~Pti~~f~~g~~  228 (423)
                      +||+++|++|+.
T Consensus        76 vPt~l~fk~G~~   87 (113)
T cd02989          76 LPTVILFKNGKT   87 (113)
T ss_pred             CCEEEEEECCEE
Confidence            999999999975

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.8e-14  Score=130.76  Aligned_cols=87  Identities=26%  Similarity=0.351  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCCh
Q 014549           13 YWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDP   90 (423)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~   90 (423)
                      .|+.+++++.++++.++--.=++.+|+|+||||++.++..||.+|||+||+++|||++++  ..+.|+.|..||++|.|.
T Consensus         9 w~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~   88 (329)
T KOG0722|consen    9 WCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDN   88 (329)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccch
Confidence            344444444444444433344779999999999999999999999999999999998764  445699999999999999


Q ss_pred             hhHhhhhhc
Q 014549           91 LWKRNYDVY   99 (423)
Q Consensus        91 ~~r~~yd~~   99 (423)
                      +.|..||-.
T Consensus        89 e~rt~ydya   97 (329)
T KOG0722|consen   89 ETRTQYDYA   97 (329)
T ss_pred             hhHHhHHHH
Confidence            999999965

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.51  E-value=6e-14  Score=121.70  Aligned_cols=101  Identities=15%  Similarity=0.198  Sum_probs=83.9

Q ss_pred             cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       143 ~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ...|++.+..+++++|.|||+||++|+.+.|.++++++.+.+.+.|..||.+.+. ...++++|+      |.++||+++
T Consensus        10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~------V~~iPt~v~   82 (142)
T cd02950          10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYR------VDGIPHFVF   82 (142)
T ss_pred             cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcC------CCCCCEEEE
Confidence            3467777788999999999999999999999999999999877888888877432 346889999      999999999


Q ss_pred             eC-CCCCCCCCcccccCCCCHHHHHHHHHHhhc
Q 014549          223 FP-PGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (423)
Q Consensus       223 f~-~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~  254 (423)
                      |. +|+.    ...+.|..+.+.|.+++.+.+.
T Consensus        83 ~~~~G~~----v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          83 LDREGNE----EGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             ECCCCCE----EEEEeCCCCHHHHHHHHHHHHc
Confidence            95 5654    4567799999999999987743

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.6e-14  Score=143.15  Aligned_cols=105  Identities=23%  Similarity=0.471  Sum_probs=93.5

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|.+|+..+|+..+ ..+..|+|.||+|||+||+.++|+|+++|..++  +.+.++.+||+   ....+|++++      
T Consensus       145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~------  215 (383)
T KOG0191|consen  145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLE------  215 (383)
T ss_pred             ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhc------
Confidence            47999999999877 778999999999999999999999999999996  45899999999   6677999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                      |++|||+++|++|..   ....|.|.|+.+.|+.|+.+..
T Consensus       216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~  252 (383)
T KOG0191|consen  216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKE  252 (383)
T ss_pred             ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhc
Confidence            999999999999875   1346679999999999998873

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.50  E-value=2.8e-14  Score=104.83  Aligned_cols=55  Identities=31%  Similarity=0.585  Sum_probs=51.2

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChh
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL   91 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~   91 (423)
                      .|||++|||+++++.++||++||++++++|||++++    +.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999874    6778999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.50  E-value=3.5e-14  Score=102.36  Aligned_cols=52  Identities=37%  Similarity=0.636  Sum_probs=49.2

Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCC
Q 014549           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD   89 (423)
Q Consensus        38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~   89 (423)
                      |||++|||+++++.++||++||++++++|||++++   +.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999875   67889999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.49  E-value=3.2e-14  Score=114.75  Aligned_cols=93  Identities=15%  Similarity=0.234  Sum_probs=76.2

Q ss_pred             cCCcccccCCC--CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          143 SEDFPSIFHDS--KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       143 ~~nf~~~v~~~--~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      .++|++.+.+.  ++++|.||+|||++|+++.|.++++++.+.+.+.+.++|++   ....++++++      |.++||+
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~---~~~~~~~~~~------i~~~Pt~   72 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE---ELPEISEKFE------ITAVPTF   72 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc---cCHHHHHhcC------CccccEE
Confidence            35677777544  99999999999999999999999999998667899999999   4556999999      9999999


Q ss_pred             EEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      ++|.+|+.    ...+.|. +.++|.+.+
T Consensus        73 ~~~~~g~~----~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          73 VFFRNGTI----VDRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEECCEE----EEEEeCC-CHHHHHHhh
Confidence            99998865    3345564 567776654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PHA03102 Small T antigen; Reviewed

Probab=99.49  E-value=2e-14  Score=124.22  Aligned_cols=68  Identities=10%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             ccccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549           37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL  105 (423)
Q Consensus        37 ~d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~  105 (423)
                      +..|++|||+++|  |..+||+|||++++++|||++ ++.++|++|++||++|+|+.+|..||.+|.+...
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~   74 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS   74 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence            4689999999999  999999999999999999997 5678999999999999999999999999987643

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.47  E-value=1.1e-13  Score=142.68  Aligned_cols=105  Identities=15%  Similarity=0.301  Sum_probs=91.5

Q ss_pred             cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCc
Q 014549          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      ...|..|+.++|++.+ ++++.++|.||+|||++|+.+.|.|+++|+.+.+   .+.|+.+||+.+.    ++. ++   
T Consensus       345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~---  416 (462)
T TIGR01130       345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE---  416 (462)
T ss_pred             CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC---
Confidence            3468899999999987 7789999999999999999999999999999998   5899999999553    333 66   


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |+++||+++|++|...  .+..|.|.++.++|++|+.+.
T Consensus       417 ---i~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~~l~~~  453 (462)
T TIGR01130       417 ---VEGFPTIKFVPAGKKS--EPVPYDGDRTLEDFSKFIAKH  453 (462)
T ss_pred             ---ccccCEEEEEeCCCCc--CceEecCcCCHHHHHHHHHhc
Confidence               9999999999988651  256899999999999999887

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.3e-13  Score=112.90  Aligned_cols=85  Identities=13%  Similarity=0.197  Sum_probs=72.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      .++++++|.|||+|||+|+.++|.++++|.++.+ +.|.+||+++   ..++|++++      |+..||+++|++|+.  
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~--   86 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEE--   86 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEE--
Confidence            4469999999999999999999999999999999 9999999996   567999999      999999999999976  


Q ss_pred             CCcccccCCCCHHHHHHHHH
Q 014549          231 DCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       231 ~~~~~y~G~~~~~~l~~fi~  250 (423)
                        ...+-|.. .+.+.+.+.
T Consensus        87 --~~~~vGa~-~~~l~~~i~  103 (106)
T KOG0907|consen   87 --VDEVVGAN-KAELEKKIA  103 (106)
T ss_pred             --EEEEecCC-HHHHHHHHH
Confidence              45666654 335555554

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.46  E-value=1.8e-13  Score=107.89  Aligned_cols=91  Identities=16%  Similarity=0.304  Sum_probs=79.4

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeC
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~  224 (423)
                      +|++.+..+++++|.||++||++|+.+.|.++++++. .+.+.++.+||+   ....++++++      +.++||+++|.
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~---~~~~~~~~~~------v~~~P~~~~~~   71 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVD---ENPELAEEYG------VRSIPTFLFFK   71 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECC---CChhHHHhcC------cccccEEEEEE
Confidence            5667776779999999999999999999999999988 667899999999   4456999999      89999999999


Q ss_pred             CCCCCCCCcccccCCCCHHHHHHHH
Q 014549          225 PGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       225 ~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      +|+.    ...+.|..+.+.|.+|+
T Consensus        72 ~g~~----~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          72 NGKE----VDRVVGADPKEELEEFL   92 (93)
T ss_pred             CCEE----EEEEecCCCHHHHHHHh
Confidence            8865    45778888889998886

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PTZ00051 thioredoxin; Provisional

Probab=99.46  E-value=7.6e-14  Score=112.80  Aligned_cols=92  Identities=16%  Similarity=0.298  Sum_probs=76.0

Q ss_pred             eEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          139 NVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       139 ~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      .++++ ++|.++++.+++++|.||++||++|+.+.|.|+++++.+.+ +.++.|||+   ....++++++      |.++
T Consensus         3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~---~~~~~~~~~~------v~~~   72 (98)
T PTZ00051          3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVD---ELSEVAEKEN------ITSM   72 (98)
T ss_pred             EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECc---chHHHHHHCC------Ccee
Confidence            44544 56888888899999999999999999999999999997654 789999999   4556999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHH
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAV  245 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l  245 (423)
                      ||+++|++|+.    ...+.|. ..++|
T Consensus        73 Pt~~~~~~g~~----~~~~~G~-~~~~~   95 (98)
T PTZ00051         73 PTFKVFKNGSV----VDTLLGA-NDEAL   95 (98)
T ss_pred             eEEEEEeCCeE----EEEEeCC-CHHHh
Confidence            99999998876    3466675 34544

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.45  E-value=2.8e-13  Score=109.55  Aligned_cols=86  Identities=12%  Similarity=0.157  Sum_probs=77.3

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      +.+++++|.||++||+.|+.+.|.++++++.+.+.+.++.+|++   ...+++++++      |.++||+++|.+|+.  
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d---~~~~l~~~~~------v~~vPt~~i~~~g~~--   79 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID---EDQEIAEAAG------IMGTPTVQFFKDKEL--   79 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC---CCHHHHHHCC------CeeccEEEEEECCeE--
Confidence            67889999999999999999999999999999888899999999   4456899999      999999999988765  


Q ss_pred             CCcccccCCCCHHHHHHHH
Q 014549          231 DCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       231 ~~~~~y~G~~~~~~l~~fi  249 (423)
                        ...+.|.++.+.|.+|+
T Consensus        80 --v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          80 --VKEISGVKMKSEYREFI   96 (97)
T ss_pred             --EEEEeCCccHHHHHHhh
Confidence              46788999999999886

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.44  E-value=1.7e-13  Score=117.59  Aligned_cols=98  Identities=11%  Similarity=0.052  Sum_probs=78.4

Q ss_pred             cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       143 ~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      ..+|++.|  ..+++++|.|||+||++|+.+.|.++++|+++.+.+.|.+||.+   +.++++++|+      |++.||+
T Consensus        11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVD---e~~dla~~y~------I~~~~t~   81 (142)
T PLN00410         11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT---EVPDFNTMYE------LYDPCTV   81 (142)
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECC---CCHHHHHHcC------ccCCCcE
Confidence            45677777  46789999999999999999999999999999999999999999   5566999999      9878666


Q ss_pred             E-EeCCCCCCCCCcccccC--------CCCHHHHHHHHHHh
Q 014549          221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFATA  252 (423)
Q Consensus       221 ~-~f~~g~~~~~~~~~y~G--------~~~~~~l~~fi~~~  252 (423)
                      + +|++|+..   .....|        ..+.++|++-+...
T Consensus        82 ~~ffk~g~~~---vd~~tG~~~k~~~~~~~k~~l~~~i~~~  119 (142)
T PLN00410         82 MFFFRNKHIM---IDLGTGNNNKINWALKDKQEFIDIVETV  119 (142)
T ss_pred             EEEEECCeEE---EEEecccccccccccCCHHHHHHHHHHH
Confidence            6 89988632   445556        45666666655443

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.43  E-value=1.5e-13  Score=142.64  Aligned_cols=67  Identities=28%  Similarity=0.537  Sum_probs=62.4

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .|||++|||+++|+..+||+|||+|++++|||+++  .+.++|++|++||++|+||.+|..||.||..+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            59999999999999999999999999999999986  45668999999999999999999999998754

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.38  E-value=1.1e-12  Score=109.27  Aligned_cols=95  Identities=12%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             cccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCC
Q 014549          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP  225 (423)
Q Consensus       146 f~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~  225 (423)
                      |.+.+.....++|.||++||++|+.+.|.+++++... +.+.+..||.++   .++++++|+      |+++||+++|.+
T Consensus        15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~---~~~l~~~~~------v~~vPt~~i~~~   84 (113)
T cd02975          15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE---DKEKAEKYG------VERVPTTIFLQD   84 (113)
T ss_pred             HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc---CHHHHHHcC------CCcCCEEEEEeC
Confidence            4444566777899999999999999999999999886 668999999994   456999999      999999999998


Q ss_pred             CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          226 GCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       226 g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |...  ....|.|..+...+.+|+...
T Consensus        85 g~~~--~~~~~~G~~~~~el~~~i~~i  109 (113)
T cd02975          85 GGKD--GGIRYYGLPAGYEFASLIEDI  109 (113)
T ss_pred             Ceec--ceEEEEecCchHHHHHHHHHH
Confidence            7542  123688988888999988764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.38  E-value=7.8e-13  Score=118.60  Aligned_cols=103  Identities=13%  Similarity=0.247  Sum_probs=80.3

Q ss_pred             eeeEecc-CCcccccCC---CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          137 AFNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       137 ~v~~L~~-~nf~~~v~~---~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      .|.+++. ++|.+.|..   +.+++|.||+|||+.|+.+.|.++++|+.+. .++|.+||+++   . .++.+|+     
T Consensus        63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~---~-~l~~~f~-----  132 (175)
T cd02987          63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASA---T-GASDEFD-----  132 (175)
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccc---h-hhHHhCC-----
Confidence            3788999 999988843   2499999999999999999999999999875 58999999994   3 6899999     


Q ss_pred             cccCccEEEEeCCCCCCCCCccccc----CCCCHHHHHHHHHH
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFE----GELSVDAVTDWFAT  251 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~----G~~~~~~l~~fi~~  251 (423)
                       |..+||+++|++|+.. ....-+.    +..+.++|..|+.+
T Consensus       133 -v~~vPTlllyk~G~~v-~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         133 -TDALPALLVYKGGELI-GNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             -CCCCCEEEEEECCEEE-EEEechHHhcCCCCCHHHHHHHHHh
Confidence             9999999999999752 1111111    24566666666544

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.37  E-value=6e-13  Score=109.17  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=67.9

Q ss_pred             CCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549          144 EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       144 ~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      +.|++.|  .++++++|.|+|+||++|+.+.|.++++|+++++.+.|.+||.+   +.++++++|+      |...||++
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD---ev~dva~~y~------I~amPtfv   73 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD---KVPVYTQYFD------ISYIPSTI   73 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc---ccHHHHHhcC------ceeCcEEE
Confidence            3455555  35899999999999999999999999999999887999999999   5567999999      98999999


Q ss_pred             EeCCCCCC
Q 014549          222 AFPPGCKS  229 (423)
Q Consensus       222 ~f~~g~~~  229 (423)
                      +|.+|+..
T Consensus        74 ffkngkh~   81 (114)
T cd02986          74 FFFNGQHM   81 (114)
T ss_pred             EEECCcEE
Confidence            99999763

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.37  E-value=1.2e-12  Score=110.36  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=83.2

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--------hhhHHHhhCCC
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPI  208 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--------~~~~l~~~~~~  208 (423)
                      .+..++.++|.+.+.+++..+|.|+++||++|+.+.|.+++++++  ..+.|..||.+.+.        ...++.+++++
T Consensus         7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i   84 (122)
T TIGR01295         7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI   84 (122)
T ss_pred             cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence            356788889999999999999999999999999999999999998  44678899987442        23356676651


Q ss_pred             CccccccCccEEEEeCCCCCCCCCcccccC-CCCHHHHHHHH
Q 014549          209 GQIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF  249 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G-~~~~~~l~~fi  249 (423)
                        ...|.++||+++|.+|+.    .....| ..+.++|.+|+
T Consensus        85 --~~~i~~~PT~v~~k~Gk~----v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        85 --PTSFMGTPTFVHITDGKQ----VSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             --cccCCCCCEEEEEeCCeE----EEEEeCCCCCHHHHHHHh
Confidence              122667999999999976    346667 55799998886

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.36  E-value=2e-12  Score=105.33  Aligned_cols=87  Identities=17%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc--CccEEEEeCC--CC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC  227 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~--~~Pti~~f~~--g~  227 (423)
                      .+.++++.||++||++|+.+.|.++++|+++++.+.|+.||++   ....+++.++      +.  ++|+++++..  |.
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~---~~~~~~~~~~------i~~~~~P~~~~~~~~~~~   81 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDAD---DFGRHLEYFG------LKEEDLPVIAIINLSDGK   81 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchH---hhHHHHHHcC------CChhhCCEEEEEeccccc
Confidence            3689999999999999999999999999999999999999999   4556999999      88  9999999998  44


Q ss_pred             CCCCCccccc-CCCCHHHHHHHHHHh
Q 014549          228 KSSDCMTRFE-GELSVDAVTDWFATA  252 (423)
Q Consensus       228 ~~~~~~~~y~-G~~~~~~l~~fi~~~  252 (423)
                      ..     .+. |..+.++|.+|+.+.
T Consensus        82 k~-----~~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          82 KY-----LMPEEELTAESLEEFVEDF  102 (103)
T ss_pred             cc-----CCCccccCHHHHHHHHHhh
Confidence            32     344 455899999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.6e-12  Score=120.36  Aligned_cols=65  Identities=34%  Similarity=0.620  Sum_probs=60.8

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcC
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYG  100 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~  100 (423)
                      ..|||++|||+++|+..|||+|||++++++|||+++.    +.++|..|++||++|+|+.+|..||..+
T Consensus         5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            4589999999999999999999999999999999884    4588999999999999999999999985

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.29  E-value=1.6e-11  Score=95.67  Aligned_cols=80  Identities=11%  Similarity=0.087  Sum_probs=68.8

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~  235 (423)
                      -+..||+|||++|+.+.|.++++++.+.+.+.+..||++   ...+++++++      ++++||+++  +|..      .
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~---~~~~~~~~~~------v~~vPt~~~--~g~~------~   64 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM---ENPQKAMEYG------IMAVPAIVI--NGDV------E   64 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc---cCHHHHHHcC------CccCCEEEE--CCEE------E
Confidence            467899999999999999999999999877899999998   4456889999      999999986  5532      6


Q ss_pred             ccCCCCHHHHHHHHHHh
Q 014549          236 FEGELSVDAVTDWFATA  252 (423)
Q Consensus       236 y~G~~~~~~l~~fi~~~  252 (423)
                      +.|..+.+.|.+++.+.
T Consensus        65 ~~G~~~~~~l~~~l~~~   81 (82)
T TIGR00411        65 FIGAPTKEELVEAIKKR   81 (82)
T ss_pred             EecCCCHHHHHHHHHhh
Confidence            88999999999988654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.28  E-value=8.2e-12  Score=113.53  Aligned_cols=98  Identities=13%  Similarity=0.241  Sum_probs=77.7

Q ss_pred             eeeEeccCCccccc-CC--CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~--~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|.+++..+|...| .+  +.+++|.||+|||+.|+.+.|.|+++|..+. .++|++||++   .   ++..|+      
T Consensus        83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------  149 (192)
T cd02988          83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------  149 (192)
T ss_pred             eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------
Confidence            37889999998766 33  3589999999999999999999999999985 4799999998   3   357788      


Q ss_pred             ccCccEEEEeCCCCCCCCCccccc------C-CCCHHHHHHHHHH
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFE------G-ELSVDAVTDWFAT  251 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~------G-~~~~~~l~~fi~~  251 (423)
                      |+++|||++|++|..    ...+.      | ..+.++|-.++.+
T Consensus       150 i~~lPTlliyk~G~~----v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         150 DKNLPTILVYRNGDI----VKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             CCCCCEEEEEECCEE----EEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            999999999999975    22333      2 4566666666543

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=7.6e-12  Score=114.02  Aligned_cols=102  Identities=17%  Similarity=0.236  Sum_probs=83.2

Q ss_pred             eeEec-cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVT-SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~-~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |++++ +++|+..+  ...+.++|.|||.|||+|++++|+|+.+|..+.+ ..|.+||.+   +-...+..+|      |
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd---~c~~taa~~g------V   72 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVD---ECRGTAATNG------V   72 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHH---HhhchhhhcC------c
Confidence            34444 46788887  4567999999999999999999999999999854 579999999   4445778888      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhc
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~  254 (423)
                      +..||+++|++|.+    ...+.|. ++..|.+-+.+++.
T Consensus        73 ~amPTFiff~ng~k----id~~qGA-d~~gLe~kv~~~~s  107 (288)
T KOG0908|consen   73 NAMPTFIFFRNGVK----IDQIQGA-DASGLEEKVAKYAS  107 (288)
T ss_pred             ccCceEEEEecCeE----eeeecCC-CHHHHHHHHHHHhc
Confidence            99999999999987    4577775 57888888887733

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=4.1e-12  Score=124.72  Aligned_cols=65  Identities=25%  Similarity=0.387  Sum_probs=61.3

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcC
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYG  100 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~  100 (423)
                      ..|+|.+|||++++|+++|||.||++|...|||||.  .+.|.|+.|+.||++|+|+++|+.||.--
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            679999999999999999999999999999999875  68889999999999999999999999753

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.25  E-value=1.3e-11  Score=104.53  Aligned_cols=97  Identities=18%  Similarity=0.294  Sum_probs=76.7

Q ss_pred             ccccCCC-CcEEEEEecCCCccccccHHHHH---HHHHHhhccceEEEEEcccch----------hhhHHHhhCCCCccc
Q 014549          147 PSIFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIF  212 (423)
Q Consensus       147 ~~~v~~~-~~~lV~FYapwC~~C~~~~p~~~---~~A~~l~~~~~~~~Vdc~~~~----------~~~~l~~~~~~~~~~  212 (423)
                      .+..+++ ++++|.||++||++|+++.|.+.   ++.+.+.+.+.+..||.+++.          ....++++++     
T Consensus         7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~-----   81 (125)
T cd02951           7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR-----   81 (125)
T ss_pred             HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC-----
Confidence            3445677 99999999999999999999885   566677666778889887431          1356899999     


Q ss_pred             cccCccEEEEeCCC-CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g-~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.++ +..   ...+.|..+.+.+.+++...
T Consensus        82 -v~~~Pt~~~~~~~gg~~---~~~~~G~~~~~~~~~~l~~~  118 (125)
T cd02951          82 -VRFTPTVIFLDPEGGKE---IARLPGYLPPDEFLAYLEYV  118 (125)
T ss_pred             -CccccEEEEEcCCCCce---eEEecCCCCHHHHHHHHHHH
Confidence             9999999999986 342   45678988888888888665

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.25  E-value=1.1e-11  Score=109.78  Aligned_cols=62  Identities=16%  Similarity=0.275  Sum_probs=55.3

Q ss_pred             ccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCChHH------HHHHHHHHHHHcCChhhHhhhhh
Q 014549           37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        37 ~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~~~~------~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      .|||++|||++.  ++..+|+++||++++++|||+..+..+      .+..|++||++|+||.+|..|+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            489999999987  789999999999999999999864333      37799999999999999999985

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=1.5e-11  Score=109.50  Aligned_cols=62  Identities=15%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             ccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        37 ~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      .|||++|||++.  ++..+||++||++++++|||+..+        +.+.+..|++||++|+||.+|..|+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            389999999996  678999999999999999998652        24468999999999999999999985

>PTZ00062 glutaredoxin; Provisional

Probab=99.20  E-value=2e-10  Score=104.89  Aligned_cols=162  Identities=8%  Similarity=-0.007  Sum_probs=103.4

Q ss_pred             cCCcccccCCC-CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549          143 SEDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       143 ~~nf~~~v~~~-~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      .++|.+.++++ ...++.|+|+||+.|+.+.|.++++++++. .+.|..||.+           ++      |.++||++
T Consensus         6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d-----------~~------V~~vPtfv   67 (204)
T PTZ00062          6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA-----------DA------NNEYGVFE   67 (204)
T ss_pred             HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc-----------cC------cccceEEE
Confidence            34566677543 778999999999999999999999999884 5899999976           46      99999999


Q ss_pred             EeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecC---CCCCchH-HH
Q 014549          222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT---GERASPF-VR  297 (423)
Q Consensus       222 ~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~---~~~~~~~-~~  297 (423)
                      +|++|+.    ..++.|. ++..|..++.+.....+..       ...+++...-...++++|....   ..|.... .+
T Consensus        68 ~~~~g~~----i~r~~G~-~~~~~~~~~~~~~~~~~~~-------~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k  135 (204)
T PTZ00062         68 FYQNSQL----INSLEGC-NTSTLVSFIRGWAQKGSSE-------DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVV  135 (204)
T ss_pred             EEECCEE----EeeeeCC-CHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHH
Confidence            9999976    4577776 4889999998873322211       1233333322223566655421   2333222 22


Q ss_pred             HHHHhccccceEEEEEcccccc--HHHHhhcCCCCCCeEEE
Q 014549          298 QISRNYWAYASFAFVLWREEES--SIWWNTFEVESAPAIVF  336 (423)
Q Consensus       298 ~~a~~~~~~~~f~~v~~~~~~~--~~l~~~f~v~~~Ptl~l  336 (423)
                      .+..+.  .+.+..+.+.+...  +.+.+.-|-.++|.|++
T Consensus       136 ~~L~~~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        136 NMLNSS--GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             HHHHHc--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence            222222  35555555443221  34455556566887765

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.20  E-value=3.4e-11  Score=107.06  Aligned_cols=65  Identities=15%  Similarity=0.310  Sum_probs=57.4

Q ss_pred             CCcccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           34 SFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      ++..|||++||+++.  .+..+|+++||++++++|||+..+        +.+.+..|++||++|+||.+|..|+.
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            356899999999987  567999999999999999999753        23569999999999999999999995

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.19  E-value=3.5e-11  Score=107.44  Aligned_cols=65  Identities=18%  Similarity=0.291  Sum_probs=56.1

Q ss_pred             CCcccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--h------HHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           34 SFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--~------~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      +...|||++|||++.  ++..+|+++||++++++|||+.+.  .      .+.+..|++||++|+||.+|..|..
T Consensus         3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            456799999999985  578999999999999999998752  1      2336899999999999999999995

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.19  E-value=2.5e-11  Score=118.55  Aligned_cols=68  Identities=31%  Similarity=0.482  Sum_probs=62.8

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .=|||+|||++.+++..+||++||+|+.++||||-+.        -++++.+|.+||+.|+|...|++|-+||+-+
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd  172 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD  172 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence            5599999999999999999999999999999998763        4677999999999999999999999999865

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.18  E-value=2.5e-11  Score=99.59  Aligned_cols=52  Identities=27%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT   88 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~   88 (423)
                      ..++|++|||+++++.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999985 77889999999999985

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.17  E-value=2.5e-11  Score=101.46  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=65.7

Q ss_pred             CCcccccCC--CCcEEEEEec-------CCCccccccHHHHHHHHHHhhccceEEEEEcccch----hhhHHHhhCCCCc
Q 014549          144 EDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQ  210 (423)
Q Consensus       144 ~nf~~~v~~--~~~~lV~FYa-------pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~----~~~~l~~~~~~~~  210 (423)
                      ++|.+.|.+  +++++|.|||       +||++|+.+.|.+++++.++.+.+.|.+||.++.+    ....+.++++   
T Consensus        10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~---   86 (119)
T cd02952          10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK---   86 (119)
T ss_pred             HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC---
Confidence            456666743  6899999999       99999999999999999999877899999997532    1346888888   


Q ss_pred             ccccc-CccEEEEeCCCCC
Q 014549          211 IFFRR-GLPSLVAFPPGCK  228 (423)
Q Consensus       211 ~~~i~-~~Pti~~f~~g~~  228 (423)
                         |+ ++||+++|..|+.
T Consensus        87 ---I~~~iPT~~~~~~~~~  102 (119)
T cd02952          87 ---LTTGVPTLLRWKTPQR  102 (119)
T ss_pred             ---cccCCCEEEEEcCCce
Confidence               98 9999999977653

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.09  E-value=6.4e-09  Score=93.52  Aligned_cols=170  Identities=14%  Similarity=0.237  Sum_probs=122.5

Q ss_pred             ccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCC-CCHHHHHHH
Q 014549          170 QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDW  248 (423)
Q Consensus       170 ~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~f  248 (423)
                      .....|.++|+.+.+.+.|+.+.-.   .   +|++++      +.. |+|++|+++...   ...|.|. .+.+.|.+|
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------~~~-p~i~~~k~~~~~---~~~y~~~~~~~~~l~~f   70 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTFNE---E---LAKKYG------IKE-PTIVVYKKFDEK---PVVYDGDKFTPEELKKF   70 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE-H---H---HHHHCT------CSS-SEEEEEECTTTS---EEEESSSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEcHH---H---HHHHhC------CCC-CcEEEeccCCCC---ceecccccCCHHHHHHH
Confidence            3567899999999999999998733   2   888898      778 999999986442   5789997 899999999


Q ss_pred             HHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCC----CCchHHHHHHHhccccceEEEEEccccccHHHHh
Q 014549          249 FATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGE----RASPFVRQISRNYWAYASFAFVLWREEESSIWWN  324 (423)
Q Consensus       249 i~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~----~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~  324 (423)
                      +...  ..|....+|.++ ...+....  ..++++++.+...    .....++.+|.++++.+.|+.+...  ..+.+++
T Consensus        71 I~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~  143 (184)
T PF13848_consen   71 IKKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLK  143 (184)
T ss_dssp             HHHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHH
T ss_pred             HHHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHH
Confidence            9988  577766677665 45555432  1235555543211    1123345688889888888888644  2366889


Q ss_pred             hcCCC--CCCeEEEecCCCcce-eEecCCCChhHHHHHHHh
Q 014549          325 TFEVE--SAPAIVFLKDPGVKP-VVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       325 ~f~v~--~~Ptl~lfk~~~~~~-~~y~g~~~~~~l~~fi~~  362 (423)
                      .||++  ..|+++++....... ..+.++++.+.|.+|++.
T Consensus       144 ~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  144 YFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             HTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             HcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            99998  699999998544332 223788999999999974

...

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.1e-10  Score=112.98  Aligned_cols=68  Identities=35%  Similarity=0.577  Sum_probs=61.7

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~----~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|+|++|||.++|+..+|++|||+++++||||++++.    ..+|.++.+||++|+|+.+|..||.+|+.+
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~   73 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEG   73 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccc
Confidence            46999999999999999999999999999999998743    346999999999999999999999999843

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.3e-10  Score=113.10  Aligned_cols=69  Identities=29%  Similarity=0.462  Sum_probs=62.5

Q ss_pred             cCCCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhHhhhhhc
Q 014549           31 LPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVY   99 (423)
Q Consensus        31 ~~~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~----~~~f~~i~~Ay~~L~~~~~r~~yd~~   99 (423)
                      +..|...|||++||+.+.++..|||+|||++++.||||++.+.    +.+|+++-+||.+|+||.+|..||.-
T Consensus       367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            4456688999999999999999999999999999999998753    45699999999999999999999984

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.03  E-value=7.2e-10  Score=85.44  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccccc
Q 014549          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE  237 (423)
Q Consensus       158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~  237 (423)
                      |.||++||++|+.+.|.|+++++++...+.+..|| +     .+.+.+++      +.+.||+++  +|+.      .+.
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~-----~~~a~~~~------v~~vPti~i--~G~~------~~~   62 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D-----MNEILEAG------VTATPGVAV--DGEL------VIM   62 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C-----HHHHHHcC------CCcCCEEEE--CCEE------EEE
Confidence            78999999999999999999999998778888887 2     11367788      999999999  6654      477


Q ss_pred             CC-CCHHHHHHHH
Q 014549          238 GE-LSVDAVTDWF  249 (423)
Q Consensus       238 G~-~~~~~l~~fi  249 (423)
                      |. .+.+.|.+++
T Consensus        63 G~~~~~~~l~~~l   75 (76)
T TIGR00412        63 GKIPSKEEIKEIL   75 (76)
T ss_pred             eccCCHHHHHHHh
Confidence            85 4557777765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PHA02624 large T antigen; Provisional

Probab=99.02  E-value=1.9e-10  Score=118.74  Aligned_cols=63  Identities=13%  Similarity=0.227  Sum_probs=58.5

Q ss_pred             CCCcccccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhh
Q 014549           33 RSFPPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY   96 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~y   96 (423)
                      .+...++|++|||+++|  +..+||+|||++++++|||++ ++.++|++|+.||++|+|+.+|..|
T Consensus         7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            33456899999999999  999999999999999999996 6789999999999999999999998

>PHA02125 thioredoxin-like protein

Probab=98.99  E-value=9.3e-10  Score=84.57  Aligned_cols=69  Identities=17%  Similarity=0.266  Sum_probs=52.6

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      +|.||+|||++|+.+.|.+++++      ..+..||+++   ..+++++++      |.++||++   .|+.    ...+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~---~~~l~~~~~------v~~~PT~~---~g~~----~~~~   59 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE---GVELTAKHH------IRSLPTLV---NTST----LDRF   59 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC---CHHHHHHcC------CceeCeEE---CCEE----EEEE
Confidence            68999999999999999997653      4678999884   456999999      99999997   3432    2356


Q ss_pred             cC-CCCHHHHHH
Q 014549          237 EG-ELSVDAVTD  247 (423)
Q Consensus       237 ~G-~~~~~~l~~  247 (423)
                      .| +++..+|.+
T Consensus        60 ~G~~~~~~~l~~   71 (75)
T PHA02125         60 TGVPRNVAELKE   71 (75)
T ss_pred             eCCCCcHHHHHH
Confidence            77 345555554

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.98  E-value=3.8e-10  Score=107.78  Aligned_cols=54  Identities=26%  Similarity=0.417  Sum_probs=48.7

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHcCC
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELLTD   89 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~----------~~~~~f~~i~~Ay~~L~~   89 (423)
                      ..|+|++|||++++|.+|||+|||+|+++||||+..          .+.++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999853          146789999999999975

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.98  E-value=2.2e-09  Score=99.70  Aligned_cols=81  Identities=14%  Similarity=0.076  Sum_probs=68.1

Q ss_pred             CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCc
Q 014549          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (423)
Q Consensus       154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~  233 (423)
                      ...++.||++||++|+.+.|.+++++.+ .+.+.+..||.+   ...+++++++      |.++||++++.+|.      
T Consensus       134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~---~~~~~~~~~~------V~~vPtl~i~~~~~------  197 (215)
T TIGR02187       134 PVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEAN---ENPDLAEKYG------VMSVPKIVINKGVE------  197 (215)
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCC---CCHHHHHHhC------CccCCEEEEecCCE------
Confidence            3445559999999999999999999987 456888899999   4566999999      99999999987652      


Q ss_pred             ccccCCCCHHHHHHHHHH
Q 014549          234 TRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       234 ~~y~G~~~~~~l~~fi~~  251 (423)
                       .|.|..+.+.|.+|+.+
T Consensus       198 -~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       198 -EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             -EEECCCCHHHHHHHHHh
Confidence             38899999999999865

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.96  E-value=1.4e-09  Score=114.91  Aligned_cols=101  Identities=16%  Similarity=0.232  Sum_probs=78.8

Q ss_pred             cCCccccc----CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccc-hhhhHHHhhCCCCccccc
Q 014549          143 SEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR  214 (423)
Q Consensus       143 ~~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~-~~~~~l~~~~~~~~~~~i  214 (423)
                      .+++++.+    .++++++|+|||+||++|+.++|..   +++.+.+++ +.+.++|++++ ....+++++++      |
T Consensus       460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v  532 (571)
T PRK00293        460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V  532 (571)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence            35566655    3468999999999999999999875   677777764 67899999844 34567999999      9


Q ss_pred             cCccEEEEeCC-CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          215 RGLPSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~-g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .++||+++|.+ |+..  ...++.|..+.+++.+++.+.
T Consensus       533 ~g~Pt~~~~~~~G~~i--~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        533 LGLPTILFFDAQGQEI--PDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCCEEEEECCCCCCc--ccccccCCCCHHHHHHHHHHh
Confidence            99999999974 4431  123677999999999998764

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.95  E-value=1e-09  Score=91.95  Aligned_cols=91  Identities=16%  Similarity=0.142  Sum_probs=61.9

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC--ccEEEEeC-CCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC  227 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~--~Pti~~f~-~g~  227 (423)
                      .++++++|.|||+||++|+.+.|.+.+.+........|..||.+.++.  .+.+.++      +.+  +||+++|. +|+
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~------~~g~~vPt~~f~~~~Gk   88 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFS------PDGGYIPRILFLDPSGD   88 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcc------cCCCccceEEEECCCCC
Confidence            678999999999999999999999999877654444666677664321  2445666      665  99999996 555


Q ss_pred             CCCCCcccccCCCCHHHHHHHHH
Q 014549          228 KSSDCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       228 ~~~~~~~~y~G~~~~~~l~~fi~  250 (423)
                      .. .......|..+.+.+.+++.
T Consensus        89 ~~-~~~~~~~~~~~~~~f~~~~~  110 (117)
T cd02959          89 VH-PEIINKKGNPNYKYFYSSAA  110 (117)
T ss_pred             Cc-hhhccCCCCccccccCCCHH
Confidence            42 11223345555555544443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.94  E-value=3.9e-10  Score=102.21  Aligned_cols=102  Identities=12%  Similarity=0.251  Sum_probs=88.8

Q ss_pred             cceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .+.+..++.+|+..++..  -|+++|+||||+.|+.+.|.|+..|.--.+. +++|.||.+.++         +.+.||.
T Consensus        23 ~s~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np---------gLsGRF~   91 (248)
T KOG0913|consen   23 SSKLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP---------GLSGRFL   91 (248)
T ss_pred             cceeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc---------ccceeeE
Confidence            346899999999998854  4999999999999999999999999876665 799999999665         5566778


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +...|||.=..+|.-.     +|.|.|+.++++.|+..+
T Consensus        92 vtaLptIYHvkDGeFr-----rysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen   92 VTALPTIYHVKDGEFR-----RYSGARDKNDFISFEEHR  125 (248)
T ss_pred             EEecceEEEeeccccc-----cccCcccchhHHHHHHhh
Confidence            9999999999999764     899999999999999765

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.90  E-value=1.9e-09  Score=89.10  Aligned_cols=89  Identities=21%  Similarity=0.254  Sum_probs=62.8

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHH---HHHhhccceEEEEEcccch-----------------hhhHHHhhCCCCc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQ  210 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~---A~~l~~~~~~~~Vdc~~~~-----------------~~~~l~~~~~~~~  210 (423)
                      .++++.++.|++|||++|+.+.+...+.   +..++..+.+..++++...                 ...++++.++   
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---   79 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG---   79 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC---
Confidence            3578999999999999999999888754   4444445778888877433                 1346888888   


Q ss_pred             cccccCccEEEEeC-CCCCCCCCcccccCCCCHHHHHHHH
Q 014549          211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       211 ~~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                         |.++||++++. +|+.    ...+.|..+.++|.+++
T Consensus        80 ---v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   80 ---VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred             ---CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence               99999999996 4543    34578999999998764

...

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.82  E-value=2e-08  Score=89.61  Aligned_cols=92  Identities=9%  Similarity=0.132  Sum_probs=74.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch-------------------hhhHHHhhCCCCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR-------------------LATHLAERKPIGQI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~-------------------~~~~l~~~~~~~~~  211 (423)
                      .+++++|.||++||+.|+...|.+.++++++.+. +.+..|++++..                   ....+++.++    
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  135 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG----  135 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence            4688999999999999999999999999999865 788899887432                   1245677777    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++|+++++.+++..   ...+.|..+.+.+.+++.+.
T Consensus       136 --v~~~P~~~lid~~g~i---~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        136 --VGPLPTTFLIDKDGKV---VKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             --CCCcCeEEEECCCCcE---EEEEeCCCCHHHHHHHHHHh
Confidence              8999999988755542   44678999999999988754

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.3e-09  Score=92.73  Aligned_cols=63  Identities=22%  Similarity=0.339  Sum_probs=56.6

Q ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhHhhhh
Q 014549           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYD   97 (423)
Q Consensus        35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~----~~~f~~i~~Ay~~L~~~~~r~~yd   97 (423)
                      .+-|||+||.+.|..+.++||+.||+|+...|||+|+++    ..+|.-|.+||..|-|+..|+.-+
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            478999999999999999999999999999999999964    456999999999999998776654

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=5e-09  Score=93.79  Aligned_cols=85  Identities=20%  Similarity=0.267  Sum_probs=73.8

Q ss_pred             ccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCcc
Q 014549          142 TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       142 ~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P  218 (423)
                      +.+.+++.+  +....|+|+||+-|.+.|.+++|.|.+++.++... .+||+||..   ..++.+++|+++..-+-+..|
T Consensus       131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---rfpd~a~kfris~s~~srQLP  207 (265)
T KOG0914|consen  131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---RFPDVAAKFRISLSPGSRQLP  207 (265)
T ss_pred             chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec---cCcChHHheeeccCcccccCC
Confidence            444555555  66789999999999999999999999999998876 699999999   777899999988777788999


Q ss_pred             EEEEeCCCCCC
Q 014549          219 SLVAFPPGCKS  229 (423)
Q Consensus       219 ti~~f~~g~~~  229 (423)
                      |+++|..|+..
T Consensus       208 T~ilFq~gkE~  218 (265)
T KOG0914|consen  208 TYILFQKGKEV  218 (265)
T ss_pred             eEEEEccchhh
Confidence            99999999763

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.75  E-value=2.4e-08  Score=74.68  Aligned_cols=56  Identities=21%  Similarity=0.233  Sum_probs=47.9

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++.||++||++|+.+.+.+++++.. .+.+.+..+|.++   .++++++++      +.++||+++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~---~~~l~~~~~------i~~vPti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAE---FPDLADEYG------VMSVPAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEccc---CHhHHHHcC------CcccCEEEE
Confidence            6789999999999999999999775 3458999999984   455899999      999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02740 TraF-like TraF-like protein

Probab=98.75  E-value=3.1e-08  Score=95.00  Aligned_cols=90  Identities=16%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--------hhhHHHhhCCCCccccccCccEEEEe
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--------~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      .+++.||.||++||++|+.+.|.++++++++.  +.|..|+.+...        ....+++++|      |.++||++++
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv  236 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA  236 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence            36799999999999999999999999999875  456566655321        1245788888      9999999999


Q ss_pred             CC-CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       224 ~~-g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .+ |+..   .....|..+.+.|.+.+...
T Consensus       237 ~~~~~~v---~~v~~G~~s~~eL~~~i~~~  263 (271)
T TIGR02740       237 DPDPNQF---TPIGFGVMSADELVDRILLA  263 (271)
T ss_pred             ECCCCEE---EEEEeCCCCHHHHHHHHHHH
Confidence            87 4431   12345889999999988765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.69  E-value=3.4e-08  Score=87.93  Aligned_cols=62  Identities=10%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             ccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        37 ~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      .|||++||+++.  .+..+++++||+|.+++|||+..+        +.+.-..|++||.+|+||.+|..|=.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            489999999987  789999999999999999998642        23347899999999999999999975

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.68  E-value=7.5e-08  Score=79.69  Aligned_cols=63  Identities=13%  Similarity=0.188  Sum_probs=45.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      ++++++|.||++||++|+...|.++++++.+++.+.+..+.-........++++++      +..+|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~------~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG------LEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC------CCCCcEE
Confidence            46899999999999999999999999998876655555442122224455777777      4455654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.66  E-value=1.2e-07  Score=82.97  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=64.0

Q ss_pred             ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh---------hhHH-HhhCCCCccccccCcc
Q 014549          149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL---------ATHL-AERKPIGQIFFRRGLP  218 (423)
Q Consensus       149 ~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~---------~~~l-~~~~~~~~~~~i~~~P  218 (423)
                      .+...+..+|.|||+||++|++..|.++++++++.  +.|..|+.++...         .... ...++.   ..+.++|
T Consensus        46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iP  120 (153)
T TIGR02738        46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTP  120 (153)
T ss_pred             hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCC
Confidence            34456667999999999999999999999998873  4555566553210         0122 233311   0288999


Q ss_pred             EEEEeCCC-CCCCCCcccccCCCCHHHHHHHHHH
Q 014549          219 SLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       219 ti~~f~~g-~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      |.+++.+. ...   ...+.|..+.+++.+.+.+
T Consensus       121 Tt~LID~~G~~i---~~~~~G~~s~~~l~~~I~~  151 (153)
T TIGR02738       121 ATFLVNVNTRKA---YPVLQGAVDEAELANRMDE  151 (153)
T ss_pred             eEEEEeCCCCEE---EEEeecccCHHHHHHHHHH
Confidence            99999654 321   1246799999988877654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.66  E-value=7.3e-08  Score=80.90  Aligned_cols=93  Identities=17%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE--------------------cccchhhh
Q 014549          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE--------------------LGDIRLAT  200 (423)
Q Consensus       141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd--------------------c~~~~~~~  200 (423)
                      ++.+++......+++++|.||++||++|+.+.|.+.++++.+. .+.|..-+                    ++   ...
T Consensus         8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~   83 (123)
T cd03011           8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVIND---PDG   83 (123)
T ss_pred             CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEEC---CCc
Confidence            3334444333345899999999999999999999999987732 11221111                    12   224


Q ss_pred             HHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHH
Q 014549          201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD  247 (423)
Q Consensus       201 ~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~  247 (423)
                      .+++.|+      |.++|++.++.+++.    ...+.|..+.+.|.+
T Consensus        84 ~~~~~~~------i~~~P~~~vid~~gi----~~~~~g~~~~~~~~~  120 (123)
T cd03011          84 VISARWG------VSVTPAIVIVDPGGI----VFVTTGVTSEWGLRL  120 (123)
T ss_pred             HHHHhCC------CCcccEEEEEcCCCe----EEEEeccCCHHHHHh
Confidence            5788888      899999999987763    456778888888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.64  E-value=1.3e-07  Score=75.21  Aligned_cols=76  Identities=14%  Similarity=0.090  Sum_probs=61.7

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      +.+-+..|++|||++|....+.+++++... +.+.+..+|.+   ...+++++|+      |.++||+++  +|+.    
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~---~~~e~a~~~~------V~~vPt~vi--dG~~----   75 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGA---LFQDEVEERG------IMSVPAIFL--NGEL----   75 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhH---hCHHHHHHcC------CccCCEEEE--CCEE----
Confidence            445678899999999999999999999765 35899999988   5567999999      999999965  6654    


Q ss_pred             cccccCCCCHHHHH
Q 014549          233 MTRFEGELSVDAVT  246 (423)
Q Consensus       233 ~~~y~G~~~~~~l~  246 (423)
                        .+.|..+.++++
T Consensus        76 --~~~G~~~~~e~~   87 (89)
T cd03026          76 --FGFGRMTLEEIL   87 (89)
T ss_pred             --EEeCCCCHHHHh
Confidence              567866766654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.64  E-value=2.7e-07  Score=82.91  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=85.8

Q ss_pred             CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-CChhHHHHHHHhhccccCcc
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQELPQ  370 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~~~~l~~fi~~~~~~~lp~  370 (423)
                      ....+..+|..+.+.+.|+.+.     +.+++++++++. |+|++|++++.++..|.|. ++.+.|.+||..+.+|.+++
T Consensus         8 ~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~   81 (184)
T PF13848_consen    8 LFEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPE   81 (184)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEE
T ss_pred             HHHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccc
Confidence            3455677899998888998885     456899999987 9999999988889999998 89999999999999999999


Q ss_pred             cccccccccCCCCCCccCCCCCCcceEEEEEEcc-CChhhHHHHHHHhhh
Q 014549          371 LRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMREVSISA  419 (423)
Q Consensus       371 l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~-~~~~~~~~~~~~~~~  419 (423)
                      ++..+...+.-       .++    ++.++++.+ +....+.+++.++++
T Consensus        82 ~t~~n~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~l~~~  120 (184)
T PF13848_consen   82 LTPENFEKLFS-------SPK----PPVLILFDNKDNESTEAFKKELQDI  120 (184)
T ss_dssp             ESTTHHHHHHS-------TSS----EEEEEEEETTTHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhc-------CCC----ceEEEEEEcCCchhHHHHHHHHHHH
Confidence            99998877741       111    456666653 344556666665554

...

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.64  E-value=1.2e-07  Score=97.94  Aligned_cols=89  Identities=20%  Similarity=0.112  Sum_probs=68.6

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEE----------------------------cccchhhhH
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVE----------------------------LGDIRLATH  201 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vd----------------------------c~~~~~~~~  201 (423)
                      +.+++++|.|||+||++|++..|.+++++++++. .+.|..|+                            ++   ....
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D---~~~~  130 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTD---NGGT  130 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecc---ccHH
Confidence            4788999999999999999999999999998863 24444443                            22   2344


Q ss_pred             HHhhCCCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          202 LAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       202 l~~~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +++.++      |+++||++++ ++|+.    ...+.|..+.+.|.+++...
T Consensus       131 lak~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        131 LAQSLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             HHHHcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHHh
Confidence            677777      9999999666 55654    45677999999999999743

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.64  E-value=3.8e-08  Score=83.08  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHH-HHH--HHHHHhhccceEEEEEcccchhhhHHHh--------hCCCCcccc
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAE--------RKPIGQIFF  213 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p-~~~--~~A~~l~~~~~~~~Vdc~~~~~~~~l~~--------~~~~~~~~~  213 (423)
                      .+....++++++||.||++||+.|+.|.+ .|.  ++++.+.....+.+||.++++   ++++        .++      
T Consensus         7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~---~~~~~~~~~~~~~~~------   77 (124)
T cd02955           7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP---DVDKIYMNAAQAMTG------   77 (124)
T ss_pred             HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc---HHHHHHHHHHHHhcC------
Confidence            44455578999999999999999999987 343  567777767778889988543   3433        246      


Q ss_pred             ccCccEEEEeCCCCC
Q 014549          214 RRGLPSLVAFPPGCK  228 (423)
Q Consensus       214 i~~~Pti~~f~~g~~  228 (423)
                      +.|+||++++.+...
T Consensus        78 ~~G~Pt~vfl~~~G~   92 (124)
T cd02955          78 QGGWPLNVFLTPDLK   92 (124)
T ss_pred             CCCCCEEEEECCCCC
Confidence            889999999977654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.62  E-value=1.2e-07  Score=80.62  Aligned_cols=71  Identities=11%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchh---------------------hhHHHhhCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL---------------------ATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~---------------------~~~l~~~~~  207 (423)
                      .+++++|.||++||+.|+...|.+.++.+++.+.   +.+..|+.+.+..                     ...+++.|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            3678999999999999999999999999888643   5566666653311                     245677787


Q ss_pred             CCccccccCccEEEEeCCCCC
Q 014549          208 IGQIFFRRGLPSLVAFPPGCK  228 (423)
Q Consensus       208 ~~~~~~i~~~Pti~~f~~g~~  228 (423)
                            |.++|+++++.+++.
T Consensus        97 ------v~~~P~~~lid~~G~  111 (131)
T cd03009          97 ------IEGIPTLIILDADGE  111 (131)
T ss_pred             ------CCCCCEEEEECCCCC
Confidence                  999999999975443

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.60  E-value=9.1e-08  Score=80.95  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-h-------------------hhhHHHhhCCCCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R-------------------LATHLAERKPIGQI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-~-------------------~~~~l~~~~~~~~~  211 (423)
                      .+++++|.||++||++|+...|.++++++...  +.|..|+.+.. .                   ....+++.|+    
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~----   97 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG----   97 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC----
Confidence            36789999999999999999999999987752  55555553211 0                   1233566666    


Q ss_pred             ccccCccEEEEe-CCCCCCCCCcccccCCCCHHHH
Q 014549          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV  245 (423)
Q Consensus       212 ~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l  245 (423)
                        +.++|+.+++ ++|..    ...+.|..+.+.|
T Consensus        98 --v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~  126 (127)
T cd03010          98 --VYGVPETFLIDGDGII----RYKHVGPLTPEVW  126 (127)
T ss_pred             --CCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence              8999965555 56654    3467788876654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.59  E-value=2.5e-07  Score=78.33  Aligned_cols=99  Identities=9%  Similarity=0.075  Sum_probs=84.0

Q ss_pred             eccCCcccccCCCCcEEEEEecC--CCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          141 VTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       141 L~~~nf~~~v~~~~~~lV~FYap--wC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      ++..+++..+......++.|-.+  .++.+...+=..+++++++.+ .+++++||++   .+..|+.+||      |.++
T Consensus        22 ~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD---~~~~LA~~fg------V~si   92 (132)
T PRK11509         22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE---QSEAIGDRFG------VFRF   92 (132)
T ss_pred             cccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC---CCHHHHHHcC------CccC
Confidence            56677888887777777776654  478888899999999999985 4899999999   5566999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|++|+.    .....|.++.+.+.+|+.+.
T Consensus        93 PTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~  123 (132)
T PRK11509         93 PATLVFTGGNY----RGVLNGIHPWAELINLMRGL  123 (132)
T ss_pred             CEEEEEECCEE----EEEEeCcCCHHHHHHHHHHH
Confidence            99999999987    56778999999999999877

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.57  E-value=2.1e-07  Score=79.44  Aligned_cols=70  Identities=16%  Similarity=0.139  Sum_probs=54.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchh----------------------hhHHHhhC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL----------------------ATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~----------------------~~~l~~~~  206 (423)
                      .+++++|.||++||++|+...|.++++++.+++.   +.+..|+.+++..                      ...+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            4689999999999999999999999999988753   5677777664320                      12345556


Q ss_pred             CCCccccccCccEEEEeCCCC
Q 014549          207 PIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       207 ~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      +      |.++||++++.+++
T Consensus        96 ~------v~~iPt~~lid~~G  110 (132)
T cd02964          96 K------VEGIPTLVVLKPDG  110 (132)
T ss_pred             C------CCCCCEEEEECCCC
Confidence            6      99999999997543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=6e-08  Score=89.35  Aligned_cols=68  Identities=25%  Similarity=0.247  Sum_probs=60.2

Q ss_pred             cccccccccccC---CCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~---~a~~~~ik~ayr~l~~~~hPd~~-----~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|+|.+||++.   .++..+|.++.++...+||||+.     .++.+.|..|++||++|+|+..|.+||.-..+.
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a  117 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA  117 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccccc
Confidence            679999999985   57889999999999999999986     367888999999999999999999999865443

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.55  E-value=1.3e-07  Score=83.13  Aligned_cols=51  Identities=16%  Similarity=0.341  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhhc
Q 014549           49 SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVY   99 (423)
Q Consensus        49 a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~~   99 (423)
                      .+..+|+++||++++++|||+.++        +.+.+..|++||++|+||.+|..|...
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            467899999999999999998542        345699999999999999999999963

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.53  E-value=2.1e-07  Score=75.90  Aligned_cols=69  Identities=17%  Similarity=0.128  Sum_probs=56.2

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhh-ccceEEEEEcccc--hh------------------hhHHHhhCCCCcc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDI--RL------------------ATHLAERKPIGQI  211 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-~~~~~~~Vdc~~~--~~------------------~~~l~~~~~~~~~  211 (423)
                      +++++|.||++||++|+...+.+.++.+.++ ..+.+..|+++.+  ..                  ...+++.|+    
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   94 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG----   94 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC----
Confidence            6899999999999999999999999999987 3479999999853  00                  144677777    


Q ss_pred             ccccCccEEEEeCCCC
Q 014549          212 FFRRGLPSLVAFPPGC  227 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~  227 (423)
                        +.++|+++++.++.
T Consensus        95 --~~~~P~~~l~d~~g  108 (116)
T cd02966          95 --VRGLPTTFLIDRDG  108 (116)
T ss_pred             --cCccceEEEECCCC
Confidence              88999999996543

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.52  E-value=8.2e-07  Score=73.74  Aligned_cols=98  Identities=16%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEe--cCCCCCchHHHHHHHhccc---cceEEEEEccc---cccHHHHhhcCCC--CC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYWA---YASFAFVLWRE---EESSIWWNTFEVE--SA  331 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~--~~~~~~~~~~~~~a~~~~~---~~~f~~v~~~~---~~~~~l~~~f~v~--~~  331 (423)
                      +++.+ +++++.+.+  .++|-|+.  +.+.. .|.++.+|.+|..   .+.++.|...+   .+..+|+++|+|+  ++
T Consensus         6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy   81 (116)
T cd03007           6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY   81 (116)
T ss_pred             CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence            45544 566665432  36777888  65543 4778888877643   35566665422   2337899999999  89


Q ss_pred             CeEEEecCC-CcceeEecCC-CChhHHHHHHHhh
Q 014549          332 PAIVFLKDP-GVKPVVYYGS-FNNSRLSEVMEQN  363 (423)
Q Consensus       332 Ptl~lfk~~-~~~~~~y~g~-~~~~~l~~fi~~~  363 (423)
                      |||++|+++ ...|+.|.|. ++.+.|.+||+++
T Consensus        82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            999999987 3567889996 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.43  E-value=4.7e-07  Score=81.16  Aligned_cols=95  Identities=20%  Similarity=0.138  Sum_probs=62.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-hhhhHHHhhCCC-------------CccccccC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKPI-------------GQIFFRRG  216 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-~~~~~l~~~~~~-------------~~~~~i~~  216 (423)
                      ..+++++|.||++||++|+++.|.++++++.   .+.+..|+-++. ......+++++.             ...|++.+
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~  137 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG  137 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence            3578999999999999999999999888753   255555553211 111122222211             02334889


Q ss_pred             ccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|+.+++ ++|+.    ...+.|..+.+++.+++.+.
T Consensus       138 ~P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~  170 (173)
T TIGR00385       138 APETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA  170 (173)
T ss_pred             CCeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence            9965555 56654    34566989999999998765

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.42  E-value=1.1e-06  Score=73.15  Aligned_cols=92  Identities=8%  Similarity=0.171  Sum_probs=71.1

Q ss_pred             CCCCcEEEEEecCCCccccccHH-HH--HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCC-C
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP-G  226 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p-~~--~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~-g  226 (423)
                      +.+++++|.|+++||..|+.|.. .|  +++.+.++....+.++|.++. ....+++.++      +.++|++.++.+ +
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~------~~~~P~~~~i~~~~   87 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYK------VDKYPHIAIIDPRT   87 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhC------ccCCCeEEEEeCcc
Confidence            56899999999999999999976 45  345666766666666776542 3466899999      999999999976 3


Q ss_pred             CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          227 CKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       227 ~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ...   .....|..+++.+..-+.+.
T Consensus        88 g~~---l~~~~G~~~~~~f~~~L~~~  110 (114)
T cd02958          88 GEV---LKVWSGNITPEDLLSQLIEF  110 (114)
T ss_pred             CcE---eEEEcCCCCHHHHHHHHHHH
Confidence            332   45677999999999888765

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.42  E-value=7.8e-07  Score=71.12  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=52.5

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccc-hhhhHHHhhCCCC---------------ccccc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDI-RLATHLAERKPIG---------------QIFFR  214 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~-~~~~~l~~~~~~~---------------~~~~i  214 (423)
                      +++++|.|||+||++|++..|...++.+.++  +.+.|..|+++++ ....+..++.+..               ..+.|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            4789999999999999999999999999999  6688888888754 1222222332111               33448


Q ss_pred             cCccEEEEeCCCC
Q 014549          215 RGLPSLVAFPPGC  227 (423)
Q Consensus       215 ~~~Pti~~f~~g~  227 (423)
                      .++|+++++.+++
T Consensus        81 ~~iP~~~lld~~G   93 (95)
T PF13905_consen   81 NGIPTLVLLDPDG   93 (95)
T ss_dssp             TSSSEEEEEETTS
T ss_pred             CcCCEEEEECCCC
Confidence            8999988886643

...

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.40  E-value=9.8e-07  Score=76.57  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=53.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhc--------cceEEEEEcccchh-hhHHHhhCCCC-------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--------IANTGMVELGDIRL-ATHLAERKPIG-------------  209 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--------~~~~~~Vdc~~~~~-~~~l~~~~~~~-------------  209 (423)
                      .+++++|.|||+||+.|++..|...++.+.+.+        .+.+..|+-+++.. ..+..++.++.             
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            468999999999999999999999999887754        26777777664321 12222222210             


Q ss_pred             --ccccccCccEEEEeCCCCC
Q 014549          210 --QIFFRRGLPSLVAFPPGCK  228 (423)
Q Consensus       210 --~~~~i~~~Pti~~f~~g~~  228 (423)
                        ..|+|.++||.+++.+...
T Consensus       104 l~~~y~v~~iPt~vlId~~G~  124 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGD  124 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCc
Confidence              2344889999999976543

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.38  E-value=1.5e-06  Score=78.80  Aligned_cols=95  Identities=16%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCC-------------ccccccC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIG-------------QIFFRRG  216 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~-------------~~~~i~~  216 (423)
                      ..+++++|.||++||++|++..|.+.++++.   .+.|..|+-++++. .....++++..             ..++|.+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~  142 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  142 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence            3578999999999999999999999988652   35666677543221 11122222211             2345999


Q ss_pred             ccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|+.+++ ++|..    ...+.|..+.+.+.+++...
T Consensus       143 ~P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~  175 (185)
T PRK15412        143 APETFLIDGNGII----RYRHAGDLNPRVWESEIKPL  175 (185)
T ss_pred             CCeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence            9966665 56654    34566999988888888765

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.36  E-value=4.5e-06  Score=69.98  Aligned_cols=94  Identities=15%  Similarity=0.218  Sum_probs=67.4

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEec-C-----CC--CCchHHHHHHHhc--cccceEEEEEccccccHHHHhhcCCCCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSK-T-----GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA  331 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~-~-----~~--~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~~~l~~~f~v~~~  331 (423)
                      +|+.+ +++.+.++  ..++|++|.. .     ++  .+.|.+..+|..+  .+.+.|+.|+...  .++++++|+|.++
T Consensus        14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i   88 (120)
T cd03065          14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE   88 (120)
T ss_pred             CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence            45544 44444432  3477777763 2     22  3456667777777  6678888886443  3789999999999


Q ss_pred             CeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       332 Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      |||++|+++.  .+.|.|.++.+.|.+||.+
T Consensus        89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~  117 (120)
T cd03065          89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD  117 (120)
T ss_pred             cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence            9999999765  4458999999999999986

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.28  E-value=2.2e-06  Score=96.79  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=69.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc---cch---------------------hhhHHHhhC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG---DIR---------------------LATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~---~~~---------------------~~~~l~~~~  206 (423)
                      .+++++|.|||+||++|+...|.++++++++++. +.|..|.+.   ++.                     ....+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            4789999999999999999999999999999765 555555432   100                     122345556


Q ss_pred             CCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       207 ~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +      |.++|+++++ ++|+.    ...+.|....+.|.+++.+.
T Consensus       499 ~------V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~  535 (1057)
T PLN02919        499 G------VSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAA  535 (1057)
T ss_pred             C------CCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHH
Confidence            6      9999999999 56654    44677988889999988766

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.27  E-value=3.6e-06  Score=75.38  Aligned_cols=86  Identities=12%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch----------hhhHHHhhCCCCccccc--cCccEEEEeC
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFR--RGLPSLVAFP  224 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~----------~~~~l~~~~~~~~~~~i--~~~Pti~~f~  224 (423)
                      +|.||++||++|++..|..+++++++.  +.|..|+.++..          ....+.+.|+      +  .++||..++.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g------~~~~~iPttfLId  144 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFP------NIPVATPTTFLVN  144 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhC------CCCCCCCeEEEEe
Confidence            788999999999999999999999974  566666666331          1123455666      4  5999999995


Q ss_pred             CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          225 PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       225 ~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .+...  ....+.|..+.++|.+-+.+.
T Consensus       145 ~~G~i--~~~~~~G~~~~~~L~~~I~~l  170 (181)
T PRK13728        145 VNTLE--ALPLLQGATDAAGFMARMDTV  170 (181)
T ss_pred             CCCcE--EEEEEECCCCHHHHHHHHHHH
Confidence            54431  012577999999998877665

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.24  E-value=1.2e-06  Score=68.32  Aligned_cols=64  Identities=17%  Similarity=0.224  Sum_probs=49.1

Q ss_pred             CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP  224 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~  224 (423)
                      +++++++|.|+++||+.|+.|....   .++.+.+...+....||.++.....    ++.      ..++|+++++.
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~----~~~------~~~~P~~~~ld   81 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA----QFD------RQGYPTFFFLD   81 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH----HHH------HCSSSEEEEEE
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH----HhC------CccCCEEEEeC
Confidence            6799999999999999999999877   5566667777889999987443212    111      34799999875

...

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.22  E-value=8.1e-06  Score=65.69  Aligned_cols=96  Identities=25%  Similarity=0.403  Sum_probs=68.1

Q ss_pred             cccchhhhhhhhhcCCCceEEEEE-ecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f-~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +|+++ +++.+..  .+++++++| .+.+   ....|.+..++..+.+.+.|+.+...  +...++++|+|.++|++++|
T Consensus         4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred             CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence            45555 4555543  233555554 4322   22456777788888777778777643  24789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++.... .|.|.++.+.|.+||++|
T Consensus        79 ~~g~~~~-~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNGKEVK-RYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETTEEEE-EEESSSSHHHHHHHHHHH
T ss_pred             ECCcEEE-EEECCCCHHHHHHHHHcC
Confidence            8765444 789999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.22  E-value=1.4e-06  Score=89.63  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=74.3

Q ss_pred             CcccccCCC--CcEEEEEecCCCccccccHHH-HHHHHHHhhc-cceEEEEEcc-cchhhhHHHhhCCCCccccccCccE
Q 014549          145 DFPSIFHDS--KPWLIQVYSDGSYLCGQFSGA-WKTIAALLEG-IANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       145 nf~~~v~~~--~~~lV~FYapwC~~C~~~~p~-~~~~A~~l~~-~~~~~~Vdc~-~~~~~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      ..++.+..+  +++++.|||+||-.||.+++. +.+.....+- .+..-++|.+ +++...++-++++      +-+.|+
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~------~~G~P~  537 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG------VFGVPT  537 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcC------CCCCCE
Confidence            555666444  499999999999999998873 3222222222 2577889988 5566777889999      999999


Q ss_pred             EEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       220 i~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +++|.++...   +..-.|..+.+.+.+++++.
T Consensus       538 ~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         538 YLFFGPQGSE---PEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             EEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence            9999965543   34478999999999999875

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.15  E-value=5.9e-06  Score=59.10  Aligned_cols=63  Identities=24%  Similarity=0.360  Sum_probs=49.4

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      ++.||++||++|+++.+.+.++ ....+.+.+..+++++..........++      +.++|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence            4789999999999999999988 5555668999999995543222223566      8899999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.13  E-value=1e-05  Score=65.78  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC-hhH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN-NSR  355 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~-~~~  355 (423)
                      ++|.|+++.+   ....|.+..++.++.+.+.|+.++...  ...++++|+|.++||+++|++++.....|.|..+ .+.
T Consensus        22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~   99 (104)
T cd03004          22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADS   99 (104)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHH
Confidence            4555666432   234677788888887777777775322  3789999999999999999987667788899886 888


Q ss_pred             HHHHH
Q 014549          356 LSEVM  360 (423)
Q Consensus       356 l~~fi  360 (423)
                      |.+||
T Consensus       100 l~~~i  104 (104)
T cd03004         100 ILEFI  104 (104)
T ss_pred             HHhhC
Confidence            88885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=2.5e-06  Score=91.32  Aligned_cols=53  Identities=19%  Similarity=0.343  Sum_probs=46.6

Q ss_pred             cccccccccccCC----CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 014549           36 PPSHYDALGIKPY----SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT   88 (423)
Q Consensus        36 ~~d~y~~lg~~~~----a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~   88 (423)
                      ..+-|+||.++-+    -..+.||++|++||.+|||||||+..++|..+++|||.|+
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            4578999999732    2347799999999999999999999999999999999997

>smart00594 UAS UAS domain

Probab=98.09  E-value=1.5e-05  Score=67.15  Aligned_cols=92  Identities=12%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             CCCCcEEEEEecCCCccccccHHH-HH--HHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGA-WK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~-~~--~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      +..+..+|.|+++||..|+.|... |.  ++.+.++....+-.+|.+... ...++++++      +.++|++.++.+..
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~------~~~~P~~~~l~~~~   97 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYK------LDSFPYVAIVDPRT   97 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcC------cCCCCEEEEEecCC
Confidence            667899999999999999998763 42  345566666666667766443 456999999      89999999996543


Q ss_pred             CC--CCCcccccCCCCHHHHHHHH
Q 014549          228 KS--SDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       228 ~~--~~~~~~y~G~~~~~~l~~fi  249 (423)
                      ..  ..-.....|..++++|+.++
T Consensus        98 g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       98 GQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             CceeEEEeccccCCCCHHHHHHhh
Confidence            10  00123567999999998875

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.07  E-value=1.3e-05  Score=67.65  Aligned_cols=42  Identities=10%  Similarity=-0.062  Sum_probs=36.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL  193 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc  193 (423)
                      .+++++|.||+.||+.|++..|.++++.++++.. +.+..|++
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence            4579999999999999999999999999999754 56666665

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.04  E-value=3.6e-05  Score=63.56  Aligned_cols=106  Identities=17%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHh-hc--cceEEEEEcc--cchhhhHHHhhCCCCccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL-EG--IANTGMVELG--DIRLATHLAERKPIGQIF  212 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l-~~--~~~~~~Vdc~--~~~~~~~l~~~~~~~~~~  212 (423)
                      .+.|++-+|+++|...+.+||.|=...-  --.-..+|.++|++. +.  .+-+|.|...  .++.+.+|+++|++.   
T Consensus         6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~---   80 (126)
T PF07912_consen    6 CVPLDELTFDKVIPKFKYVLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID---   80 (126)
T ss_dssp             SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S---
T ss_pred             eeeccceehhheeccCceEEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC---
Confidence            4889999999999999999999975431  113456899999443 32  2577777654  444678899999944   


Q ss_pred             cccCccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                       -..||.+++|..+..   ++..|  .|+.++++|..|+.++
T Consensus        81 -ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~  118 (126)
T PF07912_consen   81 -KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN  118 (126)
T ss_dssp             -CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred             -cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence             367999999996644   37888  7999999999999887

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.02  E-value=4.4e-05  Score=71.58  Aligned_cols=98  Identities=9%  Similarity=-0.079  Sum_probs=66.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHH-hhCCCCcc----------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLA-ERKPIGQI----------  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~-~~~~~~~~----------  211 (423)
                      .+++++|.||++||+.|....|.+.++.+++++. +.|..|+|+.        .......+ +++++.-.          
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            3689999999999999999999999999999865 6888899841        12233343 45443210          


Q ss_pred             -----c-------------cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 -----F-------------FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 -----~-------------~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                           +             .|...|+..++-++.+.   ...|.|..+.++|.+.|.+.
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV---v~~~~G~~~~~~le~~I~~l  233 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV---VERYPPTTSPFQIEKDIQKL  233 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE---EEEECCCCCHHHHHHHHHHH
Confidence                 0             02234776666444432   45677888888887777665

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.01  E-value=2e-05  Score=59.21  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=51.9

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~  235 (423)
                      +..|+++||++|+++.+.+++.      .+.+..+|.+++.. ..++++.++      +.++|++.+.  |.       .
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~   60 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I   60 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence            4679999999999998887652      36788889885433 244677788      8899999885  32       3


Q ss_pred             ccCCCCHHHHHHHH
Q 014549          236 FEGELSVDAVTDWF  249 (423)
Q Consensus       236 y~G~~~~~~l~~fi  249 (423)
                      ..| .+.+.|.+|+
T Consensus        61 ~~g-~~~~~i~~~i   73 (74)
T TIGR02196        61 IVG-FDPEKLDQLL   73 (74)
T ss_pred             Eee-CCHHHHHHHh
Confidence            455 3677887775

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.00  E-value=3.5e-05  Score=61.73  Aligned_cols=93  Identities=22%  Similarity=0.292  Sum_probs=66.4

Q ss_pred             ccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc
Q 014549          263 TKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (423)
Q Consensus       263 t~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~  342 (423)
                      ++.+.++.++...  ..++|.+|.+..+.....+..+|..+++.+.|+.+.     +..+.+++++. .|++++|++.+.
T Consensus         5 ~s~~~l~~~~~~~--~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~   76 (97)
T cd02981           5 TSKEELEKFLDKD--DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEE   76 (97)
T ss_pred             CCHHHHHHHhccC--CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCccc
Confidence            3333345566432  335666776543334566777888888888888874     34577778875 589999998877


Q ss_pred             ceeEecCCCChhHHHHHHHhh
Q 014549          343 KPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       343 ~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .++.|.|.++.+.|.+||..|
T Consensus        77 ~~~~y~g~~~~~~l~~fi~~~   97 (97)
T cd02981          77 EPVEYDGEFTEESLVEFIKDN   97 (97)
T ss_pred             CCccCCCCCCHHHHHHHHHhC
Confidence            888899999889999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.98  E-value=2.9e-05  Score=62.81  Aligned_cols=77  Identities=18%  Similarity=0.243  Sum_probs=57.5

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.+   ....|.+..+|..+.+.+.|+.++..+  .+.++++|+|.++||+++|+++. ....|.|..+.+.|
T Consensus        21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~l   97 (101)
T cd03003          21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDRSKESL   97 (101)
T ss_pred             EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCCC-CcccCCCCCCHHHH
Confidence            5555666532   234677888898887777777775332  37899999999999999998654 45678999999888


Q ss_pred             HHH
Q 014549          357 SEV  359 (423)
Q Consensus       357 ~~f  359 (423)
                      .+|
T Consensus        98 ~~f  100 (101)
T cd03003          98 VKF  100 (101)
T ss_pred             Hhh
Confidence            877

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=97.98  E-value=3.6e-05  Score=62.93  Aligned_cols=97  Identities=12%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             cccchhhhhhhhhcCCCc-eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+ +++.+.+  .++ ++|.|+++.   +....+.+..++..+.+.+.++.++....+...++++|+|.++|++++|
T Consensus         5 l~~~~-~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           5 LTPKN-FDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             cchhh-HHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence            34444 3444433  234 455555542   2335677888888887777777776544334779999999999999999


Q ss_pred             cCCC----cceeEecCCCChhHHHHHHH
Q 014549          338 KDPG----VKPVVYYGSFNNSRLSEVME  361 (423)
Q Consensus       338 k~~~----~~~~~y~g~~~~~~l~~fi~  361 (423)
                      +++.    ..+..|.|..+.+.|.+||.
T Consensus        82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          82 RPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             eCCCcccccccccccCccCHHHHHHHhC
Confidence            8876    35677899999999999983

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.97  E-value=2.2e-05  Score=60.29  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccccc
Q 014549          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE  237 (423)
Q Consensus       158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~  237 (423)
                      |++++++|++|..+...+++++..+.  +.+-.++..   ...++ .+||      |.++|++++  +|+.      .|.
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~---~~~~~-~~yg------v~~vPalvI--ng~~------~~~   62 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIE---DFEEI-EKYG------VMSVPALVI--NGKV------VFV   62 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETT---THHHH-HHTT-------SSSSEEEE--TTEE------EEE
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEcc---CHHHH-HHcC------CCCCCEEEE--CCEE------EEE
Confidence            45689999999999999999999984  566555654   34456 8999      999999954  6654      788


Q ss_pred             C-CCCHHHHHHHHH
Q 014549          238 G-ELSVDAVTDWFA  250 (423)
Q Consensus       238 G-~~~~~~l~~fi~  250 (423)
                      | ..+.+.|.+|++
T Consensus        63 G~~p~~~el~~~l~   76 (76)
T PF13192_consen   63 GRVPSKEELKELLE   76 (76)
T ss_dssp             SS--HHHHHHHHHH
T ss_pred             ecCCCHHHHHHHhC
Confidence            9 778888888873

...

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.95  E-value=5.4e-05  Score=68.84  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC-----------ccccccCccEE
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG-----------QIFFRRGLPSL  220 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~-----------~~~~i~~~Pti  220 (423)
                      .+++++|.||++||+.|+...|...++.+...  +.+..|+.+......+..++++++           ..|++.+.|+.
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~  150 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG  150 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence            56789999999999999999999999876542  334444433222222333333321           23448899987


Q ss_pred             EEeCCCCCCCCCcccccCC-CCHHHHHHHHH
Q 014549          221 VAFPPGCKSSDCMTRFEGE-LSVDAVTDWFA  250 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~-~~~~~l~~fi~  250 (423)
                      +++-+++.     ..+.|. .+.+.+.+.+.
T Consensus       151 ~lID~~G~-----I~~~g~~~~~~~le~ll~  176 (189)
T TIGR02661       151 VLLDQDGK-----IRAKGLTNTREHLESLLE  176 (189)
T ss_pred             EEECCCCe-----EEEccCCCCHHHHHHHHH
Confidence            77654333     245553 24455555554

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.94  E-value=0.00025  Score=75.25  Aligned_cols=184  Identities=15%  Similarity=0.078  Sum_probs=114.6

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeC-CCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-PGCKSSD  231 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~-~g~~~~~  231 (423)
                      +.+.|+.|+.+.|..|..+....++++ .+.+.+++-..|..   ....++++|+      |...|++.++. +|...  
T Consensus       366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~---~~~~~~~~~~------v~~~P~~~i~~~~~~~~--  433 (555)
T TIGR03143       366 NPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRG---EEPESETLPK------ITKLPTVALLDDDGNYT--  433 (555)
T ss_pred             CCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccc---cchhhHhhcC------CCcCCEEEEEeCCCccc--
Confidence            445678888999999999998888888 56677888778877   3455889999      88999999995 44332  


Q ss_pred             CcccccCCCCHHHHHHHHHHhhc-cCCceeecccchhhhhhhhhcCCCceEEEEEe-cCCCCCc--hHHHHHHHhccccc
Q 014549          232 CMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFS-KTGERAS--PFVRQISRNYWAYA  307 (423)
Q Consensus       232 ~~~~y~G~~~~~~l~~fi~~~~~-~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~-~~~~~~~--~~~~~~a~~~~~~~  307 (423)
                       ...|.|-..-..+-.|+...+. ..+... + +++ ..+.+..-+...-+-+|.+ .|..|+.  ..+..++... ..+
T Consensus       434 -~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l-~~~-~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i  508 (555)
T TIGR03143       434 -GLKFHGVPSGHELNSFILALYNAAGPGQP-L-GEE-LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNV  508 (555)
T ss_pred             -ceEEEecCccHhHHHHHHHHHHhcCCCCC-C-CHH-HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCc
Confidence             4689887777777777765421 111111 2 222 1223333211111223344 3445543  2234455442 234


Q ss_pred             eEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549          308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (423)
Q Consensus       308 ~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi  360 (423)
                      ..-.+...  +-++++++|+|.+.|++++   ++.  +.+.|..+.++|.+||
T Consensus       509 ~~~~i~~~--~~~~~~~~~~v~~vP~~~i---~~~--~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       509 EAEMIDVS--HFPDLKDEYGIMSVPAIVV---DDQ--QVYFGKKTIEEMLELI  554 (555)
T ss_pred             eEEEEECc--ccHHHHHhCCceecCEEEE---CCE--EEEeeCCCHHHHHHhh
Confidence            43333221  2378999999999999988   332  3467888888888776

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.93  E-value=3.9e-05  Score=63.73  Aligned_cols=78  Identities=12%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHH-hhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549          280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWW-NTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (423)
Q Consensus       280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~-~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~  355 (423)
                      ++|.|+++.   ++...|.+..+|..+.+.+.|+.|+..  ....++ ++|+|.++|||++|+++. .+..|.|.++.+.
T Consensus        32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d--~~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~~~~~  108 (113)
T cd03006          32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW--WPQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPMRAPY  108 (113)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC--CChHHHHHhcCCcccCEEEEEECCc-cceEEeCCCCHHH
Confidence            455566653   233567888899888777777777532  135677 589999999999998654 5788999999999


Q ss_pred             HHHHH
Q 014549          356 LSEVM  360 (423)
Q Consensus       356 l~~fi  360 (423)
                      |..|+
T Consensus       109 i~~~~  113 (113)
T cd03006         109 MEKFV  113 (113)
T ss_pred             HHhhC
Confidence            88773

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.93  E-value=4.4e-05  Score=62.58  Aligned_cols=93  Identities=12%  Similarity=0.180  Sum_probs=60.7

Q ss_pred             cccchhhhhhhhhcCCCceEE-EEEecC---CCCCchHHHHHHHhccc------cceEEEEEccccccHHHHhhcCCCCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKV-IFFSKT---GERASPFVRQISRNYWA------YASFAFVLWREEESSIWWNTFEVESA  331 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~v-l~f~~~---~~~~~~~~~~~a~~~~~------~~~f~~v~~~~~~~~~l~~~f~v~~~  331 (423)
                      +++++ +++.+...   ++++ .|+++.   +....|.+..++..+++      .+.++.+...  ...+++++|+|.++
T Consensus         6 l~~~~-f~~~i~~~---~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~   79 (108)
T cd02996           6 LTSGN-IDDILQSA---ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--KESDIADRYRINKY   79 (108)
T ss_pred             cCHhh-HHHHHhcC---CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--CCHHHHHhCCCCcC
Confidence            45444 34445332   3444 455542   23345677777765532      2455555422  23789999999999


Q ss_pred             CeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (423)
Q Consensus       332 Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi  360 (423)
                      |++++|+++......|.|..+.+.|.+||
T Consensus        80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          80 PTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            99999998765567789999999999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=1e-05  Score=73.15  Aligned_cols=54  Identities=19%  Similarity=0.417  Sum_probs=48.2

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHH-HcCC
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYE-LLTD   89 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~-~L~~   89 (423)
                      -..+|.+|||..+++..++|.||.+|++++|||...  .+.++|.+|.+||. +|+.
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999754  46788999999999 7763

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.91  E-value=4.7e-05  Score=60.95  Aligned_cols=87  Identities=13%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             cccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCC
Q 014549          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP  225 (423)
Q Consensus       146 f~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~  225 (423)
                      .+..+...++++|-|+.++|+   .....|.++|+.+...+.||.+.-.      +++++++      +. -|++.+|++
T Consensus        10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~------~~~~~~~------~~-~~~i~l~~~   73 (97)
T cd02981          10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK------EVAKKLK------VK-PGSVVLFKP   73 (97)
T ss_pred             HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH------HHHHHcC------CC-CCceEEeCC
Confidence            445678899999999999887   5678999999999888889887733      2666665      54 499999987


Q ss_pred             CCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          226 GCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       226 g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      ....   ...|.|..+.++|.+|+..
T Consensus        74 ~~~~---~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          74 FEEE---PVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             cccC---CccCCCCCCHHHHHHHHHh
Confidence            6332   5679999999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.89  E-value=2.4e-05  Score=66.25  Aligned_cols=68  Identities=13%  Similarity=0.113  Sum_probs=43.2

Q ss_pred             CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      .++++++|.||++||++|+.|....   .++++.++.......++.+..  ...+. . .      ..++||++++.++.
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~t--d~~~~-~-~------g~~vPtivFld~~g   90 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETT--DKNLS-P-D------GQYVPRIMFVDPSL   90 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccC--CCCcC-c-c------CcccCeEEEECCCC
Confidence            6799999999999999999999853   244555544333334444311  01111 1 1      35899999996654


Q ss_pred             C
Q 014549          228 K  228 (423)
Q Consensus       228 ~  228 (423)
                      .
T Consensus        91 ~   91 (130)
T cd02960          91 T   91 (130)
T ss_pred             C
Confidence            3

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.84  E-value=0.00012  Score=67.06  Aligned_cols=58  Identities=7%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHhhCCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKPIG  209 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~~~~~~  209 (423)
                      .+++++|.|||+||+.|++-.|...++.+++++. +.|..|+|++        .......++++++.
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~  104 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK  104 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC
Confidence            3679999999999999999999999999999865 6888898841        22345567777643

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.83  E-value=0.00013  Score=59.30  Aligned_cols=95  Identities=13%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             cccchhhhhhhh-hcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCC
Q 014549          262 YTKESMGKNFLA-KTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP  340 (423)
Q Consensus       262 it~~~~~~~fl~-~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~  340 (423)
                      +++.+.++.|+. ..  ..++|.+|.+..+.....+..+|..++..+.|+...     ...+.+.+++. .|+++++++.
T Consensus         5 i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~   76 (102)
T cd03066           5 INSERELQAFENIED--DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF   76 (102)
T ss_pred             cCCHHHHHHHhcccC--CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC
Confidence            444444678885 43  235666776543333456777888888888887764     34577888875 6999999886


Q ss_pred             CcceeEe-cCCCChhHHHHHHHhhc
Q 014549          341 GVKPVVY-YGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       341 ~~~~~~y-~g~~~~~~l~~fi~~~~  364 (423)
                      +..++.| .|..+.+.|.+||..++
T Consensus        77 ~e~~~~y~~g~~~~~~l~~fi~~~~  101 (102)
T cd03066          77 MEEPVTIPDKPYSEEELVDFVEEHK  101 (102)
T ss_pred             CCCCcccCCCCCCHHHHHHHHHHhc
Confidence            6777789 88889999999999864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=97.82  E-value=7.7e-05  Score=64.47  Aligned_cols=77  Identities=12%  Similarity=0.115  Sum_probs=57.0

Q ss_pred             CCCcEEEEEecC-CCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCC------------cccccc--
Q 014549          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIG------------QIFFRR--  215 (423)
Q Consensus       152 ~~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~------------~~~~i~--  215 (423)
                      .+++++|.||+. ||+.|+.-.|...++++.++.. +.+..|+.+.+....+.+++++..            ..+.+.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            578899999999 9999999999999998887665 677777766544445555555432            345577  


Q ss_pred             -------CccEEEEeCCCCC
Q 014549          216 -------GLPSLVAFPPGCK  228 (423)
Q Consensus       216 -------~~Pti~~f~~g~~  228 (423)
                             ++|+++++-.+..
T Consensus       107 ~~~~~~~~~P~~~lId~~G~  126 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDGK  126 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTSB
T ss_pred             cccccCCeecEEEEEECCCE
Confidence                   8998877655444

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.81  E-value=0.00012  Score=59.79  Aligned_cols=93  Identities=14%  Similarity=0.217  Sum_probs=65.6

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe----
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL----  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf----  337 (423)
                      +++.+.++.|+..  ...++|.||.+..+.....+..+|..+++.+.|+...     ...+.+++++  .|++++|    
T Consensus         5 i~s~~~l~~f~~~--~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~   75 (104)
T cd03069           5 LRTEAEFEKFLSD--DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPR   75 (104)
T ss_pred             cCCHHHHHHHhcc--CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechh
Confidence            3333335677753  3346666776544334566777888888888888764     3457888888  5889999    


Q ss_pred             --cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 --KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 --k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                        +..+...+.|.|+++.+.|.+||..+
T Consensus        76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          76 LSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hhcccCcccccccCcCCHHHHHHHHHhh
Confidence              44456667799999989999999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.80  E-value=6.5e-05  Score=60.58  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc-cchhhhHHHhhCCCCccccccCccEEEEeCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK  228 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~  228 (423)
                      ..+.++.||++||++|+.+.|...++++.+...+.+..+|.. .++   .+...++..    +..+|++.++.++..
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~----~~~~p~~~~~~~~~~  101 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP---DLAAEFGVA----VRSIPTLLLFKDGKE  101 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh---HHHHHHhhh----hccCCeEEEEeCcch
Confidence            778999999999999999999999999999887788888885 333   355555411    568899998888754

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.80  E-value=0.00011  Score=59.31  Aligned_cols=79  Identities=13%  Similarity=0.096  Sum_probs=59.0

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.+   ....+.+..++..+.+.+.++.+...  +...++++|+|.++|++++|+++...+..|.|..+.+.|
T Consensus        21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l   98 (103)
T cd03001          21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAI   98 (103)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHH
Confidence            4455555422   23456777788887777777777532  236799999999999999998776677889999999999


Q ss_pred             HHHH
Q 014549          357 SEVM  360 (423)
Q Consensus       357 ~~fi  360 (423)
                      .+|+
T Consensus        99 ~~~~  102 (103)
T cd03001          99 VSAA  102 (103)
T ss_pred             HHHh
Confidence            9987

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=97.77  E-value=0.00023  Score=57.04  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=57.9

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccc--cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~  354 (423)
                      +++.|+++.+   ....+.+..++..+..  .+.++.+..  .....++++|+|.+.|++++|++++. +..|.|..+.+
T Consensus        16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~   92 (102)
T TIGR01126        16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGRDLE   92 (102)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCCCHH
Confidence            4555555432   2234666667777765  355555532  12378999999999999999998766 77889999999


Q ss_pred             HHHHHHHhh
Q 014549          355 RLSEVMEQN  363 (423)
Q Consensus       355 ~l~~fi~~~  363 (423)
                      .|..||+++
T Consensus        93 ~l~~~i~~~  101 (102)
T TIGR01126        93 AIVEFVNEK  101 (102)
T ss_pred             HHHHHHHhc
Confidence            999999874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.75  E-value=0.00013  Score=63.72  Aligned_cols=41  Identities=7%  Similarity=-0.162  Sum_probs=36.1

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      +++++|.||+.||+ |..-.|.++++.+++++. +.|..|+++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            68999999999999 999999999999999754 678788774

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.75  E-value=0.00038  Score=59.10  Aligned_cols=96  Identities=16%  Similarity=0.146  Sum_probs=69.0

Q ss_pred             hhhhhhhcCCCceEEEEEecCCCC------CchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEecCC
Q 014549          268 GKNFLAKTGPHKVKVIFFSKTGER------ASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP  340 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~~~~~~------~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~  340 (423)
                      ++.|+....   ..|+|+..+..+      ....+..++.+|.+ .+.++.|....  .+.++.+|||.+.||+++|+++
T Consensus        27 ~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~LA~~fgV~siPTLl~FkdG  101 (132)
T PRK11509         27 LDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTGG  101 (132)
T ss_pred             HHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHHHHHcCCccCCEEEEEECC
Confidence            677886544   677787654322      13456778888863 47788886443  4789999999999999999976


Q ss_pred             CcceeEecCCCChhHHHHHHHhhccccCc
Q 014549          341 GVKPVVYYGSFNNSRLSEVMEQNKLQELP  369 (423)
Q Consensus       341 ~~~~~~y~g~~~~~~l~~fi~~~~~~~lp  369 (423)
                      ... -...|..+.+.+.+||++..-...|
T Consensus       102 k~v-~~i~G~~~k~~l~~~I~~~L~~~~~  129 (132)
T PRK11509        102 NYR-GVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_pred             EEE-EEEeCcCCHHHHHHHHHHHhcCcCc
Confidence            533 3457888999999999986544333

>PLN02412 probable glutathione peroxidase

Probab=97.73  E-value=0.00025  Score=63.16  Aligned_cols=42  Identities=10%  Similarity=-0.099  Sum_probs=38.1

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      +++++|.||++||+.|+.-.|.+.++.+++++. +.|..|+|+
T Consensus        29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            589999999999999999999999999999876 788889885

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=97.72  E-value=0.00017  Score=59.25  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhcccc-ceEEEEEccccccHHHHh-hcCCCCCCeEEEecCCCcceeEecCC-CCh
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIVFLKDPGVKPVVYYGS-FNN  353 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~-~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~~  353 (423)
                      ++|.|+++.+   ....+.+..++..+.+. +.++.+.... +...++. .|++.++||+++|+++...+..|.|+ ++.
T Consensus        24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~  102 (109)
T cd02993          24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-EQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDV  102 (109)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-cchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCH
Confidence            5555665432   33456777788887653 5666665322 1245665 59999999999999887788889985 798


Q ss_pred             hHHHHHH
Q 014549          354 SRLSEVM  360 (423)
Q Consensus       354 ~~l~~fi  360 (423)
                      ++|..||
T Consensus       103 ~~l~~f~  109 (109)
T cd02993         103 DSLLMFV  109 (109)
T ss_pred             HHHHhhC
Confidence            9998885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.66  E-value=0.00014  Score=55.35  Aligned_cols=72  Identities=14%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhh--CCCCccccccCccEEEEeCCCCCCCCCcc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPGCKSSDCMT  234 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~--~~~~~~~~i~~~Pti~~f~~g~~~~~~~~  234 (423)
                      ++.|+++||++|+++.+.+++..      +.+-.+|.+++........+  ++      +.++|++ ++.+|..      
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g~~------   62 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADGSF------   62 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCCeE------
Confidence            57899999999999999886653      34556887754432222222  25      7899997 4666643      


Q ss_pred             cccCCCCHHHHHHHH
Q 014549          235 RFEGELSVDAVTDWF  249 (423)
Q Consensus       235 ~y~G~~~~~~l~~fi  249 (423)
                      .  ...+..++.+.+
T Consensus        63 l--~~~~~~~~~~~l   75 (77)
T TIGR02200        63 L--TNPSAAQVKAKL   75 (77)
T ss_pred             e--cCCCHHHHHHHh
Confidence            1  234455665544

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.66  E-value=0.00044  Score=60.47  Aligned_cols=41  Identities=15%  Similarity=-0.062  Sum_probs=37.1

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL  193 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc  193 (423)
                      +++++|.|+++||+.|++-.|.+.++.++++.. +.|..|+|
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            578999999999999999999999999999864 68888987

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=97.66  E-value=0.00016  Score=58.54  Aligned_cols=77  Identities=14%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.   +....|.+..++..+.+ +.++.+...+ +...++++|+|.++||+++|+++  ....|.|..+.+.|
T Consensus        21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~~l   96 (100)
T cd02999          21 TAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTLDSL   96 (100)
T ss_pred             EEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCHHHH
Confidence            455566543   23457888888888754 5555553221 24789999999999999999876  56788999999999


Q ss_pred             HHHH
Q 014549          357 SEVM  360 (423)
Q Consensus       357 ~~fi  360 (423)
                      .+||
T Consensus        97 ~~f~  100 (100)
T cd02999          97 AAFY  100 (100)
T ss_pred             HhhC
Confidence            9885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=97.66  E-value=0.00024  Score=67.04  Aligned_cols=109  Identities=13%  Similarity=0.153  Sum_probs=81.6

Q ss_pred             hhhhhhhhhcCCCceEEEEEec---CCCCCchHHHHHHHhccccceEEEEEcccccc-HHHHhhcCCCCCCeEEEecCCC
Q 014549          266 SMGKNFLAKTGPHKVKVIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPG  341 (423)
Q Consensus       266 ~~~~~fl~~~~~~~~~vl~f~~---~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~-~~l~~~f~v~~~Ptl~lfk~~~  341 (423)
                      ++.+.|....++..|+|-|+.+   +++.+.|.+......++..-.-..|..-+|+. +.++.+|+|.++|||.+||+  
T Consensus        32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--  109 (468)
T KOG4277|consen   32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--  109 (468)
T ss_pred             hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--
Confidence            3346777666678899999885   56778999877665554433334555567766 88999999999999999985  


Q ss_pred             cceeEecCCCChhHHHHHHHhhccccCcccccccc
Q 014549          342 VKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTS  376 (423)
Q Consensus       342 ~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~~~~  376 (423)
                      .....|.|.++.++|.+|...-.-+.+-.+.....
T Consensus       110 d~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~  144 (468)
T KOG4277|consen  110 DHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQI  144 (468)
T ss_pred             CeeeecCCCccHHHHHHHHHhcccceeeecChhHH
Confidence            35567899999999999998866666666665333

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.63  E-value=0.00021  Score=66.22  Aligned_cols=86  Identities=22%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--------hhhhHHHhhCCCCccccccCccEEEEe
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--------~~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      .++.-|+.||.+.|+.|+.++|+...+++.+.  +.+-.|+.|..        .....++++++      |..+|+++++
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv  190 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV  190 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence            47788999999999999999999999999884  45555555421        12355888888      9999999999


Q ss_pred             CCCCCCCCCcccccCCCCHHHHHH
Q 014549          224 PPGCKSSDCMTRFEGELSVDAVTD  247 (423)
Q Consensus       224 ~~g~~~~~~~~~y~G~~~~~~l~~  247 (423)
                      .++...  -...-.|..+.++|.+
T Consensus       191 ~~~~~~--~~pv~~G~~s~~~L~~  212 (215)
T PF13728_consen  191 NPNTKK--WYPVSQGFMSLDELED  212 (215)
T ss_pred             ECCCCe--EEEEeeecCCHHHHHH
Confidence            887631  0112248888888875

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.62  E-value=0.00024  Score=72.89  Aligned_cols=100  Identities=11%  Similarity=0.145  Sum_probs=68.2

Q ss_pred             cccchhhhhhhhhcCCCc-eEEEEEecC---CCCCchHHHHHHHhcccc-ceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+ +++.+.....++ ++|.|+.+.   ++...|.+..+|.+|.+. +.|+.++.........+++|+|.++||+++
T Consensus       356 L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~  434 (463)
T TIGR00424       356 LSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF  434 (463)
T ss_pred             CCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence            56555 455553112233 555566653   233467788888888654 667777543222233457899999999999


Q ss_pred             ecCCCcceeEec-CCCChhHHHHHHHh
Q 014549          337 LKDPGVKPVVYY-GSFNNSRLSEVMEQ  362 (423)
Q Consensus       337 fk~~~~~~~~y~-g~~~~~~l~~fi~~  362 (423)
                      |+++...++.|. |.++.+.|..||+.
T Consensus       435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       435 FPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             EECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            999877888897 58999999999985

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00025  Score=60.92  Aligned_cols=81  Identities=16%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             eEEEEEec-CC--CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSK-TG--ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~-~~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++ ++  +.+.|.+..++.+|.+.++|+.+++.+  ..+++.+|+|+..||+++|++|... ..+.|..+.+.|
T Consensus        64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~l  140 (150)
T KOG0910|consen   64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQL  140 (150)
T ss_pred             EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHHH
Confidence            56667665 22  346788999999999999999887443  3689999999999999999976544 355788888889


Q ss_pred             HHHHHhh
Q 014549          357 SEVMEQN  363 (423)
Q Consensus       357 ~~fi~~~  363 (423)
                      .+||++.
T Consensus       141 ~~~i~k~  147 (150)
T KOG0910|consen  141 RSLIKKF  147 (150)
T ss_pred             HHHHHHH
Confidence            9998873

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=97.56  E-value=0.0003  Score=56.51  Aligned_cols=77  Identities=23%  Similarity=0.284  Sum_probs=55.4

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccc---cceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~  352 (423)
                      ++|.|+++.+   ....|.+..++.++.+   .+.++.+.   ++ ...++++|+|.++|++++|+++. ....|.|..+
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd---~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~   94 (102)
T cd03005          19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVD---CTQHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRD   94 (102)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEE---CCCChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCC
Confidence            5666666532   2346777778888765   45555553   43 36799999999999999997654 5567899999


Q ss_pred             hhHHHHHH
Q 014549          353 NSRLSEVM  360 (423)
Q Consensus       353 ~~~l~~fi  360 (423)
                      .+.|.+||
T Consensus        95 ~~~l~~~i  102 (102)
T cd03005          95 LDSLKEFV  102 (102)
T ss_pred             HHHHHhhC
Confidence            88888875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.55  E-value=0.00056  Score=60.93  Aligned_cols=96  Identities=11%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccc--------hhhhHHHhhCCCC------------c
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI--------RLATHLAERKPIG------------Q  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~--------~~~~~l~~~~~~~------------~  210 (423)
                      .+++++|.||++||+.|.+..|...++.+++.+ .+.|..|.++..        .......+++++.            .
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            568899999999999999999999999999974 478888877531        1112222232221            2


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccC-----------CCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-----------ELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G-----------~~~~~~l~~fi~~~  252 (423)
                      .+++...|+++++-++...     .|.|           ..+.+.+.+-|...
T Consensus       104 ~~~v~~~P~~~lid~~G~v-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  151 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKL-----VYRGRIDDSRPGNDPPVTGRDLRAALDAL  151 (171)
T ss_pred             HcCCCcCCcEEEECCCCeE-----EEeecccCCcccccccccHHHHHHHHHHH
Confidence            3348899999999654432     3332           23556677777655

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.52  E-value=0.0005  Score=56.75  Aligned_cols=80  Identities=14%  Similarity=0.065  Sum_probs=55.9

Q ss_pred             eEEEEEecC---CCCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549          280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (423)
Q Consensus       280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~  355 (423)
                      ++|.|+++.   +....|.+..++..+.+ .+.++.|...  ..+.++++|+|.++||+++|+++ .....+.|..+.+.
T Consensus        27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~~~~  103 (111)
T cd02963          27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERRLARKLGAHSVPAIVGIING-QVTFYHDSSFTKQH  103 (111)
T ss_pred             EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHHHHHHcCCccCCEEEEEECC-EEEEEecCCCCHHH
Confidence            444455542   23346777778888764 3666666422  23679999999999999999855 34444578888899


Q ss_pred             HHHHHHh
Q 014549          356 LSEVMEQ  362 (423)
Q Consensus       356 l~~fi~~  362 (423)
                      |.+||.+
T Consensus       104 l~~~i~~  110 (111)
T cd02963         104 VVDFVRK  110 (111)
T ss_pred             HHHHHhc
Confidence            9999875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.52  E-value=0.00013  Score=69.75  Aligned_cols=103  Identities=15%  Similarity=0.266  Sum_probs=70.7

Q ss_pred             eeEecc-CCcccccC---CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          138 FNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       138 v~~L~~-~nf~~~v~---~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      |.+|+. +.|-+.|.   ....++|.||.|.+..|..+...+..+|..+.. ++|.+|...   ..+ ++.+|+      
T Consensus       127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~---~~~-~~~~f~------  195 (265)
T PF02114_consen  127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRAS---KCP-ASENFP------  195 (265)
T ss_dssp             EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEEC---GCC-TTTTS-------
T ss_pred             EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehh---ccC-cccCCc------
Confidence            788865 67877773   345688999999999999999999999998654 799999877   322 567777      


Q ss_pred             ccCccEEEEeCCCCCCCCCccccc---C-CCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFE---G-ELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~---G-~~~~~~l~~fi~~~  252 (423)
                      ++..|||++|++|... .+...+.   | ..+.++|-.|+.+.
T Consensus       196 ~~~LPtllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  196 DKNLPTLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             TTC-SEEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             ccCCCEEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            8999999999998641 1111221   2 56778888888776

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.52  E-value=0.0006  Score=54.31  Aligned_cols=79  Identities=15%  Similarity=0.255  Sum_probs=55.3

Q ss_pred             eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.   +....+.+..++..+.+.+.++.+....  ...++++|+|.+.|++++|+++ .....+.|..+.+.|
T Consensus        15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~~~l   91 (96)
T cd02956          15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAG-QPVDGFQGAQPEEQL   91 (96)
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCC-EEeeeecCCCCHHHH
Confidence            444455542   2234667777887776666666665332  3789999999999999999854 333457898888999


Q ss_pred             HHHHH
Q 014549          357 SEVME  361 (423)
Q Consensus       357 ~~fi~  361 (423)
                      .+||+
T Consensus        92 ~~~l~   96 (96)
T cd02956          92 RQMLD   96 (96)
T ss_pred             HHHhC
Confidence            98874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.50  E-value=0.00052  Score=54.35  Aligned_cols=79  Identities=19%  Similarity=0.230  Sum_probs=56.1

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhc--cccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~  354 (423)
                      ++|.|+++.+   ....+.+..++..+  ...+.|+.+....  ...++++|+|.+.|++++|++++.....|.|..+.+
T Consensus        18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~   95 (101)
T cd02961          18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLE   95 (101)
T ss_pred             EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHH
Confidence            5555555422   22356666677777  4566666664322  378999999999999999987766667788988888


Q ss_pred             HHHHHH
Q 014549          355 RLSEVM  360 (423)
Q Consensus       355 ~l~~fi  360 (423)
                      .|.+|+
T Consensus        96 ~i~~~~  101 (101)
T cd02961          96 SLVEFI  101 (101)
T ss_pred             HHHhhC
Confidence            888774

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=97.50  E-value=0.00052  Score=55.27  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=50.8

Q ss_pred             CchHHHHHHHhcc--ccceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549          292 ASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (423)
Q Consensus       292 ~~~~~~~~a~~~~--~~~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi  360 (423)
                      ..+.+..++..+.  ..+.++.+.  -.. ...++++|+|.++|++++|++++.....|.|.++.+.|.+||
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~id--~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          36 LAPEYEKLAAVFANEDDVVIAKVD--ADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             hChHHHHHHHHhCCCCCEEEEEEE--CCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence            4577777887765  234444543  223 468999999999999999988766777889999999998885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.46  E-value=0.00095  Score=54.99  Aligned_cols=84  Identities=17%  Similarity=0.146  Sum_probs=57.5

Q ss_pred             hhhhhhhcCCCceEEEEEe-c---CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC
Q 014549          268 GKNFLAKTGPHKVKVIFFS-K---TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~-~---~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~  341 (423)
                      +++++.   .+.++|++|. +   +.+|  ..|.+..+|.+|.+.+.|+.+...+  .+.++.+|+|.+.||+++|+++.
T Consensus        20 ~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~sIPTli~fkdGk   94 (111)
T cd02965          20 LDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLRTPALLFFRDGR   94 (111)
T ss_pred             HHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCE
Confidence            455553   2336666665 3   2222  4678888999998777787876443  46899999999999999999763


Q ss_pred             cceeEecCCCChhHHH
Q 014549          342 VKPVVYYGSFNNSRLS  357 (423)
Q Consensus       342 ~~~~~y~g~~~~~~l~  357 (423)
                       ....+.|..+.+.+.
T Consensus        95 -~v~~~~G~~~~~e~~  109 (111)
T cd02965          95 -YVGVLAGIRDWDEYV  109 (111)
T ss_pred             -EEEEEeCccCHHHHh
Confidence             333446777766553

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.43  E-value=0.0009  Score=53.87  Aligned_cols=80  Identities=16%  Similarity=0.218  Sum_probs=54.6

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhcc--ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~  354 (423)
                      ++|.|+++.+   ....+.+..++..+.  ..+.++.+.........++++|+|.++|++++|+++. ....|.|..+.+
T Consensus        20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~   98 (104)
T cd02997          20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGERTAE   98 (104)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCCCHH
Confidence            4555665422   223566666776665  3355555554433257899999999999999998654 456788998988


Q ss_pred             HHHHHH
Q 014549          355 RLSEVM  360 (423)
Q Consensus       355 ~l~~fi  360 (423)
                      .|.+||
T Consensus        99 ~l~~~l  104 (104)
T cd02997          99 DIIEFM  104 (104)
T ss_pred             HHHhhC
Confidence            888875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00028  Score=56.37  Aligned_cols=49  Identities=24%  Similarity=0.206  Sum_probs=43.3

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCh
Q 014549           41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP   90 (423)
Q Consensus        41 ~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~   90 (423)
                      .||||+++++.+.||.|+|+.-...|||+. +..=--.+|++|+++|...
T Consensus        60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence            589999999999999999999999999997 5555667899999998643

>PLN02309 5'-adenylylsulfate reductase

Probab=97.42  E-value=0.00059  Score=70.00  Aligned_cols=99  Identities=10%  Similarity=0.150  Sum_probs=67.6

Q ss_pred             cccchhhhhhhhh-cCCCceEEEEEecC---CCCCchHHHHHHHhcccc-ceEEEEEccccccHHHHh-hcCCCCCCeEE
Q 014549          262 YTKESMGKNFLAK-TGPHKVKVIFFSKT---GERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV  335 (423)
Q Consensus       262 it~~~~~~~fl~~-~~~~~~~vl~f~~~---~~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~-~f~v~~~Ptl~  335 (423)
                      ++.++ +++.+.. .....++|.|+.+.   |+...|.+..++..|... +.|+.++... ....++. +|+|.++|||+
T Consensus       350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil  427 (457)
T PLN02309        350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTIL  427 (457)
T ss_pred             CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEE
Confidence            55554 4444432 22233566666653   233467778888887643 6677665331 1356775 69999999999


Q ss_pred             EecCCCcceeEecC-CCChhHHHHHHHh
Q 014549          336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ  362 (423)
Q Consensus       336 lfk~~~~~~~~y~g-~~~~~~l~~fi~~  362 (423)
                      +|+++...++.|.| .++.++|..||+.
T Consensus       428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence            99998888999974 7999999999986

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.40  E-value=0.00068  Score=54.52  Aligned_cols=78  Identities=18%  Similarity=0.248  Sum_probs=55.5

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhcccc--ceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC-cceeEecCCCCh
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSFNN  353 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~--~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~-~~~~~y~g~~~~  353 (423)
                      ++|.|+++.+   ....+.+..++..+.+.  +.++.++   ++..+++..+++.++|++++|+++. ..+..|.|..+.
T Consensus        21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id---~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~   97 (104)
T cd02995          21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMD---ATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTL   97 (104)
T ss_pred             EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEe---CcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCcCH
Confidence            4555665432   33457777788777653  4555553   4445688899999999999998876 456778999999


Q ss_pred             hHHHHHH
Q 014549          354 SRLSEVM  360 (423)
Q Consensus       354 ~~l~~fi  360 (423)
                      ..|.+||
T Consensus        98 ~~l~~fi  104 (104)
T cd02995          98 EDLIKFI  104 (104)
T ss_pred             HHHHhhC
Confidence            9999886

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.40  E-value=0.00077  Score=55.77  Aligned_cols=101  Identities=13%  Similarity=0.052  Sum_probs=77.5

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHH---hhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~---l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |-++|.+|+..+..+.-+..+.|+.+  ..-..+.+.++++|+.   ++|.+.|..+|.+   ......+.+|      +
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~---~~~~~~~~fg------l   69 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGD---KFRHPLLHLG------K   69 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEech---HhhhHHHHcC------C
Confidence            45688888887787777777777733  2346789999999999   9999999999999   4444788899      6


Q ss_pred             cC--ccEEEEeCCCCCCCCCccc-ccCCCCHHHHHHHHHHh
Q 014549          215 RG--LPSLVAFPPGCKSSDCMTR-FEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~--~Pti~~f~~g~~~~~~~~~-y~G~~~~~~l~~fi~~~  252 (423)
                      ++  +|.+.+.......   ... +.+..+.++|.+|+.+.
T Consensus        70 ~~~~~P~i~i~~~~~~~---Ky~~~~~~~t~~~i~~Fv~~~  107 (111)
T cd03072          70 TPADLPVIAIDSFRHMY---LFPDFEDVYVPGKLKQFVLDL  107 (111)
T ss_pred             CHhHCCEEEEEcchhcC---cCCCCccccCHHHHHHHHHHH
Confidence            65  8999998764311   112 45889999999999876

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00057  Score=65.09  Aligned_cols=98  Identities=17%  Similarity=0.292  Sum_probs=70.6

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +|..++....+..+ ..+|+++ |.++.   |..+.|.+..++.+|++.+.++.|+...  .+.++..|||.+.|++++|
T Consensus        28 vT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--~p~vAaqfgiqsIPtV~af  104 (304)
T COG3118          28 VTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--EPMVAAQFGVQSIPTVYAF  104 (304)
T ss_pred             chHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--chhHHHHhCcCcCCeEEEe
Confidence            56666555555443 3445555 44432   2335788888999999999888885322  3889999999999999999


Q ss_pred             cCCCccee-EecCCCChhHHHHHHHhhc
Q 014549          338 KDPGVKPV-VYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       338 k~~~~~~~-~y~g~~~~~~l~~fi~~~~  364 (423)
                      +++.  |+ -|.|....+.|.+|+..+.
T Consensus       105 ~dGq--pVdgF~G~qPesqlr~~ld~~~  130 (304)
T COG3118         105 KDGQ--PVDGFQGAQPESQLRQFLDKVL  130 (304)
T ss_pred             eCCc--CccccCCCCcHHHHHHHHHHhc
Confidence            8753  44 3688888889999999853

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.37  E-value=0.0011  Score=53.42  Aligned_cols=79  Identities=18%  Similarity=0.087  Sum_probs=57.4

Q ss_pred             eEEEEEecC---CCCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549          280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (423)
Q Consensus       280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~  355 (423)
                      ++|.|+++.   +....|.+..++..+.. .+.++.+...  +.+.++++|+|.++||+++|+++.  ...|.|..+.+.
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~   94 (101)
T cd02994          19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QEPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED   94 (101)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CCHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence            777777753   23346777777766543 3566666432  236799999999999999998764  467899999999


Q ss_pred             HHHHHHh
Q 014549          356 LSEVMEQ  362 (423)
Q Consensus       356 l~~fi~~  362 (423)
                      |..||++
T Consensus        95 l~~~i~~  101 (101)
T cd02994          95 LISFIEE  101 (101)
T ss_pred             HHHHHhC
Confidence            9999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0014  Score=62.64  Aligned_cols=109  Identities=12%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             cceeeEeccCCcccccC---CCCcEEEEEecC----CCccccccHHHHHHHHHHhhc--------cceEEEEEcccchhh
Q 014549          135 VHAFNVVTSEDFPSIFH---DSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEG--------IANTGMVELGDIRLA  199 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~---~~~~~lV~FYap----wC~~C~~~~p~~~~~A~~l~~--------~~~~~~Vdc~~~~~~  199 (423)
                      .+.|+.+|+.+|...+.   .+-..+|+|.|-    .|.-|++...+|.-+|.....        .+=|+.||-++   -
T Consensus        39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---~  115 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---S  115 (331)
T ss_pred             CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---c
Confidence            45689999999999983   245577888874    699999999999999987632        24689999994   4


Q ss_pred             hHHHhhCCCCccccccCccEEEEeCCCCCCCCCccccc---CCCCHHHHHHHHHHh
Q 014549          200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE---GELSVDAVTDWFATA  252 (423)
Q Consensus       200 ~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~---G~~~~~~l~~fi~~~  252 (423)
                      +++-+.++      ++..|++.+|.+....+.....+.   -...+|++.+|+.+.
T Consensus       116 p~~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~  165 (331)
T KOG2603|consen  116 PQVFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR  165 (331)
T ss_pred             HHHHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence            55889999      889999999977654322233333   233499999999887

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.33  E-value=0.00028  Score=54.68  Aligned_cols=60  Identities=12%  Similarity=0.122  Sum_probs=40.3

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh--hhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~--~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      ++.|+++||++|+++.+.++++.  ..+...+..||-+++..  ...+.+..+      +.++|++  |.+|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v--~i~g   62 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNI--FING   62 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence            47899999999999999998876  33334555555442211  123566667      8899997  4455

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.33  E-value=0.00061  Score=64.65  Aligned_cols=124  Identities=12%  Similarity=0.126  Sum_probs=84.0

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceE--EEEEcccccc-HHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASF--AFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f--~~v~~~~~~~-~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++|-|+++.|   ..+.|.+..+|..++....-  +.....+|+. ..|+++|.|+++||+.+|++|....-.|-|.++.
T Consensus        16 vfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsV   95 (375)
T KOG0912|consen   16 VFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSV   95 (375)
T ss_pred             EeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhH
Confidence            4555776643   33567777777766543321  1222356765 7899999999999999999987766678999999


Q ss_pred             hHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEEc-cCChhhHHHH
Q 014549          354 SRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMR  413 (423)
Q Consensus       354 ~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~-~~~~~~~~~~  413 (423)
                      +.|.+||++..-..+.++.+.+.....-.+      .|    +..+.++- +++.+++-++
T Consensus        96 eaL~efi~kq~s~~i~Ef~sl~~l~n~~~p------~K----~~vIgyF~~kdspey~~~~  146 (375)
T KOG0912|consen   96 EALIEFIEKQLSDPINEFESLDQLQNLDIP------SK----RTVIGYFPSKDSPEYDNLR  146 (375)
T ss_pred             HHHHHHHHHHhccHHHHHHhHHHHHhhhcc------cc----ceEEEEeccCCCchHHHHH
Confidence            999999999766667777766665544221      22    35555554 5666655443

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.29  E-value=0.0019  Score=52.40  Aligned_cols=79  Identities=16%  Similarity=0.194  Sum_probs=55.2

Q ss_pred             ceEEEEEecCC---CCCchHHHHHHHhcccc---ceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCC
Q 014549          279 KVKVIFFSKTG---ERASPFVRQISRNYWAY---ASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (423)
Q Consensus       279 ~~~vl~f~~~~---~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~  351 (423)
                      .++|.|+++.+   ....|.+..++..++..   +.++.+   +++ ...++++|+|.++|++++|+++  ....|.|..
T Consensus        17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~v---d~~~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~   91 (104)
T cd03000          17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKL---DATAYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPR   91 (104)
T ss_pred             eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEE---ECccCHhHHhhcCCccccEEEEEcCC--CceeecCCC
Confidence            35555666532   33467777788777432   444444   333 3789999999999999999654  345688999


Q ss_pred             ChhHHHHHHHh
Q 014549          352 NNSRLSEVMEQ  362 (423)
Q Consensus       352 ~~~~l~~fi~~  362 (423)
                      +.+.|.+|+++
T Consensus        92 ~~~~l~~~~~~  102 (104)
T cd03000          92 TKDDIVEFANR  102 (104)
T ss_pred             CHHHHHHHHHh
Confidence            99999999976

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.26  E-value=0.0012  Score=56.29  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=41.4

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      +++++|.|| +.||+.|....|.+.++.+.+.+. +.+..|..+........+++++
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~   79 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG   79 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence            678999999 589999999999999999888753 5677776664444444555555

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.25  E-value=0.00062  Score=56.71  Aligned_cols=55  Identities=9%  Similarity=0.054  Sum_probs=43.0

Q ss_pred             CCCcEEEEEecC-CCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC
Q 014549          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~  206 (423)
                      .+++.+|.||+. ||++|+...+.+.++.++++.. +.+..|..+.........+++
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~   80 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY   80 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence            568999999999 9999999999999999998864 688888876443334444444

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.24  E-value=0.00091  Score=53.89  Aligned_cols=82  Identities=16%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             ceEEEEEe-cCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCC--CCCeEEEecCCCcceeEec-CCC
Q 014549          279 KVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVYY-GSF  351 (423)
Q Consensus       279 ~~~vl~f~-~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~--~~Ptl~lfk~~~~~~~~y~-g~~  351 (423)
                      ++++++|. ..+   +...+.++.+|.+|++.+.|+.+...+  ...+++.|++.  +.|++++++........+. |.+
T Consensus        13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~   90 (103)
T cd02982          13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL   90 (103)
T ss_pred             CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence            35555554 322   233566788999999888888886433  36799999999  8999999987432233333 445


Q ss_pred             ChhHHHHHHHh
Q 014549          352 NNSRLSEVMEQ  362 (423)
Q Consensus       352 ~~~~l~~fi~~  362 (423)
                      +.+.|.+||.+
T Consensus        91 ~~~~l~~fi~~  101 (103)
T cd02982          91 TAESLEEFVED  101 (103)
T ss_pred             CHHHHHHHHHh
Confidence            88999999986

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.19  E-value=0.003  Score=51.83  Aligned_cols=95  Identities=13%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe----
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL----  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf----  337 (423)
                      +++.+.++.|+... +..++|.+|.+..+.....+..+|..+++.+.|+.+.     ...+.+++++. .|.+++|    
T Consensus         5 i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~   77 (107)
T cd03068           5 LQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEK   77 (107)
T ss_pred             cCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHH
Confidence            33433356666432 1346666776543334556677888888888987764     34577888886 5778888    


Q ss_pred             --cCCCcceeEecCC-CChhH-HHHHHHhh
Q 014549          338 --KDPGVKPVVYYGS-FNNSR-LSEVMEQN  363 (423)
Q Consensus       338 --k~~~~~~~~y~g~-~~~~~-l~~fi~~~  363 (423)
                        +..+....+|.|. .+.++ |..||..|
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence              4566677889888 67666 99999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.17  E-value=0.0007  Score=53.83  Aligned_cols=97  Identities=13%  Similarity=0.240  Sum_probs=74.8

Q ss_pred             cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc----Ccc
Q 014549          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR----GLP  218 (423)
Q Consensus       143 ~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~----~~P  218 (423)
                      ..+|..+++...-+||.|..+--..-..+ ..+.++|+.++|.+.++-|||.+. +...||+++.      |.    .-|
T Consensus         9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlK------v~~~~kp~~   80 (112)
T cd03067           9 HKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLK------VDPSSKPKP   80 (112)
T ss_pred             hHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHc------cCCCCCCCc
Confidence            35788889888889998887654333333 489999999999999999999943 3567999998      55    334


Q ss_pred             -EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          219 -SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       219 -ti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                       ++.=|.+|..    ...|+-..+..+|+.|++.
T Consensus        81 ~~LkHYKdG~f----HkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          81 VELKHYKDGDF----HTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             chhhcccCCCc----cccccchhhHHHHHHHhhC
Confidence             3566888876    3588888899999999864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PRK09381 trxA thioredoxin; Provisional

Probab=97.15  E-value=0.0031  Score=51.53  Aligned_cols=81  Identities=15%  Similarity=0.284  Sum_probs=58.3

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+.+.+   ....|.+..++..+.+.+.++.+....  ...++++|++.+.|++++|+++. ....+.|..+.+.|
T Consensus        24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l  100 (109)
T PRK09381         24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSKGQL  100 (109)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCCe-EEEEecCCCCHHHH
Confidence            4555555432   234677788888887777777775432  36789999999999999997543 33456788888999


Q ss_pred             HHHHHhh
Q 014549          357 SEVMEQN  363 (423)
Q Consensus       357 ~~fi~~~  363 (423)
                      ..||..+
T Consensus       101 ~~~i~~~  107 (109)
T PRK09381        101 KEFLDAN  107 (109)
T ss_pred             HHHHHHh
Confidence            9999874

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.12  E-value=0.0034  Score=53.47  Aligned_cols=107  Identities=20%  Similarity=0.266  Sum_probs=76.9

Q ss_pred             eeeEeccCCc-ccccCCCCcEEEEEecC--CCcc-c-cccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCc
Q 014549          137 AFNVVTSEDF-PSIFHDSKPWLIQVYSD--GSYL-C-GQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       137 ~v~~L~~~nf-~~~v~~~~~~lV~FYap--wC~~-C-~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      .|++|+++++ ++.-.++..-+|-|...  -|.. + ..+...++++|+.++|. +.|+-+|.++.   ..+.+.+|+. 
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl~-   78 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNIG-   78 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCCC-
Confidence            3788998876 44455566666666442  1221 2 35788999999999999 89999999943   4488999932 


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                         -.++|+++++...+..   ...+.|..+.++|.+|+.+.+
T Consensus        79 ---~~~~P~v~i~~~~~~K---Y~~~~~~~t~e~i~~Fv~~~l  115 (130)
T cd02983          79 ---GFGYPAMVAINFRKMK---FATLKGSFSEDGINEFLRELS  115 (130)
T ss_pred             ---ccCCCEEEEEecccCc---cccccCccCHHHHHHHHHHHH
Confidence               2469999999875421   222679999999999999883

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.10  E-value=0.0029  Score=54.75  Aligned_cols=87  Identities=16%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++|| |++..|   ....+.+..++..|...+.|+.+.+.......++++|+|.++|++++|..++..-..+.|..+.
T Consensus        20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~   99 (142)
T cd02950          20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK   99 (142)
T ss_pred             CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence            335555 444422   2345677778878776677888765443335789999999999999996544444456788888


Q ss_pred             hHHHHHHHhhc
Q 014549          354 SRLSEVMEQNK  364 (423)
Q Consensus       354 ~~l~~fi~~~~  364 (423)
                      +.|.++|....
T Consensus       100 ~~l~~~l~~l~  110 (142)
T cd02950         100 QVLAQNLDALV  110 (142)
T ss_pred             HHHHHHHHHHH
Confidence            88888888753

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.10  E-value=0.0015  Score=61.83  Aligned_cols=90  Identities=14%  Similarity=0.138  Sum_probs=67.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--------hhhhHHHhhCCCCccccccCccEEEEe
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--------~~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      +++.-||.||...|++|++++|..+.+++...  +.+-.|+.++.        +....+++++|      |..+|++++.
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv  220 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLV  220 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEE
Confidence            35689999999999999999999999999876  55566665533        11244778888      8899999999


Q ss_pred             CCCCCCCCCccc-ccCCCCHHHHHHHHHHh
Q 014549          224 PPGCKSSDCMTR-FEGELSVDAVTDWFATA  252 (423)
Q Consensus       224 ~~g~~~~~~~~~-y~G~~~~~~l~~fi~~~  252 (423)
                      .++...   ... =.|..+.++|.+=+...
T Consensus       221 ~~~t~~---~~pv~~G~iS~deL~~Ri~~v  247 (256)
T TIGR02739       221 NPKSQK---MSPLAYGFISQDELKERILNV  247 (256)
T ss_pred             ECCCCc---EEEEeeccCCHHHHHHHHHHH
Confidence            887542   111 13899999998765544

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR01068 thioredoxin thioredoxin

Probab=97.10  E-value=0.0049  Score=48.92  Aligned_cols=81  Identities=16%  Similarity=0.290  Sum_probs=56.4

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      +++.|+++.+   ....+.+..++..+.+.+.|+.+....  ...++++|++.+.|++++|+++. ....+.|..+.+.|
T Consensus        17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l   93 (101)
T TIGR01068        17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGK-EVDRSVGALPKAAL   93 (101)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCc-EeeeecCCCCHHHH
Confidence            4444554422   223566677777776667777775332  36789999999999999997543 33455788888999


Q ss_pred             HHHHHhh
Q 014549          357 SEVMEQN  363 (423)
Q Consensus       357 ~~fi~~~  363 (423)
                      .+||+++
T Consensus        94 ~~~l~~~  100 (101)
T TIGR01068        94 KQLINKN  100 (101)
T ss_pred             HHHHHhh
Confidence            9999863

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PHA02278 thioredoxin-like protein

Probab=97.10  E-value=0.0031  Score=51.37  Aligned_cols=79  Identities=16%  Similarity=0.144  Sum_probs=53.2

Q ss_pred             eEEEEEecC-C--CCCchHHHHHHHhccccceEEEEEccccc--cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549          280 VKVIFFSKT-G--ERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (423)
Q Consensus       280 ~~vl~f~~~-~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~--~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~  354 (423)
                      ++|.|+++. +  ....|.+..++.++.....|..+++....  .++++++|+|.+.||+++|+++. .-....|..+.+
T Consensus        17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~~~~   95 (103)
T PHA02278         17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQVTPM   95 (103)
T ss_pred             EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCCCHH
Confidence            444455542 2  33467787777765444567777654321  25799999999999999999763 333457877777


Q ss_pred             HHHHH
Q 014549          355 RLSEV  359 (423)
Q Consensus       355 ~l~~f  359 (423)
                      .|.++
T Consensus        96 ~l~~~  100 (103)
T PHA02278         96 QLQEL  100 (103)
T ss_pred             HHHhh
Confidence            77765

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.09  E-value=0.0024  Score=51.75  Aligned_cols=63  Identities=14%  Similarity=0.237  Sum_probs=46.0

Q ss_pred             HHHhccccceEEEEEccccc--cHHHHhhcCCCCCCeEEEecC-CCcceeEecCCCChhHHHHHHH
Q 014549          299 ISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVME  361 (423)
Q Consensus       299 ~a~~~~~~~~f~~v~~~~~~--~~~l~~~f~v~~~Ptl~lfk~-~~~~~~~y~g~~~~~~l~~fi~  361 (423)
                      ++..+.+.+.++.+......  ...++++|++.+.|++++|++ ++..+..+.|.++.+.|.++|+
T Consensus        39 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          39 VQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             HHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence            44455545666666644322  367999999999999999986 4556677789999998888763

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.07  E-value=0.0026  Score=59.22  Aligned_cols=83  Identities=12%  Similarity=0.126  Sum_probs=59.8

Q ss_pred             ceEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEe-cCCCChh
Q 014549          279 KVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY-YGSFNNS  354 (423)
Q Consensus       279 ~~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y-~g~~~~~  354 (423)
                      .++|.|+++.+   ....|.+..++.++.+.+.++.+...  +...++++|+|.++||+++|+++  +.+.| .|..+.+
T Consensus        54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl~~f~~G--~~v~~~~G~~s~e  129 (224)
T PTZ00443         54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTLLLFDKG--KMYQYEGGDRSTE  129 (224)
T ss_pred             CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEEEEEECC--EEEEeeCCCCCHH
Confidence            35666776532   22457777788888777666666422  23789999999999999999865  33444 5778999


Q ss_pred             HHHHHHHhhcc
Q 014549          355 RLSEVMEQNKL  365 (423)
Q Consensus       355 ~l~~fi~~~~~  365 (423)
                      .|.+|+..+..
T Consensus       130 ~L~~fi~~~~~  140 (224)
T PTZ00443        130 KLAAFALGDFK  140 (224)
T ss_pred             HHHHHHHHHHH
Confidence            99999988643

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=97.05  E-value=0.0016  Score=56.62  Aligned_cols=71  Identities=20%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccc----------------------hhhhHHHhhC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDI----------------------RLATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~----------------------~~~~~l~~~~  206 (423)
                      .++++.++|-|-||+.|+.|.|...++-++++..   +.|.-|+-+.+                      +...+|+++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            3588999999999999999999998888887765   44444544322                      1233455555


Q ss_pred             CCCccccccCccEEEEeCCCCC
Q 014549          207 PIGQIFFRRGLPSLVAFPPGCK  228 (423)
Q Consensus       207 ~~~~~~~i~~~Pti~~f~~g~~  228 (423)
                      +      |++.|++++..+...
T Consensus       112 ~------v~~iP~l~i~~~dG~  127 (157)
T KOG2501|consen  112 E------VKGIPALVILKPDGT  127 (157)
T ss_pred             c------cCcCceeEEecCCCC
Confidence            5      999999998877653

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.05  E-value=0.0028  Score=52.44  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             eEeccCCcccccCCCCcEEEEEe----cCCCccccccHHHHHHHHHHhh-ccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          139 NVVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       139 ~~L~~~nf~~~v~~~~~~lV~FY----apwC~~C~~~~p~~~~~A~~l~-~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .++|.+|.....  ..+.++-||    ++.-..-..+.+.+.++|+.++ |.+.|+.+|.+   ......+.+|      
T Consensus         2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~---~~~~~l~~fg------   70 (111)
T cd03073           2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKE---DFSHELEEFG------   70 (111)
T ss_pred             CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHH---HHHHHHHHcC------
Confidence            346666665553  233344443    3333444678899999999999 79999999998   4444778889      


Q ss_pred             cc--C--ccEEEEeCCCCCCCCCcccccCCC-CHHHHHHHHHHh
Q 014549          214 RR--G--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA  252 (423)
Q Consensus       214 i~--~--~Pti~~f~~g~~~~~~~~~y~G~~-~~~~l~~fi~~~  252 (423)
                      ++  .  +|++.++..+..    .....+.. +.++|.+|+.+.
T Consensus        71 l~~~~~~~P~~~i~~~~~~----KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          71 LDFSGGEKPVVAIRTAKGK----KYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CCcccCCCCEEEEEeCCCC----ccCCCcccCCHHHHHHHHHHh
Confidence            55  4  999999874332    01235777 999999999764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.04  E-value=0.0024  Score=57.58  Aligned_cols=93  Identities=13%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHH-hhc--cceEEEEEcccchh-hhHHH--------hhCC---C--------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIRL-ATHLA--------ERKP---I--------  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~-l~~--~~~~~~Vdc~~~~~-~~~l~--------~~~~---~--------  208 (423)
                      .+++++|+|||.||+.|+.-.|..++++.. +.-  .=....||-++... .....        ..++   +        
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v  137 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV  137 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence            389999999999999999999999999543 111  01226666553210 01111        1111   0        


Q ss_pred             CccccccCccEE-EEeCCCCCCCCCcccccCCCCHHHHHH
Q 014549          209 GQIFFRRGLPSL-VAFPPGCKSSDCMTRFEGELSVDAVTD  247 (423)
Q Consensus       209 ~~~~~i~~~Pti-~~f~~g~~~~~~~~~y~G~~~~~~l~~  247 (423)
                      ...+++.+.|+- .++-+.+..   ...+.|..+.+++.+
T Consensus       138 ~~~~gv~~~P~T~fVIDk~GkV---v~~~~G~l~~ee~e~  174 (184)
T TIGR01626       138 KNAWQLNSEDSAIIVLDKTGKV---KFVKEGALSDSDIQT  174 (184)
T ss_pred             HHhcCCCCCCceEEEECCCCcE---EEEEeCCCCHHHHHH
Confidence            034558899766 455443332   345569888887766

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK10996 thioredoxin 2; Provisional

Probab=97.04  E-value=0.0034  Score=54.01  Aligned_cols=68  Identities=13%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++.++.+.+.|+.+...  +.+.++++|+|.+.|++++|+++ .....+.|..+.+.|.+|+++.
T Consensus        71 ~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~~Ptlii~~~G-~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996         71 APIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRSIPTIMIFKNG-QVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             HHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCccCEEEEEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence            45666677777666666666532  24789999999999999999854 3444568888999999999863

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.04  E-value=0.0054  Score=55.37  Aligned_cols=42  Identities=5%  Similarity=-0.116  Sum_probs=35.0

Q ss_pred             CCc-EEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       153 ~~~-~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      +++ +++.++|.||+.|++-.|.++++.+++++. +.|..|+|+
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            444 456669999999999999999999999865 788888874

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=96.98  E-value=0.0017  Score=54.21  Aligned_cols=94  Identities=10%  Similarity=0.086  Sum_probs=65.1

Q ss_pred             CCCCcEEEEEecC----CCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       151 ~~~~~~lV~FYap----wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      ++.+..+|.+|+|    ||..|+..- .=+++.+-+.....+-..|.... ....++..++      +.+||++.++...
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~-eg~~la~~l~------~~~~P~~~~l~~~   86 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKP-EGYRVSQALR------ERTYPFLAMIMLK   86 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCCh-HHHHHHHHhC------CCCCCEEEEEEec
Confidence            6789999999999    788885533 12345556666666667776644 3356899999      9999999988422


Q ss_pred             CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          227 CKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       227 ~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .....-..+..|..++++|+..+...
T Consensus        87 ~~~~~vv~~i~G~~~~~~ll~~L~~~  112 (116)
T cd02991          87 DNRMTIVGRLEGLIQPEDLINRLTFI  112 (116)
T ss_pred             CCceEEEEEEeCCCCHHHHHHHHHHH
Confidence            11101133577999999999988765

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.96  E-value=0.0024  Score=60.14  Aligned_cols=89  Identities=16%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEccc--ch------hhhHHHhhCCCCccccccCccEEEEeC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--IR------LATHLAERKPIGQIFFRRGLPSLVAFP  224 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~--~~------~~~~l~~~~~~~~~~~i~~~Pti~~f~  224 (423)
                      ++.-|+.||.+.|++|++++|..+.+++...=  .+..|..|.  .+      .+...+++++      |..+|++++..
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv~  214 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLVD  214 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEEE
Confidence            56889999999999999999999999998763  444444432  11      1233556677      99999999998


Q ss_pred             CCCCCCCCccc-ccCCCCHHHHHHHHHHh
Q 014549          225 PGCKSSDCMTR-FEGELSVDAVTDWFATA  252 (423)
Q Consensus       225 ~g~~~~~~~~~-y~G~~~~~~l~~fi~~~  252 (423)
                      ++...   ... =.|..+.++|.+=+...
T Consensus       215 ~~t~~---~~pv~~G~iS~deL~~Ri~~v  240 (248)
T PRK13703        215 PKSGS---VRPLSYGFITQDDLAKRFLNV  240 (248)
T ss_pred             CCCCc---EEEEeeccCCHHHHHHHHHHH
Confidence            87542   111 23889999887755433

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=96.96  E-value=0.00037  Score=58.15  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             CCCCcEEEEEecC-------CCccccccHHHHHHHHHHhhccceEEEEEcc-----cchhhhHHHh--hCCCCccccccC
Q 014549          151 HDSKPWLIQVYSD-------GSYLCGQFSGAWKTIAALLEGIANTGMVELG-----DIRLATHLAE--RKPIGQIFFRRG  216 (423)
Q Consensus       151 ~~~~~~lV~FYap-------wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-----~~~~~~~l~~--~~~~~~~~~i~~  216 (423)
                      +++++.+|.|++.       ||+.|.+..|..+++-....+...+..|...     +++.+ ..-.  +++      +++
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n-~fR~~p~~~------l~~   89 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNN-PFRTDPDLK------LKG   89 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTS-HHHH--CC---------S
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCC-CceEcceee------eee
Confidence            4568899999964       9999999999999988776555666666654     22211 1222  244      999


Q ss_pred             ccEEEEeCCC
Q 014549          217 LPSLVAFPPG  226 (423)
Q Consensus       217 ~Pti~~f~~g  226 (423)
                      +|||+-+..+
T Consensus        90 IPTLi~~~~~   99 (119)
T PF06110_consen   90 IPTLIRWETG   99 (119)
T ss_dssp             SSEEEECTSS
T ss_pred             cceEEEECCC
Confidence            9999999776

; PDB: 1V9W_A 1WOU_A.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=96.95  E-value=0.0038  Score=53.17  Aligned_cols=103  Identities=12%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             ecccchhhhhhhhhcCCCceEEEEEecCC-C-------CCchHHHHHHHhcccc-ceEEEEEccccccHHHHhhcCCCC-
Q 014549          261 YYTKESMGKNFLAKTGPHKVKVIFFSKTG-E-------RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES-  330 (423)
Q Consensus       261 ~it~~~~~~~fl~~~~~~~~~vl~f~~~~-~-------~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~~f~v~~-  330 (423)
                      .+++++.++..   ...+.++|+.|-++. +       .....++.+|.+|++. +.|+++...+  ...+.+.||+++ 
T Consensus         6 ~l~~~~~~~~~---C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~   80 (130)
T cd02983           6 ELTSEDVFEET---CEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGF   80 (130)
T ss_pred             EecCHHHHHhh---ccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCcc
Confidence            35654433322   223458888775421 1       1234456689999998 8888886443  245999999964 


Q ss_pred             -CCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccC
Q 014549          331 -APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQEL  368 (423)
Q Consensus       331 -~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~l  368 (423)
                       +|+++++.....+...+.|+++.++|.+|++...-..+
T Consensus        81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence             89999997754333336799999999999999755544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=96.93  E-value=0.0062  Score=54.36  Aligned_cols=43  Identities=16%  Similarity=0.105  Sum_probs=36.5

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD  195 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~  195 (423)
                      +++++|.|| +.||+.|..-.|.+.++++++... +.+..|.++.
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~   73 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS   73 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            578999999 799999999999999999999754 6777777763

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=96.93  E-value=0.0064  Score=50.43  Aligned_cols=95  Identities=16%  Similarity=0.182  Sum_probs=61.5

Q ss_pred             hhhhhhhcCCCceEEEEEecC---CCCCchHHHHHH-H--hccccceEEEEEcccc---ccHHHHhhcCCCC--CCeEEE
Q 014549          268 GKNFLAKTGPHKVKVIFFSKT---GERASPFVRQIS-R--NYWAYASFAFVLWREE---ESSIWWNTFEVES--APAIVF  336 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~~~---~~~~~~~~~~~a-~--~~~~~~~f~~v~~~~~---~~~~l~~~f~v~~--~Ptl~l  336 (423)
                      ++..+....   ..++=|+-.   ++ ..-.+..+| .  +-...+-++.|.+.+-   ++.+|+++|++..  +|.+++
T Consensus        14 FdKvi~kf~---~~LVKFD~ayPyGe-Khd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~L   89 (126)
T PF07912_consen   14 FDKVIPKFK---YVLVKFDVAYPYGE-KHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYL   89 (126)
T ss_dssp             HHHHGGGSS---EEEEEEEESS--CH-HHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEE
T ss_pred             hhheeccCc---eEEEEEeccCCCcc-hHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEE
Confidence            445554332   455555521   11 234455555 2  2345677788877654   4588999999964  899999


Q ss_pred             ecCCCcceeEe--cCCCChhHHHHHHHhhccc
Q 014549          337 LKDPGVKPVVY--YGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       337 fk~~~~~~~~y--~g~~~~~~l~~fi~~~~~~  366 (423)
                      |+.+.+.|+.|  +|+.+.++|..|+.+|.-.
T Consensus        90 F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~  121 (126)
T PF07912_consen   90 FVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL  121 (126)
T ss_dssp             EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred             ecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence            99888899999  8999999999999998543

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=96.92  E-value=0.0025  Score=56.71  Aligned_cols=54  Identities=9%  Similarity=0.054  Sum_probs=43.5

Q ss_pred             CCcEEEEEecCC-CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FYapw-C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      +++++|.||+.| |+.|.+-.|.+.++++++. .+.|..|+++........+++++
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~   98 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG   98 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence            568999999999 9999999999999999984 56788888875444455666666

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.91  E-value=0.0029  Score=67.21  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             CCcEEE-EEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCC
Q 014549          153 SKPWLI-QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (423)
Q Consensus       153 ~~~~lV-~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~  231 (423)
                      +++.-| -|++|+|++|.+....++++|.+.. .+..-.||.+   ..++++++|+      |.++|++++  +|+.   
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~---~~~~~~~~~~------v~~vP~~~i--~~~~---  539 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVS---HFPDLKDEYG------IMSVPAIVV--DDQQ---  539 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECc---ccHHHHHhCC------ceecCEEEE--CCEE---
Confidence            455544 5589999999999999999988754 4677788888   5667999999      999999876  5543   


Q ss_pred             CcccccCCCCHHHHHHHH
Q 014549          232 CMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       232 ~~~~y~G~~~~~~l~~fi  249 (423)
                         .+.|..+.++|++|+
T Consensus       540 ---~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       540 ---VYFGKKTIEEMLELI  554 (555)
T ss_pred             ---EEeeCCCHHHHHHhh
Confidence               678988999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0012  Score=54.24  Aligned_cols=80  Identities=10%  Similarity=0.024  Sum_probs=56.3

Q ss_pred             Cccccc---CCCCcEEEEEecC--------CCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          145 DFPSIF---HDSKPWLIQVYSD--------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       145 nf~~~v---~~~~~~lV~FYap--------wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|.+.+   .+++..+|.|+++        ||+.|.+..|.+.++-+.....+.|..|+..+.+.=.+.+..|...-.+ 
T Consensus        14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~-   92 (128)
T KOG3425|consen   14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI-   92 (128)
T ss_pred             HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc-
Confidence            344444   4556699999974        9999999999999999977777899999987443333333333221112 


Q ss_pred             ccCccEEEEeCC
Q 014549          214 RRGLPSLVAFPP  225 (423)
Q Consensus       214 i~~~Pti~~f~~  225 (423)
                      +.++||++=+.+
T Consensus        93 lt~vPTLlrw~~  104 (128)
T KOG3425|consen   93 LTAVPTLLRWKR  104 (128)
T ss_pred             eeecceeeEEcC
Confidence            389999998875

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.88  E-value=0.0088  Score=48.53  Aligned_cols=82  Identities=22%  Similarity=0.198  Sum_probs=53.7

Q ss_pred             CceEEE-EEecC-CCC--CchHHHHHHHhccccceEEEEEcccccc-HHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549          278 HKVKVI-FFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (423)
Q Consensus       278 ~~~~vl-~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~-~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~  352 (423)
                      ++++|+ |+++. ..|  ..|.+..++.+| ..+.|+.++..+... ..++++|+|.+.||+++|+++. ....+.|. .
T Consensus        15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~-~v~~~~G~-~   91 (103)
T cd02985          15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE-KIHEEEGI-G   91 (103)
T ss_pred             CCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe-EEEEEeCC-C
Confidence            445555 55542 223  467778788888 567788776544322 4799999999999999998653 44556774 4


Q ss_pred             hhHHHHHHHh
Q 014549          353 NSRLSEVMEQ  362 (423)
Q Consensus       353 ~~~l~~fi~~  362 (423)
                      .+.|.+-+..
T Consensus        92 ~~~l~~~~~~  101 (103)
T cd02985          92 PDELIGDVLY  101 (103)
T ss_pred             HHHHHHHHHh
Confidence            5666655543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.84  E-value=0.0064  Score=49.19  Aligned_cols=92  Identities=13%  Similarity=0.208  Sum_probs=56.5

Q ss_pred             ccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          263 TKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       263 t~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.+.+++.++.   ++++++ |+++.+   ....|.+..++..+.+ .+.|+.+...   ..+++++|+|...||+++|
T Consensus         5 ~~~~~~~~~i~~---~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~~~~~v~~~Pt~~~~   78 (102)
T cd02948           5 NNQEEWEELLSN---KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTLKRYRGKCEPTFLFY   78 (102)
T ss_pred             cCHHHHHHHHcc---CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHHHHcCCCcCcEEEEE
Confidence            333335555542   335444 555432   2235667767777753 3456666433   4678999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +++... ....| .+...|.++|.+
T Consensus        79 ~~g~~~-~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          79 KNGELV-AVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             ECCEEE-EEEec-CChHHHHHHHhh
Confidence            865433 22345 477888888865

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.84  E-value=0.0042  Score=65.39  Aligned_cols=82  Identities=15%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      ...-+-.|++|+|++|......++++|.. .+.+..-.||..   .+++++++|+      |.++|++++  +|..    
T Consensus       116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~---~~~~~~~~~~------v~~VP~~~i--~~~~----  179 (517)
T PRK15317        116 GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGA---LFQDEVEARN------IMAVPTVFL--NGEE----  179 (517)
T ss_pred             CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEch---hCHhHHHhcC------CcccCEEEE--CCcE----
Confidence            34568889999999999999999888875 446788888988   6677999999      999999865  5543    


Q ss_pred             cccccCCCCHHHHHHHHHHh
Q 014549          233 MTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi~~~  252 (423)
                        .+.|..+.++|++.+.+.
T Consensus       180 --~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        180 --FGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             --EEecCCCHHHHHHHHhcc
Confidence              688999999999988754

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.80  E-value=0.0071  Score=52.68  Aligned_cols=56  Identities=11%  Similarity=0.046  Sum_probs=41.8

Q ss_pred             CCCcEEEEEecC-CCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++|.||+. ||+.|....+.+.++.+.+++. +.+..|+.+........+++++
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~   86 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL   86 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence            457899999976 6888999999999999998764 6777777764444444555555

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0098  Score=54.43  Aligned_cols=77  Identities=16%  Similarity=0.168  Sum_probs=64.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      ...+..++.||++||..|+++...++.+|+.. ..+.+.+++.+   ...++|..+.      +...|.+..+..|..  
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~---~~~eis~~~~------v~~vp~~~~~~~~~~--   82 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAE---EFPEISNLIA------VEAVPYFVFFFLGEK--   82 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhh---hhhHHHHHHH------HhcCceeeeeecchh--
Confidence            47788899999999999999999999999998 66899999999   6667999988      899999999987765  


Q ss_pred             CCcccccCCCC
Q 014549          231 DCMTRFEGELS  241 (423)
Q Consensus       231 ~~~~~y~G~~~  241 (423)
                        ..+..|...
T Consensus        83 --v~~l~~~~~   91 (227)
T KOG0911|consen   83 --VDRLSGADP   91 (227)
T ss_pred             --hhhhhccCc
Confidence              344555443

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=96.75  E-value=0.0096  Score=49.31  Aligned_cols=78  Identities=10%  Similarity=0.181  Sum_probs=50.5

Q ss_pred             eEEEEEecC-CCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEe------c-C
Q 014549          280 VKVIFFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY------Y-G  349 (423)
Q Consensus       280 ~~vl~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y------~-g  349 (423)
                      ++|.|+.+. ..|  ..|.+..++.+|. .+.|..+....  ...++++|+|.+.||+++|+++.......      . +
T Consensus        25 vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~  101 (113)
T cd02989          25 VVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKD  101 (113)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEECCEEEEEEECccccCCCC
Confidence            455555543 223  3677777888775 46777775333  36799999999999999999875332111      1 3


Q ss_pred             CCChhHHHHHH
Q 014549          350 SFNNSRLSEVM  360 (423)
Q Consensus       350 ~~~~~~l~~fi  360 (423)
                      +++.+++..|+
T Consensus       102 ~~~~~~~e~~~  112 (113)
T cd02989         102 DFSTETLEKRL  112 (113)
T ss_pred             CCCHHHHHHHh
Confidence            45667777765

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0093  Score=48.85  Aligned_cols=80  Identities=21%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             CceEEEEE-ec-C--CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVIFF-SK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl~f-~~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++|+.| +. +  ++...|.+..+|.+|.+ +.|..|.+.+  ..++++.++|...||+++||++..... +-|. +.
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~~-~vGa-~~   95 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVDE-VVGA-NK   95 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEEE-EecC-CH
Confidence            46666644 43 2  34467999999999987 8999998766  678999999999999999997665432 3343 33


Q ss_pred             hHHHHHHHh
Q 014549          354 SRLSEVMEQ  362 (423)
Q Consensus       354 ~~l~~fi~~  362 (423)
                      ..|.+.|..
T Consensus        96 ~~l~~~i~~  104 (106)
T KOG0907|consen   96 AELEKKIAK  104 (106)
T ss_pred             HHHHHHHHh
Confidence            466666654

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=96.74  E-value=0.0096  Score=49.15  Aligned_cols=76  Identities=11%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecC-C--CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKT-G--ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~-~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++++ +.+.+...+.+.++|+ |+++. .  ....|.+..+|.+|. .+.|+.+.....   .++++|+|.+.||+++|
T Consensus         9 i~~~~-f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f   83 (113)
T cd02957           9 ISSKE-FLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA---FLVNYLDIKVLPTLLVY   83 (113)
T ss_pred             EcHHH-HHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh---HHHHhcCCCcCCEEEEE
Confidence            45533 3444433221235544 55543 2  224677788888875 467777764432   79999999999999999


Q ss_pred             cCCCc
Q 014549          338 KDPGV  342 (423)
Q Consensus       338 k~~~~  342 (423)
                      +++..
T Consensus        84 ~~G~~   88 (113)
T cd02957          84 KNGEL   88 (113)
T ss_pred             ECCEE
Confidence            98643

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=96.72  E-value=0.01  Score=53.65  Aligned_cols=41  Identities=12%  Similarity=-0.103  Sum_probs=35.8

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      ++++||.|+|.||+.|++ .|.++++.+++++. +.|..+.|.
T Consensus        25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            589999999999999976 77999999998765 688899995

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=96.66  E-value=0.0092  Score=47.70  Aligned_cols=81  Identities=15%  Similarity=0.202  Sum_probs=53.9

Q ss_pred             CceEEEEEe-cCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVIFFS-KTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl~f~-~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      +++++++|. +.+ .|  ..+.+..++.++.+.+.+..++..  +.+++++++++.+.|++++|+++ .....+.|..+.
T Consensus        13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~g-~~v~~~~g~~~~   89 (97)
T cd02949          13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKDK-ELVKEISGVKMK   89 (97)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEECC-eEEEEEeCCccH
Confidence            345555544 322 22  345566677777655666666532  24689999999999999999854 444456788888


Q ss_pred             hHHHHHHH
Q 014549          354 SRLSEVME  361 (423)
Q Consensus       354 ~~l~~fi~  361 (423)
                      +.|.+|++
T Consensus        90 ~~~~~~l~   97 (97)
T cd02949          90 SEYREFIE   97 (97)
T ss_pred             HHHHHhhC
Confidence            88888874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=96.65  E-value=0.016  Score=47.94  Aligned_cols=80  Identities=20%  Similarity=0.295  Sum_probs=55.6

Q ss_pred             eEEEEEe-c-CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc-ceeEecCCCChh
Q 014549          280 VKVIFFS-K-TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNS  354 (423)
Q Consensus       280 ~~vl~f~-~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~-~~~~y~g~~~~~  354 (423)
                      .++++|. + +..|  ..+.+..++..+ +.+.|..+...  +.++++++|+|.+.||+++|++++. ..+.|.|..+..
T Consensus        24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~  100 (113)
T cd02975          24 DLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY  100 (113)
T ss_pred             EEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence            4555553 3 2233  356677777665 55677777643  2478999999999999999987543 334678877788


Q ss_pred             HHHHHHHh
Q 014549          355 RLSEVMEQ  362 (423)
Q Consensus       355 ~l~~fi~~  362 (423)
                      .+.+||..
T Consensus       101 el~~~i~~  108 (113)
T cd02975         101 EFASLIED  108 (113)
T ss_pred             HHHHHHHH
Confidence            88888876

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=96.64  E-value=0.0041  Score=53.47  Aligned_cols=55  Identities=11%  Similarity=0.076  Sum_probs=39.3

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      +..+++.|++.||+.|+...|.+.++.+++... +.+..|+.+........+++.+
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~   79 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF   79 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence            344445555999999999999999999998654 7888888774433333455544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=96.64  E-value=0.0058  Score=50.65  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             CceEEE-EEecC-CCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc
Q 014549          278 HKVKVI-FFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV  342 (423)
Q Consensus       278 ~~~~vl-~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~  342 (423)
                      ++++|+ |+++. ++|  ..|.+..+|.+|.+.+.|..|.+.+  .++++++|+|.+.||+++|+++..
T Consensus        14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~~   80 (114)
T cd02954          14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNKH   80 (114)
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCEE
Confidence            345555 54442 233  4688888999988777888887543  378999999999999999997654

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.64  E-value=0.0056  Score=52.56  Aligned_cols=54  Identities=13%  Similarity=0.065  Sum_probs=41.6

Q ss_pred             CCcEEEEEecCC-CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FYapw-C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ++++++.||+.| |++|+.-.|.+.++.+++. .+.|..|+.+......+..++++
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~   80 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEG   80 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcC
Confidence            578999999998 6999999999999999986 46788888774333344455555

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.63  E-value=0.0041  Score=48.60  Aligned_cols=80  Identities=8%  Similarity=0.052  Sum_probs=53.5

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcc
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT  234 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~  234 (423)
                      -++.|+.|||++|++....+++++.++ ..+.+..+|.+++. ...++.+..+.+    +..+|+|.  .+|..      
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~if--i~g~~------   68 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKP----VETVPQIF--VDQKH------   68 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEE--ECCEE------
Confidence            367899999999999999999988765 34577788877432 122344444422    57899975  45533      


Q ss_pred             cccCCCCHHHHHHHHHHh
Q 014549          235 RFEGELSVDAVTDWFATA  252 (423)
Q Consensus       235 ~y~G~~~~~~l~~fi~~~  252 (423)
                        -|  ..++|.+++...
T Consensus        69 --ig--g~~~~~~~~~~~   82 (85)
T PRK11200         69 --IG--GCTDFEAYVKEN   82 (85)
T ss_pred             --Ec--CHHHHHHHHHHh
Confidence              23  246788777655

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.61  E-value=0.0057  Score=45.40  Aligned_cols=54  Identities=11%  Similarity=0.029  Sum_probs=36.9

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++.|+++||++|.++.+.+++.      .+.+..+|.+.+.. ...+.+..+      +.++|+|.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence            5788999999999988777652      25667778774332 223333335      779999976

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=96.61  E-value=0.011  Score=52.92  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=60.5

Q ss_pred             ccc-chhhhhhhhhcCCCceEEE-EEecC-CCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTK-ESMGKNFLAKTGPHKVKVI-FFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~-~~~~~~fl~~~~~~~~~vl-~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++ .++ .+.+...+...++|+ |+.+. ..|  ..+.+..+|.+|. .+.|..|....+   .++.+|+|...||+++
T Consensus        67 i~~~~~f-~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~---~l~~~f~v~~vPTlll  141 (175)
T cd02987          67 LDSGEQF-LDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT---GASDEFDTDALPALLV  141 (175)
T ss_pred             cCCHHHH-HHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch---hhHHhCCCCCCCEEEE
Confidence            555 443 333332222335555 44442 223  3577788888874 578888875543   6899999999999999


Q ss_pred             ecCCCcceeE--e----cCCCChhHHHHHHHhh
Q 014549          337 LKDPGVKPVV--Y----YGSFNNSRLSEVMEQN  363 (423)
Q Consensus       337 fk~~~~~~~~--y----~g~~~~~~l~~fi~~~  363 (423)
                      |+++......  +    .+.++.++|..|+.++
T Consensus       142 yk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         142 YKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             EECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            9986533211  1    1256778888888763

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR03137 AhpC peroxiredoxin

Probab=96.56  E-value=0.016  Score=52.55  Aligned_cols=42  Identities=17%  Similarity=0.116  Sum_probs=35.6

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      +++++|.|| +.||+.|..-.|.+.++.+++++. +.+..|.++
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D   74 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD   74 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            568999999 999999999999999999998754 567777765

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=96.47  E-value=0.0024  Score=56.88  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       143 ~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ..+|-+.+....-+++.||-|.-..|+-|-...+.+|+..-+ -+|.+||+.   ..+=|+.+++      |+-.|++.+
T Consensus        74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae---~~PFlv~kL~------IkVLP~v~l  143 (211)
T KOG1672|consen   74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAE---KAPFLVTKLN------IKVLPTVAL  143 (211)
T ss_pred             HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecc---cCceeeeeee------eeEeeeEEE
Confidence            456767776777789999999999999999999999986432 489999998   4455899999      999999999


Q ss_pred             eCCCCC
Q 014549          223 FPPGCK  228 (423)
Q Consensus       223 f~~g~~  228 (423)
                      |.+|..
T Consensus       144 ~k~g~~  149 (211)
T KOG1672|consen  144 FKNGKT  149 (211)
T ss_pred             EEcCEE
Confidence            999976

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.36  E-value=0.008  Score=49.10  Aligned_cols=82  Identities=16%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCC--CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapw--C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      ...++.++++..+......++.|..+.  ++.|...+=+.-|+.+.+.+....+.|.-.   .+..|..+||      +.
T Consensus        11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------v~   81 (107)
T PF07449_consen   11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------VR   81 (107)
T ss_dssp             EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT-------T
T ss_pred             CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------Cc
Confidence            466888899999977777766666542  566666666778888888888888888855   5567999999      99


Q ss_pred             CccEEEEeCCCCC
Q 014549          216 GLPSLVAFPPGCK  228 (423)
Q Consensus       216 ~~Pti~~f~~g~~  228 (423)
                      .+|++++|++|..
T Consensus        82 ~~PaLvf~R~g~~   94 (107)
T PF07449_consen   82 RWPALVFFRDGRY   94 (107)
T ss_dssp             SSSEEEEEETTEE
T ss_pred             cCCeEEEEECCEE
Confidence            9999999999854

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=96.34  E-value=0.0096  Score=51.34  Aligned_cols=55  Identities=16%  Similarity=0.097  Sum_probs=41.0

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .++++|.|| +.||+.|..-.|.+.++.+++.. .+.+..|+.+.........++++
T Consensus        28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~   84 (149)
T cd03018          28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG   84 (149)
T ss_pred             CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence            367777777 89999999999999999999875 36788888764333344455554

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.31  E-value=0.0076  Score=55.00  Aligned_cols=85  Identities=12%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHH--------------------------------hhcc---ceE--EEEEc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL--------------------------------LEGI---ANT--GMVEL  193 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~--------------------------------l~~~---~~~--~~Vdc  193 (423)
                      .+.+..++.|..|.|++|+++.+...+....                                +...   ...  ..-.|
T Consensus        75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~  154 (197)
T cd03020          75 GNGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC  154 (197)
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence            3468899999999999999999887741000                                0000   000  01123


Q ss_pred             c-cchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          194 G-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       194 ~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      . .-..+..+++++|      |++.|+|+ |.+|.       .+.|..+.+.|.+|+
T Consensus       155 ~~~i~~~~~l~~~~g------i~gtPtii-~~~G~-------~~~G~~~~~~l~~~L  197 (197)
T cd03020         155 DNPVAANLALGRQLG------VNGTPTIV-LADGR-------VVPGAPPAAQLEALL  197 (197)
T ss_pred             CchHHHHHHHHHHcC------CCcccEEE-ECCCe-------EecCCCCHHHHHhhC
Confidence            2 1113456788888      99999997 77664       356888888887663

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=96.31  E-value=0.0095  Score=50.86  Aligned_cols=43  Identities=12%  Similarity=0.043  Sum_probs=37.4

Q ss_pred             CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhhcc----ceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~~~----~~~~~Vdc~  194 (423)
                      .+++++|.||++||+. |.+..+.+.++.++++..    +.+..|+++
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            4678999999999997 999999999999998753    788888876

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.28  E-value=0.015  Score=54.57  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHH-h---------hc------------------------c---ceEEEEEc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EG------------------------I---ANTGMVEL  193 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~-l---------~~------------------------~---~~~~~Vdc  193 (423)
                      .+.+..++.|..|.|++|+++.++++++.+. .         .|                        .   ..+..-.|
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c  184 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC  184 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence            4467789999999999999999888775320 0         00                        0   00111134


Q ss_pred             cc-chhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          194 GD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       194 ~~-~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .. -..+..+++++|      |++.||++ |.+|.       ...|..+.+.|.+++.+.
T Consensus       185 ~~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        185 DVDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cchHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence            21 123455788888      99999998 66764       457999999999998754

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=96.26  E-value=0.03  Score=48.26  Aligned_cols=83  Identities=12%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             CceEEE-EEecC-C--CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEE-EecCCCcceeEecC---
Q 014549          278 HKVKVI-FFSKT-G--ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLKDPGVKPVVYYG---  349 (423)
Q Consensus       278 ~~~~vl-~f~~~-~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~-lfk~~~~~~~~y~g---  349 (423)
                      ++++|+ |+.+. +  ....|.+..+|.++.+.+.|..|.+.+  .+++++.|+|.+.|+++ +||++...--...|   
T Consensus        23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~  100 (142)
T PLN00410         23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNN  100 (142)
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEEEECCeEEEEEeccccc
Confidence            445555 55542 2  234688888999887777777776443  37899999999766555 88876433222345   


Q ss_pred             -----CCChhHHHHHHHh
Q 014549          350 -----SFNNSRLSEVMEQ  362 (423)
Q Consensus       350 -----~~~~~~l~~fi~~  362 (423)
                           ..+.++|.+-++.
T Consensus       101 k~~~~~~~k~~l~~~i~~  118 (142)
T PLN00410        101 KINWALKDKQEFIDIVET  118 (142)
T ss_pred             ccccccCCHHHHHHHHHH
Confidence                 2455667666665

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.027  Score=48.66  Aligned_cols=91  Identities=20%  Similarity=0.269  Sum_probs=62.4

Q ss_pred             cccCCCCcEEEEEecCCCccccccHHHHH---HHHHHhhccceEEEEEccc-------------chhhhHHHhhCCCCcc
Q 014549          148 SIFHDSKPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGD-------------IRLATHLAERKPIGQI  211 (423)
Q Consensus       148 ~~v~~~~~~lV~FYapwC~~C~~~~p~~~---~~A~~l~~~~~~~~Vdc~~-------------~~~~~~l~~~~~~~~~  211 (423)
                      ++...++..+++|=++.|..|.+|.....   ++-+.+.+.+.+..+|...             --...+|++.++    
T Consensus        37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~----  112 (182)
T COG2143          37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA----  112 (182)
T ss_pred             hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc----
Confidence            34467889999999999999999886443   3334455544444444321             112457999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHH
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD  247 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~  247 (423)
                        |++.||+++|...+..   .-...|-...++++.
T Consensus       113 --vrstPtfvFfdk~Gk~---Il~lPGY~ppe~Fl~  143 (182)
T COG2143         113 --VRSTPTFVFFDKTGKT---ILELPGYMPPEQFLA  143 (182)
T ss_pred             --cccCceEEEEcCCCCE---EEecCCCCCHHHHHH
Confidence              9999999999876543   233458888777654

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=96.11  E-value=0.046  Score=49.56  Aligned_cols=93  Identities=12%  Similarity=0.055  Sum_probs=61.6

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh----------------------hhHHHhhCCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKPI  208 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~----------------------~~~l~~~~~~  208 (423)
                      ++++++.|| +.||+.|..-.+.+.+..++++.. +.+..|+++....                      ...+++.|| 
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg-  109 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD-  109 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC-
Confidence            457889999 999999999999999999998654 5666666653222                      124555555 


Q ss_pred             Cccccc----cCc--cEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          209 GQIFFR----RGL--PSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       209 ~~~~~i----~~~--Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                           +    .+.  |+..++-++... -....+  ...++.+++.+.+...
T Consensus       110 -----v~~~~~g~~~r~tfIID~~G~I-~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        110 -----NMREDEGLADRATFVVDPQGII-QAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             -----CCcccCCceeeEEEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHhh
Confidence                 4    355  888888644431 001112  2356889998888543

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=96.10  E-value=0.019  Score=48.85  Aligned_cols=55  Identities=18%  Similarity=0.107  Sum_probs=41.5

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~  206 (423)
                      .+++++|.|| +.||+.|....|.+.++.+.++. .+.|..|..+........+++.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~   77 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE   77 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence            4788899999 78999999999999999999854 4688888876333333344444

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=96.02  E-value=0.055  Score=42.78  Aligned_cols=77  Identities=14%  Similarity=0.247  Sum_probs=46.4

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+.+.+   ....+.+..++..+...+.+..+..  .+..+++++|++.+.||+++|+++ ..-..+.| .+.+.|
T Consensus        17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g-~~~~~l   92 (97)
T cd02984          17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA--EELPEISEKFEITAVPTFVFFRNG-TIVDRVSG-ADPKEL   92 (97)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc--ccCHHHHHhcCCccccEEEEEECC-EEEEEEeC-CCHHHH
Confidence            3444555432   2234556667766544555655532  224779999999999999999854 22223345 355666


Q ss_pred             HHHH
Q 014549          357 SEVM  360 (423)
Q Consensus       357 ~~fi  360 (423)
                      .+.|
T Consensus        93 ~~~~   96 (97)
T cd02984          93 AKKV   96 (97)
T ss_pred             HHhh
Confidence            6655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.00  E-value=0.011  Score=42.74  Aligned_cols=54  Identities=13%  Similarity=0.105  Sum_probs=38.5

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++.|..+||++|++....+++.      .+.+-.+|.++++. ...+.+..+      ..++|++.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSG------VRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence            4678999999999888766322      26788899886533 333444446      889999875

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.99  E-value=0.01  Score=45.59  Aligned_cols=58  Identities=14%  Similarity=0.157  Sum_probs=38.1

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-h-hhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-L-ATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      ++.|+++||++|+.+.+.++++..    ...+..++...+. . ...+.+..|      +.++|++  |.+|
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g   61 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGG   61 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence            578999999999999998887654    2344555544321 1 123445556      7799996  4555

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.98  E-value=0.028  Score=59.18  Aligned_cols=82  Identities=15%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      ...-+-.|++|.|++|......+.++|..- +.+..-.+|+.   .+++++++|+      |.++|++.+  ++..    
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~---~~~~~~~~~~------v~~VP~~~i--~~~~----  180 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGA---LFQDEVEALG------IQGVPAVFL--NGEE----  180 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEch---hCHHHHHhcC------CcccCEEEE--CCcE----
Confidence            445688899999999998888888887763 35677778888   6677999999      999999875  5533    


Q ss_pred             cccccCCCCHHHHHHHHHHh
Q 014549          233 MTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi~~~  252 (423)
                        .+.|..+.+++++.+.+.
T Consensus       181 --~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       181 --FHNGRMDLAELLEKLEET  198 (515)
T ss_pred             --EEecCCCHHHHHHHHhhc
Confidence              688989988888777543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.0084  Score=51.49  Aligned_cols=65  Identities=23%  Similarity=0.408  Sum_probs=52.5

Q ss_pred             CCccccccccccc--CCCCHHHHHHHHHHHHHhcCCCCCC--------ChHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           34 SFPPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        34 ~~~~d~y~~lg~~--~~a~~~~ik~ayr~l~~~~hPd~~~--------~~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      +...+||.++|..  ...+..-++.-|.-.+++.|||+..        -+.+.-.+|++||.+|.||-.|..|=.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3356899999864  4556666777899999999999742        256679999999999999999999974

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.95  E-value=0.013  Score=43.11  Aligned_cols=53  Identities=8%  Similarity=0.112  Sum_probs=37.5

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      ++.|+++||++|+...+.+++..      +.+-.+|...+.. ...+.+..+      ...+|++.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~~   55 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQIF   55 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence            46788999999999988877554      5677888875442 334445555      56888774

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=95.94  E-value=0.047  Score=41.87  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=45.7

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHH
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~  361 (423)
                      .+.+..++.. ...+.++.+....  ...+++.|++.+.|++++|+++. ....+.|..+.+.|.+||+
T Consensus        29 ~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l~~~i~   93 (93)
T cd02947          29 APVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKEELEEFLE   93 (93)
T ss_pred             hHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHHHHHHHhC
Confidence            4555555555 4566777665332  36799999999999999998654 4455677777788888873

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=95.94  E-value=0.035  Score=46.47  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=35.2

Q ss_pred             HHHHhhcCCCCCCeEEEecCC-CcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~-~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..++.+|+|.+.|++++|.++ +.....+.|..+.+.+..+|+.
T Consensus        74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~  117 (125)
T cd02951          74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY  117 (125)
T ss_pred             HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence            678999999999999999876 4544566888888888888776

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=95.88  E-value=0.042  Score=45.41  Aligned_cols=69  Identities=19%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             CCceEEEEEe-c-CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEe
Q 014549          277 PHKVKVIFFS-K-TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY  347 (423)
Q Consensus       277 ~~~~~vl~f~-~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y  347 (423)
                      ..+++|+-|. + +++|  ..|.+..+|.+|.+.+.|..|.+.+  .+++++.|+|..-||.++|+++..-.+.|
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~   85 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDY   85 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence            3567777665 3 2222  3577888999987667777776543  47899999999899999999877666665

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=95.86  E-value=0.015  Score=49.38  Aligned_cols=67  Identities=9%  Similarity=0.033  Sum_probs=39.9

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      ...-++-|..+|||.|.+.-|.+.++|+... .+.+--+.-+++   .++-.++-   +.+....|+++++..+
T Consensus        41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~---~el~~~~l---t~g~~~IP~~I~~d~~  107 (129)
T PF14595_consen   41 KPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDEN---KELMDQYL---TNGGRSIPTFIFLDKD  107 (129)
T ss_dssp             S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHH---HHHTTTTT---T-SS--SSEEEEE-TT
T ss_pred             CCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCC---hhHHHHHH---hCCCeecCEEEEEcCC
Confidence            4456667899999999999999999999753 455555554533   33444441   0227899999999654

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=95.74  E-value=0.023  Score=44.35  Aligned_cols=37  Identities=8%  Similarity=0.117  Sum_probs=29.3

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc  193 (423)
                      ++.|+++.|++|..+.+..+++.....+.+.+-.+..
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~   37 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF   37 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence            4689999999999999999999866666665555543

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=95.71  E-value=0.055  Score=47.34  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCC------C
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------A  331 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~------~  331 (423)
                      ++.++ +++.+.......++|.|+++.+   ....|.+..++.++.+ .+.|+.|+...  .++++++|+|.+      .
T Consensus        33 l~~~~-f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~  109 (152)
T cd02962          33 FTPKT-LEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQL  109 (152)
T ss_pred             cCHHH-HHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCC
Confidence            44443 4444433222234555666532   3346777778887763 47777776432  378999999987      9


Q ss_pred             CeEEEecCCCc
Q 014549          332 PAIVFLKDPGV  342 (423)
Q Consensus       332 Ptl~lfk~~~~  342 (423)
                      ||+++|+++..
T Consensus       110 PT~ilf~~Gk~  120 (152)
T cd02962         110 PTIILFQGGKE  120 (152)
T ss_pred             CEEEEEECCEE
Confidence            99999986543

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=95.58  E-value=0.095  Score=43.33  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=43.6

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccc---cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce---eEecCC
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP---VVYYGS  350 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~---~~y~g~  350 (423)
                      ++|.|+++.+   ....+.+..++..+++   .+.|+.++........++++|++.++|++++|+++....   ..|+|.
T Consensus        22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~  101 (114)
T cd02992          22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGP  101 (114)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccCC
Confidence            4444555432   2235667777776653   355555542222236789999999999999998875332   345554

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>KOG3414 consensus Component of the U4/U6

Probab=95.53  E-value=0.038  Score=45.85  Aligned_cols=74  Identities=12%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             ccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEe
Q 014549          146 FPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       146 f~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      .++.|  .+.+.++|-|=-+|.+.|.++-....++|+.++..+.+.-||.+   ..+++-+-|+      +...||+++|
T Consensus        14 VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdid---eV~~~~~~~~------l~~p~tvmfF   84 (142)
T KOG3414|consen   14 VDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDID---EVPDFVKMYE------LYDPPTVMFF   84 (142)
T ss_pred             HHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecc---hhhhhhhhhc------ccCCceEEEE
Confidence            34445  55788999999999999999999999999999999999999998   5566777787      8899999999


Q ss_pred             CCCCC
Q 014549          224 PPGCK  228 (423)
Q Consensus       224 ~~g~~  228 (423)
                      -+++.
T Consensus        85 fn~kH   89 (142)
T KOG3414|consen   85 FNNKH   89 (142)
T ss_pred             EcCce
Confidence            88765

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK13190 putative peroxiredoxin; Provisional

Probab=95.44  E-value=0.1  Score=47.88  Aligned_cols=91  Identities=12%  Similarity=0.047  Sum_probs=59.2

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh------------------------hhHHHhhCCCC
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL------------------------ATHLAERKPIG  209 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~------------------------~~~l~~~~~~~  209 (423)
                      .+|+.|++.||+.|..-.+.+.++.++++.. +.+..|+++....                        ...+++.||  
T Consensus        30 vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~yg--  107 (202)
T PRK13190         30 VLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYN--  107 (202)
T ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcC--
Confidence            3444688999999999999999999888754 5677777663211                        122333444  


Q ss_pred             cccccc------CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          210 QIFFRR------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~------~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                          +.      .+|+..++-+++... ....|  .+.|+.++++..+...
T Consensus       108 ----v~~~~~g~~~p~~fiId~~G~I~-~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        108 ----LIDENSGATVRGVFIIDPNQIVR-WMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             ----CccccCCcEEeEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence                53      479988887554420 01112  3568999998888654

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=95.43  E-value=0.062  Score=48.94  Aligned_cols=94  Identities=10%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecC-CC--CCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKT-GE--RASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~-~~--~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++..++...... .+.+.++|+ |+.+. ..  ...+.+..+|.+|. .+.|+.+.+..     ....|++...||+++|
T Consensus        87 is~~~f~~eV~~-as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i~~lPTlliy  159 (192)
T cd02988          87 ISKPDYVREVTE-ASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPDKNLPTILVY  159 (192)
T ss_pred             eCHHHHHHHHHh-cCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCCCCCCEEEEE
Confidence            565554333332 222345555 55432 22  24677888998885 57888886433     3689999999999999


Q ss_pred             cCCCcceeE--e---cC-CCChhHHHHHHHh
Q 014549          338 KDPGVKPVV--Y---YG-SFNNSRLSEVMEQ  362 (423)
Q Consensus       338 k~~~~~~~~--y---~g-~~~~~~l~~fi~~  362 (423)
                      +++......  +   -| .++.++|..++.+
T Consensus       160 k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         160 RNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             ECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            987543211  1   12 4667778777765

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=95.39  E-value=0.032  Score=49.17  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHH-HH--HHHHHHhhccceEEEEEcccchhhhHHHhhC--------CCCcccc
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIFF  213 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p-~~--~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~--------~~~~~~~  213 (423)
                      -|+..-..++++||.++.+||+.|+.|.. .|  .++|+.+.....-.+||-++.   +++.+.|        |      
T Consensus        29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~---Pdid~~y~~~~~~~~~------   99 (163)
T PF03190_consen   29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER---PDIDKIYMNAVQAMSG------   99 (163)
T ss_dssp             HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----HHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC---ccHHHHHHHHHHHhcC------
Confidence            34444477999999999999999999885 44  357788877766678887743   4455555        5      


Q ss_pred             ccCccEEEEeCCCCC
Q 014549          214 RRGLPSLVAFPPGCK  228 (423)
Q Consensus       214 i~~~Pti~~f~~g~~  228 (423)
                      ..|+|+.++..+...
T Consensus       100 ~gGwPl~vfltPdg~  114 (163)
T PF03190_consen  100 SGGWPLTVFLTPDGK  114 (163)
T ss_dssp             ---SSEEEEE-TTS-
T ss_pred             CCCCCceEEECCCCC
Confidence            569999988877654

; PDB: 3IRA_A.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.30  E-value=0.074  Score=43.21  Aligned_cols=92  Identities=16%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEe
Q 014549          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      ++.++.+...++.+|-|+..--+   .....|.++|..+.....|+...-.   .   +.++++      +  .|++++|
T Consensus         9 ~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~--~~~ivl~   71 (104)
T cd03069           9 AEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYG------Y--GEGVVLF   71 (104)
T ss_pred             HHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcC------C--CCceEEE
Confidence            44566677788888888776433   4677999999999777788776644   2   667777      7  7889999


Q ss_pred             CCCC---CCCCCcccccCCCCHHHHHHHHHHh
Q 014549          224 PPGC---KSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       224 ~~g~---~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++..   +..+....|.|..+.+.|.+|+...
T Consensus        72 ~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          72 RPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             echhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence            6531   0011234699998999999999754

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=95.28  E-value=0.038  Score=42.42  Aligned_cols=58  Identities=14%  Similarity=0.166  Sum_probs=40.5

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      .-++.|..+||++|++....+++.      .+.+-.+|.+++.....+.+..|      ...+|++.+  +|
T Consensus         8 ~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i--~g   65 (79)
T TIGR02190         8 ESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTG------ATTVPQVFI--GG   65 (79)
T ss_pred             CCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHC------CCCcCeEEE--CC
Confidence            346788999999999988777532      25566788875544445655566      789999853  55

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=95.23  E-value=0.17  Score=46.18  Aligned_cols=93  Identities=11%  Similarity=0.063  Sum_probs=60.2

Q ss_pred             CCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-------------------------hhHHHhh
Q 014549          153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAER  205 (423)
Q Consensus       153 ~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-------------------------~~~l~~~  205 (423)
                      ++++++.||+ .||..|..-.+.+.+++++++.. +.|..|+++....                         ..++++.
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~  115 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS  115 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence            4678889995 78999999889999999998864 6788888773321                         1235555


Q ss_pred             CCCCcccccc------CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          206 KPIGQIFFRR------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       206 ~~~~~~~~i~------~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                      ||      +.      .+|+..++-+...... ...+  .-.++.+++++.+...
T Consensus       116 yg------v~~~~~g~~~r~~fiID~~G~i~~-~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        116 YG------VLEEEQGVAYRGLFIIDPKGMLRQ-ITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             cC------CcccCCCceEEEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHhh
Confidence            55      43      3678777775543100 0011  2356777777777543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.01  Score=53.22  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=44.2

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHc
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELL   87 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~----------~~~~~f~~i~~Ay~~L   87 (423)
                      .|.|.+||+...+++.+|+++||++....|||+-.          ...+++.++++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999632          2466788999998754

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=95.22  E-value=0.12  Score=41.69  Aligned_cols=95  Identities=8%  Similarity=0.094  Sum_probs=67.3

Q ss_pred             eEe-ccCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          139 NVV-TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       139 ~~L-~~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .++ +.++.+.++. +..+.+|=|+..--+   .....|.++|..+.....|+...-.   .   +.+.++      + .
T Consensus         3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~-~   66 (102)
T cd03066           3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLG------L-K   66 (102)
T ss_pred             eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcC------C-C
Confidence            345 3445777787 788888877766433   4567899999999877788776544   2   566665      4 4


Q ss_pred             ccEEEEeCCCCCCCCCcccc-cCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y-~G~~~~~~l~~fi~~~  252 (423)
                      .|++.++++....   ...| .|..+.+.|.+|+...
T Consensus        67 ~~~i~l~~~~~e~---~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          67 MNEVDFYEPFMEE---PVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCcEEEeCCCCCC---CcccCCCCCCHHHHHHHHHHh
Confidence            6999999773221   3469 7888999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PRK15000 peroxidase; Provisional

Probab=95.20  E-value=0.15  Score=46.78  Aligned_cols=100  Identities=8%  Similarity=0.004  Sum_probs=62.6

Q ss_pred             CCCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHh----hCCC---C------------c
Q 014549          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE----RKPI---G------------Q  210 (423)
Q Consensus       152 ~~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~----~~~~---~------------~  210 (423)
                      .++++++.||+ .||+.|..-.+.+.+.+++++.. +.+..|.++........++    +.++   .            .
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            46789999999 59999999999999999999754 5777787773322211111    1111   0            2


Q ss_pred             ccccc------CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          211 IFFRR------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~------~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                      .+++.      ..|+..++-+..... ....+  .-.|+.+++++.+...
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence            23455      578888887544320 00111  1256888888887543

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=95.19  E-value=0.033  Score=43.65  Aligned_cols=79  Identities=8%  Similarity=0.011  Sum_probs=49.3

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~  235 (423)
                      ++.|..|||++|++....++++..+.. .+.+-.+|...+. ...++.+..+..    +..+|+|.  .+|.        
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~if--i~g~--------   66 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKP----VETVPQIF--VDEK--------   66 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEE--ECCE--------
Confidence            577889999999998877776654322 2456677766322 123355555521    46899984  4553        


Q ss_pred             ccCCCCHHHHHHHHHHh
Q 014549          236 FEGELSVDAVTDWFATA  252 (423)
Q Consensus       236 y~G~~~~~~l~~fi~~~  252 (423)
                      +-|.  .++|.+++.+.
T Consensus        67 ~igG--~~dl~~~~~~~   81 (86)
T TIGR02183        67 HVGG--CTDFEQLVKEN   81 (86)
T ss_pred             EecC--HHHHHHHHHhc
Confidence            2233  47788887765

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=95.11  E-value=0.12  Score=47.32  Aligned_cols=41  Identities=15%  Similarity=0.105  Sum_probs=34.5

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD  195 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~  195 (423)
                      .+|+.|+++||+.|..-.+.+.+++++++.. +.+..|+++.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~   69 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS   69 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4566888999999999999999999999765 6788888774

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=94.99  E-value=0.17  Score=42.47  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             eEEEEEe-c-C--CCCCchHHHHHHHhccccceEEEEEccccc-----c----HHHHhhcCCC----CCCeEEEecCCCc
Q 014549          280 VKVIFFS-K-T--GERASPFVRQISRNYWAYASFAFVLWREEE-----S----SIWWNTFEVE----SAPAIVFLKDPGV  342 (423)
Q Consensus       280 ~~vl~f~-~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~----~~l~~~f~v~----~~Ptl~lfk~~~~  342 (423)
                      ..+++|. + +  |....|.+..++.+.  ...+..|++....     +    .++.++|++.    +.||+++|+++..
T Consensus        25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~  102 (122)
T TIGR01295        25 TATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ  102 (122)
T ss_pred             cEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence            5555554 3 2  234578888887763  4567777654221     1    2566777654    4999999998754


Q ss_pred             ceeEecC-CCChhHHHHHHH
Q 014549          343 KPVVYYG-SFNNSRLSEVME  361 (423)
Q Consensus       343 ~~~~y~g-~~~~~~l~~fi~  361 (423)
                      ... ..| ..+.++|.+|+.
T Consensus       103 v~~-~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295       103 VSV-RCGSSTTAQELQDIAA  121 (122)
T ss_pred             EEE-EeCCCCCHHHHHHHhh
Confidence            433 356 556888888864

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=94.95  E-value=0.064  Score=41.55  Aligned_cols=74  Identities=12%  Similarity=0.160  Sum_probs=48.1

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      ++.|..+||++|++....+++      ..+.+-.+|.++++...+..+..|      ...+|++++  ++.       ..
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~-------~~   61 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDL-------SW   61 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCE-------EE
Confidence            456788999999987766643      236778888886554444444456      779999865  332       22


Q ss_pred             cCCCCHHHHHHHHHHh
Q 014549          237 EGELSVDAVTDWFATA  252 (423)
Q Consensus       237 ~G~~~~~~l~~fi~~~  252 (423)
                       +....+.|.+.+...
T Consensus        62 -~Gf~~~~l~~~~~~~   76 (81)
T PRK10329         62 -SGFRPDMINRLHPAP   76 (81)
T ss_pred             -ecCCHHHHHHHHHhh
Confidence             244577777776543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.91  E-value=0.97  Score=47.62  Aligned_cols=174  Identities=11%  Similarity=0.035  Sum_probs=98.1

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      .+++-+.++.+.|..|..+....++++..- +.+++-..+     .               -...|++.+..+|...   
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~-----~---------------~~~~p~~~~~~~~~~~---   73 (517)
T PRK15317         18 ERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDS-----L---------------DVRKPSFSITRPGEDT---   73 (517)
T ss_pred             CCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEcc-----C---------------CCCCCEEEEEcCCccc---
Confidence            444545555557999999888888887654 333332111     0               1147999998766543   


Q ss_pred             cccccCCCCHHHHHHHHHHhhc-cCCceeecccchhhhhhhhhcCCCceEEEEEec-CCCCCc--hHHHHHHHhccccce
Q 014549          233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK-TGERAS--PFVRQISRNYWAYAS  308 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi~~~~~-~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~-~~~~~~--~~~~~~a~~~~~~~~  308 (423)
                      ...|.|-..-.++-.|+...+. ..+... ++ ++ ..+.+..-+...-+-+|.+. +.-|+.  ..+..+|.. ...+.
T Consensus        74 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~  149 (517)
T PRK15317         74 GVRFAGIPMGHEFTSLVLALLQVGGHPPK-LD-QE-VIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNIT  149 (517)
T ss_pred             eEEEEecCccHHHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCce
Confidence            5789987777777777765421 112211 22 22 12333332211123445553 334543  223334443 23444


Q ss_pred             EEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          309 FAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       309 f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +-.+   +.. -++++++|++.+.|++++   ++.  ..+.|..+.+.|.+.+..
T Consensus       150 ~~~i---d~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        150 HTMI---DGALFQDEVEARNIMAVPTVFL---NGE--EFGQGRMTLEEILAKLDT  196 (517)
T ss_pred             EEEE---EchhCHhHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhc
Confidence            3333   333 389999999999999976   222  346788887777777665

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=94.68  E-value=0.22  Score=37.89  Aligned_cols=63  Identities=16%  Similarity=0.251  Sum_probs=45.4

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+..++..+...+.+..+...  +.++++++|++.+.|++++  ++ .  ..+.|..+.+.|.+++..
T Consensus        18 ~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l~~~l~~   80 (82)
T TIGR00411        18 KRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEELVEAIKK   80 (82)
T ss_pred             HHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHHHHHHHh
Confidence            56666677777655666666532  3467899999999999986  33 2  356788888888888875

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.68  E-value=0.071  Score=54.87  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             hhcCCCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC
Q 014549           29 VVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI   71 (423)
Q Consensus        29 ~~~~~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~   71 (423)
                      ++++-|.    |+-+++..=.+.+++|++|||..+..||||.+
T Consensus       384 VLW~es~----WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlq  422 (453)
T KOG0431|consen  384 VLWPESG----WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQ  422 (453)
T ss_pred             hhcCccC----cccCchhhccCHHHHHHHHHhhhheeCccccc
Confidence            4455444    67777777789999999999999999999976

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=94.63  E-value=0.31  Score=47.64  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=39.1

Q ss_pred             cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       306 ~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.||.|..  .....+++++|+...++|.+|+++  ..+.|+|.++.+.|.+||..-
T Consensus        90 gigfg~VD~--~Kd~klAKKLgv~E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl  143 (383)
T PF01216_consen   90 GIGFGMVDS--KKDAKLAKKLGVEEEGSIYVFKDG--EVIEYDGERSADTLVEFLLDL  143 (383)
T ss_dssp             TEEEEEEET--TTTHHHHHHHT--STTEEEEEETT--EEEEE-S--SHHHHHHHHHHH
T ss_pred             CcceEEecc--HHHHHHHHhcCccccCcEEEEECC--cEEEecCccCHHHHHHHHHHh
Confidence            466666653  334789999999999999999864  567889999999999999883

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=94.62  E-value=0.041  Score=44.75  Aligned_cols=91  Identities=14%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCc-c
Q 014549          143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGL-P  218 (423)
Q Consensus       143 ~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~-P  218 (423)
                      .+++++++  +.+++++|.=.+..|+-+......|++......+.+.++-+|.-++|. -..+++++|      |+.= |
T Consensus         7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~------V~HeSP   80 (105)
T PF11009_consen    7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG------VKHESP   80 (105)
T ss_dssp             HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----------SS
T ss_pred             HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC------CCcCCC
Confidence            35677777  348888888889999999998889998888877768999999886654 334688888      7755 9


Q ss_pred             EEEEeCCCCCCCCCccccc---CCCCHHHH
Q 014549          219 SLVAFPPGCKSSDCMTRFE---GELSVDAV  245 (423)
Q Consensus       219 ti~~f~~g~~~~~~~~~y~---G~~~~~~l  245 (423)
                      .++++++|+.      .|.   +..+.++|
T Consensus        81 Q~ili~~g~~------v~~aSH~~It~~~l  104 (105)
T PF11009_consen   81 QVILIKNGKV------VWHASHWDITAEAL  104 (105)
T ss_dssp             EEEEEETTEE------EEEEEGGG-SHHHH
T ss_pred             cEEEEECCEE------EEECccccCCHHhc
Confidence            9999999976      565   34555554

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.47  E-value=1.6  Score=45.94  Aligned_cols=175  Identities=12%  Similarity=0.044  Sum_probs=94.2

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      .+++-+.++.+.|..|..+....++++..- +.+.+-..+-             +      ....|++.+..+|...   
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~-------------~------~~~~p~~~~~~~~~~~---   74 (515)
T TIGR03140        18 ENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTA-------------D------TLRKPSFTILRDGADT---   74 (515)
T ss_pred             CCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecC-------------C------cCCCCeEEEecCCccc---
Confidence            344444444446899988887777777654 3344322111             1      2356999998776543   


Q ss_pred             cccccCCCCHHHHHHHHHHhhc-cCCceeecccchhhhhhhhhcCCCceEEEEEec-CCCCCch--HHHHHHHhccccce
Q 014549          233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK-TGERASP--FVRQISRNYWAYAS  308 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi~~~~~-~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~-~~~~~~~--~~~~~a~~~~~~~~  308 (423)
                      ...|.|-..-..+-.|+...+. ..+... ++. + ..+.+..-+...-+-+|.+. +.-|+..  .+..++... ..+.
T Consensus        75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~~-~-~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~  150 (515)
T TIGR03140        75 GIRFAGIPGGHEFTSLVLAILQVGGHGPK-LDE-G-IIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNIS  150 (515)
T ss_pred             ceEEEecCCcHHHHHHHHHHHHhcCCCCC-CCH-H-HHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCce
Confidence            5689887777777777765411 112111 222 2 12233332211123345553 3345431  223344332 3333


Q ss_pred             EEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          309 FAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       309 f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                         ....+.. -++++++|++.+.|++++   ++.  ..+.|..+.+.+.+.+..
T Consensus       151 ---~~~id~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~l~~  197 (515)
T TIGR03140       151 ---HTMIDGALFQDEVEALGIQGVPAVFL---NGE--EFHNGRMDLAELLEKLEE  197 (515)
T ss_pred             ---EEEEEchhCHHHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhh
Confidence               2233443 388999999999999987   222  346787777666555543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=94.40  E-value=0.059  Score=46.24  Aligned_cols=31  Identities=3%  Similarity=0.144  Sum_probs=26.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHh
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL  182 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l  182 (423)
                      +.++.++.|+.++|++|+++.|.++++....
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~   34 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED   34 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence            3567889999999999999999998877655

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=94.28  E-value=0.25  Score=41.30  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=38.2

Q ss_pred             CchHHHHHHHhccccceEEEEEcccc-----ccHHHHhhcCCC-CCCeEEEecCC
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP  340 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~-----~~~~l~~~f~v~-~~Ptl~lfk~~  340 (423)
                      ..|.+..++.++...+.|..|.+.+.     ....+..+++|. +.||+++|+++
T Consensus        46 ~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~  100 (119)
T cd02952          46 AEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP  100 (119)
T ss_pred             hchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence            36778888888876788888876542     136799999998 99999999654

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK13599 putative peroxiredoxin; Provisional

Probab=94.19  E-value=0.28  Score=45.50  Aligned_cols=97  Identities=6%  Similarity=-0.063  Sum_probs=60.8

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh------------------------hHHHhhCCCC
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA------------------------THLAERKPIG  209 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~------------------------~~l~~~~~~~  209 (423)
                      .+|+.|+++||+.|..-.+.+.++..+++.. +.+..|+++.....                        ..+++.||+.
T Consensus        31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~  110 (215)
T PRK13599         31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI  110 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence            4567899999999999999999999999754 67778887743211                        2234444421


Q ss_pred             c-cccccCccEEEEeCCCCCCCCCccccc--CCCCHHHHHHHHHHh
Q 014549          210 Q-IFFRRGLPSLVAFPPGCKSSDCMTRFE--GELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~-~~~i~~~Pti~~f~~g~~~~~~~~~y~--G~~~~~~l~~fi~~~  252 (423)
                      . .......|++.++-+++... ....|.  ..++.+.|++.+...
T Consensus       111 ~~~~~~~~~R~tfIID~dG~Ir-~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        111 HPGKGTNTVRAVFIVDDKGTIR-LIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             ccCCCCceeeEEEEECCCCEEE-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            0 00013578888887544320 011232  346888888887543

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=94.16  E-value=0.099  Score=39.25  Aligned_cols=53  Identities=13%  Similarity=0.105  Sum_probs=36.2

Q ss_pred             EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ..|..++|++|++....+++      ..+.+-.+|.++++...+..++.|      ..++|++.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~   54 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA   54 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcC------CcccCEEEE
Confidence            45678999999988866653      235777788886554333344446      779999754

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK13189 peroxiredoxin; Provisional

Probab=94.02  E-value=0.31  Score=45.42  Aligned_cols=41  Identities=10%  Similarity=-0.020  Sum_probs=33.3

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD  195 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~  195 (423)
                      .+|+.|+++||+.|..-.+.+.+++++++.. +.+..|.++.
T Consensus        38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~   79 (222)
T PRK13189         38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ   79 (222)
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4556778999999999999999999999754 5777777763

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=93.96  E-value=0.042  Score=52.72  Aligned_cols=88  Identities=9%  Similarity=0.194  Sum_probs=68.8

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      +...++-+.||+.||+..+...|.+.-....+...-.++   .++........++++      +.+.|++.+...-.   
T Consensus        74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~------~~~~ps~~~~n~t~---  141 (319)
T KOG2640|consen   74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYG------IHSEPSNLMLNQTC---  141 (319)
T ss_pred             ccCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccc------cccCCcceeecccc---
Confidence            346677789999999999999999988777776322222   344445666778888      88999999887654   


Q ss_pred             CCcccccCCCCHHHHHHHHHHh
Q 014549          231 DCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       231 ~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        +..|.|.++...|++|-.+.
T Consensus       142 --~~~~~~~r~l~sLv~fy~~i  161 (319)
T KOG2640|consen  142 --PASYRGERDLASLVNFYTEI  161 (319)
T ss_pred             --chhhcccccHHHHHHHHHhh
Confidence              45899999999999999887

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=93.81  E-value=0.39  Score=45.63  Aligned_cols=28  Identities=14%  Similarity=0.114  Sum_probs=22.6

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHH
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI  178 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~  178 (423)
                      .+.+..++.|..|.|++|+++.++..+.
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~  142 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQQARPW  142 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHH
Confidence            3456788999999999999998776543

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=93.77  E-value=0.22  Score=41.09  Aligned_cols=81  Identities=11%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             EEEEEecCC-CCCchHHHHHHHh---ccccceEEEEEccccccHHHHhhcCCCC--CCeEEEecCCCcceeE-ecCCCCh
Q 014549          281 KVIFFSKTG-ERASPFVRQISRN---YWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVV-YYGSFNN  353 (423)
Q Consensus       281 ~vl~f~~~~-~~~~~~~~~~a~~---~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~Ptl~lfk~~~~~~~~-y~g~~~~  353 (423)
                      .+++|+... +.....++.+|.+   +++.+.|+.+...+-  ....+.||+++  .|.+.+....+..... +.+.++.
T Consensus        20 ~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~--~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~   97 (111)
T cd03072          20 LILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF--RHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVP   97 (111)
T ss_pred             EEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh--hhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCH
Confidence            445563211 2234556778989   999988888864332  34899999986  8999988654423333 4678899


Q ss_pred             hHHHHHHHhh
Q 014549          354 SRLSEVMEQN  363 (423)
Q Consensus       354 ~~l~~fi~~~  363 (423)
                      +.|.+|+++.
T Consensus        98 ~~i~~Fv~~~  107 (111)
T cd03072          98 GKLKQFVLDL  107 (111)
T ss_pred             HHHHHHHHHH
Confidence            9999999874

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PRK13191 putative peroxiredoxin; Provisional

Probab=93.77  E-value=0.38  Score=44.56  Aligned_cols=97  Identities=6%  Similarity=-0.068  Sum_probs=59.1

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh------------------------hHHHhhCCCC
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA------------------------THLAERKPIG  209 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~------------------------~~l~~~~~~~  209 (423)
                      .+|+.|+++||+.|..-.+.+.+.+.+++.. +.+..|+++....+                        ..+++.||+-
T Consensus        36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~  115 (215)
T PRK13191         36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI  115 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence            3445778999999999999999999999754 67888887733221                        1334444421


Q ss_pred             ccc-cccCccEEEEeCCCCCCCCCccccc--CCCCHHHHHHHHHHh
Q 014549          210 QIF-FRRGLPSLVAFPPGCKSSDCMTRFE--GELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~-~i~~~Pti~~f~~g~~~~~~~~~y~--G~~~~~~l~~fi~~~  252 (423)
                      ... .....|+..++-+++.. .....|.  -.|+.+++++.+...
T Consensus       116 ~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        116 HAESSTATVRAVFIVDDKGTV-RLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             ccccCCceeEEEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence            000 01135777777654431 0011122  357899998888654

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=93.71  E-value=0.09  Score=46.55  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=34.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc  193 (423)
                      +.++.++.|+.+.|+||+++.+...++.+++.+.+.+..+..
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence            678899999999999999999999999888766665544443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=93.69  E-value=0.15  Score=38.12  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      ++.|..+||+.|.+....+++.      .+.+-.+|.+++.....+-+..|      ...+|+|  |.+|..        
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~~--------   60 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGEL--------   60 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCEE--------
Confidence            5678899999999877655532      25667777775543333444446      7789997  455532        


Q ss_pred             cCCCCHHHHHHHH
Q 014549          237 EGELSVDAVTDWF  249 (423)
Q Consensus       237 ~G~~~~~~l~~fi  249 (423)
                      -|.  .++|.+|+
T Consensus        61 igg--~~~l~~~l   71 (72)
T cd03029          61 IGG--SDDLEKYF   71 (72)
T ss_pred             EeC--HHHHHHHh
Confidence            232  56677765

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=93.69  E-value=0.35  Score=46.17  Aligned_cols=93  Identities=12%  Similarity=0.015  Sum_probs=60.6

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-------------------------hhHHHhh
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAER  205 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-------------------------~~~l~~~  205 (423)
                      ++++++.|| +.||+.|..-.|.+.+..+++++. +.+..|.++....                         ...+++.
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka  177 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS  177 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence            456777777 799999999999999999998754 5677777663211                         1234555


Q ss_pred             CCCCcccccc-----CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          206 KPIGQIFFRR-----GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       206 ~~~~~~~~i~-----~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                      ||      +.     ..|+..++.+++... ....|  ...++.+++++.+...
T Consensus       178 yG------v~~~~g~a~R~tFIID~dG~I~-~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        178 FG------LLRDEGFSHRASVLVDKAGVVK-HVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             cC------CCCcCCceecEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence            55      53     468888886443310 01112  2467888888877543

>PTZ00051 thioredoxin; Provisional

Probab=93.66  E-value=0.33  Score=38.34  Aligned_cols=60  Identities=23%  Similarity=0.248  Sum_probs=38.6

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHH
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLS  357 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~  357 (423)
                      .+.+..++..+. .+.|+.+...  +...++++|++.+.|++++|+++. ....+.|. ..++|.
T Consensus        37 ~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         37 APFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGS-VVDTLLGA-NDEALK   96 (98)
T ss_pred             hHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCe-EEEEEeCC-CHHHhh
Confidence            455666776653 3566666432  236799999999999999997553 33345564 444443

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=93.56  E-value=0.23  Score=47.55  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=45.0

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeE--e----cCCCChhHHHHHHHhhcc
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV--Y----YGSFNNSRLSEVMEQNKL  365 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~--y----~g~~~~~~l~~fi~~~~~  365 (423)
                      ...+..+|.+|. .++|..+....+.   +..+|.+...|+|++|++++.....  .    ...++..+|..|+.++..
T Consensus       165 n~~L~~LA~kyp-~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~  239 (265)
T PF02114_consen  165 NSCLECLARKYP-EVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV  239 (265)
T ss_dssp             HHHHHHHHHH-T-TSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred             HHHHHHHHHhCC-ceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence            345567888874 6889888765543   6788999899999999976543211  1    124677899999988654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.37  E-value=0.2  Score=37.58  Aligned_cols=56  Identities=7%  Similarity=0.046  Sum_probs=36.1

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCcccccc-CccEEEEeCCC
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRR-GLPSLVAFPPG  226 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~-~~Pti~~f~~g  226 (423)
                      ++.|..+||++|++....+++.      .+.+-.+|.++++. ...+-+..+      .. ++|+|.  .+|
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v~--i~g   59 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSG------GRRTVPQIF--IGD   59 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhC------CCCccCEEE--ECC
Confidence            4677889999999988777642      25677788775422 233334445      45 889774  444

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=93.34  E-value=1  Score=36.85  Aligned_cols=53  Identities=15%  Similarity=0.221  Sum_probs=38.6

Q ss_pred             EEEEccccccHHHHhhcCCCCCCeEEEecC-CCcceeEecCCCChhHHHHHHHh
Q 014549          310 AFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       310 ~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~-~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+...+.+...++..|++.++|+++++.+ .+..-....|..+.+.+.+.+++
T Consensus        56 ~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~  109 (114)
T cd02958          56 WQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE  109 (114)
T ss_pred             EEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence            333333334478999999999999999976 44444556899998888777765

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=93.12  E-value=0.24  Score=37.20  Aligned_cols=53  Identities=11%  Similarity=0.016  Sum_probs=35.9

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      ++.|..|||++|++....+++.      .+.+-.+|..+++. ..++.+..+      -..+|++.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g------~~~vP~v~   56 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTG------SSVVPQIF   56 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence            4678899999999988666642      25677788875432 334555555      56889873

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.02  E-value=0.12  Score=39.43  Aligned_cols=55  Identities=11%  Similarity=0.096  Sum_probs=36.0

Q ss_pred             EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      +.|..|||++|++....+++.      .+.+-.+|.+.++. ..++.+..|      ..++|+|  |.+|
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i--~i~g   57 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSG------RRTVPQI--FIGD   57 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence            567789999999988888653      24566667664432 233444445      6789997  4455

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=92.91  E-value=0.21  Score=40.61  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=28.9

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi  360 (423)
                      .++.+.|+|.++||++++...+.....+.|-.+.+.|.+++
T Consensus        72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            46899999999999999965555445568999988887764

...

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=92.64  E-value=0.29  Score=37.79  Aligned_cols=54  Identities=13%  Similarity=0.191  Sum_probs=34.6

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--hhhHHHhhC-CCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERK-PIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--~~~~l~~~~-~~~~~~~i~~~Pti~~  222 (423)
                      ++.|-.|+|++|++....+.      +..+.+..++.+.+.  ...+..++. |      .+++|+|.+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g------~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKG------QRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCC------CCCcCEEEE
Confidence            45677899999988776665      222466666666443  333344444 5      789998765

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=92.56  E-value=0.21  Score=40.19  Aligned_cols=62  Identities=13%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhH----HHhhCCCCccccccCccEEEEeC
Q 014549          149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFP  224 (423)
Q Consensus       149 ~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~----l~~~~~~~~~~~i~~~Pti~~f~  224 (423)
                      .|+++.  ++.|-.|||++|++....+++.      .+.+..+|.++++...+    +.+..|      ...+|+|  |.
T Consensus         4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi   67 (99)
T TIGR02189         4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FV   67 (99)
T ss_pred             hhccCC--EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EE
Confidence            344444  5678899999999888766543      24455677764433222    333334      6788987  55


Q ss_pred             CC
Q 014549          225 PG  226 (423)
Q Consensus       225 ~g  226 (423)
                      +|
T Consensus        68 ~g   69 (99)
T TIGR02189        68 GG   69 (99)
T ss_pred             CC
Confidence            55

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=92.36  E-value=0.082  Score=47.34  Aligned_cols=61  Identities=16%  Similarity=0.313  Sum_probs=47.6

Q ss_pred             cccccccccCCCC--HHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           38 SHYDALGIKPYSS--VEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        38 d~y~~lg~~~~a~--~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      |++..+|..+.+.  .+.++..|+.+.+.+|||+...        ..+.+..++.||.+|.+|..|..|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            4555666665443  4459999999999999998642        23458999999999999999999965

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=92.15  E-value=0.47  Score=39.09  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             chHHHHHHHhcc-ccceEEEEEccccccHHHHhhcCCCC----CCeEEEecCCCcceeEecCCC-ChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVES----APAIVFLKDPGVKPVVYYGSF-NNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~-~~~~f~~v~~~~~~~~~l~~~f~v~~----~Ptl~lfk~~~~~~~~y~g~~-~~~~l~~fi~~~  363 (423)
                      ...++.+|.+|+ +.+.|+.+...+-  ....+.||+++    .|++.++...+ +.....++. +.++|.+|++..
T Consensus        37 ~~~~~~vAk~fk~gki~Fv~~D~~~~--~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          37 RNRVLKVAKDFPDRKLNFAVADKEDF--SHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             HHHHHHHHHHCcCCeEEEEEEcHHHH--HHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            344567999999 6888888754322  34788999984    89999986533 222236778 899999999863

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>TIGR02740 TraF-like TraF-like protein

Probab=91.54  E-value=1.6  Score=41.95  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=52.1

Q ss_pred             eEEEEEec-CCCC--CchHHHHHHHhccccceEEEEEccccc---------cHHHHhhcCCCCCCeEEEecCCCcc-eeE
Q 014549          280 VKVIFFSK-TGER--ASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVK-PVV  346 (423)
Q Consensus       280 ~~vl~f~~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~---------~~~l~~~f~v~~~Ptl~lfk~~~~~-~~~  346 (423)
                      .+|.|+.+ |..|  ..|.+..++.+|.  +.+..|......         ...++++|||...|+++++++++.. ...
T Consensus       169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v  246 (271)
T TIGR02740       169 GLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPI  246 (271)
T ss_pred             EEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEE
Confidence            34445554 2223  3577777887763  455555543211         2458899999999999999874333 234


Q ss_pred             ecCCCChhHHHHHHHh
Q 014549          347 YYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       347 y~g~~~~~~l~~fi~~  362 (423)
                      ..|.++.+.|.+.|..
T Consensus       247 ~~G~~s~~eL~~~i~~  262 (271)
T TIGR02740       247 GFGVMSADELVDRILL  262 (271)
T ss_pred             EeCCCCHHHHHHHHHH
Confidence            4688888888887765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=91.46  E-value=0.86  Score=36.58  Aligned_cols=82  Identities=13%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             ceEEEEEecCCCCCchH---HHHHHHhccccceEEEEEccccccHHHHhhcCCC----CCC-eEEEecCCCcceeEecCC
Q 014549          279 KVKVIFFSKTGERASPF---VRQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAP-AIVFLKDPGVKPVVYYGS  350 (423)
Q Consensus       279 ~~~vl~f~~~~~~~~~~---~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~----~~P-tl~lfk~~~~~~~~y~g~  350 (423)
                      .++|+|..+. ......   +..+|...++.-..++|.-.+.+...||+++++.    .-| .|.-|++++ -.-.|+..
T Consensus        21 NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~-fHkdYdR~   98 (112)
T cd03067          21 NVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGD-FHTEYNRQ   98 (112)
T ss_pred             cEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCC-ccccccch
Confidence            3556555432 222333   3446666666655555554444558899999998    455 345566544 33457778


Q ss_pred             CChhHHHHHHHh
Q 014549          351 FNNSRLSEVMEQ  362 (423)
Q Consensus       351 ~~~~~l~~fi~~  362 (423)
                      .+..++..|++.
T Consensus        99 ~t~kSmv~FlrD  110 (112)
T cd03067          99 LTFKSMVAFLRD  110 (112)
T ss_pred             hhHHHHHHHhhC
Confidence            888889988865

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PRK10638 glutaredoxin 3; Provisional

Probab=91.36  E-value=0.42  Score=36.90  Aligned_cols=54  Identities=7%  Similarity=0.074  Sum_probs=35.6

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++.|..+||++|++....+++.      .+.+..+|+++++ ...++.+..|      ...+|+|.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g------~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSG------RTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhC------CCCcCEEEE
Confidence            4556679999999888666542      2566778887554 2334455556      678998743

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=91.23  E-value=0.47  Score=38.78  Aligned_cols=69  Identities=25%  Similarity=0.326  Sum_probs=45.2

Q ss_pred             hhhhhhhcCCCceEEEEEecCCCCC------chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC
Q 014549          268 GKNFLAKTGPHKVKVIFFSKTGERA------SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~~~~~~~------~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~  341 (423)
                      ++.|+....   ..|+|+..+....      ...+=.+...+......+.+.  ......+..+||+...|++++|+++.
T Consensus        19 ld~~l~~~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~   93 (107)
T PF07449_consen   19 LDAFLAAPG---DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGR   93 (107)
T ss_dssp             HHHHHHCCS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred             HHHHHhCCC---cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCE
Confidence            678887544   6788887543221      122334666777776666654  23347899999999999999999764

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=90.75  E-value=0.36  Score=41.88  Aligned_cols=44  Identities=9%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHh--hccceEEEEEcc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELG  194 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l--~~~~~~~~Vdc~  194 (423)
                      .+.++.++.|..+.|+||.++.+...++-+.+  .|.+.+..++..
T Consensus        10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~   55 (162)
T PF13462_consen   10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP   55 (162)
T ss_dssp             TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred             CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence            34677899999999999999999999988888  677777777664

...

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=90.55  E-value=0.48  Score=39.94  Aligned_cols=71  Identities=14%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             cccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCcc-EEEEe
Q 014549          147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP-SLVAF  223 (423)
Q Consensus       147 ~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P-ti~~f  223 (423)
                      ++.|  ..++.++|-|=.+|-+.|.++-....++|+.++....++.||.+   .-+++.+-|.      +. -| |+++|
T Consensus        12 DqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~---~Vpdfn~~ye------l~-dP~tvmFF   81 (133)
T PF02966_consen   12 DQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDID---EVPDFNQMYE------LY-DPCTVMFF   81 (133)
T ss_dssp             HHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETT---TTHCCHHHTT------S--SSEEEEEE
T ss_pred             HHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcc---cchhhhcccc------cC-CCeEEEEE
Confidence            3444  56889999999999999999999999999999999999999999   5555777777      66 45 46666


Q ss_pred             CCCC
Q 014549          224 PPGC  227 (423)
Q Consensus       224 ~~g~  227 (423)
                      -+++
T Consensus        82 ~rnk   85 (133)
T PF02966_consen   82 FRNK   85 (133)
T ss_dssp             ETTE
T ss_pred             ecCe
Confidence            4554

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.53  E-value=1.6  Score=40.85  Aligned_cols=78  Identities=23%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             eEEEEEec-C--CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|-|..+ +  ++...|.+..++.+|. ..-|..|.+..|  +..+..+||+.-||+++|+++... ..+.|. +...|
T Consensus        24 v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~ki-d~~qGA-d~~gL   98 (288)
T KOG0908|consen   24 VVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGVKI-DQIQGA-DASGL   98 (288)
T ss_pred             EEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCeEe-eeecCC-CHHHH
Confidence            45556554 2  2445799999999985 445777777666  467889999999999999876433 223443 33344


Q ss_pred             HHHHHh
Q 014549          357 SEVMEQ  362 (423)
Q Consensus       357 ~~fi~~  362 (423)
                      .+-|.+
T Consensus        99 e~kv~~  104 (288)
T KOG0908|consen   99 EEKVAK  104 (288)
T ss_pred             HHHHHH
Confidence            444443

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=90.35  E-value=0.98  Score=48.22  Aligned_cols=57  Identities=14%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             cceEEEEEcccc--ccHHHHhhcCCCCCCeEEEecCCCcc--eeEecCCCChhHHHHHHHh
Q 014549          306 YASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       306 ~~~f~~v~~~~~--~~~~l~~~f~v~~~Ptl~lfk~~~~~--~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+..+++.+.  +..++.++|++.+.|++++|+.+++.  ...+.|..+.+++.+++++
T Consensus       508 ~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~  568 (571)
T PRK00293        508 DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ  568 (571)
T ss_pred             CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence            355666665443  23689999999999999999754443  2456788899999999886

>PHA03050 glutaredoxin; Provisional

Probab=90.34  E-value=0.33  Score=39.84  Aligned_cols=65  Identities=9%  Similarity=0.104  Sum_probs=38.7

Q ss_pred             ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc---hh-hhHHHhhCCCCccccccCccEEEEeC
Q 014549          149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RL-ATHLAERKPIGQIFFRRGLPSLVAFP  224 (423)
Q Consensus       149 ~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~---~~-~~~l~~~~~~~~~~~i~~~Pti~~f~  224 (423)
                      .+++++  ++.|..+||++|++....+++..-..   -.+-.+|.+++   .. ...+-+.-|      ...+|+|  |.
T Consensus         9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG------~~tVP~I--fI   75 (108)
T PHA03050          9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GRTVPRI--FF   75 (108)
T ss_pred             HhccCC--EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcC------CCCcCEE--EE
Confidence            344444  57789999999999887776553211   13555666531   11 223444445      6789998  44


Q ss_pred             CC
Q 014549          225 PG  226 (423)
Q Consensus       225 ~g  226 (423)
                      +|
T Consensus        76 ~g   77 (108)
T PHA03050         76 GK   77 (108)
T ss_pred             CC
Confidence            45

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=90.21  E-value=0.91  Score=37.06  Aligned_cols=92  Identities=13%  Similarity=0.089  Sum_probs=61.3

Q ss_pred             CCcccccCCC-CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          144 EDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       144 ~nf~~~v~~~-~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++.+..+... ++.+|=|+..--+   .....|.++|..+.....|+...-.   .   +.++++      +. .|.+++
T Consensus         9 ~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~---~~~~~~------~~-~~~vvl   72 (107)
T cd03068           9 KQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E---IFKSLK------VS-PGQLVV   72 (107)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H---HHHhcC------CC-CCceEE
Confidence            4456666555 6777777765433   4567899999999888888776544   2   666766      54 577888


Q ss_pred             eCCCCCC---CCCcccccCC-CCHHH-HHHHHHH
Q 014549          223 FPPGCKS---SDCMTRFEGE-LSVDA-VTDWFAT  251 (423)
Q Consensus       223 f~~g~~~---~~~~~~y~G~-~~~~~-l~~fi~~  251 (423)
                      |++..-.   .+....|.|. .+.++ |.+|+..
T Consensus        73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            8765321   2234467877 56655 9999864

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=90.17  E-value=0.63  Score=36.65  Aligned_cols=50  Identities=12%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEEEeCCC
Q 014549          163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      |||++|++....+++..      +.+-.+|..++... ..+.+..|      ...+|+|  |.+|
T Consensus        21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g------~~tvP~v--fi~g   71 (90)
T cd03028          21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSN------WPTFPQL--YVNG   71 (90)
T ss_pred             CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence            79999998876665432      56777787655433 33444445      6788997  4455

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=89.66  E-value=0.44  Score=38.20  Aligned_cols=50  Identities=12%  Similarity=0.037  Sum_probs=31.9

Q ss_pred             CCCccccccHHHHHHHHHHhhccceEEEEEcccchhhh-HHHhhCCCCccccccCccEEEEeCCC
Q 014549          163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~-~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      |||++|++....+.+..      +.+-.+|..+++... .+.+..|      ...+|+|.  .+|
T Consensus        25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg------~~tvP~vf--i~g   75 (97)
T TIGR00365        25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSN------WPTIPQLY--VKG   75 (97)
T ss_pred             CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhC------CCCCCEEE--ECC
Confidence            89999998887765532      456677876443322 3444445      66889874  444

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=89.23  E-value=0.37  Score=44.25  Aligned_cols=41  Identities=15%  Similarity=0.216  Sum_probs=31.8

Q ss_pred             CCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL  193 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc  193 (423)
                      +++-+|+|++..|+||.++.|.+   +.+.+.+.+.+.+..+..
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            35679999999999999999865   777777766656655544

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=89.13  E-value=0.85  Score=35.11  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=52.8

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      ++.|..|.|+-|..+....++++..  ..+.+-.||.+++   .++-++|+      . ..|.+.+=..++.  ......
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d---~~l~~~Y~------~-~IPVl~~~~~~~~--~~~~~~   67 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDED---PELFEKYG------Y-RIPVLHIDGIRQF--KEQEEL   67 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTT---HHHHHHSC------T-STSEEEETT-GGG--CTSEEE
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCC---HHHHHHhc------C-CCCEEEEcCcccc--ccccee
Confidence            6778899999998877666554332  2378999999944   45889997      3 6898765432211  002245


Q ss_pred             cCCCCHHHHHHHHH
Q 014549          237 EGELSVDAVTDWFA  250 (423)
Q Consensus       237 ~G~~~~~~l~~fi~  250 (423)
                      .+..+.+.|.+|++
T Consensus        68 ~~~~d~~~L~~~L~   81 (81)
T PF05768_consen   68 KWRFDEEQLRAWLE   81 (81)
T ss_dssp             ESSB-HHHHHHHHH
T ss_pred             CCCCCHHHHHHHhC
Confidence            57889999999874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=88.46  E-value=2.8  Score=36.75  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=35.3

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+.+.|++...|+++++.+++.....+.|..+.+.+.++++.
T Consensus       128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence            5688999999999999997666555566888888899998876

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=88.04  E-value=0.85  Score=38.47  Aligned_cols=53  Identities=21%  Similarity=0.137  Sum_probs=36.7

Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChh
Q 014549           38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPL   91 (423)
Q Consensus        38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~   91 (423)
                      .-..||||++..+.++|.+.|.+|-...+|++. |..=-=-.|..|.+.|..+.
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999986 44333456677777776443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=87.28  E-value=1.2  Score=40.76  Aligned_cols=83  Identities=18%  Similarity=0.247  Sum_probs=61.5

Q ss_pred             cceeeEecc-CCcccccCC---CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCc
Q 014549          135 VHAFNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       135 ~~~v~~L~~-~nf~~~v~~---~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      ..-|++|+. +.|-+.|+.   ....+|..|-|.-.-|..+.....=+|.++ ..++|.+|-.+   . .      +.+.
T Consensus       137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss---~-~------gas~  205 (273)
T KOG3171|consen  137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS---N-T------GASD  205 (273)
T ss_pred             cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec---c-c------cchh
Confidence            334888876 568778833   355678999999999999988888777764 34789888876   2 1      2233


Q ss_pred             cccccCccEEEEeCCCCC
Q 014549          211 IFFRRGLPSLVAFPPGCK  228 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~  228 (423)
                      +|....+||+.+|.+|.-
T Consensus       206 ~F~~n~lP~LliYkgGeL  223 (273)
T KOG3171|consen  206 RFSLNVLPTLLIYKGGEL  223 (273)
T ss_pred             hhcccCCceEEEeeCCch
Confidence            444889999999999864

>smart00594 UAS UAS domain

Probab=86.63  E-value=5  Score=33.37  Aligned_cols=49  Identities=14%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             EEccccccHHHHhhcCCCCCCeEEEecCCCcc---ee--EecCCCChhHHHHHH
Q 014549          312 VLWREEESSIWWNTFEVESAPAIVFLKDPGVK---PV--VYYGSFNNSRLSEVM  360 (423)
Q Consensus       312 v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~---~~--~y~g~~~~~~l~~fi  360 (423)
                      +.+.+.+...+++.|++.++|+++++...+..   .+  ...|..+.++|..++
T Consensus        68 ~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       68 VDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             ecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            44444444789999999999999999654421   11  247888888877765

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=86.59  E-value=0.78  Score=41.45  Aligned_cols=99  Identities=18%  Similarity=0.321  Sum_probs=67.8

Q ss_pred             eeEeccCCccccc--CC-CCcEEEEEecCCCccccccHHHHHHHHHHhhcc--ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          138 FNVVTSEDFPSIF--HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       138 v~~L~~~nf~~~v--~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~--~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      |..++..+|.+-|  .+ +-.++|..|...-+.|.-+.-.++.+|..+...  +++-.-.|..|         |+     
T Consensus        93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpN---------YP-----  158 (240)
T KOG3170|consen   93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPN---------YP-----  158 (240)
T ss_pred             eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCC---------Cc-----
Confidence            6778888887666  34 444568899999999999999999999988654  34444456643         33     


Q ss_pred             cccCccEEEEeCCCCCCCCC---cccccCC-CCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDC---MTRFEGE-LSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~---~~~y~G~-~~~~~l~~fi~~~  252 (423)
                       =...|||++|..|... .+   +-.+-|. .+.+++..++-+.
T Consensus       159 -e~nlPTl~VY~~G~lk-~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  159 -ESNLPTLLVYHHGALK-KQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             -ccCCCeEEEeecchHH-hheehhhhhcCCcCCHHHHHHHHHhc
Confidence             4578999999999752 11   1123343 3566666666554

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=86.54  E-value=4.8  Score=32.81  Aligned_cols=93  Identities=16%  Similarity=0.106  Sum_probs=45.5

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCCCCCchH--H---HHHHHhccccceEEEEEccccc--cHHHHhhcCCCC-CCe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPF--V---RQISRNYWAYASFAFVLWREEE--SSIWWNTFEVES-APA  333 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~--~---~~~a~~~~~~~~f~~v~~~~~~--~~~l~~~f~v~~-~Pt  333 (423)
                      +++.+.+++++... .++++++|=.+. .|+.+.  +   ........+.+.++++.+.+.-  +..++++|||.. .|-
T Consensus         4 L~t~eql~~i~~~S-~~~~~~iFKHSt-~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ   81 (105)
T PF11009_consen    4 LTTEEQLEEILEES-KEKPVLIFKHST-RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ   81 (105)
T ss_dssp             --SHHHHHHHHHH----SEEEEEEE-T-T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred             cCCHHHHHHHHHhc-ccCcEEEEEeCC-CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence            34444466777652 344666653332 233222  1   2222222223778888765542  478999999986 999


Q ss_pred             EEEecCCCcceeEecCCCChhHH
Q 014549          334 IVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       334 l~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      +++++++...-..-+..++.+.|
T Consensus        82 ~ili~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   82 VILIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEEEETTEEEEEEEGGG-SHHHH
T ss_pred             EEEEECCEEEEECccccCCHHhc
Confidence            99999765433333556666655

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.83  E-value=1.6  Score=39.97  Aligned_cols=72  Identities=17%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             hhhhhhhcCCCceEEEEEec---CCCCCchHHHHHHHhcc-ccceEEEEEccccccHHHHhhcCCC------CCCeEEEe
Q 014549          268 GKNFLAKTGPHKVKVIFFSK---TGERASPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVE------SAPAIVFL  337 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~~---~~~~~~~~~~~~a~~~~-~~~~f~~v~~~~~~~~~l~~~f~v~------~~Ptl~lf  337 (423)
                      .+.-+..+....|++=||+.   ++...+|.+-.++.+|. +.++||.|....=  ++.+++|+|+      ..||+++|
T Consensus       135 ~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf--pd~a~kfris~s~~srQLPT~ilF  212 (265)
T KOG0914|consen  135 EDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF--PDVAAKFRISLSPGSRQLPTYILF  212 (265)
T ss_pred             HHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC--cChHHheeeccCcccccCCeEEEE
Confidence            33334333334578878863   34456788888888887 5588999865432  5688999996      28999999


Q ss_pred             cCCC
Q 014549          338 KDPG  341 (423)
Q Consensus       338 k~~~  341 (423)
                      +++.
T Consensus       213 q~gk  216 (265)
T KOG0914|consen  213 QKGK  216 (265)
T ss_pred             ccch
Confidence            8764

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=84.70  E-value=4  Score=38.15  Aligned_cols=54  Identities=11%  Similarity=0.066  Sum_probs=43.3

Q ss_pred             cceeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceE
Q 014549          135 VHAFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANT  188 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~  188 (423)
                      +++|+.++.++..++.   +.++|.+++|=|-.|+.=..-.+.|+++++++.+.+.|
T Consensus        81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adF  137 (237)
T PF00837_consen   81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADF  137 (237)
T ss_pred             CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhhe
Confidence            5568999888854444   88999999999999988877778999999988875433

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PRK10824 glutaredoxin-4; Provisional

Probab=83.80  E-value=1.7  Score=36.07  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=28.4

Q ss_pred             CCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhH-HHhhCCCCccccccCccEEEEeCCC
Q 014549          163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~-l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      |||++|++....+.+..      +.+..+|..++..... |-+.-|      ...+|.|  |.+|
T Consensus        28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg------~~TVPQI--FI~G   78 (115)
T PRK10824         28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYAN------WPTFPQL--WVDG   78 (115)
T ss_pred             CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhC------CCCCCeE--EECC
Confidence            79999999887776542      3445566654432222 222223      5566764  4455

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=83.54  E-value=3.2  Score=36.18  Aligned_cols=54  Identities=13%  Similarity=-0.019  Sum_probs=41.3

Q ss_pred             CcEEEEEe-cCCCcccccc-HHHHHHHHHHhhcc-c-eEEEEEcccchhhhHHHhhCC
Q 014549          154 KPWLIQVY-SDGSYLCGQF-SGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       154 ~~~lV~FY-apwC~~C~~~-~p~~~~~A~~l~~~-~-~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      +++++.|| +.||+.|..- .+.+.+...+++.. + .+..|.++........+++.+
T Consensus        30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~   87 (155)
T cd03013          30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALG   87 (155)
T ss_pred             CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhC
Confidence            34555555 6799999997 99999999998755 3 588898886656666777776

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=83.20  E-value=2.5  Score=44.13  Aligned_cols=52  Identities=10%  Similarity=0.179  Sum_probs=42.7

Q ss_pred             CCCchHHHHHHHhccccceEEEEEccccc---cHHHHhhcCCCCCCeEEEecCCC
Q 014549          290 ERASPFVRQISRNYWAYASFAFVLWREEE---SSIWWNTFEVESAPAIVFLKDPG  341 (423)
Q Consensus       290 ~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~~~l~~~f~v~~~Ptl~lfk~~~  341 (423)
                      -...|.++.+|......-.+..|...||.   +..+|..|+|+.+|+|.+|+.+.
T Consensus        73 r~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~  127 (606)
T KOG1731|consen   73 RAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDS  127 (606)
T ss_pred             hhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCcc
Confidence            45689999998877777777777777884   36899999999999999998763

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=83.18  E-value=7.3  Score=31.85  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=29.4

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHH
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE  358 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~  358 (423)
                      ..+++.|++.+.|+++++.+++ ....+.|-.+.+.|.+
T Consensus        83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            5689999999999999997665 4445578777777654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=82.97  E-value=5.2  Score=30.20  Aligned_cols=59  Identities=17%  Similarity=0.167  Sum_probs=37.5

Q ss_pred             CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCC-ChhHHHHHH
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM  360 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~-~~~~l~~fi  360 (423)
                      ..+.++.++.++...+.+..+.     +.+.+.++++.+.|++++  ++ . . .+.|.. +.+.|.+++
T Consensus        16 ~~~~~~~~~~e~~~~~~~~~v~-----~~~~a~~~~v~~vPti~i--~G-~-~-~~~G~~~~~~~l~~~l   75 (76)
T TIGR00412        16 TEKNVKKAVEELGIDAEFEKVT-----DMNEILEAGVTATPGVAV--DG-E-L-VIMGKIPSKEEIKEIL   75 (76)
T ss_pred             HHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHcCCCcCCEEEE--CC-E-E-EEEeccCCHHHHHHHh
Confidence            3456677777776555555543     233577899999999999  32 2 2 256753 446777765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=82.10  E-value=2  Score=43.83  Aligned_cols=60  Identities=8%  Similarity=-0.024  Sum_probs=35.8

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC---CCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP---IGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~---~~~~~~i~~~Pti~~  222 (423)
                      ++.|..|||++|++.+..+.+.      .+.+-.+|.++++...++-++.+   +....+.+.+|+|.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            5678899999998877665542      25777888875543222222211   000111678899855

>PTZ00062 glutaredoxin; Provisional

Probab=80.83  E-value=8  Score=35.52  Aligned_cols=71  Identities=13%  Similarity=0.108  Sum_probs=45.1

Q ss_pred             eEEEEEe-c-CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549          280 VKVIFFS-K-TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (423)
Q Consensus       280 ~~vl~f~-~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~  355 (423)
                      ..|++|. + +.+|  ..+.+..++.+| ..+.|..|.   .+       |+|...|++++|+++... -.+.|. +...
T Consensus        19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~---~d-------~~V~~vPtfv~~~~g~~i-~r~~G~-~~~~   85 (204)
T PTZ00062         19 KLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVN---LA-------DANNEYGVFEFYQNSQLI-NSLEGC-NTST   85 (204)
T ss_pred             cEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEc---cc-------cCcccceEEEEEECCEEE-eeeeCC-CHHH
Confidence            5666664 3 2233  346667788887 457787774   11       999999999999876532 233443 4566


Q ss_pred             HHHHHHhh
Q 014549          356 LSEVMEQN  363 (423)
Q Consensus       356 l~~fi~~~  363 (423)
                      |..++..+
T Consensus        86 ~~~~~~~~   93 (204)
T PTZ00062         86 LVSFIRGW   93 (204)
T ss_pred             HHHHHHHH
Confidence            66666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	423
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-12
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		3e-11
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		3e-05
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		4e-05
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-04
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		7e-04

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 64  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 116
Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS G   C   +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 176
Query: 215 RGLPSL 220
            G+ ++
Sbjct: 177 SGMAAV 182

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K +  ++ P+      DFLKI  AYE+L D   ++ 
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG   +  + +    QY   SY R D  + D     +     +   +F +  +  + 
Sbjct: 83  YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 135
Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
           W +  YS GS      +  W+  A  ++G+   G V  GD R+   +        +F FR
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 195
Query: 215 RGLPSL 220
            G+ ++
Sbjct: 196 SGMAAV 201

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVY 99
           YD LG+ P ++ +++K+ Y K + K++  +    T  F +I  A+E+L DP  +  YD Y
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY 70
Query: 100 GID 102
           G++
Sbjct: 71  GLE 73

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 38  SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYD 97
           ++YD LG+KP ++ E++K+AY K + K++  +       F +I  AYE+L+D   +  YD
Sbjct: 7   TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
Query: 98  VYG 100
             G
Sbjct: 67  KGG 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDV 98
           +YD LG+KP +S  ++K+AY K + K++  +       F +I  AYE+L+D   ++ YD 
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69
Query: 99  YG 100
            G
Sbjct: 70  GG 71

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 23  GLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKI 80
           G+   L  L   F P  Y  LG+   +S   +K+AY+K + +W+    + P   D F++I
Sbjct: 7   GILQSLSAL--DFDP--YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQI 62
Query: 81  QYAYELLTDPLWKRNYDVYG 100
             AYE+L++   + NYD YG
Sbjct: 63  SKAYEILSNEEKRTNYDHYG 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-20
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-11
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-04
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-08
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-08
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-08
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-07
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-07
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-07
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	3e-07
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-07
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-07
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	6e-07
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	6e-07
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	8e-07
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-06
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-06
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	6e-06
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	7e-06
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	7e-06
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	8e-06
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	9e-06
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-05
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	7e-05
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	9e-05
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-04
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-04
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	4e-04
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	5e-04

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 87.2 bits (216), Expect = 4e-20
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K     N      +  DFLKI  AYE+L D   ++ 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRKK 63

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG        + + +  G +  S                   +   +F +  +  + 
Sbjct: 64  YDKYG-----E--KGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 116

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215
           W +  YS G   C   +  W+  A  ++G+   G V  GD R    L   K +       
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDR---MLCRMKGV------N 167

Query: 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW 248
             PSL  F  G  +     ++ G+ S +++  +
Sbjct: 168 SYPSLFIFRSGMAA----VKYNGDRSKESLVAF 196

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 73.3 bits (179), Expect = 4e-14
 Identities = 57/346 (16%), Positives = 119/346 (34%), Gaps = 36/346 (10%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S  ++++A++K + K     N      +  DFLKI  AYE+L D   ++ 
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRKK 82

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
           YD YG            E +    Y                    +   +F +  +  + 
Sbjct: 83  YDKYGEKGLEDNQGGQYESWSYYRYDF-------GIYDDDPEIITLERREFDAAVNSGEL 135

Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFR 214
           W +  YS GS      +  W+  A  ++          G +R+   +  + + + ++   
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVD----------GLLRIGAVNCGDDRMLCRMKGV 185

Query: 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAK 274
              PSL  F  G  +      + G+ S +++  +   A+  +             N +  
Sbjct: 186 NSYPSLFIFRSGMAAVK----YNGDRSKESLVAF---AMQHVRSTVTELSTGNFVNAIET 238

Query: 275 TGPHKVKVI--FFSKTGERASPFVR-QISRNYWAYASFAFVLWREEESSIWWNTFEVESA 331
                V  +  F SK  +  +   R ++S       +  +V    ++S     + +  ++
Sbjct: 239 AFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLC--KSLDTTAS 296

Query: 332 PAIVFLK-DPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTS 376
               F               F NS  ++ +    +  LP    +++
Sbjct: 297 TTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSA 342

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 43/265 (16%), Positives = 89/265 (33%), Gaps = 26/265 (9%)

Query: 109 EKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC 168
           ++    +G++    I     ++ +  V     +  ++FP+   D +PWL+  ++  S   
Sbjct: 416 KEYEIHHGKKILYDILAFAKESVNSHVT---TLGPQNFPA--SDKEPWLVDFFAPWSPPS 470

Query: 169 GQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228
                  +  + LL G    G +   D  +   L     I      +  P+ V F     
Sbjct: 471 RALLPELRKASTLLYGQLKVGTL---DCTIHEGLCNMYNI------QAYPTTVVFNQS-- 519

Query: 229 SSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT 288
               +  +EG  S + + ++      + P +   T  +  +    +       V F+S  
Sbjct: 520 ---SIHEYEGHHSAEQILEFIEDL--RNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPW 574

Query: 289 G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV 345
               +   P  ++++R      +   V   +  S        V+  P I F      K  
Sbjct: 575 SHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFC--TQENVQRYPEIRFYPQKSSKAY 632

Query: 346 VYYGSFNNSRLSEVMEQNKLQELPQ 370
            Y+     +R +  +    L  LPQ
Sbjct: 633 QYHSYNGWNRDAYSLRSWGLGFLPQ 657

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 34/260 (13%), Positives = 78/260 (30%), Gaps = 30/260 (11%)

Query: 132 DHSVHAFNVVTSEDFPSIFHDSK---PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANT 188
           D    +   +T   F  +    K    W++  YS  S+        WK +A  L G+ N 
Sbjct: 539 DLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINV 598

Query: 189 GMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF-EGELSVDAVTD 247
           G V   D         ++ +      +  P +  +P     +     +        ++  
Sbjct: 599 GSV---DCGQYHSFCTQENV------QRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRS 649

Query: 248 WFATAILKLPRIFYYTKESMGKNFLAKTGPHK--VKVIFFSK---TGERASPFVRQISRN 302
           W    + +       + +   + F  K    K    V F++      +  +P    ++R 
Sbjct: 650 WGLGFLPQA------SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARM 703

Query: 303 YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV---YYGSFNNSRLSEV 359
                    V   +           +++ P++   +    K  +      S +   ++ +
Sbjct: 704 IKGKVRAGKV-DCQAYPQT-CQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAAL 761

Query: 360 MEQNKLQELPQLRSVTSMEL 379
           +         Q++     EL
Sbjct: 762 IYGKLETLQSQVKRNKD-EL 780

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+KP +S  ++K+AY K + K+    N          F +I  AYE+L+D   ++ 
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA----EQFKQISQAYEVLSDEKKRQI 66

Query: 96  YDVYG 100
           YD  G
Sbjct: 67  YDQGG 71

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+ P ++ +++K+ Y K + K+     +G+       F +I  A+E+L DP  +  
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT----EKFKEISEAFEILNDPQKREI 66

Query: 96  YDVYG 100
           YD YG
Sbjct: 67  YDQYG 71

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 140 VVTSEDFPSIFHDS-KPWLIQVYSDGSYLCG---QFSGAWKTIAALLEGIANTGMVELGD 195
           ++ ++        S   W ++ ++     CG    F+  WK +A  ++       + L  
Sbjct: 16  LLDADSVRPTVLGSSSAWAVEFFASW---CGHAIAFAPTWKELANDVKD--WRPALNLAV 70

Query: 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILK 255
           +  A        + + F   G P++  F    K+    T      +V  +      A+  
Sbjct: 71  LDCAEE--TNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128

Query: 256 ----LPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAY--ASF 309
                P      + +   +       +K   +         S   R+++ +   Y   + 
Sbjct: 129 HRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFE-REDSYLGREVTLDLSQYHAVAV 187

Query: 310 AFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK 364
             VL  E +     N F V   P+   L   G    V     + S  +  +    
Sbjct: 188 RRVLNTESDL---VNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLP 239

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG++  +S E +K+AY K + +W    N   +  +   F  +  AYE+L+D   +  
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 96  YDVYG 100
           YD  G
Sbjct: 72  YDRAG 76

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ L +   +S + +K+AY + + +W    N   +  +   F ++  AYE+L+D   +  
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 96  YDVYG 100
           YD YG
Sbjct: 65  YDRYG 69

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   ++ + +K++Y K + K+    N      +   F +I  A+ +LTD   +  
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP-EAADKFKEINNAHAILTDATKRNI 78

Query: 96  YDVYGIDEQLHILEKVREQYGEESYSRI 123
           YD YG      +   V EQ+GEE+ +  
Sbjct: 79  YDKYG-----SLGLYVAEQFGEENVNTY 101

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD-----FLKIQYAYELLTD 89
            Y  LG  P +++  +K+ Y+K    +     S +    T +     F++I  A+++L +
Sbjct: 12  WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71

Query: 90  PLWKRNYDVYG 100
              KR YD+  
Sbjct: 72  EETKREYDLQR 82

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ L +   +S E +K+AY K + KW    N   +  +   F ++  AYE+L+D   +  
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 96  YDVYG 100
           YD YG
Sbjct: 72  YDRYG 76

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 40  YDALGI-KPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD--FLKIQYAYELLTDPLW 92
           YD L + +     +++ +AY   + K        +E    A+  F  I  AYE L D   
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 93  KRNYDVYGIDEQLHILEKVREQYGEESYSRIDL 125
           K NYD Y  D          + Y   +  ++DL
Sbjct: 78  KTNYDYYL-DHPDQRFYNYYQYYRLRAAPKVDL 109

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S E++K AY + + ++    N      +   F +I  AY++L+DP  +  
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG--AEEKFKEIAEAYDVLSDPRKREI 63

Query: 96  YDVYG 100
           +D YG
Sbjct: 64  FDRYG 68

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 34/258 (13%), Positives = 83/258 (32%), Gaps = 23/258 (8%)

Query: 124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE 183
           D P  D  D  +     V ++++ ++F   +   +  +             ++    +LE
Sbjct: 5   DFPEYDGVDRVI----NVNAKNYKNVFKKYEVLALLYHEPPEDDK-ASQRQFEMEELILE 59

Query: 184 GIANTGMVELGDIRLATHLAER-KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSV 242
             A   ++E   +      +E+   + +        S+  F         +  ++GE S 
Sbjct: 60  LAAQ--VLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED-----EVIEYDGEFSA 112

Query: 243 DAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRN 302
           D + ++    +     +    +E   + F       K+   F +K  E    F ++ +  
Sbjct: 113 DTLVEFLLDVLEDPVELIEGEREL--QAFENIEDEIKLIGYFKNKDSEHYKAF-KEAAEE 169

Query: 303 YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVME 361
           +  Y  F      +                 I F +    +PV       +   +   +E
Sbjct: 170 FHPYIPFFATFDSKVAKK------LTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVE 223

Query: 362 QNKLQELPQLRSVTSMEL 379
           +++   L +L+  +  E 
Sbjct: 224 EHRRSTLRKLKPESMYET 241

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+   ++  Q+K AY +    +    NSG    +   F +I  AY +L     +R 
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA-EAAERFTRISQAYVVLGSATLRRK 78

Query: 96  YDVYG 100
           YD   
Sbjct: 79  YDRGL 83

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTAD-----FLKIQYAYELLTDP 90
           Y  LG  P +++  +K+ Y+K    +     S +    T +     F++I  A+++L + 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 91  LWKRNYDVYG 100
             K+ YD+  
Sbjct: 79  ETKKKYDLQR 88

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG    SSVEQ+   ++  + +     +      +   F K+Q A E+LT+   +  
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDKHPENP-KAVETFQKLQKAKEILTNEESRAR 81

Query: 96  YDVYG 100
           YD + 
Sbjct: 82  YDHWR 86

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 28/242 (11%), Positives = 69/242 (28%), Gaps = 20/242 (8%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
            + +E+   I +++   L+  Y+D           ++  + +++            +  A
Sbjct: 9   SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNE----NQVVFA 64

Query: 200 THLAER-KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR 258
               ++   I Q +     P+L  F  G         + G+ SV A+ D+      K   
Sbjct: 65  RVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKRE---YRGQRSVKALADYIRQQ--KSDP 119

Query: 259 IFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEE 318
           I      +            +  + +F +          +++       +F        +
Sbjct: 120 IQEIRDLAEITTLDRS---KRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSK 176

Query: 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVMEQNKLQELPQLRSVTSM 377
                          I          +VY G+  N       ++   +  + ++      
Sbjct: 177 P------ERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGE 230

Query: 378 EL 379
           EL
Sbjct: 231 EL 232

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG+   +   ++++AY++ + K+    N G++  + A F +I+ AYE+LTD   +  
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 96  YDVYG 100
           YD YG
Sbjct: 65  YDQYG 69

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y+ LG+   +S E +K+AY + + K+    N      +T  F  I  AY +L++P  ++ 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG--ATEAFKAIGTAYAVLSNPEKRKQ 67

Query: 96  YDVYG 100
           YD +G
Sbjct: 68  YDQFG 72

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S   +K+AY+K + +W    N      +   F++I  AYE+L++   + N
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG--AEDRFIQISKAYEILSNEEKRTN 77

Query: 96  YDVYG 100
           YD YG
Sbjct: 78  YDHYG 82

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 40  YDALGIKP--YSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWK 93
            D LG++   + ++  +++AY K   ++       EE        K+   Y+ + D +  
Sbjct: 11  MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK-----MKKMNTLYKKMEDGVKY 65

Query: 94  RNYDVYGIDEQ 104
            +   +G    
Sbjct: 66  AHQPDFGGFWD 76

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           YD LG+   +S  Q+K+A+ K + K+    N   +  + A F +I  AYE L+D   ++ 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD--AEAKFREIAEAYETLSDANRRKE 67

Query: 96  YDVYG 100
           YD  G
Sbjct: 68  YDTLG 72

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
           Y  LG+   +S +++K+AY + + K+    N  +   +   F ++  AYE+L+D + ++ 
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP-KAKEKFSQLAEAYEVLSDEVKRKQ 68

Query: 96  YDVYG 100
           YD YG
Sbjct: 69  YDAYG 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 46/323 (14%), Positives = 82/323 (25%), Gaps = 97/323 (30%)

Query: 40  YDALGIKPYSSVEQ-VKEA----YEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +  L  K    V++ V+E     Y+   S   + +  PS    + I+    L  D     
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 95  NYDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDH-------SVHAFNVVTSEDFP 147
            Y+V  +   L + + + E         + +               +  A +V  S    
Sbjct: 128 KYNVSRLQPYLKLRQALLEL---RPAKNVLI-------DGVLGSGKTWVALDVCLSYKVQ 177

Query: 148 SIFHDSKPWL--IQVYSDGSY------LCGQFSGAWKTIAALLEGIANTGM-VELGDIRL 198
                   WL      S  +       L  Q    W    +  +  +N  + +      L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT---SRSDHSSNIKLRIHSIQAEL 234

Query: 199 ATHLAERKPIGQIFFRRGLPSLV-----------AFPPGCK--------------SSDCM 233
              L  +       +   L  LV           AF   CK              S+   
Sbjct: 235 RRLLKSKP------YENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 234 TRFEGELSVDAVTD---------WFATAILKLPRIFYYTKESMGKNFLAKTG-PHKVKVI 283
           T    +     +T          +       LPR                T  P ++ +I
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------------EVLTTNPRRLSII 333

Query: 284 FFSKTGERASPFVRQISRNYWAY 306
                 E     +     + W +
Sbjct: 334 -----AESIRDGLATW--DNWKH 349

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 23/234 (9%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
           V+   +F +   D    L++ Y+     C QF+  ++ IA +L+       + +  I   
Sbjct: 19  VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPP--IPVAKIDAT 76

Query: 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR- 258
           +       +   F   G P++     G ++ D    +EG  + + +              
Sbjct: 77  SA----SVLASRFDVSGYPTIKILKKG-QAVD----YEGSRTQEEIVAKVREVSQPDWTP 127

Query: 259 IFYYTKESMGKNFLAKTGPHKVKVIFFSKTG----ERASPFVRQISRNYWAYAS---FAF 311
               T     +NF        + ++ F        ++ +P   + ++     +     A 
Sbjct: 128 PPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAK 187

Query: 312 VLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365
           V    E        F+V   P +   +  G +P  Y G      + + M +   
Sbjct: 188 VDATAETDLA--KRFDVSGYPTLKIFRK-G-RPYDYNGPREKYGIVDYMIEQSG 237

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +D LG+KP +S ++V +AY K +              S   F  +  A   L   +   
Sbjct: 29 SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG--SEDAFKAVVNARTALLKNIKSG 86

Query: 95 NYD 97
             
Sbjct: 87 PSS 89

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 30  VLPRSFPPSHYDALGIKP--YSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYA 83
           VL R       D LG++   + ++  +++AY K   ++       EE        K+   
Sbjct: 4   VLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK-----MKKMNTL 58

Query: 84  YELLTDPLWKRNYDVYG 100
           Y+ + D +   +   +G
Sbjct: 59  YKKMEDGVKYAHQPDFG 75

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 30/234 (12%), Positives = 65/234 (27%), Gaps = 23/234 (9%)

Query: 140 VVTSEDFPSIFHDS-KPWLIQVYSDGSYLCG---QFSGAWKTIAALLEGIANTGMVELGD 195
           ++ ++        S   W ++ ++     CG    F+  W  +A  ++       + L  
Sbjct: 16  LLQADTVRGAVLGSRSAWAVEFFAS---WCGHCIAFAPTWXALAEDVKAWRPA--LYLAA 70

Query: 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILK 255
           +  A        + + F   G P++  F     +            V  + +    A+  
Sbjct: 71  LDCAEE--TNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128

Query: 256 LPRIFYYTKES-------MGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYAS 308
               +                 F A+     + +IF       A      +  +     +
Sbjct: 129 HHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVA--LDLSQHKGVA 186

Query: 309 FAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362
              VL  E         F V   P+   L   G    V     + S  +  +++
Sbjct: 187 VRRVLNTEANVV---RKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQR 237

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 31/234 (13%)

Query: 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA 199
            + ++ F          L + ++     C   +  +   A  L            +I LA
Sbjct: 18  KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---------KNITLA 68

Query: 200 THLAER-KPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR 258
                  + +       G PSL  F     ++     +EG  + +A+  +          
Sbjct: 69  QIDCTENQDLCMEHNIPGFPSLKIFKNSDVNN--SIDYEGPRTAEAIVQFMIKQSQ---- 122

Query: 259 IFYYTKESMGKNFLAKTGPHKVKVIFFSKT-GERASPFVRQISRNYWAYASFAFVLWREE 317
                  +    +LA        ++   K   +  + F             ++       
Sbjct: 123 -PAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATF-------------YSMANKHFN 168

Query: 318 ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQL 371
           +          +     ++L     +PVVY G   +   ++V E+    E    
Sbjct: 169 DYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPY 222

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 23  GLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN----SGEEIPSTAD-- 76
           GL     +L +S    +Y  LG+K  +  +++ +AY K + +W+      EE    A+  
Sbjct: 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKK 427

Query: 77  FLKIQYAYELLTDPLWKRNYD 97
           F+ I  A E+L+DP  ++ +D
Sbjct: 428 FIDIAAAKEVLSDPEMRKKFD 448

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 9/66 (13%)

Query: 40  YDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
              +         + K+   +   KW    N      +   F  +Q     L     K+ 
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE----KQA 74

Query: 96  -YDVYG 100
             D   
Sbjct: 75  FLDQNA 80

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 11/81 (13%)

Query: 30  VLPRSFPPSHYDALGIKP--YSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYA 83
           VL R+      + L +    +    ++++AY++ S   +     P    S A   ++   
Sbjct: 4   VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLH-----PDKGGSHALMQELNSL 58

Query: 84  YELLTDPLWKRNYDVYGIDEQ 104
           +      ++    ++ G   Q
Sbjct: 59  WGTFKTEVYNLRMNLGGTGFQ 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	100.0
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.98
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.97
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.97
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.96
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.95
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.94
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.9
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.9
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.86
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.83
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.83
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.83
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.79
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.78
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.77
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.77
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.77
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.77
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.76
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.76
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.75
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.75
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.75
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.75
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.74
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.74
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.74
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.74
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.74
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.73
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.73
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.73
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.73
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.73
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.72
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.72
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.72
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.72
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.72
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.72
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.72
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.72
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.72
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.72
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.71
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.71
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.71
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.71
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.71
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.71
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.71
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.71
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.71
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.71
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.7
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.7
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.7
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.7
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.7
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.7
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.7
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.7
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.7
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.69
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.69
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.68
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.68
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.68
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.68
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.67
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.67
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.67
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.67
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.67
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.66
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.66
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.66
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.66
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.66
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.66
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.66
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.66
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.65
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.65
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.65
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.64
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.64
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.64
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.63
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.63
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.63
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.63
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.62
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.62
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.62
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.62
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.62
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.62
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.61
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.61
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.61
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.61
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.4
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.6
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.59
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.59
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.57
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.57
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.57
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.56
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.56
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.56
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.56
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.56
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.55
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.55
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.55
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.54
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.54
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.53
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.53
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.53
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.53
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.51
2guz_A	71	Mitochondrial import inner membrane translocase su	99.5
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.5
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.5
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.49
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.48
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.48
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.47
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.47
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.47
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.46
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.46
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.46
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.46
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.44
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.44
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.41
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.4
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.39
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.38
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.36
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.04
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.33
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.32
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.31
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.3
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.28
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.27
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.24
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.23
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.22
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.19
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.16
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.12
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.1
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.1
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.09
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.08
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.07
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.06
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.06
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.04
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.03
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.03
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.02
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.02
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.01
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.99
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.96
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.94
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.94
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.93
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.92
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.92
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.91
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.91
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.9
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.89
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.89
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.88
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.86
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.85
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.84
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.83
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.82
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.81
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.81
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.77
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.74
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.72
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.71
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.71
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.71
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.7
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.69
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.69
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.64
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.63
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.58
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.57
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.56
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.97
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.54
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.54
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.53
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.53
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.53
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.53
2guz_B	65	Mitochondrial import inner membrane translocase su	98.52
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.52
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.48
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.46
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.45
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.79
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.39
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.38
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.37
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.35
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.35
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.33
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.31
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.3
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.29
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.29
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.27
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.24
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.24
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.23
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.23
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.2
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.19
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.17
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.16
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.13
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.12
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.11
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.1
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.06
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.05
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.03
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.03
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.02
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.01
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.01
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.0
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.0
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.98
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.91
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.91
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	97.89
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.88
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.88
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	97.86
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.85
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.83
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.8
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.8
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.78
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.76
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.75
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.68
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.67
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.63
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	97.63
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.62
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	97.59
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.58
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.58
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.56
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.56
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	97.55
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.54
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	97.54
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	97.54
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.53
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.53
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	97.53
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.52
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.51
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	97.51
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.51
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.5
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.5
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.5
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.47
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	97.46
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.44
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	97.44
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	97.43
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.42
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.42
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.42
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.41
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.4
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.39
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.38
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.38
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	97.37
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	97.37
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.36
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	97.36
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	97.35
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.34
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.33
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	97.33
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.32
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	97.32
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.31
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.31
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	97.31
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	97.31
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.3
3me7_A	170	Putative uncharacterized protein; electron transfe	97.3
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.29
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.29
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.28
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.27
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	97.26
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.24
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.23
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.23
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.22
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.19
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.19
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.17
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	97.17
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.15
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	97.15
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.14
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.13
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	97.13
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	97.12
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	97.12
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	97.11
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.09
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.08
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.08
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	97.08
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.07
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.06
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	97.05
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.03
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	97.03
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	97.03
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.03
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.0
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	96.99
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.99
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.98
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	96.95
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	96.94
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	96.86
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	96.86
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.85
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.84
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	96.83
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	96.82
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	96.81
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	96.8
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	96.79
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.76
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	96.72
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.72
2kuc_A	130	Putative disulphide-isomerase; structural genomics	96.71
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	96.7
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	96.68
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.67
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	96.65
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	96.63
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	96.62
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	96.62
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	96.61
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	96.6
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.59
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.58
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	96.56
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.54
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.51
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	96.49
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	95.47
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.44
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.42
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.41
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	96.37
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.36
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	96.35
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	96.33
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	96.33
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.15
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	96.15
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.06
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	95.94
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	95.83
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	95.76
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	94.69
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	95.65
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	95.54
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	95.53
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	95.52
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	95.51
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	95.47
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	95.41
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	95.19
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	95.05
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	95.03
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	94.71
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	94.66
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	94.59
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	94.35
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	94.09
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	94.05
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	93.95
4evm_A	138	Thioredoxin family protein; structural genomics, n	93.91
3raz_A	151	Thioredoxin-related protein; structural genomics,	93.74
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	93.61
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	93.33
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	93.27
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	93.08
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	92.73
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	92.41
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	92.39
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	92.3
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	92.17
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	92.1
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	91.81
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	91.69
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	91.5
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	91.42
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	91.06
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	90.63
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	90.58
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	90.15
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	90.03
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	89.72
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	89.59
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	88.78
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	88.74
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	88.71
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	88.66
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	88.52
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	88.19
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	87.73
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	87.6
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	87.56
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	87.51
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	87.4
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	87.22
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	86.83
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	86.76
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	86.75
1ttz_A	87	Conserved hypothetical protein; structural genomic	86.44
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	85.43
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	85.36
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	85.06
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	84.81
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	84.55
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	83.71
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	83.4
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	83.33
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	82.88
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	82.28
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	81.85
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	81.73
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	81.6
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	81.16
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	80.96
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	80.8
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	80.14
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	80.03

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=1e-45  Score=402.99  Aligned_cols=342  Identities=19%  Similarity=0.316  Sum_probs=224.6

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhhhhhhh
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEK  110 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~  110 (423)
                      ....|||++|||+++|+.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||++|+.+.....  
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~~--   95 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ--   95 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----------
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccCC--
Confidence            44689999999999999999999999999999999985   3577899999999999999999999999987654332  


Q ss_pred             hhhccCcccccccCCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEE
Q 014549          111 VREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGM  190 (423)
Q Consensus       111 ~~~~~~~~~f~~~~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~  190 (423)
                       ++++..+.|++..|++|+++    +.|++||.++|++.++++++|+|+||||||++|+++.|.|+++|+.+++.+.+++
T Consensus        96 -~~~~~~~~~~~~~fg~~~~~----~~v~~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~  170 (780)
T 3apo_A           96 -GGQYESWSYYRYDFGIYDDD----PEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGA  170 (780)
T ss_dssp             ---------CCSSSSSTTTTC----TTEEECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEE
T ss_pred             -CCCcccccccchhhcccCCC----cceeeechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEE
Confidence             45677777777778888765    3489999999999999999999999999999999999999999999998899999


Q ss_pred             EEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCc-eeecccc---h
Q 014549          191 VELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPR-IFYYTKE---S  266 (423)
Q Consensus       191 Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~-~~~it~~---~  266 (423)
                      |||+++   ..+|++++      |+++||+++|++|..    ...|.|.++.+.|++|+.+.   ++. ...+++.   +
T Consensus       171 vd~~~~---~~l~~~~~------v~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~---~~~~~~~i~~~~~~~  234 (780)
T 3apo_A          171 VNCGDD---RMLCRMKG------VNSYPSLFIFRSGMA----AVKYNGDRSKESLVAFAMQH---VRSTVTELSTGNFVN  234 (780)
T ss_dssp             EETTTC---SSCC--------------CEEEEECTTSC----CEECCSCSCHHHHHHHHHTT---SCCCEEECCHHHHHH
T ss_pred             EeCCCc---HHHHHHcC------CceeeeEEEEeCCcE----eeEecCCCCHHHHHHHHHHh---chhhheeccchhhHH
Confidence            999954   45999999      999999999999875    46899999999999999988   333 3335544   3


Q ss_pred             hhhhhhhhcCCCceEEEEEecCC-CCCc-hHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCC----
Q 014549          267 MGKNFLAKTGPHKVKVIFFSKTG-ERAS-PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP----  340 (423)
Q Consensus       267 ~~~~fl~~~~~~~~~vl~f~~~~-~~~~-~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~----  340 (423)
                      .+..++..   +.+.|++|.+.. +++. ..++.++..|++.+.|+.+.-..  ...+++++|+++.| +++|+++    
T Consensus       235 ~l~~~~~~---~~~~vi~f~~~~~~~~~~~~~~~l~~~f~~~~~f~~v~c~~--~~~l~~~~gi~~~p-~~~f~~~~~~~  308 (780)
T 3apo_A          235 AIETAFAA---GVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDA--QDSLCKSLDTTAST-TAYFPPGATLN  308 (780)
T ss_dssp             HHHHHHHH---TCEEEEEEECTTSCCCCHHHHHHHHHHTTTTEEEEEEETTT--SHHHHTCC-----C-EEEECTTCCSS
T ss_pred             HHHhhhcc---CCCEEEEEecCcccccCHHHHHHHHHHhhccceEEEEEcCC--CHHHHHHhCCCCCc-eeeeccccccC
Confidence            35566644   336666655432 2333 44566888888888888885322  25799999999877 6667652    


Q ss_pred             --CcceeEecCCCChhHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEEccC-----ChhhHHHH
Q 014549          341 --GVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-----SPELNKMR  413 (423)
Q Consensus       341 --~~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~~-----~~~~~~~~  413 (423)
                        +..++.|.|.++..+|..||.. .+|.+.+++..+..... ..       +    +++|++....     ..++.++.
T Consensus       309 ~~~~~~~~y~g~~~~~~i~~~i~~-~~p~v~~it~~~f~~~~-~~-------~----~~lv~F~~~~~~~~~~~~~~~~A  375 (780)
T 3apo_A          309 DREKSSVLFLNSLDAKEIYMEIIH-NLPDFELLSANQLEDRL-AH-------H----RWLVFFHFGKNENANDPELKKLK  375 (780)
T ss_dssp             TTTGGGSEEECCCCHHHHHHHHHH-HSCCCCEECHHHHHHHH-TT-------S----EEEEEEECC-----CCGGGGGHH
T ss_pred             CCcccceeccccccHHHHHHHHHH-hCCCcccCCHHHHHHHh-cc-------C----CeEEEEecCCccccchHHHHHHH
Confidence              3456788999999999999995 77888888776554321 11       1    4766665322     23566666


Q ss_pred             HHHh
Q 014549          414 EVSI  417 (423)
Q Consensus       414 ~~~~  417 (423)
                      +.++
T Consensus       376 ~~~~  379 (780)
T 3apo_A          376 TLLK  379 (780)
T ss_dssp             HHHG
T ss_pred             Hhhc
Confidence            6664

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=300.20  Aligned_cols=197  Identities=25%  Similarity=0.480  Sum_probs=171.6

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhhhhhhhhhh
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVRE  113 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~~~~  113 (423)
                      .|||++|||+++|+.++||+|||++++++|||+++   .+.++|++|++||++|+||.+|+.||.+|+.+....   .++
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~---~~~   78 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN---QGG   78 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT---CSC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccc---ccc
Confidence            58999999999999999999999999999999986   467889999999999999999999999998764422   134


Q ss_pred             ccCcccccccCCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549          114 QYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (423)
Q Consensus       114 ~~~~~~f~~~~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc  193 (423)
                      ++..+.|.+..|++|+..    ..|..|+.++|+..+.++++++|.||++||++|+.+.|.|+++++.+.+.+.|+.|||
T Consensus        79 ~~~~~~~~~~~fg~~~~~----~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~  154 (210)
T 3apq_A           79 QYESWSYYRYDFGIYDDD----PEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNC  154 (210)
T ss_dssp             CCCCHHHHHHSSSTTTTC----TTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEET
T ss_pred             cccccccccccccccCCC----CceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEEC
Confidence            455555555567777554    3478899999999998899999999999999999999999999999988899999999


Q ss_pred             ccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          194 GDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       194 ~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                      +   ....+|++++      |.++||+++|++|..    ...|.|.++.+.|.+|+.+.+
T Consensus       155 ~---~~~~l~~~~~------v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~l  201 (210)
T 3apq_A          155 G---DDRMLCRMKG------VNSYPSLFIFRSGMA----AVKYNGDRSKESLVAFAMQHV  201 (210)
T ss_dssp             T---TCHHHHHHTT------CCSSSEEEEECTTSC----CEECCSCCCHHHHHHHHHHHH
T ss_pred             C---ccHHHHHHcC------CCcCCeEEEEECCCc----eeEecCCCCHHHHHHHHHHhC
Confidence            9   4456999999      999999999988865    467899999999999999873

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=5.4e-33  Score=277.16  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=201.3

Q ss_pred             CCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCcccc---ccH---HHHHHHHHHhhcc-ceEEEEEcccc
Q 014549          124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCG---QFS---GAWKTIAALLEGI-ANTGMVELGDI  196 (423)
Q Consensus       124 ~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~---~~~---p~~~~~A~~l~~~-~~~~~Vdc~~~  196 (423)
                      ++|.|++.    +.|++||.+||+++|+++++|+|+||||||+||+   +++   |.|+++|+.+++. +.|++|||+  
T Consensus         5 ~~p~~~~~----~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~--   78 (367)
T 3us3_A            5 DFPEYDGV----DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE--   78 (367)
T ss_dssp             CCCCCCCC----CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETT--
T ss_pred             CCCCCCCC----CccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCc--
Confidence            35555544    4589999999999998899999999999999973   233   7999999999875 899999999  


Q ss_pred             hhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcC
Q 014549          197 RLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTG  276 (423)
Q Consensus       197 ~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~  276 (423)
                       .+..||++++      |+++||+++|++|..     ..|.|.++.+.|++|+.+.+  .|....+++.+.++.|+... 
T Consensus        79 -~~~~l~~~~~------V~~~PTl~~f~~G~~-----~~y~G~~~~~~i~~~i~~~~--~~~v~~i~~~~~~~~~~~~~-  143 (367)
T 3us3_A           79 -KDAAVAKKLG------LTEEDSIYVFKEDEV-----IEYDGEFSADTLVEFLLDVL--EDPVELIEGERELQAFENIE-  143 (367)
T ss_dssp             -TTHHHHHHHT------CCSTTEEEEEETTEE-----EECCSCCSHHHHHHHHHHHH--SCSEEECCSHHHHHHHHHCC-
T ss_pred             -ccHHHHHHcC------CCcCceEEEEECCcE-----EEeCCCCCHHHHHHHHHHhc--CCCcEEcCCHHHHHHHhccC-
Confidence             5566999999      999999999998854     48999999999999999883  34554566555577887621 


Q ss_pred             CCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-CChhH
Q 014549          277 PHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSR  355 (423)
Q Consensus       277 ~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~~~~  355 (423)
                      ...++|+||.+.+....+.+..+|..+++.+.|+.+.     ...++++|+++ .|+|++|++++..++.|.|. ++.+.
T Consensus       144 ~~~~vv~ff~~~~~~~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~v~-~p~i~lf~~~~~~~~~y~g~~~~~~~  217 (367)
T 3us3_A          144 DEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEE  217 (367)
T ss_dssp             SSCEEEEECSCTTCHHHHHHHHHHHHHTTTSCEEEEC-----CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHH
T ss_pred             CCcEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEC-----CHHHHHHcCCC-CCeEEEEcCCCCCCeecCCCCCCHHH
Confidence            2346677776544334566788999998889998874     35689999998 49999999988888999995 89999


Q ss_pred             HHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEEccCChhhHHHHHHHhh
Q 014549          356 LSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMREVSIS  418 (423)
Q Consensus       356 l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~~~~~~~~~~~~~~~  418 (423)
                      |.+||+.+.+|++++++..+...+.+..     ..+    ++|++++....++.+++.+.|+.
T Consensus       218 l~~fi~~~~~p~v~elt~~~~~~~~~~~-----~~~----~~~~~f~~~~~~~~~~~~~~l~~  271 (367)
T 3us3_A          218 IVNFVEEHRRSTLRKLKPESMYETWEDD-----MDG----IHIVAFAEEADPDGYEFLEILKS  271 (367)
T ss_dssp             HHHHHHHTCSCSEEECCGGGHHHHHHSC-----BTT----EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccceeecChhhHHHHHhhc-----cCC----cEEEEEEcCCChhHHHHHHHHHH
Confidence            9999999999999999999987765322     111    46666655444445555555544

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.98  E-value=1.1e-31  Score=265.81  Aligned_cols=256  Identities=13%  Similarity=0.154  Sum_probs=200.5

Q ss_pred             CCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHH-------HHHHHHHhhcc-ceEEEEEccc
Q 014549          124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGA-------WKTIAALLEGI-ANTGMVELGD  195 (423)
Q Consensus       124 ~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~-------~~~~A~~l~~~-~~~~~Vdc~~  195 (423)
                      ++|.|++.    +.|++||.+||++.+.++++|+|+||||||+ |++++|.       |+++|+.+++. +.+++|||+ 
T Consensus         3 ~~p~~~~~----~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~-   76 (350)
T 1sji_A            3 NFPTYDGK----DRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAK-   76 (350)
T ss_dssp             SSCCCCCC----CCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETT-
T ss_pred             CCCCCCCC----CccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCC-
Confidence            34555443    4589999999999998899999999999999 9999999       99999999885 899999999 


Q ss_pred             chhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhh-h
Q 014549          196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLA-K  274 (423)
Q Consensus       196 ~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~-~  274 (423)
                        ....+|++++      |+++||+++|++|..     ..|.|.++.++|++|+.+.+  .|....+++.+.++.|+. +
T Consensus        77 --~~~~l~~~~~------v~~~Pt~~~~~~g~~-----~~~~G~~~~~~l~~~i~~~~--~~~~~~l~~~~~~~~~~~~~  141 (350)
T 1sji_A           77 --KEAKLAKKLG------FDEEGSLYVLKGDRT-----IEFDGEFAADVLVEFLLDLI--EDPVEIINSKLEVQAFERIE  141 (350)
T ss_dssp             --TTHHHHHHHT------CCSTTEEEEEETTEE-----EEECSCCCHHHHHHHHHTTS--SCSEEECCSHHHHHHHHHCC
T ss_pred             --CCHHHHHhcC------CCccceEEEEECCcE-----EEecCCCCHHHHHHHHHHhc--CCcceeccchHHHHHHhccC
Confidence              5566999999      999999999998863     48999999999999999872  344444665555677775 3


Q ss_pred             cCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-CCh
Q 014549          275 TGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNN  353 (423)
Q Consensus       275 ~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~~  353 (423)
                      .  ..++|+||.+.+....+.+..+|..+++.+.|+.+.     .+.++++|+++ .|+|++|++.+..++.|.|. ++.
T Consensus       142 ~--~~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f~~~~-----~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~  213 (350)
T 1sji_A          142 D--QIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATF-----DKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTE  213 (350)
T ss_dssp             S--SCEEEEECSCTTSHHHHHHHHHHHHTTTTSEEEEEC-----CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCH
T ss_pred             C--CcEEEEEECCCCcHHHHHHHHHHHhhccCcEEEEEC-----CHHHHHHcCCC-CCcEEEEeCCCCCceecCCCCCCH
Confidence            3  236666776543333566778899998889998873     35699999998 99999999887888999997 899


Q ss_pred             hHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEEcc-CChhhHHHHHHHhh
Q 014549          354 SRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMREVSIS  418 (423)
Q Consensus       354 ~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~-~~~~~~~~~~~~~~  418 (423)
                      ++|.+||+.+..|.+++++..+...+ |.. +   ..     ++|+|++.. ...+..++++.+++
T Consensus       214 ~~l~~fi~~~~~p~v~elt~~~~~~~-~~~-~---~~-----~~~~l~f~~~~~~~~~~~~~~~~~  269 (350)
T 1sji_A          214 EELVEFVKEHQRPTLRRLRPEDMFET-WED-D---LN-----GIHIVAFAERSDPDGYEFLEILKQ  269 (350)
T ss_dssp             HHHHHHHHHHCCCSEEECCTTTHHHH-HHS-C---SS-----SEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccchhhcChhhHHHH-hcC-C---CC-----CcEEEEEEcCCCccHHHHHHHHHH
Confidence            99999999999999999999998775 322 1   11     377776653 23333455555544

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.9e-30  Score=258.68  Aligned_cols=249  Identities=12%  Similarity=0.145  Sum_probs=174.6

Q ss_pred             CcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhh------ccceEEEEEcccchhhhHHHhhCC
Q 014549          134 SVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE------GIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       134 ~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~------~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ..+.|++||.++|++++.++++|+|+||||||+||+++.|.|+++|+.++      +.+.+++|||+   ....+|++++
T Consensus         3 ~~~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~---~~~~l~~~~~   79 (382)
T 2r2j_A            3 LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD---QHSDIAQRYR   79 (382)
T ss_dssp             -----CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETT---TCHHHHHHTT
T ss_pred             CCCceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECC---ccHHHHHhcC
Confidence            34568999999999988888999999999999999999999999999994      45899999999   4566999999


Q ss_pred             CCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEec
Q 014549          208 IGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK  287 (423)
Q Consensus       208 ~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~  287 (423)
                            |+++||+++|++|...   ...|.|.++.+.|++|+.+.+.  |....+++.+.++. +..  ...++|+||.+
T Consensus        80 ------v~~~Pt~~~f~~G~~~---~~~~~G~~~~~~l~~~i~~~~~--~~v~~l~~~~~l~~-l~~--~~~~~v~ff~~  145 (382)
T 2r2j_A           80 ------ISKYPTLKLFRNGMMM---KREYRGQRSVKALADYIRQQKS--DPIQEIRDLAEITT-LDR--SKRNIIGYFEQ  145 (382)
T ss_dssp             ------CCEESEEEEEETTEEE---EEECCSCCSHHHHHHHHHHHHS--CCCEEC---------------CCEEEEEESC
T ss_pred             ------CCcCCEEEEEeCCcEe---eeeecCcchHHHHHHHHHHhcc--CCceecCCHHHHHH-hcC--CCCEEEEEECC
Confidence                  9999999999988652   2259999999999999998842  33333544332444 322  23367777764


Q ss_pred             CCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCC-CcceeEecCCC-ChhHHHHHHHhhcc
Q 014549          288 TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSF-NNSRLSEVMEQNKL  365 (423)
Q Consensus       288 ~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~-~~~~~~y~g~~-~~~~l~~fi~~~~~  365 (423)
                      ........+..+|..+++.+.|+.+..      ++++++++++.| +++++.+ ...+..|.|.+ +.+.|.+||+.+.+
T Consensus       146 ~~~~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  218 (382)
T 2r2j_A          146 KDSDNYRVFERVANILHDDCAFLSAFG------DVSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV  218 (382)
T ss_dssp             SSSHHHHHHHHHHHHHTTTCEEEEEES------CC--------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS
T ss_pred             CCChhHHHHHHHHHHhhccceEEEEeh------hhHHhhCCCCCc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhccc
Confidence            322123356778888888888887752      267788998888 5555432 34568899998 89999999999999


Q ss_pred             ccCcccccccccccCCCCCCccCCCCCCcceEEEEEEccCC-hhhHHHHHHHh
Q 014549          366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLS-PELNKMREVSI  417 (423)
Q Consensus       366 ~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~~~-~~~~~~~~~~~  417 (423)
                      |.+++++..+...+.|.. .          ++|++++.+.. ...+.+++.++
T Consensus       219 p~v~elt~~~~~~~~~~~-~----------~~~v~f~~~~~~~~~~~~~~~~~  260 (382)
T 2r2j_A          219 PLVREITFENGEELTEEG-L----------PFLILFHMKEDTESLEIFQNEVA  260 (382)
T ss_dssp             CSSEECCHHHHHHHHTTC-C----------CEEEEEECTTCCHHHHHHHHHHH
T ss_pred             CceEecChhhHHHHhcCC-C----------cEEEEEecCCchHHHHHHHHHHH
Confidence            999999999998887644 1          59988886543 23344444443

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.97  E-value=1.7e-29  Score=260.17  Aligned_cols=221  Identities=16%  Similarity=0.231  Sum_probs=183.2

Q ss_pred             eeeEeccCCcccccCCC---CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTSEDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~---~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|++||.++|++.+.++   ++|+|.||||||++|+++.|.|+++|+.+++.+.+++|||+   ....+|++++      
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~---~~~~l~~~~~------   72 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCT---ANTNTCNKYG------   72 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETT---TCHHHHHHTT------
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECC---CCHHHHHhcC------
Confidence            47999999999999766   99999999999999999999999999999999999999999   5566999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCc
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS  293 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~  293 (423)
                      |+++||+++|++|+.    +..|.|.++.+.|++|+.+.+  .|....+++.+.++.|++..  ..++|+||.+.+....
T Consensus        73 v~~~Ptl~~~~~g~~----~~~~~G~~~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~  144 (481)
T 3f8u_A           73 VSGYPTLKIFRDGEE----AGAYDGPRTADGIVSHLKKQA--GPASVPLRTEEEFKKFISDK--DASIVGFFDDSFSEAH  144 (481)
T ss_dssp             CCEESEEEEEETTEE----EEECCSCSSHHHHHHHHHHHT--SCSEEEECSHHHHHHHTTSS--SCEEEEEESCTTCHHH
T ss_pred             CCCCCEEEEEeCCce----eeeecCccCHHHHHHHHHhhc--ccCceecCCHHHHHHHHhcC--CcEEEEEECCCccchH
Confidence            999999999999864    468999999999999999882  34444465555567777643  2345557765444445


Q ss_pred             hHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEec------CCCcceeEec-CCCChhHHHHHHHhhccc
Q 014549          294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK------DPGVKPVVYY-GSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk------~~~~~~~~y~-g~~~~~~l~~fi~~~~~~  366 (423)
                      ..+..+|..+++.+.|+.+.     +..++++|+++.. .|++|+      ..+..++.|. |.++.+.|.+||..+.+|
T Consensus       145 ~~f~~~a~~~~~~~~F~~~~-----~~~~~~~~~v~~~-~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p  218 (481)
T 3f8u_A          145 SEFLKAASNLRDNYRFAHTN-----VESLVNEYDDNGE-GIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFG  218 (481)
T ss_dssp             HHHHHHHHHHTTTSCEEEEC-----CHHHHHHHCSSSE-EEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhccCceEEEEC-----CHHHHHHhCCCCC-cEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCC
Confidence            66777898998899998863     4568999999864 488888      4566778898 888999999999999999


Q ss_pred             cCcccccccccccC
Q 014549          367 ELPQLRSVTSMELG  380 (423)
Q Consensus       367 ~lp~l~~~~~~~~~  380 (423)
                      ++++++..+...+.
T Consensus       219 ~v~e~t~~n~~~~~  232 (481)
T 3f8u_A          219 ICPHMTEDNKDLIQ  232 (481)
T ss_dssp             TSCEECTTTHHHHT
T ss_pred             CccccChhHHHHhc
Confidence            99999999987764

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.5e-29  Score=241.82  Aligned_cols=231  Identities=16%  Similarity=0.253  Sum_probs=184.2

Q ss_pred             CCcceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          133 HSVHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       133 ~~~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      +..+.|++||.++|++.| +++++++|.||||||++|+++.|.|+++|+.+.+.+.|+.|||+... ...+|++++    
T Consensus        14 ~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~-~~~l~~~~~----   88 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK-NKALCAKYD----   88 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT-THHHHHHTT----
T ss_pred             CCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCcc-CHHHHHhCC----
Confidence            345568999999999998 67889999999999999999999999999999988999999998432 466999999    


Q ss_pred             ccccCccEEEEeCCCCCC-------------CCCcccccCCCCHHHHHHHHHHhhccCCc-eeecccchhhhhhhhhcCC
Q 014549          212 FFRRGLPSLVAFPPGCKS-------------SDCMTRFEGELSVDAVTDWFATAILKLPR-IFYYTKESMGKNFLAKTGP  277 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~-------------~~~~~~y~G~~~~~~l~~fi~~~~~~~p~-~~~it~~~~~~~fl~~~~~  277 (423)
                        |.++||+++|.+|+..             ...+..|.|.++.+.|++|+.+.   ++. ...+++.+.++.|+...  
T Consensus        89 --I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~---~~~~v~~i~~~~~l~~~l~~~--  161 (298)
T 3ed3_A           89 --VNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR---IRSYVKKFVRIDTLGSLLRKS--  161 (298)
T ss_dssp             --CCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTT---CCCCEEECSCGGGHHHHHTSC--
T ss_pred             --CCccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHh---cccccEEcCCHHHHHHHHhcC--
Confidence              9999999999998610             01246899999999999999988   433 33355544477888653  


Q ss_pred             CceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHH--hhcC-----C-------------CCCCeEEEe
Q 014549          278 HKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWW--NTFE-----V-------------ESAPAIVFL  337 (423)
Q Consensus       278 ~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~--~~f~-----v-------------~~~Ptl~lf  337 (423)
                      +.+.|++|++.. ...+.++.+|..|++.+.|+.+...+..  .+.  ++|+     |             ...|+|++|
T Consensus       162 ~~~~vi~fs~~~-~~~~~f~~~A~~~~~~~~F~~v~~~~~a--~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~  238 (298)
T 3ed3_A          162 PKLSVVLFSKQD-KISPVYKSIALDWLGKFDFYSISNKKLK--QLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVF  238 (298)
T ss_dssp             SSEEEEEEESSS-SCCHHHHHHHHHTBTTEEEEEEEGGGCC--CCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred             CceEEEEEcCCC-cchHHHHHHHHHhhcCcEEEEEcchHhh--hhhhhhhhcccCcchhhhhhcccccccccCCCeEEEE
Confidence            458888887543 4578899999999999999998743221  111  2333     2             568999999


Q ss_pred             cCCCcceeEecC-CCChhHHHHHHH--hhccccCcccccccccc
Q 014549          338 KDPGVKPVVYYG-SFNNSRLSEVME--QNKLQELPQLRSVTSME  378 (423)
Q Consensus       338 k~~~~~~~~y~g-~~~~~~l~~fi~--~~~~~~lp~l~~~~~~~  378 (423)
                      +..+.+++.|.| .++.++|.+||.  .+..|..++++..+.+.
T Consensus       239 ~~~~~~~~~y~g~~~~~~~i~~fi~~~~~~~p~~~~ls~~~~~~  282 (298)
T 3ed3_A          239 DADKDKFWEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYI  282 (298)
T ss_dssp             ETTTTEEEECCCSSCCHHHHHHHHHHHHTCCCSSSTTSHHHHHH
T ss_pred             cCCCCceEEeccccCCHHHHHHHHHhhcCCCCCcCCCchHHHHH
Confidence            998899999995 689999999999  78899999999877554

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.95  E-value=4.3e-28  Score=251.32  Aligned_cols=218  Identities=13%  Similarity=0.152  Sum_probs=178.9

Q ss_pred             cceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .+.|++||.++|++.+.++++|+|+||||||+||+++.|.|+++|+.+++. +.|++|||+   ....+|++++      
T Consensus        13 ~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~---~~~~l~~~~~------   83 (504)
T 2b5e_A           13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT---ENQDLCMEHN------   83 (504)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT---TCHHHHHHTT------
T ss_pred             CCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECC---CCHHHHHhcC------
Confidence            345899999999999999999999999999999999999999999999986 999999999   4566999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCc
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS  293 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~  293 (423)
                      |+++||+++|++|...  ....|.|.++.+.|++|+.+.+  .|....+++   ++.|+.......++|++|.+......
T Consensus        84 v~~~Pt~~~~~~g~~~--~~~~~~G~~~~~~l~~~l~~~~--~~~v~~i~~---~~~~~~~~~~~~~~v~~f~~~~~~~~  156 (504)
T 2b5e_A           84 IPGFPSLKIFKNSDVN--NSIDYEGPRTAEAIVQFMIKQS--QPAVAVVAD---LPAYLANETFVTPVIVQSGKIDADFN  156 (504)
T ss_dssp             CCSSSEEEEEETTCTT--CEEECCSCCSHHHHHHHHHHHT--SCSEEECSC---HHHHHHHSCCSSCEEEEEESCCHHHH
T ss_pred             CCcCCEEEEEeCCccc--cceeecCCCCHHHHHHHHHHhc--CCcceeHHH---HHHHHhcCCCceEEEEEeCCCCchHH
Confidence            9999999999998631  1458999999999999999983  233333555   67777653222577888875333345


Q ss_pred             hHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-C---ChhHHHHHHHhhccccCc
Q 014549          294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-F---NNSRLSEVMEQNKLQELP  369 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-~---~~~~l~~fi~~~~~~~lp  369 (423)
                      ..+..+|..+++.+.|+.+.       +++++++++    +++|++.+ .++.|.|. +   +.+.|.+||..+.+|.++
T Consensus       157 ~~f~~~A~~~~~~~~F~~~~-------~~~~~~~~~----i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~  224 (504)
T 2b5e_A          157 ATFYSMANKHFNDYDFVSAE-------NADDDFKLS----IYLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALPYFG  224 (504)
T ss_dssp             HHHHHHHHHTTTTCEEEEEE-------CTTSCCEEE----EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSCSSC
T ss_pred             HHHHHHHHHhhcCcEEEEEH-------HHHHhcCCe----EEecCCCC-cccccCCcccccCCHHHHHHHHHhcccCCcc
Confidence            66788999998999998875       266777764    88888755 78889998 6   889999999999999999


Q ss_pred             ccccccccccC
Q 014549          370 QLRSVTSMELG  380 (423)
Q Consensus       370 ~l~~~~~~~~~  380 (423)
                      +++..+...+.
T Consensus       225 ~~t~~~~~~~~  235 (504)
T 2b5e_A          225 EIDGSVFAQYV  235 (504)
T ss_dssp             BCCHHHHHHHH
T ss_pred             cCCHhHHHHHh
Confidence            99999877663

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.94  E-value=1.2e-25  Score=209.59  Aligned_cols=209  Identities=17%  Similarity=0.257  Sum_probs=163.9

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +.|++|+.++|++.+.++++++|.|||+||++|+.+.|.|+++++.+++.   +.++.|||+   ....+|++|+     
T Consensus        15 ~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---~~~~l~~~~~-----   86 (241)
T 3idv_A           15 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT---SASVLASRFD-----   86 (241)
T ss_dssp             TTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETT---TCHHHHHHTT-----
T ss_pred             CCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEecc---CCHHHHHhcC-----
Confidence            45899999999999988999999999999999999999999999999876   899999999   4556999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccC----Cceee-cccchhhhhhhhhcCCCceEEEEEec
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKL----PRIFY-YTKESMGKNFLAKTGPHKVKVIFFSK  287 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~----p~~~~-it~~~~~~~fl~~~~~~~~~vl~f~~  287 (423)
                       |+++||+++|.+|+.     ..|.|.++.+.|.+|+.+.....    +.... ++..+ ++.++....  .++|.|+++
T Consensus        87 -v~~~Pt~~~~~~g~~-----~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~v~f~a~  157 (241)
T 3idv_A           87 -VSGYPTIKILKKGQA-----VDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKEN-FDEVVNDAD--IILVEFYAP  157 (241)
T ss_dssp             -CCSSSEEEEEETTEE-----EECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTT-HHHHHHHCS--EEEEEEECT
T ss_pred             -CCcCCEEEEEcCCCc-----ccccCcccHHHHHHHHhhccCcccccccccceeccHHH-HHHhhccCC--eEEEEEECC
Confidence             999999999988865     37999999999999998874321    11222 44444 556664432  234445553


Q ss_pred             C---CCCCchHHHHHHHhcccc---ceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHH
Q 014549          288 T---GERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (423)
Q Consensus       288 ~---~~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~  361 (423)
                      .   +....|.+..++..+...   +.|+.+....  ..+++++|+|.++||+++|+++  +++.|.|.++.+.|.+||.
T Consensus       158 wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~g--~~~~~~g~~~~~~l~~~l~  233 (241)
T 3idv_A          158 WCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYMI  233 (241)
T ss_dssp             TCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSSEEEEEETT--EEEECCSCCSHHHHHHHHH
T ss_pred             CCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCcccCEEEEEECC--eEEEecCCCCHHHHHHHHH
Confidence            2   233457778888877554   7777775432  4689999999999999999864  4566899999999999999


Q ss_pred             hhcc
Q 014549          362 QNKL  365 (423)
Q Consensus       362 ~~~~  365 (423)
                      ++.-
T Consensus       234 ~~~~  237 (241)
T 3idv_A          234 EQSG  237 (241)
T ss_dssp             HHTT
T ss_pred             hhhC
Confidence            8644

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.90  E-value=6.5e-23  Score=223.20  Aligned_cols=225  Identities=16%  Similarity=0.198  Sum_probs=180.7

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      ..|.+||.++|++.  .+++++|.|||+||++|+.+.|.|+++|+.+++.+.|+.|||+   ....+|++|+      |+
T Consensus       440 ~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~---~~~~~~~~~~------v~  508 (780)
T 3apo_A          440 SHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCT---IHEGLCNMYN------IQ  508 (780)
T ss_dssp             SCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHTT------CC
T ss_pred             CCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCC---CCHHHHHHcC------CC
Confidence            34899999999987  7889999999999999999999999999999988999999999   4456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcC-CCceEEEEEecCC---CC
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTG-PHKVKVIFFSKTG---ER  291 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~-~~~~~vl~f~~~~---~~  291 (423)
                      ++||+++|.+|..     ..|.|.++.++|.+|+.+.+.  |....++.++ ++.++.... +..++|.|+.+.+   +.
T Consensus       509 ~~Pt~~~~~~g~~-----~~~~g~~~~~~l~~fi~~~~~--~~v~~l~~~~-f~~~v~~~~~~~~~lv~F~ap~C~~c~~  580 (780)
T 3apo_A          509 AYPTTVVFNQSSI-----HEYEGHHSAEQILEFIEDLRN--PSVVSLTPST-FNELVKQRKHDEVWMVDFYSPWSHPSQV  580 (780)
T ss_dssp             SSSEEEEEETTEE-----EEECSCSCHHHHHHHHHHHHS--CSEEECCHHH-HHHHTTTCCTTCCEEEEEECTTCHHHHH
T ss_pred             cCCeEEEEcCCce-----eeecCcccHHHHHHHHHhhcc--cceeecCccc-HHHHhhccCCCCeEEEEEECCCCHHHHH
Confidence            9999999977643     478899999999999998843  4454466544 566665432 2335777776532   23


Q ss_pred             CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc---ceeEecC-CCChhHHHHHHHhhcccc
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV---KPVVYYG-SFNNSRLSEVMEQNKLQE  367 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~---~~~~y~g-~~~~~~l~~fi~~~~~~~  367 (423)
                      ..|.+..+|..+++.+.|+.+...  ....++++|+|+++|+|++|+.+..   .+..|.| .++.+.|.+||..+..+.
T Consensus       581 ~~p~~~~lA~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~  658 (780)
T 3apo_A          581 LMPEWKRMARTLTGLINVGSVDCG--QYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQA  658 (780)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEETT--TTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCC
T ss_pred             hhHHHHHHHHHhhCCeEEEEEECc--chHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcccc
Confidence            457788899999888888887532  2367899999999999999987654   4678899 899999999999988777


Q ss_pred             CcccccccccccCC
Q 014549          368 LPQLRSVTSMELGC  381 (423)
Q Consensus       368 lp~l~~~~~~~~~c  381 (423)
                      +.+++..+.....+
T Consensus       659 v~~l~~~~~~~~~~  672 (780)
T 3apo_A          659 SIDLTPQTFNEKVL  672 (780)
T ss_dssp             SEEECHHHHHHHTT
T ss_pred             cccCCHHHHHHHHh
Confidence            88888877766554

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.90  E-value=1.6e-22  Score=189.79  Aligned_cols=210  Identities=12%  Similarity=0.174  Sum_probs=151.0

Q ss_pred             ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      +.|.+||.++|++.+ +++++|+|+|||+||++|+++.|.|+++++.+.+   .+.|++|||+.+ ....+|++++    
T Consensus        12 ~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~-~~~~l~~~~~----   86 (244)
T 3q6o_A           12 DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEE-TNSAVCRDFN----   86 (244)
T ss_dssp             SSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTST-TTHHHHHHTT----
T ss_pred             CCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCch-hhHHHHHHcC----
Confidence            347999999999877 6679999999999999999999999999999988   689999999533 3567999999    


Q ss_pred             ccccCccEEEEeCCCCCCC-CCcccccCCCCHHHHHHHHHHhhccCC----ce----eecccchhhhhhhhhcCCCceEE
Q 014549          212 FFRRGLPSLVAFPPGCKSS-DCMTRFEGELSVDAVTDWFATAILKLP----RI----FYYTKESMGKNFLAKTGPHKVKV  282 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~-~~~~~y~G~~~~~~l~~fi~~~~~~~p----~~----~~it~~~~~~~fl~~~~~~~~~v  282 (423)
                        |.++||+++|.+|.... .....+.| ++.+.|.+|+.+.+....    ..    ..++..+ +..|+... ...+++
T Consensus        87 --v~~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~-l~~~~~~~-~~~~~a  161 (244)
T 3q6o_A           87 --IPGFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEE-IDGFFARN-NEEYLA  161 (244)
T ss_dssp             --CCSSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHH-HHTHHHHC-CCSEEE
T ss_pred             --CCccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHH-HHHHhhcC-CCceEE
Confidence              99999999999875520 11224556 799999999988743221    11    1233333 56676553 345777


Q ss_pred             EEEecCCCCCchHHHHHHHhcccc--ceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEec-CCCChhHHHHH
Q 014549          283 IFFSKTGERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYY-GSFNNSRLSEV  359 (423)
Q Consensus       283 l~f~~~~~~~~~~~~~~a~~~~~~--~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~-g~~~~~~l~~f  359 (423)
                      ++|.+..   ....+.++..+...  +.+..+.   .+...++++|||+++|++++|..++ +...++ ..-+.+.+..+
T Consensus       162 l~f~~~~---~~~~~~~~~d~~~~~~i~v~~~~---~~~~~l~~~f~v~~~Pslvl~~~~g-~~~~~~~~~~~r~~~~~~  234 (244)
T 3q6o_A          162 LIFEXGG---SYLAREVALDLSQHKGVAVRRVL---NTEANVVRKFGVTDFPSCYLLFRNG-SVSRVPVLMESRSFYTAY  234 (244)
T ss_dssp             EEEECTT---CCHHHHHHHHTTTCTTEEEEEEE---TTCHHHHHHHTCCCSSEEEEEETTS-CEEECCCSSSSHHHHHHH
T ss_pred             EEEEECC---cchHHHHHHHhccCCceEEEEEe---CchHHHHHHcCCCCCCeEEEEeCCC-CeEeeccccccHHHHHHH
Confidence            7777532   45566666666633  4444432   2236799999999999999998654 344444 33456677777


Q ss_pred             HHh
Q 014549          360 MEQ  362 (423)
Q Consensus       360 i~~  362 (423)
                      ++.
T Consensus       235 l~~  237 (244)
T 3q6o_A          235 LQR  237 (244)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            766

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.86  E-value=1.3e-20  Score=195.16  Aligned_cols=210  Identities=14%  Similarity=0.175  Sum_probs=151.3

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      .|.+|+.++|++.+ +++++++|.|||+||++|+++.|.|+++++.+++   .+.|++|||+++ ...++|++|+     
T Consensus        13 ~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d-~~~~l~~~~~-----   86 (519)
T 3t58_A           13 PLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEE-TNSAVCREFN-----   86 (519)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSG-GGHHHHHHTT-----
T ss_pred             CcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcc-ccHHHHHHcC-----
Confidence            47999999999876 7779999999999999999999999999999988   689999999743 3567999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCC----c----eeecccchhhhhhhhhcCCCceEEEE
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP----R----IFYYTKESMGKNFLAKTGPHKVKVIF  284 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p----~----~~~it~~~~~~~fl~~~~~~~~~vl~  284 (423)
                       |.++||+++|.+|...-.....+.|.++.+.|.+++.+.+....    .    ...++..+ ++.|+... +..+++++
T Consensus        87 -V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~-l~~~l~~~-~~~~vall  163 (519)
T 3t58_A           87 -IAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLND-IDGFFTRN-KADYLALV  163 (519)
T ss_dssp             -CCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHH-HTTGGGSC-CCSEEEEE
T ss_pred             -CcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHH-HHHHhccC-CCCeEEEE
Confidence             99999999999765411113456688999999999988743211    1    11233333 56666553 45577788


Q ss_pred             EecCCCCCchHHHHHHHhcccc--ceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCC-ChhHHHHHHH
Q 014549          285 FSKTGERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVME  361 (423)
Q Consensus       285 f~~~~~~~~~~~~~~a~~~~~~--~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~-~~~~l~~fi~  361 (423)
                      |++..   +...+.++..+...  +.+..+.   .++..++++|||+++|++++|..++... .+.... ..+.+..++.
T Consensus       164 F~~~~---s~~~~~~~ldl~~~~~v~v~~v~---~~~~~l~~kfgV~~~Pslvl~~~nGk~~-~~~v~~~~r~~~~~~l~  236 (519)
T 3t58_A          164 FERED---SYLGREVTLDLSQYHAVAVRRVL---NTESDLVNKFGVTDFPSCYLLLRNGSVS-RVPVLVESRSFYTSYLR  236 (519)
T ss_dssp             EECTT---CCHHHHHHHHTTTCTTEEEEEEE---TTCHHHHHHHTCCCSSEEEEEETTSCEE-ECCCSSCSHHHHHHHHT
T ss_pred             ecCCc---hHHHHHHHHHhhccCCeeEEEec---CchHHHHHHcCCCCCCeEEEEeCCCcee-ecccccccHHHHHHHHH
Confidence            87542   45667777776644  4444442   2246799999999999999998765432 222222 3345566665


Q ss_pred             h
Q 014549          362 Q  362 (423)
Q Consensus       362 ~  362 (423)
                      .
T Consensus       237 ~  237 (519)
T 3t58_A          237 G  237 (519)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.83  E-value=1.3e-20  Score=158.61  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=93.8

Q ss_pred             cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhh-----ccceEEEEEcccchhhhHHHhhCCC
Q 014549          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-----GIANTGMVELGDIRLATHLAERKPI  208 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-----~~~~~~~Vdc~~~~~~~~l~~~~~~  208 (423)
                      .+.|.+|+.++|++.+ +++++++|.||||||++|+++.|.|+++|+.+.     +.+.++.|||+   ...++|++++ 
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~---~~~~l~~~~~-   89 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE---KYPDVIERMR-   89 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT---TCHHHHHHTT-
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc---ccHhHHHhcC-
Confidence            3458999999999988 568999999999999999999999999999874     45899999999   4556999999 


Q ss_pred             CccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          209 GQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                           |.++||+++|.+|+..  .+..|.|.++.+.|.+|+.+.
T Consensus        90 -----v~~~Pt~~~~~~g~~~--~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           90 -----VSGFPTMRYYTRIDKQ--EPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             -----CCSSSEEEEECSSCSS--SCEECCSCCCHHHHHHHHHHH
T ss_pred             -----CccCCEEEEEeCCCCC--CceEecCCccHHHHHHHHHhc
Confidence                 9999999999998652  135899999999999999764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.83  E-value=7.2e-20  Score=169.10  Aligned_cols=195  Identities=14%  Similarity=0.120  Sum_probs=139.5

Q ss_pred             CCCcEEEEEecC-CCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       152 ~~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      .+.+++|.||+| ||++|+.+.|.|+++|+. .+.+.++.|||++. ...++|++|+      |+++||+++|.+|... 
T Consensus        21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~-~~~~~~~~~~------v~~~Pt~~~~~~g~~~-   91 (226)
T 1a8l_A           21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTP-EGKELAKRYR------IDRAPATTITQDGKDF-   91 (226)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSH-HHHHHHHHTT------CCSSSEEEEEETTBCC-
T ss_pred             CCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCc-ccHHHHHHcC------CCcCceEEEEcCCcee-
Confidence            356778999999 999999999999999964 56789999999941 1567999999      9999999999888542 


Q ss_pred             CCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCce-EEEEEecCC-CC--CchHHHHHHHhcc--
Q 014549          231 DCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKV-KVIFFSKTG-ER--ASPFVRQISRNYW--  304 (423)
Q Consensus       231 ~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~-~vl~f~~~~-~~--~~~~~~~~a~~~~--  304 (423)
                        ...|.|.++.+.+.+|+............++.+. ++.....  ...+ +|.|+++.+ .|  ..|.+..++..+.  
T Consensus        92 --~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~-~~~~~~~--~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~  166 (226)
T 1a8l_A           92 --GVRYFGLPAGHEFAAFLEDIVDVSREETNLMDET-KQAIRNI--DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKA  166 (226)
T ss_dssp             --SEEEESCCCTTHHHHHHHHHHHHHHTCCCCCHHH-HHHHTTC--CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHT
T ss_pred             --eEEEeccCcHHHHHHHHHHHHhhcCCCCCCCHHH-HHHHHhc--CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccc
Confidence              3589999999999999977521111111133222 2333221  2234 555666532 22  3466777787775  


Q ss_pred             --ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          305 --AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       305 --~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                        +.+.++.+...  +...++++|+|.++||+++|+++ .....|.|..+.+.|.+||++.
T Consensus       167 ~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          167 GKGKILGDMVEAI--EYPEWADQYNVMAVPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             TCCCEEEEEEEGG--GCHHHHHHTTCCSSCEEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             cCCcEEEEEEEcc--cCHHHHHhCCCcccCeEEEEeCC-ceeEEEcCCCCHHHHHHHHHHh
Confidence              35666666533  23779999999999999999854 3445678999999999999874

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.83  E-value=9.4e-20  Score=168.89  Aligned_cols=195  Identities=10%  Similarity=0.030  Sum_probs=139.0

Q ss_pred             ccccc--CCCCcEEEEEe-----cCCCccccccHHHHHHHHHHh--hccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          146 FPSIF--HDSKPWLIQVY-----SDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       146 f~~~v--~~~~~~lV~FY-----apwC~~C~~~~p~~~~~A~~l--~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +.+++  +...+++|.||     +|||+||+++.|+|+++|+.+  .+.+.+++|||+   .+.++|++|+      |++
T Consensus        11 l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~---~~~~l~~~~~------v~~   81 (229)
T 2ywm_A           11 LKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPF---THKEETEKYG------VDR   81 (229)
T ss_dssp             HHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTT---TCHHHHHHTT------CCB
T ss_pred             HHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCc---ccHHHHHHcC------CCc
Confidence            44445  34566776666     899999999999999999998  667999999999   5566999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCce-EEEEEecCC-CC--C
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKV-KVIFFSKTG-ER--A  292 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~-~vl~f~~~~-~~--~  292 (423)
                      +||+++|.+|..    ...|.|.++.+.+.+|+.+.+........++... ++.....  ...+ ++.|+++.+ .|  .
T Consensus        82 ~Ptl~~~~~~~~----~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~~--~~~~~~v~F~a~wC~~C~~~  154 (229)
T 2ywm_A           82 VPTIVIEGDKDY----GIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKT-LELLQVV--DIPIEIWVFVTTSCGYCPSA  154 (229)
T ss_dssp             SSEEEEESSSCC----CEEEESCCCTTHHHHHHHHHHHHHTTCCSCCHHH-HHHHTTC--CSCEEEEEEECTTCTTHHHH
T ss_pred             CcEEEEECCCcc----cceecCCccHHHHHHHHHHHHhccCCccCCCHHH-HHHHHhc--CCCeEEEEEECCCCcchHHH
Confidence            999999986543    5689999999999999987632111122234333 3433321  2234 344666432 22  3


Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..+ +.+.++.+....  .++++++|+|.++|++++  ++ . ...|.|..+.+.|.+||++.
T Consensus       155 ~~~~~~~~~~~-~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~--~G-~-~~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          155 AVMAWDFALAN-DYITSKVIDASE--NQDLAEQFQVVGVPKIVI--NK-G-VAEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             HHHHHHHHHHC-TTEEEEEEEGGG--CHHHHHHTTCCSSSEEEE--GG-G-TEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCeEEEEEECCC--CHHHHHHcCCcccCEEEE--CC-E-EEEeeCCCCHHHHHHHHHHH
Confidence            46667777776 466676665332  377999999999999998  33 2 44588999999999999874

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.82  E-value=8.8e-20  Score=180.68  Aligned_cols=211  Identities=15%  Similarity=0.167  Sum_probs=155.5

Q ss_pred             eeeEeccCCcccccCC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|.++|.++|...+.+ ..+++|.||++||++|+++.|.|+++|+.+++.+.|+.|||++. ....+|+.+|      |+
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~-~~~~~~~~fg------i~  190 (361)
T 3uem_A          118 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHT-DNQRILEFFG------LK  190 (361)
T ss_dssp             SEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSG-GGHHHHHHTT------CC
T ss_pred             cceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChH-HHHHHHHHcC------CC
Confidence            4789999999988844 56789999999999999999999999999999999999999832 2456999999      77


Q ss_pred             C--ccEEEEeCCCCCCCCCccccc---CCCCHHHHHHHHHHhhcc----------CCc------eeecccchhhhhhhhh
Q 014549          216 G--LPSLVAFPPGCKSSDCMTRFE---GELSVDAVTDWFATAILK----------LPR------IFYYTKESMGKNFLAK  274 (423)
Q Consensus       216 ~--~Pti~~f~~g~~~~~~~~~y~---G~~~~~~l~~fi~~~~~~----------~p~------~~~it~~~~~~~fl~~  274 (423)
                      +  +|++++|..+..    ...|.   |.++.+.|.+|+.+.+..          +|.      ...++..+ ++.++..
T Consensus       191 ~~~~P~~~~~~~~~~----~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~-f~~~~~~  265 (361)
T 3uem_A          191 KEECPAVRLITLEEE----MTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKN-FEDVAFD  265 (361)
T ss_dssp             TTTCSEEEEEECC------CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTT-HHHHHTC
T ss_pred             ccCCccEEEEEcCCc----ccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCc-hhhhccc
Confidence            7  999999998643    34665   799999999999886321          111      11134444 3443321


Q ss_pred             cCCCceEEEEEecCC---CCCchHHHHHHHhcccc--ceEEEEEccccccHHHHhhcCCCCCCeEEEecCC-CcceeEec
Q 014549          275 TGPHKVKVIFFSKTG---ERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYY  348 (423)
Q Consensus       275 ~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~~--~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~-~~~~~~y~  348 (423)
                       ....++|.|+++.|   ....|.+..++..|.+.  +.++.+.   ++.. .+++|+|.++||+++|+.+ +..+..|.
T Consensus       266 -~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd---~~~~-~~~~~~v~~~Pt~~~~~~~~~~~~~~~~  340 (361)
T 3uem_A          266 -EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD---STAN-EVEAVKVHSFPTLKFFPASADRTVIDYN  340 (361)
T ss_dssp             -TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEE---TTTC-BCSSCCCCSSSEEEEECSSSSCCCEECC
T ss_pred             -CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEE---CCcc-chhhcCCcccCeEEEEECCCCcceeEec
Confidence             12224555666532   22457788888888765  5555554   3222 2789999999999999766 45678899


Q ss_pred             CCCChhHHHHHHHhhc
Q 014549          349 GSFNNSRLSEVMEQNK  364 (423)
Q Consensus       349 g~~~~~~l~~fi~~~~  364 (423)
                      |.++.+.|.+||+++.
T Consensus       341 G~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          341 GERTLDGFKKFLESGG  356 (361)
T ss_dssp             SCSSHHHHHHHHTTTS
T ss_pred             CCCCHHHHHHHHHhcC
Confidence            9999999999999864

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.79  E-value=9.9e-20  Score=138.50  Aligned_cols=67  Identities=33%  Similarity=0.541  Sum_probs=62.9

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      ..|||++|||+++++.++||+|||++++++|||+++++.++|++|++||++|+||.+|..||.+|++
T Consensus         7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            4699999999999999999999999999999999988889999999999999999999999999863

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=146.66  Aligned_cols=107  Identities=19%  Similarity=0.354  Sum_probs=95.1

Q ss_pred             ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      +.|.+|+.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+.+.+.|+.|||+   ....+|++++      |
T Consensus        17 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~l~~~~~------v   87 (130)
T 2dml_A           17 DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD---KHQSLGGQYG------V   87 (130)
T ss_dssp             SSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETT---TCHHHHHHHT------C
T ss_pred             CCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCC---CCHHHHHHcC------C
Confidence            457999999999855 77899999999999999999999999999999988999999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhc
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~  254 (423)
                      .++||+++|.+|+..   ...|.|.++.+.|.+|+.+.+.
T Consensus        88 ~~~Pt~~~~~~~~~~---~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           88 QGFPTIKIFGANKNK---PEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             CSSSEEEEESSCTTS---CEECCSCCSHHHHHHHHHHHHH
T ss_pred             CccCEEEEEeCCCCe---EEEeecCCCHHHHHHHHHHHHh
Confidence            999999999988652   4578999999999999988743

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.77  E-value=2.9e-19  Score=137.36  Aligned_cols=69  Identities=26%  Similarity=0.475  Sum_probs=64.4

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      ..|||++|||+++++.++||+|||++++++|||+++  ++.+.|+.|++||++|+||.+|..||.+|..+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            469999999999999999999999999999999986  578899999999999999999999999987653

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.77  E-value=2.5e-19  Score=146.25  Aligned_cols=99  Identities=15%  Similarity=0.240  Sum_probs=84.4

Q ss_pred             eEec-cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          139 NVVT-SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       139 ~~L~-~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .+++ .++|++.|  .++++++|.||||||++|+.+.|.|+++++.+.+ +.+++|||+   ..+++|++|+      |+
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d---~~~~l~~~~~------V~   72 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVD---ECEDIAQDNQ------IA   72 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETT---TCHHHHHHTT------CC
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEecc---cCHHHHHHcC------CC
Confidence            4454 46899888  4578999999999999999999999999998764 689999999   4556999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ...+.| .+.++|.+|+.++
T Consensus        73 ~~PT~~~~~~G~~----v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           73 CMPTFLFMKNGQK----LDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             BSSEEEEEETTEE----EEEEES-CCHHHHHHHHHHH
T ss_pred             eecEEEEEECCEE----EEEEeC-cCHHHHHHHHHhc
Confidence            9999999999876    456778 5899999999875

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.9e-19  Score=137.70  Aligned_cols=71  Identities=27%  Similarity=0.481  Sum_probs=65.4

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      +...|||++|||+++++.++||+|||++++++|||+++  ++.++|+.|++||++|+||.+|..||.+|..+.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   76 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS   76 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            44679999999999999999999999999999999986  467889999999999999999999999987653

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=4.6e-19  Score=136.96  Aligned_cols=70  Identities=26%  Similarity=0.512  Sum_probs=64.7

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ....|||++|||+++++.++||+|||++++++|||+++   .+.++|+.|++||++|+||.+|..||.+|..+
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            44679999999999999999999999999999999986   35788999999999999999999999998765

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=6.2e-19  Score=137.24  Aligned_cols=71  Identities=30%  Similarity=0.476  Sum_probs=65.1

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ++...|||++|||+++++.++||+|||+++++||||++++    +.++|++|++||++|+||.+|..||.+|+.+
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4556899999999999999999999999999999999874    3568999999999999999999999999765

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3e-19  Score=142.02  Aligned_cols=69  Identities=30%  Similarity=0.590  Sum_probs=65.5

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      ..|||+||||+++++.++||+|||+|++++|||++++..++|++|++||++|+||.+|..||.+|..+.
T Consensus         7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   75 (92)
T 2o37_A            7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAA   75 (92)
T ss_dssp             CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence            569999999999999999999999999999999998888999999999999999999999999987653

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=8.5e-19  Score=138.25  Aligned_cols=70  Identities=29%  Similarity=0.573  Sum_probs=65.2

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ....|||++|||+++++.++||+|||++++++|||+++  .+.++|++|++||++|+||.+|..||.+|..+
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            34779999999999999999999999999999999986  57889999999999999999999999998765

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.75  E-value=1.1e-18  Score=142.41  Aligned_cols=103  Identities=16%  Similarity=0.287  Sum_probs=94.0

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|.+||.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....+|++++      |.
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~---~~~~l~~~~~------v~   75 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVE---EEKTLFQRFS------LK   75 (111)
T ss_dssp             CSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TCHHHHHHTT------CC
T ss_pred             cceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECC---cChhHHHhcC------CC
Confidence            47899999999998 88999999999999999999999999999999988999999999   4556999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|+.    ...|.|.++.+.|.+|+.+.
T Consensus        76 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  108 (111)
T 3gnj_A           76 GVPQILYFKDGEY----KGKMAGDVEDDEVEQMIADV  108 (111)
T ss_dssp             SSCEEEEEETTEE----EEEEESSCCHHHHHHHHHHH
T ss_pred             cCCEEEEEECCEE----EEEEeccCCHHHHHHHHHHH
Confidence            9999999988865    45788999999999999876

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.75  E-value=3.2e-18  Score=152.12  Aligned_cols=107  Identities=15%  Similarity=0.306  Sum_probs=91.5

Q ss_pred             eeeEeccCCcccccCC--CCcEEEEEec-------CCCccccccHHHHHHHHHHhh-----ccceEEEEEcccchhhhHH
Q 014549          137 AFNVVTSEDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLE-----GIANTGMVELGDIRLATHL  202 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~--~~~~lV~FYa-------pwC~~C~~~~p~~~~~A~~l~-----~~~~~~~Vdc~~~~~~~~l  202 (423)
                      .|++||++||+++|.+  +.+++|.|||       +||++|+.++|+|+++|+++.     +.+.|++||+++   .+++
T Consensus        19 ~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~---~~~l   95 (178)
T 3ga4_A           19 GVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE---VPQL   95 (178)
T ss_dssp             SEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT---CHHH
T ss_pred             CCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc---CHHH
Confidence            4899999999998843  5679999999       499999999999999999998     789999999994   5569


Q ss_pred             HhhCCCCccccccCccEEEEeCCCCCCC--------CCcccc---cC-CCCHHHHHHHHHHh
Q 014549          203 AERKPIGQIFFRRGLPSLVAFPPGCKSS--------DCMTRF---EG-ELSVDAVTDWFATA  252 (423)
Q Consensus       203 ~~~~~~~~~~~i~~~Pti~~f~~g~~~~--------~~~~~y---~G-~~~~~~l~~fi~~~  252 (423)
                      +++|+      |+++|||++|++|....        .....|   .| .++++.|.+|+.+.
T Consensus        96 a~~~~------I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~  151 (178)
T 3ga4_A           96 VKDLK------LQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI  151 (178)
T ss_dssp             HHHTT------CCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred             HHHcC------CCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence            99999      99999999999997521        012345   35 89999999999987

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.75  E-value=1.1e-18  Score=142.12  Aligned_cols=105  Identities=15%  Similarity=0.272  Sum_probs=91.8

Q ss_pred             CcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhh---ccceEEEEEcccchhhhHHHhhCCCCc
Q 014549          134 SVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE---GIANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       134 ~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~---~~~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      ..+.|.+||.++|++.+. +++++|.||++||++|+.+.|.|+++++.+.   +.+.++.|||+   ....+|++++   
T Consensus         3 ~~~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~l~~~~~---   75 (111)
T 3uvt_A            3 LGSTVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT---AERNICSKYS---   75 (111)
T ss_dssp             --CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT---TCHHHHHHTT---
T ss_pred             CCCcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecc---ccHhHHHhcC---
Confidence            345689999999999987 7799999999999999999999999999875   35799999999   4556999999   


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |.++||+++|.+|+.    ...|.|.++.+.|.+|+.+.
T Consensus        76 ---v~~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           76 ---VRGYPTLLLFRGGKK----VSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             ---CCSSSEEEEEETTEE----EEEECSCCSHHHHHHHHHHH
T ss_pred             ---CCcccEEEEEeCCcE----EEeccCCcCHHHHHHHHHhc
Confidence               999999999988865    45788999999999999875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2.1e-18  Score=145.43  Aligned_cols=106  Identities=17%  Similarity=0.318  Sum_probs=94.6

Q ss_pred             cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhh----ccceEEEEEcccchhhhHHHhhCCCC
Q 014549          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIG  209 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~----~~~~~~~Vdc~~~~~~~~l~~~~~~~  209 (423)
                      .+.|.+|+.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+.    +.+.|+.|||++   ...+|++++  
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~--   80 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV---NQVLASRYG--   80 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT---CCHHHHHHT--
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC---CHHHHHhCC--
Confidence            3458999999999876 778999999999999999999999999999998    679999999994   456999999  


Q ss_pred             ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                          |.++||+++|.+|+.    ...|.|.++.+.|.+|+.+.+
T Consensus        81 ----v~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~~  116 (133)
T 1x5d_A           81 ----IRGFPTIKIFQKGES----PVDYDGGRTRSDIVSRALDLF  116 (133)
T ss_dssp             ----CCSSSEEEEEETTEE----EEEECSCCSHHHHHHHHHHHH
T ss_pred             ----CCeeCeEEEEeCCCc----eEEecCCCCHHHHHHHHHHHh
Confidence                999999999998764    467899999999999998874

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.74  E-value=3e-18  Score=140.75  Aligned_cols=101  Identities=9%  Similarity=0.071  Sum_probs=91.8

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      |++|+.++|++.+ ++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+++   .++|++++      |.++
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~------v~~~   72 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN---QETAGKYG------VMSI   72 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTC---CSHHHHTT------CCSB
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCC---HHHHHHcC------CCcc
Confidence            6789999999988 889999999999999999999999999999988899999999954   45999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|.+|+.    ...|.|..+.++|.+|+.+.
T Consensus        73 Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  103 (112)
T 2voc_A           73 PTLLVLKDGEV----VETSVGFKPKEALQELVNKH  103 (112)
T ss_dssp             SEEEEEETTEE----EEEEESCCCHHHHHHHHHTT
T ss_pred             cEEEEEeCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            99999977765    45788999999999999877

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.74  E-value=2.8e-18  Score=139.16  Aligned_cols=103  Identities=17%  Similarity=0.309  Sum_probs=94.0

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .|.++|.++|++.+.++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....++++++      |.+
T Consensus         5 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------i~~   75 (109)
T 3tco_A            5 VTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD---ENQKIADKYS------VLN   75 (109)
T ss_dssp             CCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TCHHHHHHTT------CCS
T ss_pred             eEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccc---cCHHHHHhcC------ccc
Confidence            4789999999999988999999999999999999999999999999988999999999   4556999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|+.    ...|.|.++.+.|.+|+.+.
T Consensus        76 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  107 (109)
T 3tco_A           76 IPTTLIFVNGQL----VDSLVGAVDEDTLESTVNKY  107 (109)
T ss_dssp             SSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCcE----EEeeeccCCHHHHHHHHHHH
Confidence            999999988765    45788999999999999876

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.5e-18  Score=136.88  Aligned_cols=70  Identities=31%  Similarity=0.506  Sum_probs=64.5

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ....|||++|||+++++.++||+|||+|++++|||+++.  +.++|++|++||++|+||.+|..||.+|..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            346799999999999999999999999999999999873  5778999999999999999999999998765

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.74  E-value=3.8e-18  Score=137.80  Aligned_cols=102  Identities=20%  Similarity=0.270  Sum_probs=92.5

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .|.+|+.++|++.+ ++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....++++++      |++
T Consensus         4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------v~~   73 (106)
T 3die_A            4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVD---ENPSTAAKYE------VMS   73 (106)
T ss_dssp             CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHTT------CCS
T ss_pred             ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECC---cCHHHHHhCC------Ccc
Confidence            36889999999999 8999999999999999999999999999999988999999999   4456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|+.    ...+.|.++.++|.+|+.+.
T Consensus        74 ~Pt~~~~~~G~~----~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           74 IPTLIVFKDGQP----VDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             BSEEEEEETTEE----EEEEESCCCHHHHHHHHHTT
T ss_pred             cCEEEEEeCCeE----EEEEeCCCCHHHHHHHHHHh
Confidence            999999988765    45788999999999999764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.73  E-value=1.3e-17  Score=138.31  Aligned_cols=103  Identities=19%  Similarity=0.385  Sum_probs=89.7

Q ss_pred             ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc-----cceEEEEEcccchhhhHHHhhCCCC
Q 014549          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-----IANTGMVELGDIRLATHLAERKPIG  209 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-----~~~~~~Vdc~~~~~~~~l~~~~~~~  209 (423)
                      +.|.+|+.++|++.+ .++++++|.||++||++|+++.|.|+++++.+.+     .+.++.|||++++    +++  +  
T Consensus         7 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~--~--   78 (121)
T 2djj_A            7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND----VPD--E--   78 (121)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----CSS--C--
T ss_pred             CCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----ccc--c--
Confidence            457999999999987 7889999999999999999999999999999987     6899999999654    554  6  


Q ss_pred             ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          |.++||+++|.+|+..  ....|.|.++.+.|.+|+.+.
T Consensus        79 ----v~~~Pt~~~~~~~~~~--~~~~~~G~~~~~~l~~~i~~~  115 (121)
T 2djj_A           79 ----IQGFPTIKLYPAGAKG--QPVTYSGSRTVEDLIKFIAEN  115 (121)
T ss_dssp             ----CSSSSEEEEECSSCTT--SCCCCCCCSCHHHHHHHHHHT
T ss_pred             ----cCcCCeEEEEeCcCCC--CceEecCCCCHHHHHHHHHhc
Confidence                9999999999988541  134788999999999999887

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=4.3e-18  Score=145.07  Aligned_cols=104  Identities=17%  Similarity=0.304  Sum_probs=93.9

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +.|.+|+.++|++.+.++++++|.||++||++|+++.|.|+++++.+.+.   +.++.|||+   ....+|++|+     
T Consensus        17 ~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~---~~~~~~~~~~-----   88 (140)
T 2dj1_A           17 NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT---SASMLASKFD-----   88 (140)
T ss_dssp             TTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT---TCHHHHHHTT-----
T ss_pred             CCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc---ccHHHHHHCC-----
Confidence            45899999999999988999999999999999999999999999999876   899999999   4456999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                       |.++||+++|.+|+.     ..|.|.++.+.|.+|+.+.+
T Consensus        89 -v~~~Pt~~~~~~G~~-----~~~~g~~~~~~l~~~l~~~~  123 (140)
T 2dj1_A           89 -VSGYPTIKILKKGQA-----VDYDGSRTQEEIVAKVREVS  123 (140)
T ss_dssp             -CCSSSEEEEEETTEE-----EECCSCCCHHHHHHHHHHHH
T ss_pred             -CCccCeEEEEECCcE-----EEcCCCCCHHHHHHHHHHhc
Confidence             999999999987753     47889999999999998873

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.73  E-value=5.9e-18  Score=137.39  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=91.5

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|++|+.++|++.+ +++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+++   ..++++++      |.
T Consensus         3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~------v~   73 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYG------IR   73 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC---TTHHHHTT------CC
T ss_pred             cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCC---HHHHHHcC------Cc
Confidence            47899999999655 7789999999999999999999999999999988899999999944   45999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ...+.|..+.+.|.+|+.+.
T Consensus        74 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  106 (108)
T 2trx_A           74 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ccCEEEEEeCCEE----EEEEecCCCHHHHHHHHHHh
Confidence            9999999987765    45678999999999999775

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.73  E-value=7.2e-18  Score=145.51  Aligned_cols=105  Identities=17%  Similarity=0.306  Sum_probs=95.6

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .+..++.++|++.+..+++++|.||++||++|+.+.|.|+++++.+.+.+.|+.||++   ....++++|+      |.+
T Consensus        39 ~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~---~~~~l~~~~~------v~~  109 (148)
T 3p2a_A           39 EVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTE---AEPALSTRFR------IRS  109 (148)
T ss_dssp             CCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHTT------CCS
T ss_pred             CceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECc---CCHHHHHHCC------CCc
Confidence            3799999999999989999999999999999999999999999999888999999999   4556999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhc
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~  254 (423)
                      +||+++|.+|+.    ...|.|.++.+.|.+|+.+.+.
T Consensus       110 ~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          110 IPTIMLYRNGKM----IDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             SSEEEEEETTEE----EEEESSCCCHHHHHHHHHHHHH
T ss_pred             cCEEEEEECCeE----EEEEeCCCCHHHHHHHHHHHhc
Confidence            999999988865    4578899999999999988744

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.73  E-value=4.2e-18  Score=137.56  Aligned_cols=102  Identities=12%  Similarity=0.207  Sum_probs=91.0

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      |++|+.++|++.+.++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++   ...++++++      |.++
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~---~~~~~~~~~------v~~~   72 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE---NPETTSQFG------IMSI   72 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT---CHHHHHHTT------CCSS
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC---CHHHHHHcC------Cccc
Confidence            6889999999878888999999999999999999999999999998889999999994   456999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|.+|+.    ...+.|..+.+.|.+|+.+.
T Consensus        73 Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           73 PTLILFKGGRP----VKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             SEEEEEETTEE----EEEEESCCCHHHHHHHTTTT
T ss_pred             cEEEEEeCCeE----EEEEecCCCHHHHHHHHHHH
Confidence            99999987764    45688999999999998654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.72  E-value=8.9e-18  Score=135.80  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=91.8

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|++|+.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||++   ...++++++      |.
T Consensus         3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~------v~   73 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD---NPETPNAYQ------VR   73 (107)
T ss_dssp             CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTT---CCHHHHHTT------CC
T ss_pred             ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCC---CHHHHHhcC------CC
Confidence            47899999999766 788999999999999999999999999999998889999999994   456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ...+.|..+.+.|.+|+.+.
T Consensus        74 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           74 SIPTLMLVRDGKV----IDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHT
T ss_pred             ccCEEEEEeCCEE----EEEecCCCCHHHHHHHHHhc
Confidence            9999999987765    44688999999999999764

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=2.4e-18  Score=141.79  Aligned_cols=72  Identities=24%  Similarity=0.289  Sum_probs=65.6

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      .+...|||++|||+++++.++||+|||+|+++||||++++   +.++|++|++||++|+||.+|+.||.+|..+.
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            3456899999999999999999999999999999999863   67899999999999999999999999986653

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=5.6e-18  Score=138.90  Aligned_cols=72  Identities=25%  Similarity=0.414  Sum_probs=65.8

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      ++...|||++|||+++++.++||+|||+|++++|||++++   +.++|++|++||++|+||.+|+.||.+|..+.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   87 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL   87 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence            4457899999999999999999999999999999999874   46789999999999999999999999997654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.72  E-value=5.3e-18  Score=145.18  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=94.1

Q ss_pred             ceeeEeccCCcc-cccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          136 HAFNVVTSEDFP-SIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       136 ~~v~~L~~~nf~-~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      +.|.+|+.++|. .+++++++++|.||++||++|+.+.|.|+++++.+.+.+.|+.|||+   ....+|++++      |
T Consensus         6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~---~~~~l~~~~~------v   76 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIA---TNPWTAEKYG------V   76 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETT---TCHHHHHHHT------C
T ss_pred             cceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC---cCHhHHHHCC------C
Confidence            347999999999 55688999999999999999999999999999999998999999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .++||+++|.+|+.    ...|.|.++.+.|.+|+.+.
T Consensus        77 ~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  110 (140)
T 3hz4_A           77 QGTPTFKFFCHGRP----VWEQVGQIYPSILKNAVRDM  110 (140)
T ss_dssp             CEESEEEEEETTEE----EEEEESSCCHHHHHHHHHHH
T ss_pred             CcCCEEEEEeCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence            99999999988865    45788999999999999887

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.72  E-value=6.4e-18  Score=136.85  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=92.8

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .|++|+.++|+++++++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||++   ...++++++      |.+
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~------v~~   72 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE---NPKTAMRYR------VMS   72 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT---CHHHHHHTT------CCS
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC---CHhHHHhCC------CCc
Confidence            37899999999888888999999999999999999999999999998889999999994   456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|+.    ...+.|..+.++|.+|+.+.
T Consensus        73 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           73 IPTVILFKDGQP----VEVLVGAQPKRNYQAKIEKH  104 (109)
T ss_dssp             SSEEEEEETTEE----EEEEESCCCHHHHHHHHHTT
T ss_pred             CCEEEEEeCCcE----eeeEeCCCCHHHHHHHHHHH
Confidence            999999987765    34688999999999999876

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=3.4e-18  Score=137.52  Aligned_cols=67  Identities=27%  Similarity=0.525  Sum_probs=61.9

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .|||++|||+++++.++||+|||+++++||||++++    +.++|++|++||++|+||.+|+.||.+|..+
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            489999999999999999999999999999999874    4678999999999999999999999998655

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.72  E-value=4.9e-18  Score=139.97  Aligned_cols=106  Identities=17%  Similarity=0.312  Sum_probs=92.7

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +.|.+|+.++|++.+.++++++|.||++||++|+.+.|.|+++++.+.+   .+.++.|||+++   ..+|++++     
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~-----   78 (120)
T 1mek_A            7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE---SDLAQQYG-----   78 (120)
T ss_dssp             TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC---CSSHHHHT-----
T ss_pred             CCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC---HHHHHHCC-----
Confidence            3479999999999998899999999999999999999999999999874   479999999954   45899999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|+..  ....|.|.++.+.|.+|+.+.
T Consensus        79 -v~~~Pt~~~~~~g~~~--~~~~~~g~~~~~~l~~~l~~~  115 (120)
T 1mek_A           79 -VRGYPTIKFFRNGDTA--SPKEYTAGREADDIVNWLKKR  115 (120)
T ss_dssp             -CCSSSEEEEEESSCSS--SCEECCCCSSHHHHHHHHHTT
T ss_pred             -CCcccEEEEEeCCCcC--CcccccCccCHHHHHHHHHhc
Confidence             9999999999888641  125788999999999999876

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.72  E-value=7.5e-18  Score=135.08  Aligned_cols=101  Identities=13%  Similarity=0.184  Sum_probs=91.3

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      |++||.++|++.+.++++++|.||++||++|+.+.|.|+++++.+.+ +.++.|||+   ....++++++      |.++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~---~~~~~~~~~~------v~~~   70 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSD---ENPDIAARYG------VMSL   70 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT---TCHHHHHHTT------CCSS
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECC---CCHHHHHhCC------cccc
Confidence            57899999999998889999999999999999999999999999988 999999999   4456999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|.+|+.    ...|.|..+.++|.+|+.+.
T Consensus        71 Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  101 (104)
T 2e0q_A           71 PTVIFFKDGEP----VDEIIGAVPREEIEIRIKNL  101 (104)
T ss_dssp             CEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CEEEEEECCeE----hhhccCCCCHHHHHHHHHHH
Confidence            99999987765    45788999999999999876

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.72  E-value=9.5e-18  Score=146.45  Aligned_cols=102  Identities=17%  Similarity=0.300  Sum_probs=93.1

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      +++++.++|++.+.++++++|.||++||++|+.+.|.|+++++.+.+.+.|+.|||+   ....++++|+      |+++
T Consensus        49 ~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~---~~~~l~~~~~------i~~~  119 (155)
T 2ppt_A           49 VAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQ---AHPAVAGRHR------IQGI  119 (155)
T ss_dssp             EEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETT---TSTHHHHHTT------CCSS
T ss_pred             CccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCC---ccHHHHHHcC------CCcC
Confidence            688999999998888899999999999999999999999999999988999999999   4456999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|.+|+.    ...|.|..+.++|.+|+.+.
T Consensus       120 Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  150 (155)
T 2ppt_A          120 PAFILFHKGRE----LARAAGARPASELVGFVRGK  150 (155)
T ss_dssp             SEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCeE----EEEecCCCCHHHHHHHHHHH
Confidence            99999988765    45688999999999999876

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.72  E-value=6.5e-18  Score=140.48  Aligned_cols=106  Identities=13%  Similarity=0.263  Sum_probs=92.0

Q ss_pred             ceeeEeccCCccc-ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          136 HAFNVVTSEDFPS-IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       136 ~~v~~L~~~nf~~-~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      +.|.+||.++|.+ +++++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ...++|++++      |
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------v   73 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQ---AYPQTCQKAG------I   73 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETT---TCHHHHHHTT------C
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCc---CCHHHHHHcC------C
Confidence            3478999999965 5588899999999999999999999999999999988999999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCC----CCHHHHHHHHHHhhc
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGE----LSVDAVTDWFATAIL  254 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~----~~~~~l~~fi~~~~~  254 (423)
                      .++||+++|.+|+.    ...+.|.    ++.+.|.+|+.+.+.
T Consensus        74 ~~~Pt~~~~~~~~~----~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           74 KAYPSVKLYQYERA----KKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             CSSSEEEEEEEEGG----GTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCc----cceeeccccCcCCHHHHHHHHHHHHH
Confidence            99999999987754    3456665    899999999988744

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.71  E-value=1.5e-17  Score=136.07  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=91.7

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|.+++.++|.+.+ +++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++   ...++++++      |.
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~------v~   76 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE---NPGTAAKYG------VM   76 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT---CHHHHHHTT------CC
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCC---CHHHHHhCC------CC
Confidence            47899999998655 778999999999999999999999999999998889999999994   456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|+.    ...+.|..+.+.|.+|+.+.
T Consensus        77 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  109 (112)
T 1t00_A           77 SIPTLNVYQGGEV----AKTIVGAKPKAAIVRDLEDF  109 (112)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHTHHH
T ss_pred             cccEEEEEeCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            9999999988765    45688999999999999876

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.3e-17  Score=139.70  Aligned_cols=102  Identities=19%  Similarity=0.372  Sum_probs=90.1

Q ss_pred             cceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .+.|++||.++|+++++..  ++|.||++||++|+.+.|.|+++++.+.+ .+.++.|||+   ....+|++++      
T Consensus         6 ~~~v~~l~~~~f~~~~~~~--vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~---~~~~~~~~~~------   74 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT---EQPGLSGRFI------   74 (126)
T ss_dssp             CCSEEECCTTTHHHHTSSE--EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETT---TCHHHHHHTT------
T ss_pred             CCccEEecHHHHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECc---CCHHHHHHcC------
Confidence            3458999999999888543  99999999999999999999999999986 5899999999   4456999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |.++||+++|.+|+.     ..|.|.++.+.|.+|+.+.
T Consensus        75 v~~~Pt~~~~~~G~~-----~~~~G~~~~~~l~~~l~~~  108 (126)
T 1x5e_A           75 INALPTIYHCKDGEF-----RRYQGPRTKKDFINFISDK  108 (126)
T ss_dssp             CCSSSEEEEEETTEE-----EECCSCCCHHHHHHHHHTC
T ss_pred             CcccCEEEEEeCCeE-----EEeecCCCHHHHHHHHHHH
Confidence            999999999977753     4789999999999999876

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=5.1e-18  Score=134.96  Aligned_cols=70  Identities=30%  Similarity=0.509  Sum_probs=64.4

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      +...|||++|||+++++.++||+|||+|+++||||+++.    +.++|++|++||++|+||.+|..||.+|..+
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   79 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS   79 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            446799999999999999999999999999999999874    4678999999999999999999999998765

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.71  E-value=2e-17  Score=135.51  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=92.4

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|.+|+.++|++.+ .++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....+|++++      |.
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~---~~~~~~~~~~------v~   78 (115)
T 1thx_A            8 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID---PNPTTVKKYK------VE   78 (115)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEEST---TCHHHHHHTT------CC
T ss_pred             ceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcC---CCHHHHHHcC------CC
Confidence            47999999999775 78899999999999999999999999999999888999999999   4456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|..    ...+.|.++.+.|.+|+.+.
T Consensus        79 ~~Pt~~~~~~G~~----~~~~~g~~~~~~l~~~l~~~  111 (115)
T 1thx_A           79 GVPALRLVKGEQI----LDSTEGVISKDKLLSFLDTH  111 (115)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ceeEEEEEcCCEE----EEEecCCCCHHHHHHHHHHH
Confidence            9999999987765    34688999999999999876

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.71  E-value=7.7e-18  Score=136.53  Aligned_cols=97  Identities=13%  Similarity=0.158  Sum_probs=76.9

Q ss_pred             ccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549          142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       142 ~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      |.++|++.++++++++|.||+|||++|+.+.|.|+++++.+. .+.++.|||+++   ..++++++      |.++||++
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~---~~l~~~~~------v~~~Pt~~   76 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDM---QEIAGRYA------VFTGPTVL   76 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC------------------CCCCEEE
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCC---HHHHHhcC------CCCCCEEE
Confidence            567899999899999999999999999999999999999884 589999999944   45999999      99999999


Q ss_pred             EeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       222 ~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|.+|+.    ...+.|..+.+.|.+++.+.
T Consensus        77 ~~~~G~~----~~~~~g~~~~~~l~~~l~~~  103 (105)
T 4euy_A           77 LFYNGKE----ILRESRFISLENLERTIQLF  103 (105)
T ss_dssp             EEETTEE----EEEEESSCCHHHHHHHHHTT
T ss_pred             EEeCCeE----EEEEeCCcCHHHHHHHHHHh
Confidence            9998865    45778999999999999765

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.71  E-value=9.5e-18  Score=142.27  Aligned_cols=103  Identities=13%  Similarity=0.039  Sum_probs=92.4

Q ss_pred             eeeEeccCCcccccCCC-CcEEEEEecCCC--ccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTSEDFPSIFHDS-KPWLIQVYSDGS--YLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~-~~~lV~FYapwC--~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      ...++|+++|++.|.+. .+++|.|||+||  ++|+.++|..+++|+++.+.++|++||.+   .+++++.+|+      
T Consensus        16 g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvD---e~~~la~~yg------   86 (137)
T 2qsi_A           16 APTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAE---AERGLMARFG------   86 (137)
T ss_dssp             -CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGG---GHHHHHHHHT------
T ss_pred             CCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECC---CCHHHHHHcC------
Confidence            34679999999988544 499999999999  99999999999999999999999999999   5566999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |++.||+++|++|+.    .....|.++.+.|.+++.+.
T Consensus        87 V~siPTlilFkdG~~----v~~~vG~~~k~~l~~~l~~~  121 (137)
T 2qsi_A           87 VAVCPSLAVVQPERT----LGVIAKIQDWSSYLAQIGAM  121 (137)
T ss_dssp             CCSSSEEEEEECCEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CccCCEEEEEECCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            999999999999987    56778999999999999876

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.71  E-value=4.3e-18  Score=138.26  Aligned_cols=69  Identities=28%  Similarity=0.521  Sum_probs=63.9

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      ..|||+||||+++++.++||+|||+|+++||||+++   .+.++|++|++||++|+||.+|+.||.+|+.+.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            469999999999999999999999999999999986   367889999999999999999999999998753

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.71  E-value=1.1e-17  Score=141.12  Aligned_cols=105  Identities=15%  Similarity=0.216  Sum_probs=92.3

Q ss_pred             cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .+.|++|+.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+.+.+.|+.|||+++   .+++++++      
T Consensus        21 ~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~---~~l~~~~~------   91 (128)
T 2o8v_B           21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYG------   91 (128)
T ss_dssp             CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTC---CTTSGGGT------
T ss_pred             ccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCC---HHHHHHcC------
Confidence            3447999999999655 7889999999999999999999999999999988899999999954   45899999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |.++||+++|.+|+.    ...+.|..+.+.|.+|+.+.
T Consensus        92 v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  126 (128)
T 2o8v_B           92 IRGIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  126 (128)
T ss_dssp             CCSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCccCEEEEEeCCEE----EEEEcCCCCHHHHHHHHHHh
Confidence            999999999977765    45688999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.71  E-value=2.6e-17  Score=157.55  Aligned_cols=103  Identities=17%  Similarity=0.288  Sum_probs=93.8

Q ss_pred             eeeEeccCCcccccCC--CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          137 AFNVVTSEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~--~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      .|+++|.++|++++..  +++++|.||+|||++|+.+.|.|+++++++.+.+.|++|||+   ....+|++|+      |
T Consensus         8 ~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------v   78 (287)
T 3qou_A            8 NIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCD---AEQMIAAQFG------L   78 (287)
T ss_dssp             TEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETT---TCHHHHHTTT------C
T ss_pred             ccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCc---cCHHHHHHcC------C
Confidence            4799999999998843  899999999999999999999999999999988999999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +++||+++|.+|+.    ...|.|..+.+.+.+|+.+.
T Consensus        79 ~~~Pt~~~~~~G~~----~~~~~g~~~~~~l~~~l~~~  112 (287)
T 3qou_A           79 RAIPTVYLFQNGQP----VDGFQGPQPEEAIRALLDXV  112 (287)
T ss_dssp             CSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCEE----EEEeeCCCCHHHHHHHHHHH
Confidence            99999999988865    45789999999999999887

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=2.5e-17  Score=139.04  Aligned_cols=107  Identities=17%  Similarity=0.268  Sum_probs=91.5

Q ss_pred             cceeeEeccCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          135 VHAFNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      .+.|.+|+.++|++.+. ++++++|.||++||++|+.+.|.|+++++.+.  +.+.++.|||+++   ..++++|+    
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~----   78 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN---DITNDQYK----   78 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS---CCCCSSCC----
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC---HHHHhhcC----
Confidence            34589999999999884 58999999999999999999999999999998  4589999999954   44788888    


Q ss_pred             ccccCccEEEEeCCCCCCCCCccccc-CCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~-G~~~~~~l~~fi~~~  252 (423)
                        |.++||+++|.+|...  ....|. |.++.+.|.+|+.+.
T Consensus        79 --v~~~Pt~~~~~~g~~~--~~~~~~gg~~~~~~l~~~l~~~  116 (133)
T 2dj3_A           79 --VEGFPTIYFAPSGDKK--NPIKFEGGNRDLEHLSKFIDEH  116 (133)
T ss_dssp             --CSSSSEEEEECTTCTT--SCEECCSSCCSTTHHHHHHHHH
T ss_pred             --CCcCCEEEEEeCCCcc--cceEecCCCcCHHHHHHHHHHh
Confidence              9999999999987642  123577 568999999999988

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.70  E-value=2.4e-17  Score=140.72  Aligned_cols=105  Identities=15%  Similarity=0.177  Sum_probs=91.4

Q ss_pred             cceeeEeccCCcccccC------------CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHH
Q 014549          135 VHAFNVVTSEDFPSIFH------------DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL  202 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~------------~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l  202 (423)
                      .+.|++|+.++|.+.+.            .+++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....+
T Consensus        21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~   97 (141)
T 3hxs_A           21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVD---KEPEL   97 (141)
T ss_dssp             --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHH
T ss_pred             CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECC---CCHHH
Confidence            34578999999998773            4799999999999999999999999999999988999999999   44569


Q ss_pred             HhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          203 AERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       203 ~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |++|+      |.++||+++|.+++.    ...|.|.++.+.|.+|+.+.
T Consensus        98 ~~~~~------v~~~Pt~~~~~~~g~----~~~~~G~~~~~~l~~~l~~~  137 (141)
T 3hxs_A           98 ARDFG------IQSIPTIWFVPMKGE----PQVNMGALSKEQLKGYIDKV  137 (141)
T ss_dssp             HHHTT------CCSSSEEEEECSSSC----CEEEESCCCHHHHHHHHHHT
T ss_pred             HHHcC------CCCcCEEEEEeCCCC----EEEEeCCCCHHHHHHHHHHH
Confidence            99999      999999999965544    34788999999999999876

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.70  E-value=4.5e-18  Score=144.80  Aligned_cols=103  Identities=9%  Similarity=0.092  Sum_probs=94.1

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCC--CccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapw--C~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      +..+|+++|++.|.++.++||.||++|  |++|+.++|.++++|+++.|. ++|++||.+   .+++++.+|+      |
T Consensus        19 ~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvD---e~~~lA~~yg------V   89 (140)
T 2qgv_A           19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLE---QSEAIGDRFG------A   89 (140)
T ss_dssp             CEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHH---HHHHHHHHHT------C
T ss_pred             CccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECC---CCHHHHHHcC------C
Confidence            467999999998888889999999999  999999999999999999999 999999999   5566999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                      ++.||+++|++|+.    .....|..+.+.|.+|+.+.+
T Consensus        90 ~sIPTlilFk~G~~----v~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           90 FRFPATLVFTGGNY----RGVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             CSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHHH
T ss_pred             ccCCEEEEEECCEE----EEEEecCCCHHHHHHHHHHHh
Confidence            99999999999987    467789999999999998773

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.5e-17  Score=133.97  Aligned_cols=69  Identities=23%  Similarity=0.344  Sum_probs=62.7

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      ....|||+||||+++++.++||+|||+|+++||||++++   +.++|++|++||++|+||.+|+.||.+...
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            347799999999999999999999999999999999863   577899999999999999999999986443

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.70  E-value=1.7e-17  Score=134.34  Aligned_cols=102  Identities=15%  Similarity=0.216  Sum_probs=91.1

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.++|.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....++++++      |.+
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------v~~   73 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD---ESPNVASEYG------IRS   73 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHHT------CCS
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECC---CCHHHHHHCC------CCc
Confidence            6789999999866 67899999999999999999999999999999888999999999   4456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|+.    ...+.|..+.+.|.+++.+.
T Consensus        74 ~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  105 (107)
T 1dby_A           74 IPTIMVFKGGKK----CETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             SCEEEEESSSSE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            999999988865    45678999999999999775

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.70  E-value=3.2e-17  Score=139.47  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             cceeeEeccCCcccccC------------CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHH
Q 014549          135 VHAFNVVTSEDFPSIFH------------DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL  202 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~------------~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l  202 (423)
                      ...|++||.++|.+.+.            ++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....+
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~---~~~~l   84 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTE---KEQEL   84 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCC---CCHHH
Confidence            34578999999998773            4689999999999999999999999999999888999999999   44569


Q ss_pred             HhhCCCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          203 AERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       203 ~~~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |++++      |.++||+++| .+|+.     ..|.|..+.+.|.+|+.+.
T Consensus        85 ~~~~~------v~~~Pt~~~~~~~G~~-----~~~~G~~~~~~l~~~l~~~  124 (136)
T 2l5l_A           85 AGAFG------IRSIPSILFIPMEGKP-----EMAQGAMPKASFKKAIDEF  124 (136)
T ss_dssp             HHHTT------CCSSCEEEEECSSSCC-----EEEESCCCHHHHHHHHHHH
T ss_pred             HHHcC------CCCCCEEEEECCCCcE-----EEEeCCCCHHHHHHHHHHH
Confidence            99999      9999999999 66654     2688999999999999887

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.70  E-value=1.5e-17  Score=137.81  Aligned_cols=106  Identities=17%  Similarity=0.192  Sum_probs=92.5

Q ss_pred             CcceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          134 SVHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       134 ~~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      ..+.|.+|+.++|.+.+ +++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....+|++++     
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~-----   81 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD---TNPETARNFQ-----   81 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHTT-----
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC---CCHHHHHhcC-----
Confidence            34558999999998655 77899999999999999999999999999999888999999999   4456999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|+.    ...+.|..+.+.|.+|+.+.
T Consensus        82 -i~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           82 -VVSIPTLILFKDGQP----VKRIVGAKGKAALLRELSDV  116 (121)
T ss_dssp             -CCSSSEEEEEETTEE----EEEEESCCCHHHHHHHTCSC
T ss_pred             -CCcCCEEEEEECCEE----EEEecCCCCHHHHHHHHHHH
Confidence             999999999988765    45688999999999998765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.70  E-value=9.6e-18  Score=138.83  Aligned_cols=100  Identities=10%  Similarity=0.130  Sum_probs=89.1

Q ss_pred             eeEeccCCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          138 FNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       138 v~~L~~~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      ....|.++|++.+.  ++++++|.||++||++|+++.|.|+++++.+.+ +.|+.|||+   ....++++|+      |.
T Consensus        14 ~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d---~~~~l~~~~~------v~   83 (116)
T 3qfa_C           14 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVD---DCQDVASECE------VK   83 (116)
T ss_dssp             BCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETT---TTHHHHHHTT------CC
T ss_pred             cCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC---CCHHHHHHcC------Cc
Confidence            35578889999996  899999999999999999999999999999887 999999999   4556999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|+.    ...+.|. +.+.|.+|+.+.
T Consensus        84 ~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           84 SMPTFQFFKKGQK----VGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             SSSEEEEESSSSE----EEEEESC-CHHHHHHHHHHH
T ss_pred             cccEEEEEeCCeE----EEEEcCC-CHHHHHHHHHHh
Confidence            9999999988865    4568898 999999999765

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.70  E-value=2.1e-17  Score=137.21  Aligned_cols=106  Identities=17%  Similarity=0.258  Sum_probs=93.3

Q ss_pred             CcceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          134 SVHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       134 ~~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      .-+.|..++.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....++++++     
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d---~~~~l~~~~~-----   82 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID---DHTDLAIEYE-----   82 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETT---TTHHHHHHTT-----
T ss_pred             CceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC---CCHHHHHHcC-----
Confidence            34458999999999865 77899999999999999999999999999999888999999999   4456999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|++|+.    ...|.|.++.+.|.+|+.+.
T Consensus        83 -v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  117 (119)
T 1w4v_A           83 -VSAVPTVLAMKNGDV----VDKFVGIKDEDQLEAFLKKL  117 (119)
T ss_dssp             -CCSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             -CCcccEEEEEeCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence             999999999987765    34688999999999999765

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.70  E-value=3e-17  Score=132.17  Aligned_cols=102  Identities=14%  Similarity=0.203  Sum_probs=90.6

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.++|.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+   ....+|++++      |.+
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------v~~   72 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD---EAPGIATQYN------IRS   72 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHTT------CCS
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCc---chHHHHHhCC------CCc
Confidence            5789999999866 67899999999999999999999999999999888999999999   4456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|++|+.    ...+.|..+.+.+.+++.+.
T Consensus        73 ~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           73 IPTVLFFKNGER----KESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             SSEEEEEETTEE----EEEEEECCCHHHHHHHHHHH
T ss_pred             ccEEEEEeCCeE----EEEEecCCCHHHHHHHHHhh
Confidence            999999988765    34678999999999999764

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.69  E-value=4.8e-17  Score=152.49  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=91.1

Q ss_pred             cceeeEeccCCcccccCCCCcEEEEEe--cCCCccccccHHHHHHHHHHhhc---cceEEEEEccc--chhhhHHHhhCC
Q 014549          135 VHAFNVVTSEDFPSIFHDSKPWLIQVY--SDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGD--IRLATHLAERKP  207 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~~~~~~lV~FY--apwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~--~~~~~~l~~~~~  207 (423)
                      .+.|++||..||+++++++.+|||.||  ||||+    +.|.|+++|+.+.+   .+.|++|||++  ...+.++|++|+
T Consensus        15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~   90 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   90 (248)
T ss_dssp             CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence            344799999999998888999999999  99999    99999999999964   58999999995  112567999999


Q ss_pred             CCcccccc--CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          208 IGQIFFRR--GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       208 ~~~~~~i~--~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                            |+  +||||++|+ |..  ..+..|  .|.++.++|.+|+.+.
T Consensus        91 ------V~~~~~PTl~~F~-G~~--~~~~~y~~~G~~~~~~L~~fi~~~  130 (248)
T 2c0g_A           91 ------VDDKNFPSIFLFK-GNA--DEYVQLPSHVDVTLDNLKAFVSAN  130 (248)
T ss_dssp             ------CCTTSCCEEEEES-SSS--SSEEECCTTSCCCHHHHHHHHHHH
T ss_pred             ------CCcCCCCeEEEEe-CCc--CcceeecccCCCCHHHHHHHHHHh
Confidence                  99  999999999 862  125688  8999999999999987

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.69  E-value=1.2e-17  Score=133.32  Aligned_cols=67  Identities=21%  Similarity=0.450  Sum_probs=61.4

Q ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---------hHHHHHHHHHHHHHcCChhhHhhhhhcCC
Q 014549           35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---------STADFLKIQYAYELLTDPLWKRNYDVYGI  101 (423)
Q Consensus        35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---------~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~  101 (423)
                      ...|||+||||+++++.++||+|||+|+++||||+++.         +.++|++|++||++|+||.+|+.||.+..
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            36799999999999999999999999999999999752         46789999999999999999999998754

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.68  E-value=2.6e-17  Score=137.95  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=85.0

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCc--------------cccccHHHHHHHHHHhhccceEEEEEcccchhhhH
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSY--------------LCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH  201 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~--------------~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~  201 (423)
                      .|++|+.++|++.+ +++++++|.||+|||+              +|+.+.|.|+++++.+.+.+.+++|||+++   ..
T Consensus         4 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~---~~   80 (123)
T 1oaz_A            4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQN---PG   80 (123)
T ss_dssp             SCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSC---TT
T ss_pred             ccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCC---HH
Confidence            47899999998654 7899999999999999              999999999999999988899999999954   45


Q ss_pred             HHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       202 l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++++|+      |+++||+++|.+|+.    ...+.|.++.++|.+|+.+.
T Consensus        81 l~~~~~------v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           81 TAPKYG------IRGIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  121 (123)
T ss_dssp             TGGGGT------CCBSSEEEEEESSSE----EEEEESCCCHHHHHHHHTTT
T ss_pred             HHHHcC------CCccCEEEEEECCEE----EEEEeCCCCHHHHHHHHHHH
Confidence            999999      999999999987765    45688999999999998764

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.68  E-value=1.4e-17  Score=136.64  Aligned_cols=70  Identities=26%  Similarity=0.301  Sum_probs=63.8

Q ss_pred             CCcccccccccccCCC-CHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           34 SFPPSHYDALGIKPYS-SVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a-~~~~ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ....|||++|||++++ +.++||+|||++++++|||++++      +.++|++|++||++|+||.+|..||.+|...
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            3467999999999999 99999999999999999999864      5678999999999999999999999987654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.68  E-value=7.4e-17  Score=135.70  Aligned_cols=98  Identities=11%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      ++.+.++....++++++|.||++||++|+++.|.|+++++.+.+.+.++.|||+   ....++++++      |.++||+
T Consensus        30 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d---~~~~l~~~~~------v~~~Pt~  100 (128)
T 3ul3_B           30 NGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLD---KNESLARKFS------VKSLPTI  100 (128)
T ss_dssp             CCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGG---GCHHHHHHTT------CCSSSEE
T ss_pred             CCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECC---CCHHHHHHcC------CCCcCEE
Confidence            444445566688999999999999999999999999999999988999999999   4456999999      9999999


Q ss_pred             EEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      ++|.+|+.    ...+.|.++.++|.+|+.+
T Consensus       101 ~~~~~G~~----~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          101 ILLKNKTM----LARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEEETTEE----EEEESSCCCHHHHHHHHTT
T ss_pred             EEEECCEE----EEEecCCCCHHHHHHHHHh
Confidence            99987765    4578899999999999864

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.68  E-value=9.8e-17  Score=131.11  Aligned_cols=104  Identities=13%  Similarity=0.155  Sum_probs=89.0

Q ss_pred             cceeeEeccCCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          135 VHAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      .+.|.+|+.++|++.+.  ++++++|.||++||++|+.+.|.|+++++.+.+ +.++.|||++.  ...++++++     
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~--~~~~~~~~~-----   75 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELG-----   75 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHC-----
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcc--hHHHHHHcC-----
Confidence            34589999999999885  589999999999999999999999999999875 89999999821  245999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||++++++|+.    ...+.|.. .+.|.+++.+.
T Consensus        76 -v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  109 (111)
T 2pu9_C           76 -IRVVPTFKILKENSV----VGEVTGAK-YDKLLEAIQAA  109 (111)
T ss_dssp             -CSBSSEEEEESSSSE----EEEEESSC-HHHHHHHHHHH
T ss_pred             -CCeeeEEEEEeCCcE----EEEEcCCC-HHHHHHHHHHh
Confidence             999999999998875    34677874 88999998765

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.67  E-value=6e-17  Score=136.14  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=89.1

Q ss_pred             eeEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.+|+. ++|++.+.++++++|.||++||++|+.+.|.|+++++.+. .+.|+.|||+   ...++|++++      |.+
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d---~~~~l~~~~~------v~~   90 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDAD---NNSEIVSKCR------VLQ   90 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETT---TCHHHHHHTT------CCS
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECC---CCHHHHHHcC------CCc
Confidence            788999 9999999889999999999999999999999999999984 4899999999   4456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|..    ...+.| .+.+.|.+|+.+.
T Consensus        91 ~Pt~~i~~~G~~----~~~~~G-~~~~~l~~~l~~~  121 (125)
T 1r26_A           91 LPTFIIARSGKM----LGHVIG-ANPGMLRQKLRDI  121 (125)
T ss_dssp             SSEEEEEETTEE----EEEEES-SCHHHHHHHHHHH
T ss_pred             ccEEEEEeCCeE----EEEEeC-CCHHHHHHHHHHH
Confidence            999999988865    446778 6889999999876

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.3e-17  Score=141.95  Aligned_cols=104  Identities=16%  Similarity=0.280  Sum_probs=88.6

Q ss_pred             ceeeEeccCCcccccCC--CCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~--~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +.|.++|.++|++.+..  .++++|.||++||++|+.+.|.|+++++++.+ .+.|+.|||+   ....+|++++     
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~---~~~~~~~~~~-----   78 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG---RYTDVSTRYK-----   78 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTT---TCHHHHHHTT-----
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCc---cCHHHHHHcc-----
Confidence            34789999999998833  44999999999999999999999999999986 6899999999   4456999999     


Q ss_pred             ccc------CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRR------GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~------~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.      ++||+++|.+|+.    ...+.|..+.+.|.+|+.+.
T Consensus        79 -v~~~~~~~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           79 -VSTSPLTKQLPTLILFQGGKE----AMRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             -CCCCSSSSCSSEEEEESSSSE----EEEESCBCSSSCBCCCCCCH
T ss_pred             -CcccCCcCCCCEEEEEECCEE----EEEecCcCchHHHHHHHhcc
Confidence             87      9999999988865    45678888888887777543

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.67  E-value=1.5e-16  Score=136.92  Aligned_cols=102  Identities=11%  Similarity=0.103  Sum_probs=78.0

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCC--CccccccHHHHHHHHHHhhccce--EEEEEcccchhhhHHHhhCCCCcccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIAN--TGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapw--C~~C~~~~p~~~~~A~~l~~~~~--~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      +..||.++|++.+.+...++|.||++|  |++|+.+.|.|+++++++ +.+.  |++||++   ...+++++|+      
T Consensus        19 ~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d---~~~~la~~~~------   88 (142)
T 2es7_A           19 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLE---QSEAIGDRFN------   88 (142)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHH---HHHHHHHTTT------
T ss_pred             CcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECC---CCHHHHHhcC------
Confidence            578999999999987778999999987  999999999999999999 7788  9999999   5566999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                      |+++||+++|++|+.    ...+.|.++.+.|.+|+.+.+
T Consensus        89 V~~iPT~~~fk~G~~----v~~~~G~~~~~~l~~~i~~~l  124 (142)
T 2es7_A           89 VRRFPATLVFTDGKL----RGALSGIHPWAELLTLMRSIV  124 (142)
T ss_dssp             CCSSSEEEEESCC--------CEESCCCHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEeCCEE----EEEEeCCCCHHHHHHHHHHHh
Confidence            999999999998876    457889999999999998873

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.67  E-value=1.1e-16  Score=129.80  Aligned_cols=100  Identities=13%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             eeEe-ccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVV-TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L-~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |.++ +.++|++.+  .++++++|.||+|||++|+.+.|.|+++++.+ +.+.++.||++   ....++++++      |
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~---~~~~~~~~~~------v   72 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVH---QCQGTAATNN------I   72 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETT---TSHHHHHHTT------C
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECc---cCHHHHHhcC------C
Confidence            4556 568899988  57899999999999999999999999999998 45899999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .++||+++|.+|+.    ...+.|.. .++|.+|+.+.
T Consensus        73 ~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  105 (107)
T 1gh2_A           73 SATPTFQFFRNKVR----IDQYQGAD-AVGLEEKIKQH  105 (107)
T ss_dssp             CSSSEEEEEETTEE----EEEEESSC-HHHHHHHHHHH
T ss_pred             CcccEEEEEECCeE----EEEEeCCC-HHHHHHHHHHh
Confidence            99999999988865    34677854 56699998765

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.67  E-value=7.4e-17  Score=130.10  Aligned_cols=101  Identities=14%  Similarity=0.201  Sum_probs=88.6

Q ss_pred             eeEecc-CCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTS-EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~-~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |.+|++ ++|++.+.  ++++++|.||++||++|+.+.|.++++++.+++.+.++.|||+   ....++++++      |
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------v   72 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD---ECEDIAMEYN------I   72 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT---TCHHHHHHTT------C
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEecc---chHHHHHHcC------C
Confidence            567888 88998885  7899999999999999999999999999999877999999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .++||+++|.+|+.    ...+.| .+.++|.+|+.+.
T Consensus        73 ~~~Pt~~~~~~G~~----~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           73 SSMPTFVFLKNGVK----VEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             CSSSEEEEEETTEE----EEEEES-CCHHHHHHHHHHT
T ss_pred             CcccEEEEEcCCcE----EEEEcC-CCHHHHHHHHHHh
Confidence            99999999988865    456778 7889999998764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.66  E-value=1.4e-15  Score=142.71  Aligned_cols=194  Identities=11%  Similarity=0.095  Sum_probs=134.6

Q ss_pred             Cccccc-CCCCcEEEEEecCC--CccccccHHHHHHHHHHh---hcc--ceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          145 DFPSIF-HDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALL---EGI--ANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       145 nf~~~v-~~~~~~lV~FYapw--C~~C~~~~p~~~~~A~~l---~~~--~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .|.+++ +-..+++|.||++|  |++|+.+.|.++++|+..   +|.  +.|+.+||+   .+..+|++|+      |++
T Consensus        16 ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d---~~~~~~~~~g------v~~   86 (243)
T 2hls_A           16 ELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRE---SDSDKFSEFK------VER   86 (243)
T ss_dssp             HHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETT---TTHHHHHHTT------CCS
T ss_pred             HHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCC---cCHHHHHhcC------CCc
Confidence            454555 34679999999999  999999999999999883   444  899999999   4556999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhc-cCCceeecccchhhhhhhhhcCCCceEEEEEecC-CCC--C
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT-GER--A  292 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~-~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~-~~~--~  292 (423)
                      +||+++| +| .     ..|.|.++.+.+..|+..... ..+... ++ ++..+. +.......+++.|+++. +.|  .
T Consensus        87 ~Pt~~i~-~g-~-----~~~~G~~~~~~l~~fv~~~l~~~~~~~~-l~-~~~~~~-~~~~~~~~~vv~F~a~wC~~C~~~  156 (243)
T 2hls_A           87 VPTVAFL-GG-E-----VRWTGIPAGEEIRALVEVIMRLSEDESG-LE-DATKEA-LKSLKGRVHIETIITPSCPYCPYA  156 (243)
T ss_dssp             SSEEEET-TT-T-----EEEESCCCTTHHHHHHHHHHHHHTTCCC-CC-HHHHHH-HHHCCSCEEEEEEECSSCSSHHHH
T ss_pred             CCEEEEE-CC-c-----eeEcCCCcHHHHHHHHHHHHhccCCCCC-CC-HHHHHH-HHHcCCCcEEEEEECCCCCCcHHH
Confidence            9999999 55 3     489998888889998876521 111111 22 221222 22221122355566643 233  3


Q ss_pred             chHHHHHHHhcc----ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          293 SPFVRQISRNYW----AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       293 ~~~~~~~a~~~~----~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      .|.+..++..+.    ..+.++.+...  ..++++++|+|.++||+++  + +.  +.|.|..+.+.|.+||.+..
T Consensus       157 ~p~l~~la~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~V~~vPt~~i--~-G~--~~~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          157 VLLAHMFAYEAWKQGNPVILSEAVEAY--ENPDIADKYGVMSVPSIAI--N-GY--LVFVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEEEETT--TCHHHHHHTTCCSSSEEEE--T-TE--EEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccCCcEEEEEEECc--cCHHHHHHcCCeeeCeEEE--C-CE--EEEeCCCCHHHHHHHHHHHh
Confidence            566677777762    34566666432  2367899999999999988  3 22  34899999999999998853

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.66  E-value=1.1e-16  Score=130.77  Aligned_cols=99  Identities=15%  Similarity=0.249  Sum_probs=86.7

Q ss_pred             eEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCcc
Q 014549          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       139 ~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P  218 (423)
                      ...+.++|++.+.++++++|.||++||++|+.+.|.|+++++.+.+ +.+..|||+   ....++++++      |.++|
T Consensus        10 ~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~---~~~~l~~~~~------v~~~P   79 (109)
T 3f3q_A           10 QFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVD---ELGDVAQKNE------VSAMP   79 (109)
T ss_dssp             ECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT---TCHHHHHHTT------CCSSS
T ss_pred             CCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECC---CCHHHHHHcC------CCccC
Confidence            4467789999999999999999999999999999999999999866 899999999   4556999999      99999


Q ss_pred             EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       219 ti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |+++|.+|+.    ...+.|. +.+.|.+++.+.
T Consensus        80 t~~~~~~G~~----~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           80 TLLLFKNGKE----VAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEEECCEE----EEEEeCC-CHHHHHHHHHhh
Confidence            9999997765    4567788 679999998764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.66  E-value=1.7e-16  Score=147.51  Aligned_cols=103  Identities=21%  Similarity=0.317  Sum_probs=93.6

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +.+..++.++|++.+.++++++|.||++||++|+.+.|.|+++|+.+.+.   +.++.|||+   ...++|++++     
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~---~~~~l~~~~~-----  201 (241)
T 3idv_A          130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT---AETDLAKRFD-----  201 (241)
T ss_dssp             CSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETT---TCHHHHHHTT-----
T ss_pred             ccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECC---CCHHHHHHcC-----
Confidence            34688999999999988899999999999999999999999999999765   899999999   4556999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|+.     ..|.|.++.++|.+|+.+.
T Consensus       202 -v~~~Pt~~~~~~g~~-----~~~~g~~~~~~l~~~l~~~  235 (241)
T 3idv_A          202 -VSGYPTLKIFRKGRP-----YDYNGPREKYGIVDYMIEQ  235 (241)
T ss_dssp             -CCSSSEEEEEETTEE-----EECCSCCSHHHHHHHHHHH
T ss_pred             -CcccCEEEEEECCeE-----EEecCCCCHHHHHHHHHhh
Confidence             999999999998865     3699999999999999987

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.66  E-value=5.7e-17  Score=132.38  Aligned_cols=101  Identities=16%  Similarity=0.235  Sum_probs=88.8

Q ss_pred             eeEe-ccCCcccccCC----CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          138 FNVV-TSEDFPSIFHD----SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       138 v~~L-~~~nf~~~v~~----~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      |.++ +.++|++.+..    +++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||+   ....++++++     
T Consensus         4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~-----   75 (112)
T 1ep7_A            4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD---AVAAVAEAAG-----   75 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TTHHHHHHHT-----
T ss_pred             EEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECC---chHHHHHHcC-----
Confidence            6778 45889998854    899999999999999999999999999999878999999999   4556999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|++|..    ...+.|. +.+.|.+|+.+.
T Consensus        76 -v~~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  109 (112)
T 1ep7_A           76 -ITAMPTFHVYKDGVK----ADDLVGA-SQDKLKALVAKH  109 (112)
T ss_dssp             -CCBSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             -CCcccEEEEEECCeE----EEEEcCC-CHHHHHHHHHHH
Confidence             999999999988865    3467898 899999999876

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.66  E-value=1e-16  Score=148.17  Aligned_cols=106  Identities=16%  Similarity=0.263  Sum_probs=94.7

Q ss_pred             cceeeEeccCCcccc-cCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          135 VHAFNVVTSEDFPSI-FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~-v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .+.+..||.++|++. ++++++++|.||++||++|+.+.|.|+++++.+.+.+.|+.|||+++   ..+|++|+      
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~l~~~~~------   81 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYG------   81 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC---TTTGGGGT------
T ss_pred             CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCC---HHHHHHcC------
Confidence            345788999999975 58899999999999999999999999999999998899999999944   45899999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                      |.++||+++|.+|+.    ...+.|.++.+.|.+|+.+.+
T Consensus        82 v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~l  117 (222)
T 3dxb_A           82 IRGIPTLLLFKNGEV----AATKVGALSKGQLKEFLDANL  117 (222)
T ss_dssp             CCSBSEEEEEETTEE----EEEEESCCCHHHHHHHHHHHS
T ss_pred             CCcCCEEEEEECCeE----EEEeccccChHHHHHHHHhhc
Confidence            999999999998865    457889999999999999883

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.66  E-value=1.5e-16  Score=135.89  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      ..|.+|+.++|++.+..++.++|.||++||++|+.+.|.|+++++.+.+.+.|+.|||+   ....++++|+      |.
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~---~~~~l~~~~~------v~  103 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVD---EHPGLAARYG------VR  103 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT---TCHHHHHHTT------CC
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECC---CCHHHHHHCC------CC
Confidence            34788999999988744434999999999999999999999999999888999999999   4456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|..    ...|.|..+.+.|.+|+.+.
T Consensus       104 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~  136 (140)
T 1v98_A          104 SVPTLVLFRRGAP----VATWVGASPRRVLEERLRPY  136 (140)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ccCEEEEEeCCcE----EEEEeCCCCHHHHHHHHHHH
Confidence            9999999988865    35688999999999999876

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.3e-16  Score=130.48  Aligned_cols=101  Identities=9%  Similarity=0.125  Sum_probs=84.4

Q ss_pred             eeEecc-CCcccccCC---CCcEEEEEecCCCccccccHHHHHHHHHHhh-ccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          138 FNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       138 v~~L~~-~nf~~~v~~---~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      |.+|+. ++|++.+.+   +++++|.||++||++|+.+.|.|+++++.++ +.+.++.|||+   ....++++++     
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~-----   73 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD---ENSEISELFE-----   73 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETT---TCHHHHHHTT-----
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecc---cCHHHHHHcC-----
Confidence            678888 899998865   8999999999999999999999999999863 34899999999   4456999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|+.    ...+.|.. .++|.+++.+.
T Consensus        74 -v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  107 (112)
T 3d6i_A           74 -ISAVPYFIIIHKGTI----LKELSGAD-PKEYVSLLEDC  107 (112)
T ss_dssp             -CCSSSEEEEEETTEE----EEEECSCC-HHHHHHHHHHH
T ss_pred             -CCcccEEEEEECCEE----EEEecCCC-HHHHHHHHHHH
Confidence             999999999988765    45677874 56799999776

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.66  E-value=7.4e-17  Score=139.13  Aligned_cols=106  Identities=11%  Similarity=0.068  Sum_probs=87.7

Q ss_pred             eeEecc-CCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVVTS-EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~-~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |.+|+. ++|++.|  .++++++|.|||+||++|+.+.|.++++|+++.+.+.|++||.+++   ++++++|+      |
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~---~e~a~~y~------V   93 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEV---PDFNTMYE------L   93 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC---CTTTTTTT------C
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCC---HHHHHHcC------C
Confidence            455665 7898877  4789999999999999999999999999999998899999999944   55999999      9


Q ss_pred             cCccEEEEeCCCCCCC-C----CcccccCCCC-HHHHHHHHHHh
Q 014549          215 RGLPSLVAFPPGCKSS-D----CMTRFEGELS-VDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~-~----~~~~y~G~~~-~~~l~~fi~~~  252 (423)
                      .+.||+++|.+|+... +    +.....|..+ .+.|.+++...
T Consensus        94 ~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~  137 (160)
T 2av4_A           94 YDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI  137 (160)
T ss_dssp             CSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence            9999999999997610 0    0015678776 88899998766

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.65  E-value=1.8e-16  Score=147.99  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=90.2

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEec--CCCccccccHHHHHHHHHHhhc--cceEEEEEccc--chhhhHHHhhCCCCc
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYS--DGSYLCGQFSGAWKTIAALLEG--IANTGMVELGD--IRLATHLAERKPIGQ  210 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYa--pwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~--~~~~~~l~~~~~~~~  210 (423)
                      .|++||..||+++|+++++|||.|||  |||+    +.|.|+++|+.+.+  .+.|++|||++  ...+.++|++|+   
T Consensus         6 ~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~---   78 (240)
T 2qc7_A            6 GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK---   78 (240)
T ss_dssp             TCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT---
T ss_pred             CceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC---
Confidence            47899999999999888999999999  9999    99999999999974  58999999542  114567999999   


Q ss_pred             ccccc--CccEEEEeCCCC-CCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRR--GLPSLVAFPPGC-KSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~--~~Pti~~f~~g~-~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |+  +||||++|++|. ..   +..|.|.++.++|++|+.+.
T Consensus        79 ---V~~~~~PTl~~f~~G~~~~---~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           79 ---LDKESYPVFYLFRDGDFEN---PVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             ---CCGGGCSEEEEEETTCSSC---CEECCSCSCHHHHHHHHHHT
T ss_pred             ---CCCCCCCEEEEEeCCCcCc---ceeecCCCCHHHHHHHHHHh
Confidence               99  999999999997 22   56899999999999999987

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.65  E-value=8.5e-17  Score=131.89  Aligned_cols=102  Identities=11%  Similarity=0.213  Sum_probs=89.9

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      +....++.++|++.++++++++|.||++||++|+.+.|.++++++.+.+ +.++.||++   ....++++++      |.
T Consensus         9 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~---~~~~~~~~~~------v~   78 (112)
T 1syr_A            9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVD---EVSEVTEKEN------IT   78 (112)
T ss_dssp             CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT---TTHHHHHHTT------CC
T ss_pred             eEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECC---CCHHHHHHcC------CC
Confidence            4457789999999998899999999999999999999999999998864 899999999   4456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|..    ...+.|. +.+.|.+|+.+.
T Consensus        79 ~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           79 SMPTFKVYKNGSS----VDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             SSSEEEEEETTEE----EEEEESC-CHHHHHHHHHTT
T ss_pred             cccEEEEEECCcE----EEEEeCC-CHHHHHHHHHHh
Confidence            9999999988765    3467898 999999999764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.65  E-value=1.3e-16  Score=128.65  Aligned_cols=96  Identities=11%  Similarity=0.190  Sum_probs=84.5

Q ss_pred             ccCCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccE
Q 014549          142 TSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       142 ~~~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      +.++|++.+.  ++++++|.||++||++|+.+.|.|+++++.+.+ +.++.|||+   ....++++++      |.++||
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~---~~~~~~~~~~------v~~~Pt   76 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVD---DCQDVASESE------VKSMPT   76 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETT---TCHHHHHHTT------CCBSSE
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhh---hhHHHHHHcC------CCcCcE
Confidence            4567888885  789999999999999999999999999999877 899999999   4456999999      999999


Q ss_pred             EEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       220 i~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +++|.+|+.    ...+.|. +.+.|.+|+.+.
T Consensus        77 ~~~~~~g~~----~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           77 FQFFKKGQK----VGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             EEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEECCeE----EEEEeCC-CHHHHHHHHHHh
Confidence            999988865    4568898 999999999765

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.64  E-value=2.3e-15  Score=139.48  Aligned_cols=201  Identities=8%  Similarity=0.059  Sum_probs=148.0

Q ss_pred             eeEec-cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~-~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +++|+ .+++++.++++++++|-||++|   |..+.++|.++|+.+ ..+.||.+.      ..++|++++      +++
T Consensus        11 ~~~l~s~~~~~~~l~~~~v~vVgff~~~---~~~~~~~f~~~A~~l-~~~~F~~t~------~~~v~~~~~------v~~   74 (227)
T 4f9z_D           11 PTWLTDVPAAMEFIAATEVAVIGFFQDL---EIPAVPILHSMVQKF-PGVSFGIST------DSEVLTHYN------ITG   74 (227)
T ss_dssp             CEECCSHHHHHHHHHTSSEEEEEECSCS---CSTHHHHHHHHTTTC-TTSEEEEEC------CHHHHHHTT------CCS
T ss_pred             CeeeCCHHHHHHHHhcCCeEEEEEecCC---CchhHHHHHHHHHhC-CCceEEEEC------CHHHHHHcC------CCC
Confidence            46674 4889998999999999999998   568999999999999 478888754      234899999      888


Q ss_pred             ccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEec-CC-C
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK-TG-E  290 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~-~~-~  290 (423)
                       |+|++|+++...   ...|.|    .++.++|.+|+...  ..|....+|.++ ...+....  ....+++|.+ .+ +
T Consensus        75 -p~i~lfk~~~~~---~~~~~~~~~g~~~~~~l~~fi~~~--~~plv~e~t~~n-~~~~~~~~--~~~~~l~f~~~~~~~  145 (227)
T 4f9z_D           75 -NTICLFRLVDNE---QLNLEDEDIESIDATKLSRFIEIN--SLHMVTEYNPVT-VIGLFNSV--IQIHLLLIMNKASPE  145 (227)
T ss_dssp             -SEEEEEETTTTE---EEEECHHHHHTCCHHHHHHHHHHH--CCCSEEECCHHH-HHHHHHSS--CCEEEEEEECTTSTT
T ss_pred             -CeEEEEEecCcc---cccccccccCCCCHHHHHHHHHHh--CCCceeecCccc-HHHHhccC--CceEEEEEEcCCcch
Confidence             999999975432   457874    89999999999988  466666677655 34444332  1245555532 21 1


Q ss_pred             C--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCC--CCCeEEEecCCCcceeEe-cCCCChhHHHHHHHhh
Q 014549          291 R--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY-YGSFNNSRLSEVMEQN  363 (423)
Q Consensus       291 ~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~--~~Ptl~lfk~~~~~~~~y-~g~~~~~~l~~fi~~~  363 (423)
                      +  ..+.++.+|.+|++.+.|+.+...+.....+++.||+.  .+|+|+++...+.....+ .++++.+.|.+|++..
T Consensus       146 ~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~  223 (227)
T 4f9z_D          146 YEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGF  223 (227)
T ss_dssp             HHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHH
Confidence            1  23566778999999999999875433335678999998  699999997544433333 3778999999999874

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.64  E-value=6.6e-16  Score=129.19  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=88.7

Q ss_pred             eeEeccCCcc-----cccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE--cccchhhhHHHhhCCCCc
Q 014549          138 FNVVTSEDFP-----SIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE--LGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       138 v~~L~~~nf~-----~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd--c~~~~~~~~l~~~~~~~~  210 (423)
                      +..++..+|+     ....++++++|.||++||++|+.+.|.++++++.+.+.+.+..||  ++   ....++++++   
T Consensus         6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d---~~~~~~~~~~---   79 (126)
T 2l57_A            6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEE---KNIDLAYKYD---   79 (126)
T ss_dssp             SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSS---HHHHHHHHTT---
T ss_pred             cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCC---chHHHHHHcC---
Confidence            4567777777     555778999999999999999999999999999998779999999  88   5566999999   


Q ss_pred             cccccCccEEEEeC-CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |.++||+++|. +|+.    ...+.|..+.+.|.+|+.+.
T Consensus        80 ---v~~~Pt~~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  115 (126)
T 2l57_A           80 ---ANIVPTTVFLDKEGNK----FYVHQGLMRKNNIETILNSL  115 (126)
T ss_dssp             ---CCSSSEEEEECTTCCE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ---CcceeEEEEECCCCCE----EEEecCCCCHHHHHHHHHHH
Confidence               99999999999 5654    34678999999999999887

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.64  E-value=1.9e-16  Score=130.69  Aligned_cols=100  Identities=16%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             eeeEecc-CCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTS-EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~-~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|.+++. ++|++.+.  ++++++|.||++||++|+.+.|.|+++++.+  .+.++.|||+   ....++++++      
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~---~~~~~~~~~~------   82 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVD---KLEETARKYN------   82 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETT---TSHHHHHHTT------
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECC---ccHHHHHHcC------
Confidence            3788988 89998885  7899999999999999999999999999887  6899999999   4556999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |.++||+++|++|+.    ...+.| .+.+.|.+++.+.
T Consensus        83 v~~~Pt~~~~~~G~~----~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           83 ISAMPTFIAIKNGEK----VGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             CCSSSEEEEEETTEE----EEEEES-SCHHHHHHHHHHH
T ss_pred             CCccceEEEEeCCcE----EEEEeC-CCHHHHHHHHHHh
Confidence            999999999988865    446778 6889999998764

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.63  E-value=2.6e-16  Score=128.78  Aligned_cols=100  Identities=13%  Similarity=0.151  Sum_probs=87.2

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      +..++.++| +.+.++++++|.||++||++|+.+.|.|+++++.+. .+.++.||++   ...+++++++      |.++
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~---~~~~l~~~~~------v~~~   73 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSE---ARPELMKELG------FERV   73 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGG---GCHHHHHHTT------CCSS
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCc---CCHHHHHHcC------Cccc
Confidence            356788999 677778999999999999999999999999998875 5899999999   4556999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|.+|+.    ...+.|..+.+.|.+++.+.
T Consensus        74 Pt~~~~~~G~~----v~~~~G~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           74 PTLVFIRDGKV----AKVFSGIMNPRELQALYASI  104 (110)
T ss_dssp             CEEEEEESSSE----EEEEESCCCHHHHHHHHHTC
T ss_pred             CEEEEEECCEE----EEEEcCCCCHHHHHHHHHHH
Confidence            99999988865    45788999999999999765

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.63  E-value=3.9e-16  Score=130.10  Aligned_cols=103  Identities=14%  Similarity=0.182  Sum_probs=88.3

Q ss_pred             ceeeEeccCCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      +.|.+++.++|.+.+.  ++++++|.||++||++|+.+.|.|+++++.+.+ +.+..|||++.  ...++++++      
T Consensus        18 ~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~--~~~~~~~~~------   88 (124)
T 1faa_A           18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELG------   88 (124)
T ss_dssp             TSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHC------
T ss_pred             CceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcc--hHHHHHHcC------
Confidence            3478999999998884  689999999999999999999999999998875 79999999831  345999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |.++||+++|++|+.    ...+.|.. .++|.+++.+.
T Consensus        89 v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           89 IRVVPTFKILKENSV----VGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             CSSSSEEEEEETTEE----EEEEESSC-HHHHHHHHHHH
T ss_pred             CCeeeEEEEEeCCcE----EEEEcCCC-HHHHHHHHHHh
Confidence            999999999988865    34677876 89999998765

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.63  E-value=2.1e-16  Score=131.25  Aligned_cols=100  Identities=15%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             eeEeccCCcccccC----CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          138 FNVVTSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       138 v~~L~~~nf~~~v~----~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      +..++.++|++.+.    ++++++|.||++||++|+.+.|.|+++++.+.+ +.+..|||+   ....++++++      
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~---~~~~~~~~~~------   84 (122)
T 2vlu_A           15 ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVD---ELKPIAEQFS------   84 (122)
T ss_dssp             EEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT---TCHHHHHHTT------
T ss_pred             eeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECC---CCHHHHHHcC------
Confidence            56678899998883    589999999999999999999999999999887 899999999   4456999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |.++||+++|++|+.    ...+.|.. .+.|.+|+.+.
T Consensus        85 v~~~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~~  118 (122)
T 2vlu_A           85 VEAMPTFLFMKEGDV----KDRVVGAI-KEELTAKVGLH  118 (122)
T ss_dssp             CCSSSEEEEEETTEE----EEEEESSC-HHHHHHHHHHH
T ss_pred             CCcccEEEEEeCCEE----EEEEeCcC-HHHHHHHHHHH
Confidence            999999999988865    45688988 99999999876

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.63  E-value=1.3e-16  Score=135.77  Aligned_cols=102  Identities=16%  Similarity=0.198  Sum_probs=89.6

Q ss_pred             eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc------hhhhHHHhhCCCCc
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI------RLATHLAERKPIGQ  210 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~------~~~~~l~~~~~~~~  210 (423)
                      .+.++|.++|++.+.+  +++|.|||+||++|+.+.|.|+++++.+.  +.|+.|||++.      .....++++|+   
T Consensus        17 ~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~---   89 (135)
T 3emx_A           17 RLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAG---   89 (135)
T ss_dssp             EEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHT---
T ss_pred             ceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcC---
Confidence            4789999999999976  99999999999999999999999999886  89999999211      15667999999   


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |.++||+++|.+|+.    ...+.|..+.+.+.+++.+.
T Consensus        90 ---v~~~Pt~~~~~~G~~----v~~~~G~~~~~~~~~~i~~~  124 (135)
T 3emx_A           90 ---VEGTPTLVFYKEGRI----VDKLVGATPWSLKVEKAREI  124 (135)
T ss_dssp             ---CCSSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             ---CceeCeEEEEcCCEE----EEEEeCCCCHHHHHHHHHHH
Confidence               999999999998865    45788999999999999887

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.4e-16  Score=125.97  Aligned_cols=60  Identities=23%  Similarity=0.333  Sum_probs=56.2

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRN   95 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~   95 (423)
                      ..|||+||||+++++.++||+|||+|+++||||+++  ++.++|++|++||++|+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            579999999999999999999999999999999985  688899999999999999998864

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.62  E-value=4e-16  Score=125.29  Aligned_cols=99  Identities=12%  Similarity=0.260  Sum_probs=85.5

Q ss_pred             eEecc-CCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          139 NVVTS-EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       139 ~~L~~-~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .++++ ++|++.+.  ++++++|.||++||++|+.+.|.++++++.+. .+.++.|||+   ....++++++      |.
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~---~~~~~~~~~~------v~   71 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVD---QNEEAAAKYS------VT   71 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT---TCHHHHHHTT------CC
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEecc---CCHHHHHHcC------Cc
Confidence            45666 78988885  78999999999999999999999999999886 5899999999   4456999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|+.    ...+.| .+.+.|.+|+.+.
T Consensus        72 ~~Pt~~~~~~g~~----~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           72 AMPTFVFIKDGKE----VDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             SSSEEEEEETTEE----EEEEES-SCHHHHHHHHHHH
T ss_pred             cccEEEEEeCCcE----EEEEeC-CCHHHHHHHHHhh
Confidence            9999999988765    346778 6899999998764

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.62  E-value=2.1e-17  Score=145.06  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             CCcccccccccccCCCC--HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCC
Q 014549           34 SFPPSHYDALGIKPYSS--VEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGI  101 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~--~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~  101 (423)
                      +...|+|++|||+++|+  .++||+|||++++++|||++++ .++|++|++||++|+||.+|+.||++|.
T Consensus         8 ~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            44579999999999998  6999999999999999999854 6899999999999999999999999986

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.62  E-value=7.1e-17  Score=133.63  Aligned_cols=101  Identities=13%  Similarity=0.169  Sum_probs=83.8

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc---hhhhHHHhhCCCCccccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~---~~~~~l~~~~~~~~~~~i  214 (423)
                      +..++.++|.+.+.++++++|.||+|||++|+++.|.|+++++.+...  +..+|++..   .....++++++      |
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~------i   85 (118)
T 1zma_A           14 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH--IYFINSEEPSQLNDLQAFRSRYG------I   85 (118)
T ss_dssp             SEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC--CEEEETTCGGGHHHHHHHHHHHT------C
T ss_pred             hhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCe--EEEEECCCcCcHHHHHHHHHHcC------C
Confidence            577888999988888899999999999999999999999999987644  444555422   13457899999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~  250 (423)
                      .++||+++|.+|+.    ...+.|.++.+.|.+|+.
T Consensus        86 ~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           86 PTVPGFVHITDGQI----NVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             CSSCEEEEEETTEE----EEECCTTCCHHHHHHHHT
T ss_pred             CCCCeEEEEECCEE----EEEecCCCCHHHHHHHhh
Confidence            99999999988865    457889999999999984

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.62  E-value=2.9e-17  Score=135.05  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             cccccccccccCCCCH--HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           36 PPSHYDALGIKPYSSV--EQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~--~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      ..|+|+||||+++++.  ++||+|||+|++++|||++++ .++|++|++||++|+||.+|+.||.+|..
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~~~   74 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhcccc
Confidence            4589999999999999  999999999999999999864 78999999999999999999999998754

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.62  E-value=2.2e-16  Score=136.90  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=87.2

Q ss_pred             eccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCcc
Q 014549          141 VTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       141 L~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P  218 (423)
                      .+.++|++.+  .++++++|.||||||++|+.+.|.++++++++.+.+.++.||++   ....++++++      |.++|
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d---~~~~l~~~~~------v~~~P   79 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVD---QTAVYTQYFD------ISYIP   79 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETT---TCCHHHHHTT------CCSSS
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECC---cCHHHHHHcC------CCccC
Confidence            3567888887  56899999999999999999999999999999888999999999   4456999999      99999


Q ss_pred             EEEEeCCCCCC-----CCCcccccC-CCCHHHHHHHHHHh
Q 014549          219 SLVAFPPGCKS-----SDCMTRFEG-ELSVDAVTDWFATA  252 (423)
Q Consensus       219 ti~~f~~g~~~-----~~~~~~y~G-~~~~~~l~~fi~~~  252 (423)
                      |+++|.+|+..     ......+.| ..+.+.|.+++.+.
T Consensus        80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A           80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred             eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence            99999988651     000046779 88999999999776

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.61  E-value=1.6e-16  Score=122.25  Aligned_cols=65  Identities=11%  Similarity=0.118  Sum_probs=58.9

Q ss_pred             cccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           36 PPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        36 ~~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      ..++|++|||+++  ++..+||+|||+|++++|||++ ++.++|++|++||++|+|+.+|.. +.||..
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~-~~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~   76 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHALMQELNSLWGTFKTEVYNLR-MNLGGT   76 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CCHHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CCHHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence            4689999999999  9999999999999999999997 568899999999999999999988 556653

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=3.4e-16  Score=136.65  Aligned_cols=69  Identities=22%  Similarity=0.437  Sum_probs=62.3

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCCh---------HHHHHHHHHHHHHcCChhhHhhhhhcCC
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS---------TADFLKIQYAYELLTDPLWKRNYDVYGI  101 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~---------~~~f~~i~~Ay~~L~~~~~r~~yd~~~~  101 (423)
                      .....|||++|||+++++.++||+|||+|++++|||+++..         .++|..|++||++|+||.+|+.||..+.
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34567999999999999999999999999999999998632         4789999999999999999999998654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.61  E-value=3.1e-16  Score=129.40  Aligned_cols=99  Identities=11%  Similarity=0.170  Sum_probs=84.6

Q ss_pred             eeEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +.++++ ++|+++++++++++|.||++||++|+.+.|.|+++++.+.+ +.++.|||+   ....++++++      |.+
T Consensus        14 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~---~~~~l~~~~~------v~~   83 (114)
T 2oe3_A           14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVD---ESPDIAKECE------VTA   83 (114)
T ss_dssp             SCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETT---TCHHHHHHTT------CCS
T ss_pred             eeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC---CCHHHHHHCC------CCc
Confidence            455555 45677778889999999999999999999999999999887 999999999   4456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      +||+++|++|+.    ...+.|.. .+.|.+|+.+
T Consensus        84 ~Pt~~~~~~G~~----~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           84 MPTFVLGKDGQL----IGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             BSEEEEEETTEE----EEEEESSC-HHHHHHHHHT
T ss_pred             ccEEEEEeCCeE----EEEEeCCC-HHHHHHHHHh
Confidence            999999988865    34688988 8999998864

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.61  E-value=5e-16  Score=129.31  Aligned_cols=102  Identities=17%  Similarity=0.267  Sum_probs=89.2

Q ss_pred             eeeEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       137 ~v~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      .+..+++ ++|++.++++++++|.||++||++|+.+.|.|+++++.+.+. +.++.|||+   ...+++++++      |
T Consensus        16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d---~~~~~~~~~~------v   86 (121)
T 2j23_A           16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD---EQSQIAQEVG------I   86 (121)
T ss_dssp             CEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETT---TCHHHHHHHT------C
T ss_pred             ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECc---CCHHHHHHcC------C
Confidence            3566666 789999988999999999999999999999999999998876 899999999   4456999999      9


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .++||+++|.+|+.    ...+.|. +.+.|.+|+.+.
T Consensus        87 ~~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           87 RAMPTFVFFKNGQK----IDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             CSSSEEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             CcccEEEEEECCeE----EeeEcCC-CHHHHHHHHHHh
Confidence            99999999988765    3467888 899999999875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.40  E-value=5.1e-17  Score=130.64  Aligned_cols=102  Identities=21%  Similarity=0.287  Sum_probs=89.4

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.+|+.++|.+.+ +++++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+   ....++++++      |.+
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------v~~   73 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD---ENPNTAAQYG------IRS   73 (106)
Confidence            5789999999766 77899999999999999999999999999999888999999999   4455999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|+.    ...|.|..+.+.|.+|+.+.
T Consensus        74 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           74 IPTLLLFKNGQV----VDRLVGAQPKEALKERIDKH  105 (106)
Confidence            999999987765    45788999999999998654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.60  E-value=8.9e-16  Score=127.74  Aligned_cols=99  Identities=11%  Similarity=0.175  Sum_probs=81.3

Q ss_pred             eeeEeccCCccccc-CCCC--cEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTSEDFPSIF-HDSK--PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~--~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      .|.++|.++|.+.| ++.+  +++|.||||||++|+.+.|.++++|+++. .++|.+||++   .   .+++|+      
T Consensus         4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d---~---~~~~~~------   70 (118)
T 3evi_A            4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVN---S---CIQHYH------   70 (118)
T ss_dssp             SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGG---G---TSTTCC------
T ss_pred             ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHHHCC------
Confidence            37889999999877 3333  89999999999999999999999999985 4899999999   3   247777      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccC-------CCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEG-------ELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G-------~~~~~~l~~fi~~~  252 (423)
                      |+++||+++|++|+.    ...+.|       ..+.++|..++.+.
T Consensus        71 v~~~PT~~~fk~G~~----v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           71 DNCLPTIFVYKNGQI----EAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             GGGCSEEEEEETTEE----EEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCEE----EEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999999999999976    344544       34688888888664

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.59  E-value=8.7e-16  Score=133.39  Aligned_cols=104  Identities=16%  Similarity=0.233  Sum_probs=87.8

Q ss_pred             cceeeEecc-CCcccccCC--CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          135 VHAFNVVTS-EDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       135 ~~~v~~L~~-~nf~~~v~~--~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      ...|.+++. ++|++.+.+  +++++|.||++||++|+.+.|.|+++++.+ +.+.|+.|||++   ...+|++|+    
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~~~---~~~l~~~~~----   82 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEG---VPEVSEKYE----   82 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT---SHHHHHHTT----
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-CCeEEEEEECCC---CHHHHHHcC----
Confidence            344688874 889988865  899999999999999999999999999987 458999999994   456999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                        |.++||+++|.+|+.    ...+.| .+.+.|.+|+.+.+
T Consensus        83 --v~~~Pt~~~~~~G~~----~~~~~G-~~~~~l~~~i~~~l  117 (153)
T 2wz9_A           83 --ISSVPTFLFFKNSQK----IDRLDG-AHAPELTKKVQRHA  117 (153)
T ss_dssp             --CCSSSEEEEEETTEE----EEEEES-SCHHHHHHHHHHHS
T ss_pred             --CCCCCEEEEEECCEE----EEEEeC-CCHHHHHHHHHHHh
Confidence              999999999997755    345667 47889999998873

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.59  E-value=1e-15  Score=128.19  Aligned_cols=103  Identities=12%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             cceeeEe-ccCCcccccC----CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC
Q 014549          135 VHAFNVV-TSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG  209 (423)
Q Consensus       135 ~~~v~~L-~~~nf~~~v~----~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~  209 (423)
                      ...|.+| +.++|++.+.    ++++++|.||++||++|+.+.|.|+++++.+. .+.+..||++   ....++++|+  
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d---~~~~l~~~~~--   88 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTD---ELKSVASDWA--   88 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETT---TSHHHHHHTT--
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECc---cCHHHHHHcC--
Confidence            3447888 5688998884    48999999999999999999999999999986 5899999999   4456999999  


Q ss_pred             ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          |.++||+++|++|+.    ...+.| .+.+.|.+++.+.
T Consensus        89 ----v~~~Pt~~~~~~G~~----~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           89 ----IQAMPTFMFLKEGKI----LDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             ----CCSSSEEEEEETTEE----EEEEES-CCHHHHHHHHHHH
T ss_pred             ----CCccCEEEEEECCEE----EEEEeC-CCHHHHHHHHHHh
Confidence                999999999988865    346778 4899999999775

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.57  E-value=2.4e-15  Score=138.62  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             eEeccCCcccccCCCCcE-EEEEecCCCccccccHHHHHHHHHHhh----ccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          139 NVVTSEDFPSIFHDSKPW-LIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       139 ~~L~~~nf~~~v~~~~~~-lV~FYapwC~~C~~~~p~~~~~A~~l~----~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      ..|+.++|+.+...++++ +|.||+|||++|+++.|.|+++++.+.    +.+.++.|||+   ....+|++|+      
T Consensus       119 ~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~---~~~~l~~~~~------  189 (226)
T 1a8l_A          119 TNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI---EYPEWADQYN------  189 (226)
T ss_dssp             CCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG---GCHHHHHHTT------
T ss_pred             CCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcc---cCHHHHHhCC------
Confidence            557888888777666666 999999999999999999999999998    57899999999   4556999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |.++||+++|++|..    ...|.|.++.+.|.+|+.+.
T Consensus       190 v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          190 VMAVPKIVIQVNGED----RVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             CCSSCEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CcccCeEEEEeCCce----eEEEcCCCCHHHHHHHHHHh
Confidence            999999999998865    45788999999999999875

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.57  E-value=1.9e-15  Score=128.58  Aligned_cols=106  Identities=10%  Similarity=0.135  Sum_probs=88.6

Q ss_pred             eeeEec-cCCccccc----CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          137 AFNVVT-SEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       137 ~v~~L~-~~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      .+++++ .++|++.+    ..+++++|.||++||++|+.+.|.|+++++.+. .+.+..|||+   ....++++|+    
T Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~---~~~~~~~~~~----   96 (139)
T 3d22_A           25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVD---ELSDFSASWE----   96 (139)
T ss_dssp             TCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT---TSHHHHHHTT----
T ss_pred             cEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCc---ccHHHHHHcC----
Confidence            356665 68899887    358899999999999999999999999999884 5899999999   4556999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCC
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP  257 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p  257 (423)
                        |.++||+++|.+|+.    ...+.|. +.++|.+++.+.+..+|
T Consensus        97 --v~~~Pt~~~~~~G~~----~~~~~G~-~~~~l~~~l~~~~~~~~  135 (139)
T 3d22_A           97 --IKATPTFFFLRDGQQ----VDKLVGA-NKPELHKKITAILDSLP  135 (139)
T ss_dssp             --CCEESEEEEEETTEE----EEEEESC-CHHHHHHHHHHHHHTSC
T ss_pred             --CCcccEEEEEcCCeE----EEEEeCC-CHHHHHHHHHHHhccCC
Confidence              999999999987765    3467788 88999999988754443

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=2.8e-15  Score=127.54  Aligned_cols=102  Identities=10%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             CcceeeEeccCCcccccCC---CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCc
Q 014549          134 SVHAFNVVTSEDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       134 ~~~~v~~L~~~nf~~~v~~---~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      ....|.+|+.++|.+.|..   +++++|.||||||++|+.+.|.|+++|+.+. .+.|+.||++++.      ++|+   
T Consensus         8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~------~~~~---   77 (135)
T 2dbc_A            8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI------EHYH---   77 (135)
T ss_dssp             CCCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC------SSCC---
T ss_pred             CCCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc------ccCC---
Confidence            3445788999999988743   3689999999999999999999999999874 5899999999442      5667   


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCC-------CHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGEL-------SVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~-------~~~~l~~fi~~~  252 (423)
                         |.++||+++|.+|+.    ...+.|..       +.+.|..++.+.
T Consensus        78 ---i~~~Pt~~~~~~G~~----v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           78 ---DNCLPTIFVYKNGQI----EGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             ---SSCCSEEEEESSSSC----SEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             ---CCCCCEEEEEECCEE----EEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence               999999999998876    34566654       788999999876

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.56  E-value=2.8e-15  Score=123.27  Aligned_cols=101  Identities=16%  Similarity=0.146  Sum_probs=86.2

Q ss_pred             eeeEe-ccCCcccccCC----CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          137 AFNVV-TSEDFPSIFHD----SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       137 ~v~~L-~~~nf~~~v~~----~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      .|+++ +.++|++.+..    +++++|.||++||++|+.+.|.|+++++.+. .+.+..||++   ....++++++    
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~---~~~~~~~~~~----   78 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVD---ELKDVAEAYN----   78 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT---TSHHHHHHTT----
T ss_pred             ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcc---cCHHHHHHcC----
Confidence            36777 46889988843    8999999999999999999999999999886 5899999999   4456999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++||+++|++|+.    ...+.| .+.+.|.+++.+.
T Consensus        79 --v~~~Pt~~~~~~g~~----~~~~~g-~~~~~l~~~l~~~  112 (118)
T 2vm1_A           79 --VEAMPTFLFIKDGEK----VDSVVG-GRKDDIHTKIVAL  112 (118)
T ss_dssp             --CCSBSEEEEEETTEE----EEEEES-CCHHHHHHHHHHH
T ss_pred             --CCcCcEEEEEeCCeE----EEEecC-CCHHHHHHHHHHH
Confidence              999999999988765    346678 5889999999877

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.56  E-value=7.7e-16  Score=155.99  Aligned_cols=106  Identities=21%  Similarity=0.351  Sum_probs=87.1

Q ss_pred             cceeeEeccCCcccccCC--CCcEEEEEecCCCccccccHHHHHHHHHHhh---c-----cceEEEEEcccchhhhHHHh
Q 014549          135 VHAFNVVTSEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE---G-----IANTGMVELGDIRLATHLAE  204 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v~~--~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~---~-----~~~~~~Vdc~~~~~~~~l~~  204 (423)
                      .+.|++||.++|++.+.+  .++++|.||||||++|+.+.|.|+++++.+.   +     .+.|++|||+   ...++|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d---~~~~la~   98 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA---SEVDLCR   98 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETT---TCHHHHH
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECC---CCHHHHH
Confidence            345899999999999854  4799999999999999999999999999987   3     5899999999   4456999


Q ss_pred             hCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       205 ~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|+      |.++||+++|.+|+..  .+..|.|.++.+.| .|+.+.
T Consensus        99 ~y~------V~~~PTlilf~~gg~~--~~~~y~G~r~~e~L-~fI~k~  137 (470)
T 3qcp_A           99 KYD------INFVPRLFFFYPRDSC--RSNEECGTSSLEHV-AFENSH  137 (470)
T ss_dssp             HTT------CCSSCEEEEEEESSCC--CTTSCCCCCCEEEE-ECSCTT
T ss_pred             HcC------CCccCeEEEEECCCce--EEEEeeCCCCHHHH-HHHHHh
Confidence            999      9999999999766531  24578888777665 555433

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.56  E-value=2.1e-15  Score=129.58  Aligned_cols=102  Identities=10%  Similarity=0.089  Sum_probs=80.8

Q ss_pred             ccCCccccc-C-CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccE
Q 014549          142 TSEDFPSIF-H-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       142 ~~~nf~~~v-~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      +.++|++.+ + ++++++|.||||||++|+.+.|.++++++++++.+.|+.||++++   .+++++++      |+++||
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~~~~~~------i~~~Pt   80 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV---PDFNKMYE------LYDPCT   80 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC---CTTTTSSC------SCSSCE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccC---HHHHHHcC------CCCCCE
Confidence            456788666 4 689999999999999999999999999999988899999999954   45899999      999999


Q ss_pred             EEEeCCCCCCC-----CCcccccCCC-CHHHHHHHHHHh
Q 014549          220 LVAFPPGCKSS-----DCMTRFEGEL-SVDAVTDWFATA  252 (423)
Q Consensus       220 i~~f~~g~~~~-----~~~~~y~G~~-~~~~l~~fi~~~  252 (423)
                      +++|.+|+...     .......|.. +.+.|.+++.+.
T Consensus        81 ~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           81 VMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             EEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             EEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            99999886520     0001244555 378888888765

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.56  E-value=6.8e-16  Score=120.97  Aligned_cols=63  Identities=11%  Similarity=0.094  Sum_probs=56.4

Q ss_pred             CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhh
Q 014549           33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRN   95 (423)
Q Consensus        33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~   95 (423)
                      .+...++|+||||+++|+.+|||+|||+|+++||||++++    +.++|++|++||++|+|...|..
T Consensus        12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            3456789999999999999999999999999999999985    46789999999999999877733

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.56  E-value=1.5e-15  Score=124.01  Aligned_cols=101  Identities=13%  Similarity=0.160  Sum_probs=85.8

Q ss_pred             eeeEe-ccCCcccccC----CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          137 AFNVV-TSEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       137 ~v~~L-~~~nf~~~v~----~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      .|+++ +.++|++.+.    ++++++|.||++||++|+.+.|.++++++.+. .+.+..||++   ....++++++    
T Consensus         5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~---~~~~~~~~~~----   76 (113)
T 1ti3_A            5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVD---ELKAVAEEWN----   76 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETT---TCHHHHHHHH----
T ss_pred             ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEcc---ccHHHHHhCC----
Confidence            46777 5688998884    48999999999999999999999999999886 5899999999   4456999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++||+++|.+|+.    ...+.| .+.+.|.+++.+.
T Consensus        77 --v~~~Pt~~~~~~G~~----~~~~~g-~~~~~l~~~l~~~  110 (113)
T 1ti3_A           77 --VEAMPTFIFLKDGKL----VDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             --CSSTTEEEEEETTEE----EEEEEC-CCTTHHHHHHHHH
T ss_pred             --CCcccEEEEEeCCEE----EEEEec-CCHHHHHHHHHHh
Confidence              999999999988765    345678 5888999999876

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.55  E-value=2.9e-15  Score=127.09  Aligned_cols=101  Identities=10%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             ceeeEecc-CCcccccCC--CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTS-EDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~-~nf~~~v~~--~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      +.|++++. ++|++++.+  +++++|.||++||++|+.+.|.|+++++.+  .+.++.||++   ....++++|+     
T Consensus        20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~---~~~~l~~~~~-----   89 (133)
T 3cxg_A           20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVD---IHPKLNDQHN-----   89 (133)
T ss_dssp             EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETT---TCHHHHHHTT-----
T ss_pred             ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEecc---chHHHHHhcC-----
Confidence            45788886 788888844  579999999999999999999999998776  4799999999   4456999999     


Q ss_pred             cccCccEEEEeC--CCC--CCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFP--PGC--KSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~--~g~--~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |+++||+++|.  +|+  .    ...+.|. +.++|.+++.+.
T Consensus        90 -v~~~Pt~~~~~~~~g~g~~----~~~~~G~-~~~~l~~~l~~~  127 (133)
T 3cxg_A           90 -IKALPTFEFYFNLNNEWVL----VHTVEGA-NQNDIEKAFQKY  127 (133)
T ss_dssp             -CCSSSEEEEEEEETTEEEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             -CCCCCEEEEEEecCCCeEE----EEEEcCC-CHHHHHHHHHHH
Confidence             99999999996  665  3    3467787 899999999877

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.55  E-value=2e-15  Score=118.71  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             HHHHHhhcCCCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCC
Q 014549           24 LFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTD   89 (423)
Q Consensus        24 ~~~~~~~~~~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~~   89 (423)
                      +|..+..+...+ .++|++|||++.|+..+||+|||+++++||||++++      +.++|+.|++||++|.+
T Consensus        21 lL~~l~~~L~~~-~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           21 LLSTMHTVLWAG-ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             HHHHGGGTSCTT-CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccc-ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            333444444332 589999999999999999999999999999999874      46689999999999974

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.54  E-value=8.2e-15  Score=151.47  Aligned_cols=104  Identities=16%  Similarity=0.269  Sum_probs=89.8

Q ss_pred             ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhh-c--cceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-G--IANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      +.|..|+.++|+..+ +++++++|.||||||++|+.+.|.|+++++.+. +  .+.++.|||+.+.    +.+ ++    
T Consensus       358 ~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~----~~~-~~----  428 (504)
T 2b5e_A          358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND----VRG-VV----  428 (504)
T ss_dssp             CSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC----CSS-CC----
T ss_pred             ccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccc----ccc-CC----
Confidence            568999999999887 678999999999999999999999999999987 3  5799999999553    223 67    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |+++||+++|++|...  .+..|.|.++.++|.+|+.+.
T Consensus       429 --v~~~Pt~~~~~~G~~~--~~~~~~G~~~~~~l~~~i~~~  465 (504)
T 2b5e_A          429 --IEGYPTIVLYPGGKKS--ESVVYQGSRSLDSLFDFIKEN  465 (504)
T ss_dssp             --CSSSSEEEEECCTTSC--CCCBCCSCCCHHHHHHHHHHH
T ss_pred             --ceecCeEEEEeCCcee--cceEecCCCCHHHHHHHHHhc
Confidence              9999999999888641  245899999999999999987

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.54  E-value=3.4e-15  Score=123.84  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=83.8

Q ss_pred             eeEe--ccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          138 FNVV--TSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       138 v~~L--~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      |..+  +.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+ +.+.|+.|||++   ...++++++      |
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~---~~~~~~~~~------i   74 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDK---NGNAADAYG------V   74 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT---CHHHHHHTT------C
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCC---CHHHHHhcC------C
Confidence            5667  567888555 67899999999999999999999999999998 678999999994   456999999      9


Q ss_pred             cCccEEEEeCC----CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          215 RGLPSLVAFPP----GCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f~~----g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .++||+++|.+    |..    ...+.|..+ ++|.+.+.+.
T Consensus        75 ~~~Pt~~~~~~~~~~G~~----~~~~~G~~~-~~l~~~~~~~  111 (118)
T 2f51_A           75 SSIPALFFVKKEGNEIKT----LDQFVGADV-SRIKADIEKF  111 (118)
T ss_dssp             CSSSEEEEEEEETTEEEE----EEEEESCCH-HHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCcceE----EEeecCCCH-HHHHHHHHHh
Confidence            99999999987    544    346778764 5699888877

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.53  E-value=5.9e-16  Score=150.67  Aligned_cols=67  Identities=24%  Similarity=0.442  Sum_probs=0.0

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID  102 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~  102 (423)
                      ..|||++|||+++|+.+|||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||.++..
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            479999999999999999999999999999999886  4678899999999999999999999998543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.53  E-value=1.1e-14  Score=149.68  Aligned_cols=105  Identities=18%  Similarity=0.297  Sum_probs=93.1

Q ss_pred             ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      ..|..++.++|++.+ +++++++|+||||||++|+++.|.|+++++.+++  .+.++.||++.+    +++++++     
T Consensus       352 ~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~----~~~~~~~-----  422 (481)
T 3f8u_A          352 GPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN----DVPSPYE-----  422 (481)
T ss_dssp             SSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS----CCCTTCC-----
T ss_pred             CCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch----hhHhhCC-----
Confidence            457899999999888 5589999999999999999999999999999987  489999999955    3788888     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|...  .+..|.|.++.++|.+|+.+.
T Consensus       423 -v~~~Pt~~~~~~~~~~--~~~~~~G~~~~~~l~~~l~~~  459 (481)
T 3f8u_A          423 -VRGFPTIYFSPANKKL--NPKKYEGGRELSDFISYLQRE  459 (481)
T ss_dssp             -CCSSSEEEEECTTCTT--SCEECCSCCSHHHHHHHHHHH
T ss_pred             -CcccCEEEEEeCCCeE--eeeEeCCCCCHHHHHHHHHHh
Confidence             9999999999988751  256899999999999999988

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=9.8e-15  Score=122.46  Aligned_cols=103  Identities=12%  Similarity=0.149  Sum_probs=87.5

Q ss_pred             eEeccCCccccc----CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          139 NVVTSEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       139 ~~L~~~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      +.++..+|++.+    .++++++|.||++||++|+.+.|.|   +++++.+.+.+.+..|||+.+ ....+|++++    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~~~----   83 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKG-EGVELRKKYG----   83 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSST-THHHHHHHTT----
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCc-chHHHHHHcC----
Confidence            567888998877    3688999999999999999999999   888888877788999999842 2456999999    


Q ss_pred             ccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++||+++| ++|+.    ...+.|..+.+.|.+|+.+.
T Consensus        84 --v~~~Pt~~~~d~~G~~----~~~~~G~~~~~~l~~~l~~~  119 (130)
T 2kuc_A           84 --VHAYPTLLFINSSGEV----VYRLVGAEDAPELLKKVKLG  119 (130)
T ss_dssp             --CCSSCEEEEECTTSCE----EEEEESCCCHHHHHHHHHHH
T ss_pred             --CCCCCEEEEECCCCcE----EEEecCCCCHHHHHHHHHHH
Confidence              9999999999 56654    44678999999999999887

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.53  E-value=3.8e-15  Score=132.61  Aligned_cols=72  Identities=18%  Similarity=0.389  Sum_probs=63.3

Q ss_pred             cCCCCcccccccc------cccC-CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhh---cC
Q 014549           31 LPRSFPPSHYDAL------GIKP-YSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDV---YG  100 (423)
Q Consensus        31 ~~~~~~~d~y~~l------g~~~-~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~---~~  100 (423)
                      +.++...|||++|      |+.+ +++..+||+|||+|++++|||+++++.++|..|++||++|+||.+|..||.   +|
T Consensus         5 ~~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g   84 (181)
T 3uo3_A            5 VQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRN   84 (181)
T ss_dssp             --CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHHHHC
T ss_pred             cCCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHHHhC
Confidence            3566788999999      4654 899999999999999999999998788899999999999999999999997   55


Q ss_pred             Cc
Q 014549          101 ID  102 (423)
Q Consensus       101 ~~  102 (423)
                      ..
T Consensus        85 ~~   86 (181)
T 3uo3_A           85 ID   86 (181)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.51  E-value=7.1e-15  Score=129.88  Aligned_cols=62  Identities=11%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             cccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhhc
Q 014549           38 SHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVY   99 (423)
Q Consensus        38 d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~~   99 (423)
                      |||++|||++++  +..+||++||+|+++||||++++        +.++|..|++||++|+||.+|..||..
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~   73 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            899999999999  99999999999999999999873        235799999999999999999999986

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.1e-15  Score=112.03  Aligned_cols=58  Identities=16%  Similarity=0.068  Sum_probs=53.1

Q ss_pred             cccccccccccC-CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHh
Q 014549           36 PPSHYDALGIKP-YSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKR   94 (423)
Q Consensus        36 ~~d~y~~lg~~~-~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~   94 (423)
                      ..++|++|||++ +++.++||+|||+|++++|||++ ++.++|++|++||++|+++..|+
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhcC
Confidence            468999999998 79999999999999999999996 67889999999999999887653

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.50  E-value=1.1e-14  Score=132.32  Aligned_cols=65  Identities=12%  Similarity=0.129  Sum_probs=58.0

Q ss_pred             CCcccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           34 SFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      ....|||++|||+++  ++..+||++||+|++++|||++++        +.++|..|++||++|+||.+|..||.
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            346799999999986  789999999999999999999863        23569999999999999999999995

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.50  E-value=8.4e-15  Score=129.36  Aligned_cols=60  Identities=18%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhHhhh
Q 014549           37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNY   96 (423)
Q Consensus        37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~~~~~r~~y   96 (423)
                      .|+|++|||++.|+.++||+|||+++++||||++++      +.++|++|++||++|+|+.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            699999999999999999999999999999999863      467899999999999999999876

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.49  E-value=4.4e-15  Score=124.38  Aligned_cols=102  Identities=13%  Similarity=0.184  Sum_probs=85.7

Q ss_pred             eeeEec-cCCcccccC----CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          137 AFNVVT-SEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       137 ~v~~L~-~~nf~~~v~----~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      .+.+++ .++|++.+.    ++++++|.||++||++|+.+.|.|+++++.+. .+.+..|||++   ...++++++    
T Consensus        15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~---~~~~~~~~~----   86 (130)
T 1wmj_A           15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDE---LKEVAEKYN----   86 (130)
T ss_dssp             SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTT---SGGGHHHHT----
T ss_pred             ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccc---hHHHHHHcC----
Confidence            356674 578988883    48899999999999999999999999999986 58999999994   455999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                        |.++||+++|.+|+.    ...+.| .+.+.|.+++.+.+
T Consensus        87 --v~~~Pt~~~~~~g~~----~~~~~g-~~~~~l~~~l~~~~  121 (130)
T 1wmj_A           87 --VEAMPTFLFIKDGAE----ADKVVG-ARKDDLQNTIVKHV  121 (130)
T ss_dssp             --CCSSCCCCBCTTTTC----CBCCCT-TCTTTHHHHHHHHT
T ss_pred             --CCccceEEEEeCCeE----EEEEeC-CCHHHHHHHHHHHH
Confidence              999999999988865    346778 57889999998873

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.48  E-value=3e-14  Score=120.71  Aligned_cols=102  Identities=16%  Similarity=0.257  Sum_probs=83.4

Q ss_pred             ccCCcccccC--CCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccc-hhhhHHHhhCCCCcccccc
Q 014549          142 TSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       142 ~~~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~-~~~~~l~~~~~~~~~~~i~  215 (423)
                      +.++|+..+.  .+++++|.||++||++|+.+.|.+   +++++.+.+ +.+..|||+.+ .....++++|+      |.
T Consensus        18 ~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~------v~   90 (134)
T 2fwh_A           18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN------VL   90 (134)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT------CC
T ss_pred             CHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcC------CC
Confidence            4456766663  378999999999999999999999   999999876 89999999532 24677999999      99


Q ss_pred             CccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++| ++|+..  ....+.|..+.+.|.+++.+.
T Consensus        91 ~~Pt~~~~d~~G~~v--~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           91 GLPTILFFDGQGQEH--PQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             SSSEEEEECTTSCBC--GGGCBCSCCCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCEe--eeeeeeeccCHHHHHHHHHhc
Confidence            99999999 777541  004688999999999999776

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.48  E-value=7.2e-15  Score=135.36  Aligned_cols=101  Identities=17%  Similarity=0.275  Sum_probs=84.7

Q ss_pred             eeeEe-ccCCcccccCC---CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          137 AFNVV-TSEDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       137 ~v~~L-~~~nf~~~v~~---~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      .|.+| +.++|.+.|.+   +++++|.||+|||++|+.+.|.|+++|+.+. .+.|++|||+ +   +.++++|+     
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~---~~l~~~~~-----  169 (217)
T 2trc_P          100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-N---TGAGDRFS-----  169 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-H---HTCSTTSC-----
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-c---HHHHHHCC-----
Confidence            37888 88999988832   3899999999999999999999999999884 6899999998 3   34888898     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCC-------HHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELS-------VDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~-------~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|..    ...|.|..+       .++|..|+.+.
T Consensus       170 -i~~~PTl~~~~~G~~----v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          170 -SDVLPTLLVYKGGEL----ISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             -GGGCSEEEEEETTEE----EEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             -CCCCCEEEEEECCEE----EEEEeCCcccCcccCCHHHHHHHHHHc
Confidence             999999999998865    346667655       48899998765

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.47  E-value=1.9e-14  Score=134.60  Aligned_cols=101  Identities=17%  Similarity=0.276  Sum_probs=84.0

Q ss_pred             eeeEe-ccCCcccccC---CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          137 AFNVV-TSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       137 ~v~~L-~~~nf~~~v~---~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      .|.+| +.++|.+.|.   .+++++|.||||||++|+.+.|.|+++|+.+.+ ++|++||+++    ..++++|+     
T Consensus       113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~----~~l~~~~~-----  182 (245)
T 1a0r_P          113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN----TGAGDRFS-----  182 (245)
T ss_dssp             SEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH----HCCTTSSC-----
T ss_pred             eEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc----HHHHHHCC-----
Confidence            47888 7899998883   378999999999999999999999999999865 8999999983    44888888     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccC-------CCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEG-------ELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G-------~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|..    ...+.|       .++.+.|..|+.+.
T Consensus       183 -I~~~PTll~~~~G~~----v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          183 -SDVLPTLLVYKGGEL----LSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             -TTTCSEEEEEETTEE----EEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             -CCCCCEEEEEECCEE----EEEEeCCcccccccccHHHHHHHHHHc
Confidence             999999999998865    223333       25678899998876

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.47  E-value=8.9e-14  Score=107.35  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=71.6

Q ss_pred             CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCc
Q 014549          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (423)
Q Consensus       154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~  233 (423)
                      .+.+|.||++||++|+++.|.++++++++.+.+.+..||+++++   +++++++      |.++||+++  +|+.     
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~~Pt~~~--~G~~-----   66 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP---QKAMEYG------IMAVPTIVI--NGDV-----   66 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC---CTTTSTT------TCCSSEEEE--TTEE-----
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHCC------CcccCEEEE--CCEE-----
Confidence            46799999999999999999999999999878999999999554   4889998      999999998  5532     


Q ss_pred             ccccCCCCHHHHHHHHHHh
Q 014549          234 TRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       234 ~~y~G~~~~~~l~~fi~~~  252 (423)
                       .+.|..+.+.|.+++.+.
T Consensus        67 -~~~G~~~~~~l~~~l~~~   84 (85)
T 1fo5_A           67 -EFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             -ECCSSSSSHHHHHHHHHH
T ss_pred             -eeecCCCHHHHHHHHHHh
Confidence             688988999999999765

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.47  E-value=5e-14  Score=119.42  Aligned_cols=101  Identities=15%  Similarity=0.204  Sum_probs=88.9

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC-
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG-  216 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~-  216 (423)
                      |.++|.+||++++++..+++|.||++ |++|+.+.|.++++|++++|.+.|++||.++   +..++++||      |++ 
T Consensus         8 v~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~---~~~~a~~~g------i~~~   77 (133)
T 2djk_A            8 IGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKA---FGAHAGNLN------LKTD   77 (133)
T ss_dssp             SEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTT---TGGGTTTTT------CCSS
T ss_pred             eeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHH---hHHHHHHcC------CCcc
Confidence            67899999998888889999999999 8999999999999999999999999999994   445899999      888 


Q ss_pred             -ccEEEEeCC--CCCCCCCccccc--CCCCHHHHHHHHHHhh
Q 014549          217 -LPSLVAFPP--GCKSSDCMTRFE--GELSVDAVTDWFATAI  253 (423)
Q Consensus       217 -~Pti~~f~~--g~~~~~~~~~y~--G~~~~~~l~~fi~~~~  253 (423)
                       .||+++|..  |...     .+.  |..+.+.|.+|+.+.+
T Consensus        78 ~iPtl~i~~~~~g~~~-----~~~~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           78 KFPAFAIQEVAKNQKF-----PFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             SSSEEEEECTTTCCBC-----CCCSSSCCCHHHHHHHHHHHH
T ss_pred             cCCEEEEEecCcCccc-----CCCCccccCHHHHHHHHHHHH
Confidence             999999997  4432     443  9999999999998873

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.46  E-value=1.6e-14  Score=117.21  Aligned_cols=55  Identities=9%  Similarity=-0.003  Sum_probs=49.8

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--C--------hHHHHHHHHHHHHHcCChh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--P--------STADFLKIQYAYELLTDPL   91 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~--------~~~~f~~i~~Ay~~L~~~~   91 (423)
                      ..|||++||++. |+..+||+|||++++++|||+++  +        +.++|+.|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            479999999996 99999999999999999999975  2        3678999999999999985

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.46  E-value=1.3e-13  Score=106.37  Aligned_cols=81  Identities=11%  Similarity=0.032  Sum_probs=71.2

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcc
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT  234 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~  234 (423)
                      ..+|.||++||++|+++.|.++++++++.+.+.+..||++++   .+++++++      |.++||+++  +|+.      
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~------v~~~Pt~~~--~G~~------   65 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD---REKAIEYG------LMAVPAIAI--NGVV------   65 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTC---GGGGGGTC------SSCSSEEEE--TTTE------
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCC---HHHHHhCC------ceeeCEEEE--CCEE------
Confidence            468999999999999999999999999988899999999944   45899999      999999998  5532      


Q ss_pred             cccCCCCHHHHHHHHHHh
Q 014549          235 RFEGELSVDAVTDWFATA  252 (423)
Q Consensus       235 ~y~G~~~~~~l~~fi~~~  252 (423)
                      .+.|..+.+.|.+++.+.
T Consensus        66 ~~~G~~~~~~l~~~l~~~   83 (85)
T 1nho_A           66 RFVGAPSREELFEAINDE   83 (85)
T ss_dssp             EEECSSCCHHHHHHHHHH
T ss_pred             EEccCCCHHHHHHHHHHH
Confidence            688988999999999875

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.46  E-value=1.3e-13  Score=116.27  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=77.3

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHH--HHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc---cCccEEEEe-C
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR---RGLPSLVAF-P  224 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~--~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i---~~~Pti~~f-~  224 (423)
                      .++++++|.||++||++|+.+.|.|+  ++++.+.+.+.+..||++.......++++|+      |   .++||+++| +
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~------v~~~~~~Pt~~~~d~  100 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYG------DPIQDGIPAVVVVNS  100 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTT------CGGGGCSSEEEEECT
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhC------CccCCccceEEEECC
Confidence            56899999999999999999999999  9999998889999999932115567999999      8   999999999 7


Q ss_pred             CCCCCCCCcccccC-------CCCHHHHHHHHHHh
Q 014549          225 PGCKSSDCMTRFEG-------ELSVDAVTDWFATA  252 (423)
Q Consensus       225 ~g~~~~~~~~~y~G-------~~~~~~l~~fi~~~  252 (423)
                      +|+.    ...+.|       ..+.+.+.+|+.+.
T Consensus       101 ~G~~----~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          101 DGKV----RYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             TSCE----EEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             CCCE----EEEecCCcccccccCCHHHHHHHHHHh
Confidence            7765    345556       57889999998764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.46  E-value=5.9e-14  Score=129.64  Aligned_cols=98  Identities=12%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             eeEeccCCcccccCCCCcE-EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIFHDSKPW-LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~-lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +..|+.++|+.++..+.++ +|.||+|||++|+.+.|.|+++++.+ +.+.++.|||+   ...++|++++      |.+
T Consensus       120 ~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~---~~~~l~~~~~------v~~  189 (229)
T 2ywm_A          120 KPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDAS---ENQDLAEQFQ------VVG  189 (229)
T ss_dssp             CCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGG---GCHHHHHHTT------CCS
T ss_pred             ccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECC---CCHHHHHHcC------Ccc
Confidence            4678888998887666666 88999999999999999999999998 57899999999   4556999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++  +|+.     ..|.|.++.+.|.+|+.+.
T Consensus       190 ~Pt~~~--~G~~-----~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          190 VPKIVI--NKGV-----AEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             SSEEEE--GGGT-----EEEESCCCHHHHHHHHHHH
T ss_pred             cCEEEE--CCEE-----EEeeCCCCHHHHHHHHHHH
Confidence            999998  6643     3689999999999999876

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.44  E-value=4.5e-14  Score=117.83  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=83.0

Q ss_pred             eeeEeccCCcccccC--CCCcEEEEEecC-------CCccccccHHHHHHHHHHhhccceEEEEEcccc----hhhhHHH
Q 014549          137 AFNVVTSEDFPSIFH--DSKPWLIQVYSD-------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDI----RLATHLA  203 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~--~~~~~lV~FYap-------wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~----~~~~~l~  203 (423)
                      .|...+.++|++.+.  ++++++|.|||+       ||++|+.+.|.++++++.+.+.+.|..||+++.    .....++
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~   85 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   85 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence            356678889998884  489999999999       999999999999999999877899999999310    0345689


Q ss_pred             hhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          204 ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       204 ~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      ++++      |.++||+++|.++..    ...+.| .+.+.|.+|+.+
T Consensus        86 ~~~~------i~~~Pt~~~~~~~~~----~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           86 KNLK------VTAVPTLLKYGTPQK----LVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHC------CCSSSEEEETTSSCE----EEGGGG-GCHHHHHHHHHC
T ss_pred             HHCC------CCeeCEEEEEcCCce----Eecccc-CCHHHHHHHHhc
Confidence            9999      999999999988643    223333 467888888753

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.44  E-value=6.5e-12  Score=123.94  Aligned_cols=204  Identities=13%  Similarity=0.192  Sum_probs=146.3

Q ss_pred             ceeeEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549          136 HAFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR  214 (423)
Q Consensus       136 ~~v~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i  214 (423)
                      ..|.+|++ +++++.++++++++|-|+.+-+..+   ...|.++|+.+ ..+.|+.++-      .++|++++      +
T Consensus        17 ~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~---~~~f~~~A~~~-~~~~F~~t~~------~~v~~~~~------v   80 (361)
T 3uem_A           17 EFATTLPDGAAAESLVESSEVAVIGFFKDVESDS---AKQFLQAAEAI-DDIPFGITSN------SDVFSKYQ------L   80 (361)
T ss_dssp             SSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHH---HHHHHHHHHHC-SSSCEEEECC------HHHHHHTT------C
T ss_pred             ccceecCCHHHHHHHHhcCCcEEEEEEcCCCchH---HHHHHHHHhcC-CCceEEEECc------HHHHHHhC------C
Confidence            34567754 7788888889999999998766654   57999999998 5577775543      34999999      8


Q ss_pred             cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCC-CC--
Q 014549          215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTG-ER--  291 (423)
Q Consensus       215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~-~~--  291 (423)
                      +. |+|++|++-...   ...|+|..+.++|.+|+...  ..|....++.++ ...+.... ...++++|+.+.+ +|  
T Consensus        81 ~~-~~i~lfk~f~~~---~~~~~g~~~~~~i~~fi~~~--~~p~v~~~~~~~-~~~~~~~~-~~~~~v~F~~~~~~~~~~  152 (361)
T 3uem_A           81 DK-DGVVLFKKFDEG---RNNFEGEVTKENLLDFIKHN--QLPLVIEFTEQT-APKIFGGE-IKTHILLFLPKSVSDYDG  152 (361)
T ss_dssp             SS-SEEEEEESSTTS---EEECCSCCCHHHHHHHHHHH--SSCSEEECSTTT-HHHHHSCS-CCEEEEEECCSSSSSHHH
T ss_pred             CC-CeEEEEEecCCC---ccccCCcCCHHHHHHHHHHc--CCCcceecCccc-HHHHhcCC-CCcEEEEEEeCCchhHHH
Confidence            77 999999863221   45899999999999999987  356665567655 34444332 1123455555322 22  


Q ss_pred             CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC--CCeEEEecCCCcceeEec---CCCChhHHHHHHHhhc
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYY---GSFNNSRLSEVMEQNK  364 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~Ptl~lfk~~~~~~~~y~---g~~~~~~l~~fi~~~~  364 (423)
                      ..+.++.+|.+|++.+.|+.+.....+...+++.|||.+  +|++++|..++ ....|.   |.++.+.|.+|+....
T Consensus       153 ~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~l  229 (361)
T 3uem_A          153 KLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRFL  229 (361)
T ss_dssp             HHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHHh
Confidence            346678899999988888888644223578999999987  99999998643 233453   7889999999999864

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.41  E-value=5.3e-12  Score=124.31  Aligned_cols=204  Identities=10%  Similarity=0.131  Sum_probs=143.7

Q ss_pred             eeEec-cCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          138 FNVVT-SEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       138 v~~L~-~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      +.+|+ .+++++.++ +++.++|.||++||.   ...+.|.++|+.+.+.+.||.+++.      ++|++++      |+
T Consensus       125 ~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~~~~~f~~~~~~------~~~~~~~------v~  189 (350)
T 1sji_A          125 VEIINSKLEVQAFERIEDQIKLIGFFKSEES---EYYKAFEEAAEHFQPYIKFFATFDK------GVAKKLS------LK  189 (350)
T ss_dssp             EEECCSHHHHHHHHHCCSSCEEEEECSCTTS---HHHHHHHHHHHHTTTTSEEEEECCH------HHHHHHT------CC
T ss_pred             ceeccchHHHHHHhccCCCcEEEEEECCCCc---HHHHHHHHHHHhhccCcEEEEECCH------HHHHHcC------CC
Confidence            56775 467888876 778999999999864   5678999999999988999998644      3899999      88


Q ss_pred             CccEEEEeCCCCCCCCCcccccCC-CCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCC----
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGE----  290 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~----  290 (423)
                       +|++++|+++...   +..|+|. ++.++|.+|+.+.  ..|....+|.++. ..+..+ +..+..+++|.....    
T Consensus       190 -~p~i~~~~~~~~~---~~~y~g~~~~~~~l~~fi~~~--~~p~v~elt~~~~-~~~~~~-~~~~~~~l~f~~~~~~~~~  261 (350)
T 1sji_A          190 -MNEVDFYEPFMDE---PIAIPDKPYTEEELVEFVKEH--QRPTLRRLRPEDM-FETWED-DLNGIHIVAFAERSDPDGY  261 (350)
T ss_dssp             -TTCEEEECTTCSS---CEECSSSSCCHHHHHHHHHHH--CCCSEEECCTTTH-HHHHHS-CSSSEEEEEECCTTSHHHH
T ss_pred             -CCcEEEEeCCCCC---ceecCCCCCCHHHHHHHHHHc--CccchhhcChhhH-HHHhcC-CCCCcEEEEEEcCCCccHH
Confidence             9999999985432   5689997 9999999999987  4566666776663 334332 111233334443211    


Q ss_pred             CCchHHHHHHHhccc--cceEEEEEccccccHHHH----hhcCCC-CCCeEEEecCCCcceeE--e---cCCCChhHHHH
Q 014549          291 RASPFVRQISRNYWA--YASFAFVLWREEESSIWW----NTFEVE-SAPAIVFLKDPGVKPVV--Y---YGSFNNSRLSE  358 (423)
Q Consensus       291 ~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~~~l~----~~f~v~-~~Ptl~lfk~~~~~~~~--y---~g~~~~~~l~~  358 (423)
                      .....++.+|.++++  .+.|+.+....  ...++    +.||+. .+|+++++.........  +   .+.++.+.|.+
T Consensus       262 ~~~~~~~~vA~~~~~~~~~~f~~id~~~--~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~  339 (350)
T 1sji_A          262 EFLEILKQVARDNTDNPDLSIVWIDPDD--FPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELED  339 (350)
T ss_dssp             HHHHHHHHHHHHGGGCSSCCEEEECGGG--CHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEECchh--hHHHHHHHHhhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHH
Confidence            123445668888876  78888875332  24456    789998 48999999753332222  2   24788999999


Q ss_pred             HHHhhccc
Q 014549          359 VMEQNKLQ  366 (423)
Q Consensus       359 fi~~~~~~  366 (423)
                      |++...-+
T Consensus       340 F~~d~~~G  347 (350)
T 1sji_A          340 WIEDVLSG  347 (350)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHhcC
Confidence            99985433

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.40  E-value=5.7e-12  Score=125.05  Aligned_cols=211  Identities=10%  Similarity=0.107  Sum_probs=146.9

Q ss_pred             eeEec-cCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          138 FNVVT-SEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       138 v~~L~-~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      |..++ .+++++.++ +.++++|-||++||+   ...+.|.++|..+.+.+.||.+++.   .   ++++++      |+
T Consensus       127 v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------v~  191 (367)
T 3us3_A          127 VELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATFDS---K---VAKKLT------LK  191 (367)
T ss_dssp             EEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHTTTSCEEEECCH---H---HHHHHT------CC
T ss_pred             cEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhcCCcEEEEECCH---H---HHHHcC------CC
Confidence            56675 477888887 679999999999865   5688999999999999999998754   3   889998      77


Q ss_pred             CccEEEEeCCCCCCCCCcccccC-CCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCC----
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGE----  290 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G-~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~----  290 (423)
                      . |+|++|+++...   +..|.| .++.++|.+|+...  ..|....+|.++....+. +. ..++.+++|.+...    
T Consensus       192 ~-p~i~lf~~~~~~---~~~y~g~~~~~~~l~~fi~~~--~~p~v~elt~~~~~~~~~-~~-~~~~~~~~f~~~~~~~~~  263 (367)
T 3us3_A          192 L-NEIDFYEAFMEE---PVTIPDKPNSEEEIVNFVEEH--RRSTLRKLKPESMYETWE-DD-MDGIHIVAFAEEADPDGY  263 (367)
T ss_dssp             T-TCEEEECTTCSS---CEECSSSSCCHHHHHHHHHHT--CSCSEEECCGGGHHHHHH-SC-BTTEEEEEECCTTSHHHH
T ss_pred             C-CeEEEEcCCCCC---CeecCCCCCCHHHHHHHHHHc--CccceeecChhhHHHHHh-hc-cCCcEEEEEEcCCChhHH
Confidence            5 999999986432   568999 49999999999987  356655577665333332 21 12234444433211    


Q ss_pred             CCchHHHHHHHhccc--cceEEEEEcccccc--HHHHhhcCCC-CCCeEEEecCCCcc--eeEec---CCCChhHHHHHH
Q 014549          291 RASPFVRQISRNYWA--YASFAFVLWREEES--SIWWNTFEVE-SAPAIVFLKDPGVK--PVVYY---GSFNNSRLSEVM  360 (423)
Q Consensus       291 ~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~--~~l~~~f~v~-~~Ptl~lfk~~~~~--~~~y~---g~~~~~~l~~fi  360 (423)
                      .....++.+|.+|++  .+.|+.+...+-..  +.+.+.||+. ..|+++++......  ...+.   +.++.+.|.+|+
T Consensus       264 ~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~  343 (367)
T 3us3_A          264 EFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWL  343 (367)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHH
Confidence            122345678999987  68888886443211  1124569997 69999999754432  22234   368999999999


Q ss_pred             HhhccccCccc
Q 014549          361 EQNKLQELPQL  371 (423)
Q Consensus       361 ~~~~~~~lp~l  371 (423)
                      +...-..+..-
T Consensus       344 ~~~~~Gkl~p~  354 (367)
T 3us3_A          344 EDVLEGEINTE  354 (367)
T ss_dssp             HHHHHTSSCC-
T ss_pred             HHHHcCCcCcc
Confidence            99766655433

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.39  E-value=6.1e-13  Score=124.54  Aligned_cols=84  Identities=14%  Similarity=0.093  Sum_probs=73.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhh----ccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~----~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      .++++++.||||||++|+++.|.|+++|..+.    +.+.++.|||+   ...+++++|+      |.++||+++  +|.
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~---~~~~~~~~~~------V~~vPt~~i--~G~  205 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAY---ENPDIADKYG------VMSVPSIAI--NGY  205 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETT---TCHHHHHHTT------CCSSSEEEE--TTE
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECc---cCHHHHHHcC------CeeeCeEEE--CCE
Confidence            35678999999999999999999999999984    46899999999   4456999999      999999988  664


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHh
Q 014549          228 KSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       228 ~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .      .|.|.++.++|++|+.+.
T Consensus       206 ~------~~~G~~~~~~l~~~l~~~  224 (243)
T 2hls_A          206 L------VFVGVPYEEDFLDYVKSA  224 (243)
T ss_dssp             E------EEESCCCHHHHHHHHHHH
T ss_pred             E------EEeCCCCHHHHHHHHHHH
Confidence            3      599999999999999887

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.38  E-value=9.9e-14  Score=113.02  Aligned_cols=78  Identities=10%  Similarity=-0.015  Sum_probs=63.7

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-h--hhhHHHhhCCCCccccccCccEEEEeCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R--LATHLAERKPIGQIFFRRGLPSLVAFPPGCKS  229 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-~--~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~  229 (423)
                      +++.+|.||||||++|+++.|.|+++++.+.      .|||+.+ .  ...++|++++      |+++||+++  +|.  
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~------V~~~PT~~i--~G~--   75 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAG------ITSYPTWII--NGR--   75 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTT------CCSSSEEEE--TTE--
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcC------CeEeCEEEE--CCE--
Confidence            4567899999999999999999999986654      7888722 1  3466999999      999999877  542  


Q ss_pred             CCCcccccCCCCHHHHHHHHHH
Q 014549          230 SDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       230 ~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                           .|.|.++.+.|.+|+.-
T Consensus        76 -----~~~G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           76 -----TYTGVRSLEALAVASGY   92 (106)
T ss_dssp             -----EEESCCCHHHHHHHHTC
T ss_pred             -----EecCCCCHHHHHHHhCC
Confidence                 58999999999999843

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.36  E-value=2.9e-11  Score=113.59  Aligned_cols=211  Identities=13%  Similarity=0.195  Sum_probs=146.8

Q ss_pred             eeEec-cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~-~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.+|+ .++++++++++++++|-|+++||   ....+.|.++|+.+.+.+.||.+.-      ..++++++      +++
T Consensus         8 v~~l~s~~~~~~~l~~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~~------~~v~~~~~------~~~   72 (252)
T 2h8l_A            8 SVPLRTEEEFKKFISDKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTNV------ESLVNEYD------DNG   72 (252)
T ss_dssp             EEECCSHHHHHHHHTSSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEECC------HHHHHHHC------SSS
T ss_pred             ceeecCHHHHHHHhhcCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEECh------HHHHHHhC------CCC
Confidence            67785 45567778888999999999984   5678899999999998899998853      23888888      777


Q ss_pred             ccEEEEeCCCCCC---CCCcccc-cCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCC-
Q 014549          217 LPSLVAFPPGCKS---SDCMTRF-EGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER-  291 (423)
Q Consensus       217 ~Pti~~f~~g~~~---~~~~~~y-~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~-  291 (423)
                       |+|++|+++...   .+....| .|..+.++|.+|+...  .+|....+|.++. ..+ .+.+   .+++++....+. 
T Consensus        73 -p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~--~~Plv~e~t~~n~-~~~-~~~~---~~v~~~~~~~~~~  144 (252)
T 2h8l_A           73 -EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQEN--IFGICPHMTEDNK-DLI-QGKD---LLIAYYDVDYEKN  144 (252)
T ss_dssp             -EEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHH--SSCSSCEECTTTH-HHH-SSSS---EEEEEECCBTTTB
T ss_pred             -CcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhc--ccCCeeecccccH-hhh-cCCC---eEEEEeecchhhc
Confidence             999999975210   1225689 9999999999999988  3676666777663 333 2222   455555322111 


Q ss_pred             ------CchHHHHHHHhcccc---ceEEEEEccccccHHHHhhcCC--C--CCCeEEEecCCCcceeEecCCCChhH--H
Q 014549          292 ------ASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEV--E--SAPAIVFLKDPGVKPVVYYGSFNNSR--L  356 (423)
Q Consensus       292 ------~~~~~~~~a~~~~~~---~~f~~v~~~~~~~~~l~~~f~v--~--~~Ptl~lfk~~~~~~~~y~g~~~~~~--l  356 (423)
                            ....++.+|.+|++.   +.|+.+...  +-..+.+.||+  .  ..|+|+++.... ....+.++++.+.  |
T Consensus       145 ~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~--~~~~~~~~fgl~~~~~~~P~v~i~~~~~-~ky~~~~~~t~~~~~i  221 (252)
T 2h8l_A          145 AKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRK--TFSHELSDFGLESTAGEIPVVAIRTAKG-EKFVMQEEFSRDGKAL  221 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETT--TTHHHHGGGTCCCCSCSSCEEEEECTTS-CEEECCSCCCTTSHHH
T ss_pred             chhHHHHHHHHHHHHHHccccCceEEEEEEchH--HHHHHHHHcCCCCccCCCCEEEEEeCcC-cEecCCcccCcchHHH
Confidence                  122345588888876   888888643  22568899999  3  489999985432 3333567788888  9


Q ss_pred             HHHHHhhccccC-cccccc
Q 014549          357 SEVMEQNKLQEL-PQLRSV  374 (423)
Q Consensus       357 ~~fi~~~~~~~l-p~l~~~  374 (423)
                      .+|++...-..+ |.+.++
T Consensus       222 ~~F~~~~~~Gkl~~~~kSe  240 (252)
T 2h8l_A          222 ERFLQDYFDGNLKRYLKSE  240 (252)
T ss_dssp             HHHHHHHHHTCSCCCC---
T ss_pred             HHHHHHHHCCCccccccCC
Confidence            999999765555 334333

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.04  E-value=7.5e-14  Score=117.10  Aligned_cols=99  Identities=16%  Similarity=0.143  Sum_probs=79.9

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      .+......+++++|.||++||++|+.+.|.+   +++++.+.+.+.+..||++.+ ....++++++      |.++||++
T Consensus        11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~~~------v~~~Pt~~   83 (130)
T 2lst_A           11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTP-EGQELARRYR------VPGTPTFV   83 (130)
Confidence            4444456788999999999999999999999   999998888789999999633 3456899999      99999999


Q ss_pred             Ee--CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          222 AF--PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       222 ~f--~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|  .+|...  ....+.|..+.+.|.+++.+.
T Consensus        84 ~~d~~~G~~~--~~~~~~G~~~~~~l~~~l~~~  114 (130)
T 2lst_A           84 FLVPKAGAWE--EVGRLFGSRPRAEFLKELRQV  114 (130)
Confidence            99  445430  013578999999999998776

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.33  E-value=9.1e-13  Score=116.17  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=81.2

Q ss_pred             eEeccCCccccc----CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhh-----------
Q 014549          139 NVVTSEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLAT-----------  200 (423)
Q Consensus       139 ~~L~~~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~-----------  200 (423)
                      ..++..+|++.+    ..+++++|.|||+||++|+.+.+..   .++.+.+++.+.+..||++++....           
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~  108 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTE  108 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchh
Confidence            446677888777    5689999999999999999986666   7777777767899999998543210           


Q ss_pred             -----------HH-HhhCCCCccccccCccEEEEe-CCCCCCCCCcccccCCCC-HHHHHHHHHHh
Q 014549          201 -----------HL-AERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELS-VDAVTDWFATA  252 (423)
Q Consensus       201 -----------~l-~~~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~-~~~l~~fi~~~  252 (423)
                                 .+ +++|+      |.++||+++| ++|+.    ...+.|..+ .+.+.+|+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~------v~~~Pt~~lid~~G~~----~~~~~G~~~~~~~l~~~l~~~  164 (172)
T 3f9u_A          109 RTLRTVGDKWSYLQRVKFG------ANAQPFYVLIDNEGNP----LNKSYAYDEDISKYINFLQTG  164 (172)
T ss_dssp             EEEEEHHHHHHHHHHHHHS------CCCSSEEEEECTTSCB----SSCCBCSCCCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHcC------CCCcceEEEECCCCCE----EeeccCCCCCHHHHHHHHHHH
Confidence                       01 57777      9999999999 66655    346679888 99999999876

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.32  E-value=5.8e-13  Score=108.50  Aligned_cols=97  Identities=10%  Similarity=0.112  Sum_probs=79.9

Q ss_pred             eEec-cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccC
Q 014549          139 NVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRG  216 (423)
Q Consensus       139 ~~L~-~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~  216 (423)
                      ..|+ .++|+++++++++++|.|+|.|||.|+.+.|.++++++.  +.+.++.||.++++.. .+++++++      |++
T Consensus         9 ~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~------V~h   80 (112)
T 3iv4_A            9 IKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTN------VKH   80 (112)
T ss_dssp             EECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHT------CCC
T ss_pred             eecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhC------Ccc
Confidence            4554 467999998899999999999999999999999999984  6689999999965432 34899999      995


Q ss_pred             -ccEEEEeCCCCCCCCCccccc---CCCCHHHHHHHH
Q 014549          217 -LPSLVAFPPGCKSSDCMTRFE---GELSVDAVTDWF  249 (423)
Q Consensus       217 -~Pti~~f~~g~~~~~~~~~y~---G~~~~~~l~~fi  249 (423)
                       .||+++|++|+.      .++   |..+.++|.+.+
T Consensus        81 ~sPq~il~k~G~~------v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           81 ESPQAFYFVNGEM------VWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             CSSEEEEEETTEE------EEEEEGGGCSHHHHHHHT
T ss_pred             CCCeEEEEECCEE------EEEeeccccCHHHHHHhh
Confidence             999999999976      343   677888777653

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.31  E-value=7.1e-13  Score=109.23  Aligned_cols=87  Identities=18%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-----ceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-----ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-----~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      +....||+|||+||++|+.|.+.   ++..++..     +.+.+||.+++. ...++.+++      |.+.|||++|.+|
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~---i~~~~~~~a~~~~~~l~~vdv~~~~-~~~la~~~~------V~g~PT~i~f~~G   86 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAE---IAPQYPLTDEGRAAPVQRLQMRDPL-PPGLELARP------VTFTPTFVLMAGD   86 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHH---TTTTGGGSHHHHHSCEEEEETTSCC-CTTCBCSSC------CCSSSEEEEEETT
T ss_pred             cCCCEEEEEECCCCHHHHHHHHH---HHhhHHHhhhcccceEEEEECCCCC-chhHHHHCC------CCCCCEEEEEECC
Confidence            45689999999999999999863   33333332     688999998653 245778888      9999999999988


Q ss_pred             CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          227 CKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       227 ~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +.    ..+..|....+.+..|+.+.
T Consensus        87 ~e----v~Ri~G~~~~~~f~~~L~~~  108 (116)
T 3dml_A           87 VE----SGRLEGYPGEDFFWPMLARL  108 (116)
T ss_dssp             EE----EEEEECCCCHHHHHHHHHHH
T ss_pred             EE----EeeecCCCCHHHHHHHHHHH
Confidence            76    46788999999999999776

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.30  E-value=2.4e-12  Score=97.53  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      .|.||++||++|+.+.|.++++++.+.+.+.+..||      ..+++++++      |.++||+++  +|+.      .+
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~------~~~~~~~~~------v~~~Pt~~~--~G~~------~~   62 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK------EMDQILEAG------LTALPGLAV--DGEL------KI   62 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC------SHHHHHHHT------CSSSSCEEE--TTEE------EE
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec------CHHHHHHCC------CCcCCEEEE--CCEE------EE
Confidence            589999999999999999999999998778888888      235899999      999999998  6644      34


Q ss_pred             cCCC-CHHHHHHHH
Q 014549          237 EGEL-SVDAVTDWF  249 (423)
Q Consensus       237 ~G~~-~~~~l~~fi  249 (423)
                      .|.. +.+.|.+|+
T Consensus        63 ~G~~~~~~~l~~~l   76 (77)
T 1ilo_A           63 MGRVASKEEIKKIL   76 (77)
T ss_dssp             CSSCCCHHHHHHHC
T ss_pred             cCCCCCHHHHHHHh
Confidence            4887 899998875

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.28  E-value=1e-12  Score=115.48  Aligned_cols=99  Identities=16%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEe
Q 014549          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      ++|......+++++|.|||+||++|+.+.|.|+++++.....+.|..||++++..  .++..+++.    +.++||+++|
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~--~~~~~~~~~----~~~~Pt~~~~  110 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE--PKDEDFSPD----GGYIPRILFL  110 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGS--CSCGGGCTT----CSCSSEEEEE
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCch--HHHHHhccc----CCcCCeEEEE
Confidence            3454455678999999999999999999999999887766667889999984432  156777722    3679999999


Q ss_pred             -CCCCCCCCCcccccCC----------CCHHHHHHHHHHh
Q 014549          224 -PPGCKSSDCMTRFEGE----------LSVDAVTDWFATA  252 (423)
Q Consensus       224 -~~g~~~~~~~~~y~G~----------~~~~~l~~fi~~~  252 (423)
                       ++|+.    ...+.|.          .+.+.|++++.+.
T Consensus       111 d~~G~~----~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~  146 (164)
T 1sen_A          111 DPSGKV----HPEIINENGNPSYKYFYVSAEQVVQGMKEA  146 (164)
T ss_dssp             CTTSCB----CTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred             CCCCCE----EEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence             67765    2345563          7899999999876

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.27  E-value=1e-11  Score=107.64  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=78.4

Q ss_pred             Cccccc----CCCCcEEEEEe-cCCCccccccHHHH---HHHHHHhhccceEEEEEcccch--------hhhHHHhhCCC
Q 014549          145 DFPSIF----HDSKPWLIQVY-SDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIR--------LATHLAERKPI  208 (423)
Q Consensus       145 nf~~~v----~~~~~~lV~FY-apwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~--------~~~~l~~~~~~  208 (423)
                      ++.+.+    ..+++++|.|| ++||++|+.+.|.+   .++++.....+.+..||++++.        ....++++|+ 
T Consensus        35 ~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~-  113 (154)
T 2ju5_A           35 SYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK-  113 (154)
T ss_dssp             CHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC-
Confidence            454444    35789999999 99999999999999   7887776666899999998542        3457999999 


Q ss_pred             CccccccCccEEEEe-CCCCCCCCCcccccCCC--CHHHHHHHHHHh
Q 014549          209 GQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~--~~~~l~~fi~~~  252 (423)
                           |.++||+++| ++|+.    ...+ |..  +.+.+.+++.+.
T Consensus       114 -----v~~~Pt~~~~d~~G~~----~~~~-G~~~~~~~~l~~~l~~~  150 (154)
T 2ju5_A          114 -----VTGFPELVFIDAEGKQ----LARM-GFEPGGGAAYVSKVKSA  150 (154)
T ss_dssp             -----CCSSSEEEEECTTCCE----EEEE-CCCTTCHHHHHHHHHHH
T ss_pred             -----CCCCCEEEEEcCCCCE----EEEe-cCCCCCHHHHHHHHHHH
Confidence                 9999999999 66655    4456 887  899999999776

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.24  E-value=2.5e-11  Score=101.61  Aligned_cols=89  Identities=13%  Similarity=0.099  Sum_probs=75.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-------------------hhhHHHhhCCCCccc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-------------------LATHLAERKPIGQIF  212 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-------------------~~~~l~~~~~~~~~~  212 (423)
                      .+++++|.||++||++|+.+.|.++++++++. .+.+..|+++.+.                   ....++++++     
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----   96 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN-----   96 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT-----
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcC-----
Confidence            56899999999999999999999999999988 7899999998521                   1356888888     


Q ss_pred             cccCccEEEEeC-CCCCCCCCccccc---CCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFP-PGCKSSDCMTRFE---GELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~-~g~~~~~~~~~y~---G~~~~~~l~~fi~~~  252 (423)
                       |.++|+++++. +|..    . .+.   |..+.+.|.+++.+.
T Consensus        97 -i~~~P~~~lid~~G~i----~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           97 -VPWQPAFVFYRADGTS----T-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             -CCSSSEEEEECTTSCE----E-EECCSSSCCCHHHHHHHHHHC
T ss_pred             -CCCCCEEEEECCCCcE----E-EEEcCCCccCHHHHHHHHHHH
Confidence             89999999994 5543    3 688   999999999999765

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.23  E-value=2.6e-11  Score=102.91  Aligned_cols=103  Identities=15%  Similarity=0.111  Sum_probs=81.6

Q ss_pred             EeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-----------------------
Q 014549          140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-----------------------  196 (423)
Q Consensus       140 ~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-----------------------  196 (423)
                      .++.+.+....-.+++++|.||++||++|+.+.|.++++++.+.+.+.|..|+++..                       
T Consensus        16 ~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (148)
T 2b5x_A           16 WLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIF   95 (148)
T ss_dssp             EESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEE
T ss_pred             cccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceE
Confidence            455555543334578999999999999999999999999999987799999997531                       


Q ss_pred             -hhhhHHHhhCCCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          197 -RLATHLAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       197 -~~~~~l~~~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       .....+++.|+      |.++|+++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus        96 ~d~~~~~~~~~~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  143 (148)
T 2b5x_A           96 VDSDHALTDAFE------NEYVPAYYVFDKTGQL----RHFQAGGSGMKMLEKRVNRV  143 (148)
T ss_dssp             ECSSCHHHHHTC------CCCSSEEEEECTTCBE----EEEEESCSTTHHHHHHHHHH
T ss_pred             ECCchhHHHHhC------CCCCCEEEEECCCCcE----EEEecCCCCHHHHHHHHHHH
Confidence             12356888888      9999999999 55544    34677988999999999876

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.22  E-value=3.8e-11  Score=100.21  Aligned_cols=90  Identities=14%  Similarity=0.009  Sum_probs=74.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--------------------hhhhHHHhhCCCCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------------------RLATHLAERKPIGQI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--------------------~~~~~l~~~~~~~~~  211 (423)
                      .+++++|.||++||++|+.+.|.++++++.+. .+.+..|+++++                    .....+++.|+    
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----   98 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFG----   98 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTT----
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcC----
Confidence            56899999999999999999999999999988 789999998642                    12355788888    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++|+++++.+++..   . .+.|..+.+.|.+++.+.
T Consensus        99 --i~~~P~~~~id~~g~i---~-~~~g~~~~~~l~~~l~~~  133 (136)
T 1zzo_A           99 --VTQQPAYAFVDPHGNV---D-VVRGRMSQDELTRRVTAL  133 (136)
T ss_dssp             --CCSSSEEEEECTTCCE---E-EEESCCCHHHHHHHHHHH
T ss_pred             --CCCCceEEEECCCCCE---E-EEecCCCHHHHHHHHHHH
Confidence              8999999999544332   3 688999999999999876

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.19  E-value=2.4e-10  Score=107.22  Aligned_cols=205  Identities=14%  Similarity=0.116  Sum_probs=140.7

Q ss_pred             eeEecc-CCcccccCC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          138 FNVVTS-EDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       138 v~~L~~-~nf~~~v~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      |.+|++ +++++.+++ +++|+|-|++++|   ....+.|.++|+.+.+.+.||.+.-.      +++++++      ++
T Consensus         8 v~~l~s~~~~~~~~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~~~------~v~~~~~------v~   72 (250)
T 3ec3_A            8 SKEILTLKQVQEFLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTFST------EIAKFLK------VS   72 (250)
T ss_dssp             SEECCCHHHHHHHHHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEECCH------HHHHHHT------CC
T ss_pred             ceecCCHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEECcH------HHHHHcC------CC
Confidence            567755 778888877 8999999999985   57889999999999999999987532      3788888      77


Q ss_pred             CccEEEEeCCCCC---CCCCccccc--CCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecC-C
Q 014549          216 GLPSLVAFPPGCK---SSDCMTRFE--GELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT-G  289 (423)
Q Consensus       216 ~~Pti~~f~~g~~---~~~~~~~y~--G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~-~  289 (423)
                      + |+|++|+++..   ..+....|.  |.++.++|.+|+...  .+|....+|.++....+ .+.+   ..++++..+ .
T Consensus        73 ~-p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~--~~Plv~e~t~~n~~~~~-~~~~---l~~~~~~~d~~  145 (250)
T 3ec3_A           73 L-GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKH--ALPLVGHRKTSNDAKRY-SKRP---LVVVYYSVDFS  145 (250)
T ss_dssp             S-SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHH--SSCTEEEECTTTHHHHS-CSSS---EEEEEECCCCS
T ss_pred             C-CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHc--CCCceeecCccchhhhh-ccCc---cEEEEEecccc
Confidence            7 99999997421   011245788  589999999999988  46776667766533323 2222   334444311 1


Q ss_pred             CC-------CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC--C-CeEEEecCCCcceeEec-CCCChhHHHH
Q 014549          290 ER-------ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--A-PAIVFLKDPGVKPVVYY-GSFNNSRLSE  358 (423)
Q Consensus       290 ~~-------~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~-Ptl~lfk~~~~~~~~y~-g~~~~~~l~~  358 (423)
                      +.       ....++.+|.+|+ .+.|+.+...+  -....+.||+..  . |.++++... .....+. +.++.+.|.+
T Consensus       146 ~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~--~~~~l~~fgl~~~~~~p~~~~~~~~-~~ky~~~~~~~t~~~i~~  221 (250)
T 3ec3_A          146 FDYRTATQFWRNKVLEVAKDFP-EYTFAIADEED--YATEVKDLGLSESGGDVNAAILDES-GKKFAMEPEEFDSDALRE  221 (250)
T ss_dssp             TTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTT--THHHHHHTTCSSCSCSCEEEEECTT-SCEEECCCCSCCHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHH--HHHHHHHcCCCccCCCcEEEEEcCC-CceecCCcccCCHHHHHH
Confidence            11       1233456888898 88888875322  245678999974  3 477776533 3333334 6789999999


Q ss_pred             HHHhhccccC
Q 014549          359 VMEQNKLQEL  368 (423)
Q Consensus       359 fi~~~~~~~l  368 (423)
                      |++...-..+
T Consensus       222 Fv~~~~~Gkl  231 (250)
T 3ec3_A          222 FVMAFKKGKL  231 (250)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHCCCc
Confidence            9998765544

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.16  E-value=6.4e-11  Score=100.09  Aligned_cols=88  Identities=9%  Similarity=0.126  Sum_probs=73.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhh-ccceEEEEEcccch----------------------hhhHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIR----------------------LATHLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-~~~~~~~Vdc~~~~----------------------~~~~l~~~~~~  208 (423)
                      .+++++|.||++||++|+.+.|.++++++.+. ..+.|..|+++...                      ....+++.|+ 
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH-  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC-
Confidence            67899999999999999999999999999997 45899999997410                      1346889998 


Q ss_pred             CccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          209 GQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                           |.++|+++++ ++|..    ...+.|..+.+.|.+++
T Consensus       112 -----v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 -----IITIPTSFLLNEKGEI----EKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             -----CCEESEEEEECTTCCE----EEEEESCCCHHHHHHHH
T ss_pred             -----cCccCeEEEEcCCCcE----EEEEcCCcCHHHHHHhh
Confidence                 9999999999 56654    34678999999998876

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.12  E-value=4.4e-11  Score=103.76  Aligned_cols=104  Identities=15%  Similarity=0.082  Sum_probs=76.8

Q ss_pred             eEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccc---------------------
Q 014549          139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI---------------------  196 (423)
Q Consensus       139 ~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~---------------------  196 (423)
                      ..++.+.+......+++++|.||++||++|+.+.|.+++++++++.. +.|..|+++..                     
T Consensus        24 ~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (164)
T 2h30_A           24 KTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKL  103 (164)
T ss_dssp             EETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTS
T ss_pred             CCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcc
Confidence            44555555544446789999999999999999999999999887432 45544443210                     


Q ss_pred             ----hhhhHHHhhCCCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          197 ----RLATHLAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       197 ----~~~~~l~~~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          .....++++|+      |.++||++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus       104 ~~~~d~~~~~~~~~~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~~  154 (164)
T 2h30_A          104 PVVTDNGGTIAQNLN------ISVYPSWALIGKDGDV----QRIVKGSINEAQALALIRNP  154 (164)
T ss_dssp             CEEECTTCHHHHHTT------CCSSSEEEEECTTSCE----EEEEESCCCHHHHHHHHHCT
T ss_pred             eEEEcCchHHHHHcC------CCccceEEEECCCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence                02345888888      9999999999 56654    34677999999999999876

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.10  E-value=2.1e-11  Score=116.36  Aligned_cols=76  Identities=11%  Similarity=-0.010  Sum_probs=61.7

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc---hhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~---~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      .+|+||||||+||++++|.|+++|+++      ..|||+..   ..++++|++++      |+++||+++  +|+     
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l------~~Vd~d~~d~~~~~~~la~~~g------I~~vPT~~i--~G~-----  260 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQV------PYVECSPNGPGTPQAQECTEAG------ITSYPTWII--NGR-----  260 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGS------CEEESCSSCSSSCCCHHHHTTT------CCSTTEEEE--TTE-----
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHc------CEEEEeecCchhhHHHHHHHcC------CcccCeEEE--CCE-----
Confidence            469999999999999999999998655      36888732   12577999999      999999655  552     


Q ss_pred             cccccCCCCHHHHHHHHHHh
Q 014549          233 MTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi~~~  252 (423)
                        .|.|.++.++|.+|+.-.
T Consensus       261 --~~~G~~~~~~L~~~l~~~  278 (291)
T 3kp9_A          261 --TYTGVRSLEALAVASGYP  278 (291)
T ss_dssp             --EEESCCCHHHHHHHTCCC
T ss_pred             --EecCCCCHHHHHHHHCCC
Confidence              599999999999998543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.10  E-value=1.9e-10  Score=99.67  Aligned_cols=97  Identities=10%  Similarity=0.067  Sum_probs=73.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-hhHHHhhCCCCc-----------cc------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-ATHLAERKPIGQ-----------IF------  212 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-~~~l~~~~~~~~-----------~~------  212 (423)
                      .+++++|.||++||++|+.+.|.+.++++.+.+. +.|..|+++++.. .....+++++..           .+      
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            5689999999999999999999999999999876 8999999985332 112222221110           00      


Q ss_pred             cccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|.++|+++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus       113 ~i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  149 (165)
T 3or5_A          113 GITGIPTSFVIDASGNV----SGVIVGPRSKADFDRIVKMA  149 (165)
T ss_dssp             CSCSSSEEEEECTTSBE----EEEECSCCCHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence            28899999998 55543    35677999999999999887

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.09  E-value=2.7e-10  Score=97.69  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=74.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCC---------------cccc--
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIG---------------QIFF--  213 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~---------------~~~~--  213 (423)
                      .+++++|.||++||++|+...|.++++++.+++. +.|..|+++........++++++.               ..|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            4689999999999999999999999999998554 799999997443333333333322               1122  


Q ss_pred             ccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +.++|+++++ ++|..    ...|.|..+.+.|.+++.+.
T Consensus       103 v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  138 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGY----RQTITGEVNEKSLTDAVKLA  138 (151)
T ss_dssp             SCCSSEEEEEETTTTE----EEECCSCCCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcE----EEEECCCCCHHHHHHHHHHH
Confidence            7899999988 55654    45778999999999999876

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.08  E-value=6e-11  Score=102.69  Aligned_cols=90  Identities=10%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeC-CCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-PGCK  228 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~-~g~~  228 (423)
                      .+++++||.|||+||++|+.+.|.+.+..+..+- ...|..|+.+.+.  .+++.+++      |.++||+++|. +|+.
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~--~~~~~~~~------v~~~PT~~f~~~~G~~  113 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHET--TDKNLSPD------GQYVPRIMFVDPSLTV  113 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCC--SCGGGCTT------CCCSSEEEEECTTSCB
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCc--hhhHhhcC------CCCCCEEEEECCCCCE
Confidence            6789999999999999999999999875322111 1356777775321  23567777      89999999998 6654


Q ss_pred             CCCCcccccCC----------CCHHHHHHHHHHh
Q 014549          229 SSDCMTRFEGE----------LSVDAVTDWFATA  252 (423)
Q Consensus       229 ~~~~~~~y~G~----------~~~~~l~~fi~~~  252 (423)
                          .....|.          .+.+.+++.+.+.
T Consensus       114 ----v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a  143 (151)
T 3ph9_A          114 ----RADIAGRYSNRLYTYEPRDLPLLIENMKKA  143 (151)
T ss_dssp             ----CTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred             ----EEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence                2344455          3456666666655

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.07  E-value=3.7e-10  Score=96.66  Aligned_cols=91  Identities=11%  Similarity=0.168  Sum_probs=75.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch-------------------hhhHHHhhCCCCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR-------------------LATHLAERKPIGQI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~-------------------~~~~l~~~~~~~~~  211 (423)
                      .+++++|.||++||++|+.+.|.+.++++.+.+. +.|..|++++..                   ....+++.|+    
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  100 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD----  100 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTT----
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcC----
Confidence            4689999999999999999999999999999874 799999987432                   0245888888    


Q ss_pred             ccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++|+++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus       101 --v~~~P~~~lid~~G~i----~~~~~G~~~~~~l~~~l~~l  136 (151)
T 2f9s_A          101 --VSPLPTTFLINPEGKV----VKVVTGTMTESMIHDYMNLI  136 (151)
T ss_dssp             --CCSSCEEEEECTTSEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             --CCCCCeEEEECCCCcE----EEEEeCCCCHHHHHHHHHHH
Confidence              9999999999 55544    34677999999999999877

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.06  E-value=4.2e-10  Score=95.47  Aligned_cols=91  Identities=8%  Similarity=-0.045  Sum_probs=71.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-hhH---------------------HHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-ATH---------------------LAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-~~~---------------------l~~~~~~  208 (423)
                      .+++++|.||++||++|+.+.|.+.++++.+.+. +.|..|+++.+.. ...                     +++.|+ 
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD-  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC-
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC-
Confidence            5689999999999999999999999999999876 8999999984321 111                     677777 


Q ss_pred             CccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          209 GQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                           |.++|+++++ ++|..    ...+.|..+.+.+++.+.+.
T Consensus       109 -----i~~~P~~~lid~~G~i----~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A          109 -----IYATPVLYVLDKNKVI----IAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             -----CCSSCEEEEECTTCBE----EEESCCGGGHHHHHHHHHHH
T ss_pred             -----cCCCCEEEEECCCCcE----EEecCCHHHHHHHHHHHHHH
Confidence                 8999999999 55544    34566777777777776554

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.06  E-value=4e-10  Score=93.78  Aligned_cols=90  Identities=14%  Similarity=0.047  Sum_probs=72.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-------------------------hhhhHHHhhC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-------------------------RLATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-------------------------~~~~~l~~~~  206 (423)
                      .+++++|.||++||++|+...|.++++++.+...+.+..|++...                         .....+++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            468999999999999999999999999999766778888864310                         0134578888


Q ss_pred             CCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       207 ~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      +      |.++|+++++ ++|..    ...+.|..+.+.|.+++.+
T Consensus       101 ~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A          101 G------VRSYPTQAFIDKEGKL----VKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             T------CCSSSEEEEECTTCCE----EEEEESCCCHHHHHHHHHH
T ss_pred             C------cccCCeEEEECCCCcE----EEeecCCCcHHHHHHHHHh
Confidence            8      9999999999 56654    4567899999999998865

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.04  E-value=2e-10  Score=93.26  Aligned_cols=78  Identities=15%  Similarity=0.199  Sum_probs=66.8

Q ss_pred             CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCc
Q 014549          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (423)
Q Consensus       154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~  233 (423)
                      ...++.||+|||+.|+.+.|..+++++++.  +.+..||.+++   ++++++|+      ++ +|+|++|.+|+.     
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d---~~l~~~yg------v~-VP~l~~~~dG~~-----   91 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGN---EHLTRLYN------DR-VPVLFAVNEDKE-----   91 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTC---HHHHHHST------TS-CSEEEETTTTEE-----
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCC---HHHHHHhC------CC-CceEEEEECCEE-----
Confidence            356899999999999999999999998864  88999999944   45889998      87 999999998864     


Q ss_pred             ccccCCCCHHHHHHHH
Q 014549          234 TRFEGELSVDAVTDWF  249 (423)
Q Consensus       234 ~~y~G~~~~~~l~~fi  249 (423)
                       .+.|..+.+.|.+|+
T Consensus        92 -v~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           92 -LCHYFLDSDVIGAYL  106 (107)
T ss_dssp             -EECSSCCCHHHHHHH
T ss_pred             -EEecCCCHHHHHHHh
Confidence             356888889998886

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.03  E-value=8.3e-10  Score=93.58  Aligned_cols=88  Identities=13%  Similarity=0.046  Sum_probs=71.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHh-hcc-ceEEEEEcccchh----------------------hhHHHhhCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL-EGI-ANTGMVELGDIRL----------------------ATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l-~~~-~~~~~Vdc~~~~~----------------------~~~l~~~~~  207 (423)
                      .+++++|.||++||++|+.+.|.+.++++.+ .+. +.|..|+++.+..                      ...+++.|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            5689999999999999999999999999999 665 7899999885321                      346889998


Q ss_pred             CCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          208 IGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       208 ~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                            |.++|+++++ ++|..      .+... +.+.+.+++.+.
T Consensus       112 ------v~~~P~~~lid~~G~i------~~~~~-~~~~l~~~l~~l  144 (148)
T 3fkf_A          112 ------ILTLPTNILLSPTGKI------LARDI-QGEALTGKLKEL  144 (148)
T ss_dssp             ------CCSSSEEEEECTTSBE------EEESC-CHHHHHHHHHHH
T ss_pred             ------CCCcCEEEEECCCCeE------EEecC-CHHHHHHHHHHH
Confidence                  9999999999 55543      33333 788888888765

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.03  E-value=9.5e-10  Score=94.08  Aligned_cols=91  Identities=14%  Similarity=0.010  Sum_probs=72.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch--------------------hhhHHHhhCCCCc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR--------------------LATHLAERKPIGQ  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~--------------------~~~~l~~~~~~~~  210 (423)
                      .+++++|.||++||++|+.+.|.+.++++.+.+. +.|..|+.+.+.                    ....+++.|+   
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  103 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFG---  103 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHT---
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcC---
Confidence            5689999999999999999999999999999875 677666532110                    2345888888   


Q ss_pred             cccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |.++|+++++ ++|..    ...|.|..+.+.|.+++.+.
T Consensus       104 ---i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  139 (153)
T 2l5o_A          104 ---TQVYPTSVLIGKKGEI----LKTYVGEPDFGKLYQEIDTA  139 (153)
T ss_dssp             ---CCSSSEEEEECSSSCC----CEEEESSCCHHHHHHHHHHH
T ss_pred             ---CCccCeEEEECCCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence               8999999999 55544    44688999999999999877

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.02  E-value=1e-09  Score=93.78  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh--------------------hhHHHhhCCCCc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL--------------------ATHLAERKPIGQ  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~--------------------~~~l~~~~~~~~  210 (423)
                      .+++++|.||++||++|+.+.|.++++++.+.+. +.|..|+++.+..                    ...+++.|+   
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  105 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL---  105 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT---
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC---
Confidence            4689999999999999999999999999998875 7999999985431                    125888888   


Q ss_pred             cccccCccEEEEeC-CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |.++|+++++. +|..    ...+.|..+.+.|.+++.+.
T Consensus       106 ---v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  141 (152)
T 2lja_A          106 ---INGIPRFILLDRDGKI----ISANMTRPSDPKTAEKFNEL  141 (152)
T ss_dssp             ---CCSSCCEEEECTTSCE----EESSCCCTTCHHHHHHHHHH
T ss_pred             ---cCCCCEEEEECCCCeE----EEccCCCCCHHHHHHHHHHH
Confidence               99999999997 5544    34566888899999999876

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.02  E-value=6.1e-11  Score=104.87  Aligned_cols=76  Identities=17%  Similarity=0.288  Sum_probs=62.5

Q ss_pred             cCCcccccCCCCcEEEEEecCCCccccccHH-HH--HHHHHHhhccceEEEEEcccchhhhHHHhhC--------CCCcc
Q 014549          143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQI  211 (423)
Q Consensus       143 ~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p-~~--~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~--------~~~~~  211 (423)
                      .+.|......++++||.||++||++|+.|.| .|  .++++.+.+.+.+.+||.+++   +++++.|        +    
T Consensus        29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~---~~l~~~y~~~~q~~~g----  101 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER---PDIDNIYMTVCQIILG----  101 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC---HHHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc---CcHHHHHHHHHHHHcC----
Confidence            4456666678999999999999999999999 44  578888888889999999944   4577777        7    


Q ss_pred             ccccCccEEEEeCCCC
Q 014549          212 FFRRGLPSLVAFPPGC  227 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~  227 (423)
                        |.++||+++|.+++
T Consensus       102 --v~g~Pt~v~l~~dG  115 (173)
T 3ira_A          102 --RGGWPLNIIMTPGK  115 (173)
T ss_dssp             --CCCSSEEEEECTTS
T ss_pred             --CCCCcceeeECCCC
Confidence              88999999997443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.01  E-value=9e-10  Score=94.44  Aligned_cols=87  Identities=18%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc--cc----------------------hhhhHHHhhCCCC
Q 014549          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG--DI----------------------RLATHLAERKPIG  209 (423)
Q Consensus       154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~--~~----------------------~~~~~l~~~~~~~  209 (423)
                      ++++|.||++||++|+...|.+.++++++  .+.|..|+++  +.                      .....+++.|+  
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK--  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS--
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC--
Confidence            89999999999999999999999999999  6788999992  10                      03456888888  


Q ss_pred             ccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 QIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          |.++|+++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus       107 ----v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  142 (154)
T 3ia1_A          107 ----VLGQPWTFVVDREGKV----VALFAGRAGREALLDALLLA  142 (154)
T ss_dssp             ----BCSSCEEEEECTTSEE----EEEEESBCCHHHHHHHHHHT
T ss_pred             ----CCcccEEEEECCCCCE----EEEEcCCCCHHHHHHHHHhc
Confidence                9999998888 55544    45677999999999999887

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.00  E-value=1.4e-09  Score=92.98  Aligned_cols=91  Identities=12%  Similarity=0.058  Sum_probs=73.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh-------------------hHHHhhCCCCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA-------------------THLAERKPIGQI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~-------------------~~l~~~~~~~~~  211 (423)
                      .+++++|.||++||++|+.+.|.+.++++.+.+. +.|..|+++.+...                   ..+++.|+    
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  102 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYG----  102 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTT----
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcC----
Confidence            4679999999999999999999999999999876 78999998844311                   15778888    


Q ss_pred             ccccCccEEEEe-CCCCCCCCCcccccCC--CCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGE--LSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f-~~g~~~~~~~~~y~G~--~~~~~l~~fi~~~  252 (423)
                        |.++|+++++ ++|..    ...+.|.  .+.+.|.+++.+.
T Consensus       103 --v~~~P~~~lid~~G~i----~~~~~g~~~~~~~~l~~~i~~~  140 (152)
T 3gl3_A          103 --VKGMPTSFLIDRNGKV----LLQHVGFRPADKEALEQQILAA  140 (152)
T ss_dssp             --CCSSSEEEEECTTSBE----EEEEESCCTTTHHHHHHHHHHH
T ss_pred             --CCCCCeEEEECCCCCE----EEEEccCCCcCHHHHHHHHHHH
Confidence              8999998888 55543    3456674  3568999999877

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.99  E-value=1.2e-08  Score=101.59  Aligned_cols=202  Identities=12%  Similarity=0.123  Sum_probs=119.8

Q ss_pred             eeEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.+++. ++++. +.+++.++|.||+++|..   ..+.|.++|..+.+...|+.+.+.       ++++++      +++
T Consensus       120 v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~---~~~~f~~~A~~~~~~~~F~~~~~~-------~~~~~~------v~~  182 (382)
T 2r2j_A          120 IQEIRDLAEITT-LDRSKRNIIGYFEQKDSD---NYRVFERVANILHDDCAFLSAFGD-------VSKPER------YSG  182 (382)
T ss_dssp             CEEC-------------CCEEEEEESCSSSH---HHHHHHHHHHHHTTTCEEEEEESC-------C--------------
T ss_pred             ceecCCHHHHHH-hcCCCCEEEEEECCCCCh---hHHHHHHHHHHhhccceEEEEehh-------hHHhhC------CCC
Confidence            455643 46777 677889999999988654   467899999999998899988874       566677      889


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCC-CHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCC-Cch
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER-ASP  294 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~-~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~-~~~  294 (423)
                      +| +++++.+..  .....|.|.+ +.++|.+|+...  ..|....+|.++ ...+....  ..++++|+...... ...
T Consensus       183 ~p-i~~~~~~~~--~~~~~y~g~~~~~~~l~~fi~~~--~~p~v~elt~~~-~~~~~~~~--~~~~v~f~~~~~~~~~~~  254 (382)
T 2r2j_A          183 DN-IIYKPPGHS--APDMVYLGAMTNFDVTYNWIQDK--CVPLVREITFEN-GEELTEEG--LPFLILFHMKEDTESLEI  254 (382)
T ss_dssp             CE-EEEECSSSS--SCCEECCSCTTCHHHHHHHHHHH--HSCSSEECCHHH-HHHHHTTC--CCEEEEEECTTCCHHHHH
T ss_pred             Cc-eEECCCCCC--CcCcccCCCCCCHHHHHHHHHhc--ccCceEecChhh-HHHHhcCC--CcEEEEEecCCchHHHHH
Confidence            99 666655321  1246899998 999999999987  355555566655 33343321  22445555432111 111


Q ss_pred             HHH---HHHHhccccceEEEEEccccccHHHHhhcCCC--CCCeEEEecCCCcceeEe---cCCCChhHHHHHHHhhccc
Q 014549          295 FVR---QISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY---YGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       295 ~~~---~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~--~~Ptl~lfk~~~~~~~~y---~g~~~~~~l~~fi~~~~~~  366 (423)
                      +..   ..+.++++.+.|+.+...  ....+++.||++  ..|+|+++.....  ..|   .+.++.+.|.+|++...-.
T Consensus       255 ~~~~~~~~~~~~~~~i~f~~id~~--~~~~~~~~~gl~~~~~P~i~i~~~~~~--y~~~~~~~~~~~~~i~~F~~d~~~G  330 (382)
T 2r2j_A          255 FQNEVARQLISEKGTINFLHADCD--KFRHPLLHIQKTPADCPVIAIDSFRHM--YVFGDFKDVLIPGKLKQFVFDLHSG  330 (382)
T ss_dssp             HHHHHHHHTGGGTTTSEEEEEETT--TTHHHHHHTTCCGGGCSEEEEECSSCE--EECCCSGGGGSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCeeEEEEEchH--HhHHHHHHcCCCccCCCEEEEEcchhc--CCCCccccccCHHHHHHHHHHHHCC
Confidence            212   234466677888888633  235678999997  4899988754221  222   3445678999999987655


Q ss_pred             cC
Q 014549          367 EL  368 (423)
Q Consensus       367 ~l  368 (423)
                      .+
T Consensus       331 kl  332 (382)
T 2r2j_A          331 KL  332 (382)
T ss_dssp             TT
T ss_pred             Cc
Confidence            55

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.96  E-value=5.2e-09  Score=98.07  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=98.3

Q ss_pred             CCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEE
Q 014549          256 LPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV  335 (423)
Q Consensus       256 ~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~  335 (423)
                      .|....+++.+.++.|+...  ..++|.||.+.+......+..+|..+++.+.|+.+.     ...++++|+++. |+|+
T Consensus         5 gP~v~~l~s~~~~~~~l~~~--~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~~-----~~~v~~~~~~~~-p~i~   76 (252)
T 2h8l_A            5 SPASVPLRTEEEFKKFISDK--DASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTN-----VESLVNEYDDNG-EGII   76 (252)
T ss_dssp             -CCEEECCSHHHHHHHHTSS--SCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEEC-----CHHHHHHHCSSS-EEEE
T ss_pred             CCCceeecCHHHHHHHhhcC--CeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEEC-----hHHHHHHhCCCC-CcEE
Confidence            56666677666678888653  236777787543334466777899998999999873     356999999985 9999


Q ss_pred             EecC------CCcceeEe-cCCCChhHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEEcc
Q 014549          336 FLKD------PGVKPVVY-YGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR  404 (423)
Q Consensus       336 lfk~------~~~~~~~y-~g~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~  404 (423)
                      +|++      .+..++.| .|+++.+.|.+||..+.+|++++++..+...+. ..            ++|++++..
T Consensus        77 ~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~-~~------------~~~v~~~~~  139 (252)
T 2h8l_A           77 LFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQ-GK------------DLLIAYYDV  139 (252)
T ss_dssp             EECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHS-SS------------SEEEEEECC
T ss_pred             EEcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhc-CC------------CeEEEEeec
Confidence            9986      24567889 999999999999999999999999999988762 11            488887753

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.94  E-value=1.1e-09  Score=95.58  Aligned_cols=89  Identities=16%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--------------------hhhhHHHhhCCCCc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------------------RLATHLAERKPIGQ  210 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--------------------~~~~~l~~~~~~~~  210 (423)
                      ..+++++|.||++||++|+.+.|.+++++++   .+.|..|+++++                    .....+++.|+   
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  122 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG---  122 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT---
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC---
Confidence            4688999999999999999999999999876   467778875421                    12345788888   


Q ss_pred             cccccCccEE-EEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSL-VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti-~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |.++|+. ++.++|..    ...+.|..+.+.+.+++.+.
T Consensus       123 ---v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  158 (168)
T 2b1k_A          123 ---VYGAPETFLIDGNGII----RYRHAGDLNPRVWEEEIKPL  158 (168)
T ss_dssp             ---CCSSSEEEEECTTSBE----EEEEESCCCHHHHHHTTHHH
T ss_pred             ---ccccCEEEEECCCCeE----EEEEeCCCCHHHHHHHHHHH
Confidence               8999955 44556654    34677999999999988766

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.94  E-value=5.9e-09  Score=97.64  Aligned_cols=144  Identities=12%  Similarity=0.057  Sum_probs=105.4

Q ss_pred             CCceeecccchhhhhhhhh-cCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeE
Q 014549          256 LPRIFYYTKESMGKNFLAK-TGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAI  334 (423)
Q Consensus       256 ~p~~~~it~~~~~~~fl~~-~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl  334 (423)
                      .|....+++.+.++.|++. ..  .++|.||.+.+......+..+|..+++.+.|+.+.     +.+++++|+++. |+|
T Consensus         5 gP~v~~l~s~~~~~~~~~~~~~--v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t~-----~~~v~~~~~v~~-p~i   76 (250)
T 3ec3_A            5 SPPSKEILTLKQVQEFLKDGDD--VVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTF-----STEIAKFLKVSL-GKL   76 (250)
T ss_dssp             CCSSEECCCHHHHHHHHHHCSS--CEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEEC-----CHHHHHHHTCCS-SEE
T ss_pred             CCCceecCCHHHHHHHHhcCCC--eEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEEC-----cHHHHHHcCCCC-CeE
Confidence            5666667765557788765 33  35666777544445566788898998999999873     356889999976 999


Q ss_pred             EEecCC------CcceeEec--CCCChhHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEEccC-
Q 014549          335 VFLKDP------GVKPVVYY--GSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-  405 (423)
Q Consensus       335 ~lfk~~------~~~~~~y~--g~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~~-  405 (423)
                      ++|+++      +..++.|.  |.++.+.|.+||..+.+|++++++..+...+. ..       +    ++|++++..+ 
T Consensus        77 vlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~-~~-------~----~l~~~~~~~d~  144 (250)
T 3ec3_A           77 VLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRY-SK-------R----PLVVVYYSVDF  144 (250)
T ss_dssp             EEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHS-CS-------S----SEEEEEECCCC
T ss_pred             EEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhh-cc-------C----ccEEEEEeccc
Confidence            999863      45678888  47899999999999999999999999987664 11       1    5888887532 


Q ss_pred             ----ChhhHHHHHHHhhh
Q 014549          406 ----SPELNKMREVSISA  419 (423)
Q Consensus       406 ----~~~~~~~~~~~~~~  419 (423)
                          ....+++++.++++
T Consensus       145 ~~~~~~~~~~~~~~~~~v  162 (250)
T 3ec3_A          145 SFDYRTATQFWRNKVLEV  162 (250)
T ss_dssp             STTTHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHH
Confidence                22345566666554

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.93  E-value=1.6e-09  Score=92.93  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=69.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--------------------hhhHHHhhCCCCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIGQI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--------------------~~~~l~~~~~~~~~  211 (423)
                      .+++++|.||++||++|+.+.|.++++++.  +.+.+..|+++++.                    ....+++.|+    
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  114 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWG----  114 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTT----
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcC----
Confidence            478999999999999999999999999876  55788888764221                    2345788888    


Q ss_pred             ccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++|+++++ ++|..    ...+.|..+.+.|.+++.+.
T Consensus       115 --v~~~P~~~~id~~G~i----~~~~~g~~~~~~l~~~l~~~  150 (156)
T 1kng_A          115 --VYGVPETFVVGREGTI----VYKLVGPITPDNLRSVLLPQ  150 (156)
T ss_dssp             --CCSSCEEEEECTTSBE----EEEEESCCCHHHHHHTHHHH
T ss_pred             --cCccCeEEEEcCCCCE----EEEEeCCCCHHHHHHHHHHH
Confidence              8999976666 56654    34577999999999988765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.92  E-value=3.7e-09  Score=91.83  Aligned_cols=88  Identities=9%  Similarity=0.086  Sum_probs=71.9

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc------------------cchhh--------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG------------------DIRLA--------------  199 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~------------------~~~~~--------------  199 (423)
                      .+++++|.||++||++|+...|.+.++++.+. .+.|..|+++                  ++...              
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            46899999999999999999999999999988 7889999987                  22110              


Q ss_pred             -----hHHHhhCCCCccccccCccEEEEe-CCCCCCCCCcccccCCC-CHHHHHHHHHHh
Q 014549          200 -----THLAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGEL-SVDAVTDWFATA  252 (423)
Q Consensus       200 -----~~l~~~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~-~~~~l~~fi~~~  252 (423)
                           ..+++.|+      |.++|+++++ ++|..      .+.|.. +.+.|.+++.+.
T Consensus       115 ~~~d~~~~~~~~~------v~~~P~~~lid~~G~i------~~~g~~~~~~~l~~~l~~l  162 (165)
T 3ha9_A          115 MVMDDGSLVEKFN------VRSIDYIVIMDKSSNV------LYAGTTPSLGELESVIKSV  162 (165)
T ss_dssp             EEECCSHHHHHTT------CCSSSEEEEEETTCCE------EEEEESCCHHHHHHHHHHC
T ss_pred             EEeChHHHHHHhC------CCCceEEEEEcCCCcE------EEeCCCCCHHHHHHHHHHH
Confidence                 25778888      9999999999 55544      337888 899999988764

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.92  E-value=2.5e-09  Score=92.17  Aligned_cols=91  Identities=10%  Similarity=0.020  Sum_probs=72.1

Q ss_pred             CCCcEEEEEecCCCccccc-cHHHHHHHHHHhhcc-ceEEEEEcc-------cch------------------hhhH---
Q 014549          152 DSKPWLIQVYSDGSYLCGQ-FSGAWKTIAALLEGI-ANTGMVELG-------DIR------------------LATH---  201 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~-~~p~~~~~A~~l~~~-~~~~~Vdc~-------~~~------------------~~~~---  201 (423)
                      .+++++|.||++||++|+. +.|.++++++++.+. +.|..|+++       ...                  ....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            4789999999999999999 699999999999875 788888862       000                  1112   


Q ss_pred             ---HHhhCCCCccccccCccEEEEeC-CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          202 ---LAERKPIGQIFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       202 ---l~~~~~~~~~~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         +++.|+      |.++|+++++. +|..    ...+.|..+.+.|.+++.+.
T Consensus       109 ~~~~~~~~~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  153 (160)
T 3lor_A          109 IPSTMKKYR------LEGTPSIILADRKGRI----RQVQFGQVDDFVLGLLLGSL  153 (160)
T ss_dssp             SCHHHHHTT------CCSSSEEEEECTTSBE----EEEEESCCCHHHHHHHHHHH
T ss_pred             hhhHHHhcc------cCccceEEEECCCCcE----EEEecCcCCHHHHHHHHHHH
Confidence               777787      89999999995 4543    44667999999999999876

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.91  E-value=9.9e-10  Score=96.66  Aligned_cols=82  Identities=11%  Similarity=0.005  Sum_probs=61.6

Q ss_pred             EeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCcc
Q 014549          140 VVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       140 ~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P  218 (423)
                      .++++.+..+- -.+++++|.|||+||++|+.+.|.++++++... .+.|..||.+   ...+++++|.   ..++.++|
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d---~~~~~~~~~~---~~~v~~iP  112 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKG---RAEDDLRQRL---ALERIAIP  112 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHH---HHHHHTTTTT---TCSSCCSS
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECC---CCHHHHHHHH---HcCCCCcC
Confidence            34444444332 246789999999999999999999999998764 5889999988   4455777663   11288999


Q ss_pred             EEEEeCCCCC
Q 014549          219 SLVAFPPGCK  228 (423)
Q Consensus       219 ti~~f~~g~~  228 (423)
                      |+++|.+|..
T Consensus       113 t~i~~~~~G~  122 (167)
T 1z6n_A          113 LVLVLDEEFN  122 (167)
T ss_dssp             EEEEECTTCC
T ss_pred             eEEEECCCCC
Confidence            9999998644

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.91  E-value=3.6e-09  Score=90.67  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh----------------------hhHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~----------------------~~~l~~~~~~  208 (423)
                      .+++++|.||++||++|+...|.+.++++.+.+. +.|..|+++++..                      ...+++.|+ 
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC-  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC-
Confidence            4689999999999999999999999999999876 7999999985321                      466889999 


Q ss_pred             CccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          209 GQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                           |.++|+++++ ++|..    ...+   .+.+.+.+++.+.
T Consensus       107 -----v~~~P~~~lid~~G~i----~~~~---~~~~~l~~~l~~l  139 (152)
T 2lrn_A          107 -----IVGFPHIILVDPEGKI----VAKE---LRGDDLYNTVEKF  139 (152)
T ss_dssp             -----CCSSCEEEEECTTSEE----EEEC---CCTTHHHHHHHHH
T ss_pred             -----CCcCCeEEEECCCCeE----EEee---CCHHHHHHHHHHH
Confidence                 8999999999 55543    1222   2456677777665

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.90  E-value=5.2e-09  Score=92.66  Aligned_cols=97  Identities=11%  Similarity=0.114  Sum_probs=72.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-c------eEEEEEccc--chhhhHHHhhCCCC------------c
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-A------NTGMVELGD--IRLATHLAERKPIG------------Q  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~------~~~~Vdc~~--~~~~~~l~~~~~~~------------~  210 (423)
                      .++++||.||++||++|+...|.+.++++++.+. +      .|..|+++.  .......++++++.            .
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            4689999999999999999999999999999876 7      999999985  22233444544431            0


Q ss_pred             ---cccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 ---IFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ---~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         .+.|.++|+++++ ++|..    ...|.|..+.+.|.+++.+.
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  179 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRP----AAVFLREVTSKDVLDVALPL  179 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCE----EEEECSCCCHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcE----EEEEcCCCCHHHHHHHHHHH
Confidence               1237899976666 55554    34677999999999999876

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.89  E-value=3.1e-09  Score=90.11  Aligned_cols=71  Identities=10%  Similarity=0.030  Sum_probs=59.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccch---------------------hhhHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIR---------------------LATHLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~---------------------~~~~l~~~~~~  208 (423)
                      .+++++|.||++||++|+.+.|.++++++++.+  .+.|..|+++++.                     ....++++|+ 
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  105 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD-  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcC-
Confidence            467999999999999999999999999999984  5789999988532                     1356889998 


Q ss_pred             CccccccCccEEEEeC--CCCC
Q 014549          209 GQIFFRRGLPSLVAFP--PGCK  228 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~--~g~~  228 (423)
                           |.++||++++.  +|..
T Consensus       106 -----v~~~P~~~lid~~~G~i  122 (144)
T 1i5g_A          106 -----VKSIPTLVGVEADSGNI  122 (144)
T ss_dssp             -----CCSSSEEEEEETTTCCE
T ss_pred             -----CCCCCEEEEEECCCCcE
Confidence                 99999999995  5643

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.89  E-value=8e-10  Score=86.37  Aligned_cols=73  Identities=23%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      ++.||+|||+.|+.++|.+++++..+     +.+||.+++   ++++++|+      ++ +||+++ .+|+.      ..
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~---~~l~~~~g------~~-vPtl~~-~~G~~------v~   60 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDD---AALESAYG------LR-VPVLRD-PMGRE------LD   60 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTC---HHHHHHHT------TT-CSEEEC-TTCCE------EE
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCC---HHHHHHhC------CC-cCeEEE-ECCEE------Ee
Confidence            68899999999999999998776432     688999954   45999998      88 999988 77754      22


Q ss_pred             cCCCCHHHHHHHHHHh
Q 014549          237 EGELSVDAVTDWFATA  252 (423)
Q Consensus       237 ~G~~~~~~l~~fi~~~  252 (423)
                       |..+.+.|.+|+.+.
T Consensus        61 -g~~~~~~L~~~l~~~   75 (87)
T 1ttz_A           61 -WPFDAPRLRAWLDAA   75 (87)
T ss_dssp             -SCCCHHHHHHHHHTC
T ss_pred             -CCCCHHHHHHHHHHH
Confidence             888999999999765

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.88  E-value=4.9e-09  Score=90.21  Aligned_cols=92  Identities=15%  Similarity=0.017  Sum_probs=72.0

Q ss_pred             CCCcEEEEEecCCCcccccc-HHHHHHHHHHhhcc-ceEEEEEccc------c-h------------------hhh----
Q 014549          152 DSKPWLIQVYSDGSYLCGQF-SGAWKTIAALLEGI-ANTGMVELGD------I-R------------------LAT----  200 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~-~p~~~~~A~~l~~~-~~~~~Vdc~~------~-~------------------~~~----  200 (423)
                      .+++++|.||++||++|+.. .|.+.++++++.+. +.|..|+++.      . .                  ...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            46899999999999999996 99999999999854 7888888631      0 0                  001    


Q ss_pred             -HHHhhCCCCccccccCccEEEEeC-CCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          201 -HLAERKPIGQIFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       201 -~l~~~~~~~~~~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                       .+++.|+      |.++|+++++- +|..    ...+.|..+.+.|.+++.+.+
T Consensus       107 ~~~~~~~~------v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~ll  151 (158)
T 3eyt_A          107 PRTMAAYQ------MRGTPSLLLIDKAGDL----RAHHFGDVSELLLGAEIATLL  151 (158)
T ss_dssp             CHHHHHTT------CCSSSEEEEECTTSEE----EEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcC------CCCCCEEEEECCCCCE----EEEEeCCCCHHHHHHHHHHHh
Confidence             4778888      99999999984 5543    346679999999999998763

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.86  E-value=5.3e-09  Score=90.31  Aligned_cols=91  Identities=12%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccc----------------hhhhHHHhhCCCCccccc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI----------------RLATHLAERKPIGQIFFR  214 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~----------------~~~~~l~~~~~~~~~~~i  214 (423)
                      .+++++|.||++||++|+...|.++++++.+.+ .+.|..|+++..                .....+++.|+      |
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------v  113 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYG------A  113 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTT------C
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhC------C
Confidence            468999999999999999999999999999974 478999998841                11356889999      9


Q ss_pred             cCccEEEEe-CCCCCCCCCcccccCC--CCHHHHHHHHHHh
Q 014549          215 RGLPSLVAF-PPGCKSSDCMTRFEGE--LSVDAVTDWFATA  252 (423)
Q Consensus       215 ~~~Pti~~f-~~g~~~~~~~~~y~G~--~~~~~l~~fi~~~  252 (423)
                      .++|+++++ ++|..    ...+.|.  .+..++++.+.+.
T Consensus       114 ~~~P~~~lid~~G~i----~~~~~G~~~~~~~~~~~~~~~~  150 (158)
T 3hdc_A          114 NRLPDTFIVDRKGII----RQRVTGGIEWDAPKVVSYLKSL  150 (158)
T ss_dssp             CSSSEEEEECTTSBE----EEEEESCCCTTSHHHHHHHHTT
T ss_pred             CCcceEEEEcCCCCE----EEEEeCCCccchHHHHHHHHhh
Confidence            999998777 45543    3456674  4567777777654

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.85  E-value=4.5e-09  Score=89.44  Aligned_cols=71  Identities=8%  Similarity=0.031  Sum_probs=59.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccch---------------------hhhHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIR---------------------LATHLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~---------------------~~~~l~~~~~~  208 (423)
                      .+++++|.||++||++|+.+.|.++++++++.  +.+.|..|+++++.                     ....++++|+ 
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  105 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN-  105 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC-
Confidence            46799999999999999999999999999998  35789999988532                     1356889998 


Q ss_pred             CccccccCccEEEEeC--CCCC
Q 014549          209 GQIFFRRGLPSLVAFP--PGCK  228 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~--~g~~  228 (423)
                           |.++||++++.  +|..
T Consensus       106 -----v~~~Pt~~lid~~~G~i  122 (146)
T 1o8x_A          106 -----VESIPTLIGVDADSGDV  122 (146)
T ss_dssp             -----CCSSSEEEEEETTTCCE
T ss_pred             -----CCCCCEEEEEECCCCeE
Confidence                 99999999996  5543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.84  E-value=1.6e-08  Score=93.17  Aligned_cols=138  Identities=19%  Similarity=0.248  Sum_probs=99.8

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~  341 (423)
                      +++.+.++.|+...  ..++|.||.+.++...+.+..+|..+ ..+.|+.+.     ..+++++|+++. |+|++|+..+
T Consensus        14 l~s~~~~~~~l~~~--~v~vVgff~~~~~~~~~~f~~~A~~l-~~~~F~~t~-----~~~v~~~~~v~~-p~i~lfk~~~   84 (227)
T 4f9z_D           14 LTDVPAAMEFIAAT--EVAVIGFFQDLEIPAVPILHSMVQKF-PGVSFGIST-----DSEVLTHYNITG-NTICLFRLVD   84 (227)
T ss_dssp             CCSHHHHHHHHHTS--SEEEEEECSCSCSTHHHHHHHHTTTC-TTSEEEEEC-----CHHHHHHTTCCS-SEEEEEETTT
T ss_pred             eCCHHHHHHHHhcC--CeEEEEEecCCCchhHHHHHHHHHhC-CCceEEEEC-----CHHHHHHcCCCC-CeEEEEEecC
Confidence            55544467787643  23556677765556678888888888 478888753     356999999986 9999999877


Q ss_pred             cceeEecC----CCChhHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEE-ccCChhhHHHHHHH
Q 014549          342 VKPVVYYG----SFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILA-GRLSPELNKMREVS  416 (423)
Q Consensus       342 ~~~~~y~g----~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~-~~~~~~~~~~~~~~  416 (423)
                      ..+..|.|    +++.+.|.+||..+.+|++++++..+...+. ..      +.    +++++++ .+...+.+++++.|
T Consensus        85 ~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~-~~------~~----~~~~l~f~~~~~~~~~~~~~~~  153 (227)
T 4f9z_D           85 NEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLF-NS------VI----QIHLLLIMNKASPEYEENMHRY  153 (227)
T ss_dssp             TEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHH-HS------SC----CEEEEEEECTTSTTHHHHHHHH
T ss_pred             cccccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHh-cc------CC----ceEEEEEEcCCcchHHHHHHHH
Confidence            77888884    7899999999999999999999998876653 11      11    3665555 33444556666666


Q ss_pred             hhh
Q 014549          417 ISA  419 (423)
Q Consensus       417 ~~~  419 (423)
                      +++
T Consensus       154 ~~v  156 (227)
T 4f9z_D          154 QKA  156 (227)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.83  E-value=6e-09  Score=88.19  Aligned_cols=86  Identities=12%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             CCcEEEEEecCCCccccccHHHHHH---HHHHhhcc-ceEEEEEcccchhh-h--------------------HHHhhCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGI-ANTGMVELGDIRLA-T--------------------HLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~---~A~~l~~~-~~~~~Vdc~~~~~~-~--------------------~l~~~~~  207 (423)
                      +++++|.||++||++|+...|.+.+   +.+.+++. +.|..|+.+++... .                    .+++.|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            5899999999999999999999999   99988654 78888988754221 1                    1345555


Q ss_pred             CCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549          208 IGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       208 ~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~  250 (423)
                            |.++|+++++.+++..     .+.+ .+.++|.+|+.
T Consensus       111 ------v~~~P~~~lid~~G~i-----~~~~-~~~~~l~~~l~  141 (142)
T 3eur_A          111 ------LRAIPTLYLLDKNKTV-----LLKD-ATLQKVEQYLA  141 (142)
T ss_dssp             ------CTTCSEEEEECTTCBE-----EEEE-ECHHHHHHHHH
T ss_pred             ------CCcCCeEEEECCCCcE-----EecC-CCHHHHHHHHh
Confidence                  9999999999654442     4443 25788888875

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.82  E-value=7.2e-09  Score=88.61  Aligned_cols=91  Identities=10%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccc-hh-------------------hhHHHhhCCCCc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI-RL-------------------ATHLAERKPIGQ  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~-~~-------------------~~~l~~~~~~~~  210 (423)
                      .+++++|.||++||++|+...|.+.++++.+.+ .+.|..|+++.+ ..                   ...+++.|+   
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  103 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG---  103 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT---
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC---
Confidence            568999999999999999999999999999987 478999998853 11                   133777788   


Q ss_pred             cccccCccEEEEe-CCCCCCCCCcccccCCC--CHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAF-PPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~--~~~~l~~fi~~~  252 (423)
                         |.++|+++++ ++|..    ...+.|..  +.+.+.+++.+.
T Consensus       104 ---v~~~P~~~lid~~G~i----~~~~~g~~~~~~~~l~~~l~~l  141 (154)
T 3kcm_A          104 ---TTGVPETFVIDRHGVI----LKKVVGAMEWDHPEVIAFLNNE  141 (154)
T ss_dssp             ---CCSBCEEEEECTTSBE----EEEEESCCCTTSHHHHHHHHTC
T ss_pred             ---CCCCCeEEEECCCCcE----EEEEcCCCccccHHHHHHHHHH
Confidence               8999977666 55544    34566764  677899998765

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.81  E-value=5.6e-09  Score=88.35  Aligned_cols=71  Identities=10%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccch---------------------hhhHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIR---------------------LATHLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~---------------------~~~~l~~~~~~  208 (423)
                      .+++++|.||++||++|+.+.|.++++++++.  +.+.+..|+++.+.                     ....+++.|+ 
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  105 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG-  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT-
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC-
Confidence            46799999999999999999999999999997  45788889988532                     1356888888 


Q ss_pred             CccccccCccEEEEeC--CCCC
Q 014549          209 GQIFFRRGLPSLVAFP--PGCK  228 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~--~g~~  228 (423)
                           |.++||++++.  +|..
T Consensus       106 -----v~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A          106 -----VESIPTLITINADTGAI  122 (144)
T ss_dssp             -----CCSSSEEEEEETTTCCE
T ss_pred             -----CCCCCEEEEEECCCCeE
Confidence                 99999999997  4543

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.81  E-value=7.9e-09  Score=87.21  Aligned_cols=95  Identities=16%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHH---HHHHhhcc-ceEEEEEcccchh-hhHHHhhCCCC--------------ccc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGI-ANTGMVELGDIRL-ATHLAERKPIG--------------QIF  212 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~---~A~~l~~~-~~~~~Vdc~~~~~-~~~l~~~~~~~--------------~~~  212 (423)
                      .+++++|.||++||++|+...|.+.+   +.+.+++. +.|..|+++++.. .....+++++.              ..|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            46899999999999999999999998   88888764 7889998884332 12222222210              133


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|.++|+++++.+++..     .+ +..+.++|.+++.+.
T Consensus       106 ~v~~~P~~~lid~~G~i-----~~-~~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKRV-----IL-KDTSMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECTTCBE-----EE-CSCCHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCCE-----Ee-cCCCHHHHHHHHHHH
Confidence            49999999999544331     33 567899999998754

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.77  E-value=1.3e-08  Score=87.52  Aligned_cols=89  Identities=12%  Similarity=0.001  Sum_probs=69.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh--------------------hHHHhhCCCCc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA--------------------THLAERKPIGQ  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~--------------------~~l~~~~~~~~  210 (423)
                      .+++++|.||++||++|+...|.+.++++++.+. +.|..|+++.....                    ..+++.|+   
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---  110 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN---  110 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT---
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC---
Confidence            3579999999999999999999999999999876 79999999854321                    02677777   


Q ss_pred             cccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549          211 IFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       211 ~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~  250 (423)
                         |.++|+++++ ++|..    ...+.|..+.++...-..
T Consensus       111 ---v~~~P~~~lid~~G~i----~~~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A          111 ---VTNLPSVFLVNRNNEL----SARGENIKDLDEAIKKLL  144 (152)
T ss_dssp             ---CCSCSEEEEEETTTEE----EEETTTCSCHHHHHHHHH
T ss_pred             ---cccCceEEEECCCCeE----EEecCCHHHHHHHHHHHH
Confidence               8899999999 55654    346678888777655443

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.74  E-value=1.5e-08  Score=88.59  Aligned_cols=68  Identities=9%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchh---------------------hhHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRL---------------------ATHLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~---------------------~~~l~~~~~~  208 (423)
                      .++++||.||++||++|+.+.|.++++++.+.+  .+.|..|+++++..                     ...+++.|+ 
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  125 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYS-  125 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcC-
Confidence            468999999999999999999999999999985  57888888875421                     156889998 


Q ss_pred             CccccccCccEEEEeCC
Q 014549          209 GQIFFRRGLPSLVAFPP  225 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~~  225 (423)
                           |.++||++++.+
T Consensus       126 -----v~~~Pt~~lid~  137 (165)
T 3s9f_A          126 -----VESIPTLIGLNA  137 (165)
T ss_dssp             -----CCSSSEEEEEET
T ss_pred             -----CCCCCEEEEEeC
Confidence                 999999999975

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.72  E-value=2.3e-08  Score=86.47  Aligned_cols=98  Identities=10%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             CCccccc----CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          144 EDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       144 ~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .+|++.+    ..++++||.||++||..|+.|...-   .++++.+.....+.++|.+.. ....++++|+      +.+
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~-~~~~l~~~y~------v~~  101 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSE-EGQRYIQFYK------LGD  101 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSH-HHHHHHHHHT------CCS
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCH-hHHHHHHHcC------CCC
Confidence            4666655    4589999999999999999997644   567777766777788888643 4566889999      899


Q ss_pred             ccEEEEeCCC-CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g-~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|+++++.+. ...   ...+.| .+++++++++.+.
T Consensus       102 ~P~~~fld~~~G~~---l~~~~g-~~~~~fl~~L~~~  134 (153)
T 2dlx_A          102 FPYVSILDPRTGQK---LVEWHQ-LDVSSFLDQVTGF  134 (153)
T ss_dssp             SSEEEEECTTTCCC---CEEESS-CCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCcE---eeecCC-CCHHHHHHHHHHH
Confidence            9999999764 321   334556 8999999988776

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.71  E-value=2.5e-08  Score=98.02  Aligned_cols=92  Identities=11%  Similarity=-0.047  Sum_probs=74.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch------------------------hhhHHHhhC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR------------------------LATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~------------------------~~~~l~~~~  206 (423)
                      .++++||.||++||++|+.+.|.++++++++.+. +.|..|+|++..                        ....+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            3689999999999999999999999999999874 789999885210                        124578888


Q ss_pred             CCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       207 ~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                      +      |.++|+++++ ++|..    ...+.|..+.+.|.+++.+.+
T Consensus       161 g------V~~~Pt~~lID~~G~I----v~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          161 R------NRYWPAEYLIDATGTV----RHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             T------CCEESEEEEECTTSBE----EEEEESBCCHHHHHHHHHHHH
T ss_pred             C------CCccCEEEEEeCCCeE----EEEEcCCCCHHHHHHHHHHHH
Confidence            8      8999999888 55544    446779899999999998763

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=5.8e-08  Score=82.84  Aligned_cols=88  Identities=11%  Similarity=0.065  Sum_probs=69.3

Q ss_pred             CCCcEEEEEecCCCcc--ccccHHHHHHHHHHh-hcc-ceEEEEEcccchh----------------------hhHHHhh
Q 014549          152 DSKPWLIQVYSDGSYL--CGQFSGAWKTIAALL-EGI-ANTGMVELGDIRL----------------------ATHLAER  205 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~--C~~~~p~~~~~A~~l-~~~-~~~~~Vdc~~~~~----------------------~~~l~~~  205 (423)
                      .+++++|.||++||++  |+...|.+.++.+++ ++. +.|..|+++.++.                      ...+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            4689999999999999  999999999999999 665 7899999885431                      2367888


Q ss_pred             CCCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          206 KPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       206 ~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |+      |.++|+++++ ++|..      .+.. .+.+.+.+.+.+.
T Consensus       112 ~~------v~~~P~~~lid~~G~i------~~~~-~~~~~l~~~l~~l  146 (150)
T 3fw2_A          112 YS------IYKIPANILLSSDGKI------LAKN-LRGEELKKKIENI  146 (150)
T ss_dssp             TT------CCSSSEEEEECTTSBE------EEES-CCHHHHHHHHHHH
T ss_pred             cC------CCccCeEEEECCCCEE------EEcc-CCHHHHHHHHHHH
Confidence            88      8999999999 55543      3333 2677788777665

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.71  E-value=3.7e-08  Score=87.25  Aligned_cols=97  Identities=15%  Similarity=0.274  Sum_probs=72.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccc--hhhhHHHhhCCCC-------------ccccc-
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI--RLATHLAERKPIG-------------QIFFR-  214 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~--~~~~~l~~~~~~~-------------~~~~i-  214 (423)
                      .+++++|.||++||++|+...|.++++.+.+.+ .+.|..|+++.+  ......++++++.             ..+.+ 
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            467999999999999999999999999999974 478999998844  2345677777731             11112 


Q ss_pred             ---cCccEEEEe-CCCCCCCCCcccccCCCC--HHHHHHHHHHh
Q 014549          215 ---RGLPSLVAF-PPGCKSSDCMTRFEGELS--VDAVTDWFATA  252 (423)
Q Consensus       215 ---~~~Pti~~f-~~g~~~~~~~~~y~G~~~--~~~l~~fi~~~  252 (423)
                         .++|+++++ ++|..    ...|.|..+  .+++.+++.+.
T Consensus       139 ~~~~~~P~~~lid~~G~i----~~~~~g~~~~~~~~l~~~l~~l  178 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCE----IATIAGPAEWASEDALKLIRAA  178 (186)
T ss_dssp             TCCSSSSEEEEECTTSBE----EEEEESCCCTTSHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCE----EEEEecCCccCHHHHHHHHHHH
Confidence               389999999 55544    345677654  78899988776

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.70  E-value=2.8e-08  Score=88.77  Aligned_cols=92  Identities=8%  Similarity=-0.014  Sum_probs=71.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccc--------------------------hhhhHHHh
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI--------------------------RLATHLAE  204 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~--------------------------~~~~~l~~  204 (423)
                      ...+++|.||++||++|+...|.++++++++.+. +.|..|+++..                          .....+++
T Consensus        45 gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (196)
T 2ywi_A           45 SDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAK  124 (196)
T ss_dssp             CSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence            3345999999999999999999999999999875 89999998521                          02345777


Q ss_pred             hCCCCccccccCccEEEEe-CCCCCCCCCccc---------ccCCCCHHHHHHHHHHhh
Q 014549          205 RKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTR---------FEGELSVDAVTDWFATAI  253 (423)
Q Consensus       205 ~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~---------y~G~~~~~~l~~fi~~~~  253 (423)
                      .|+      |.++|+++++ ++|..    ...         +.|..+.+.|.+.+.+.+
T Consensus       125 ~~~------v~~~P~~~lid~~G~i----~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          125 AYD------AACTPDFYIFDRDLKC----VYRGQLDDSRPNNGIPVTGESIRAALDALL  173 (196)
T ss_dssp             HHT------CCEESEEEEEETTCBE----EEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred             HhC------CCCCCeEEEEcCCCeE----EEccccCcccccccCccCHHHHHHHHHHHH
Confidence            787      8899999999 55543    122         457778899999988763

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.69  E-value=3e-08  Score=87.49  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=67.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--------------------hhhHHHhhCCCCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIGQI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--------------------~~~~l~~~~~~~~~  211 (423)
                      .+++++|.||++||++|+...|.+++++++   .+.|..|+++++.                    ....+++.|+    
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  129 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLG----  129 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHT----
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcC----
Confidence            368999999999999999999999999876   3677777753211                    2244667777    


Q ss_pred             ccccCccEEEEeC-CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |.++|+++++- +|..    ...+.|..+.+.+.+++.+.
T Consensus       130 --v~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~~  165 (176)
T 3kh7_A          130 --VYGAPETYLIDKQGII----RHKIVGVVDQKVWREQLAPL  165 (176)
T ss_dssp             --CCSSCEEEEECTTCBE----EEEEESCCCHHHHHHHTHHH
T ss_pred             --CCCCCeEEEECCCCeE----EEEEcCCCCHHHHHHHHHHH
Confidence              88999877774 4543    34667999999999888776

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.69  E-value=2.9e-08  Score=88.16  Aligned_cols=90  Identities=9%  Similarity=0.065  Sum_probs=69.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--------------------------hhhhHHHhh
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------------------------RLATHLAER  205 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--------------------------~~~~~l~~~  205 (423)
                      .+++++|.||++||++|+...|.++++++++.+.+.|..|+++..                          .....+++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            358999999999999999999999999999987688889988421                          023457788


Q ss_pred             CCCCccccccCccEEEEeC-CCCCCCCCccccc----------CCCCHHHHHHHHHHhh
Q 014549          206 KPIGQIFFRRGLPSLVAFP-PGCKSSDCMTRFE----------GELSVDAVTDWFATAI  253 (423)
Q Consensus       206 ~~~~~~~~i~~~Pti~~f~-~g~~~~~~~~~y~----------G~~~~~~l~~fi~~~~  253 (423)
                      |+      |.++|+++++. +|..      .+.          |..+.+.|.+.+.+.+
T Consensus       112 ~~------v~~~P~~~lid~~G~i------~~~g~~~~~~~~~g~~~~~~l~~~i~~ll  158 (188)
T 2cvb_A          112 YR------ALRTPEVFLFDERRLL------RYHGRVNDNPKDPSKVQSHDLEAAIEALL  158 (188)
T ss_dssp             TT------CCEESEEEEECTTCBE------EEEECSSSCTTCGGGCCCCHHHHHHHHHH
T ss_pred             cC------CCCCCeEEEECCCCcE------EEEEecCCccccccccCHHHHHHHHHHHH
Confidence            88      88999999994 4543      333          3346788988887763

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.64  E-value=2.4e-08  Score=103.44  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=76.7

Q ss_pred             eEeccCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          139 NVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       139 ~~L~~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      ..++++.++.+.+ +....++.||++||++|+.+.|.++++|.... .+.+.+||.+   ..++++++++      |.++
T Consensus       102 ~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~---~~~~~~~~~~------i~sv  171 (521)
T 1hyu_A          102 SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGG---TFQNEITERN------VMGV  171 (521)
T ss_dssp             CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETT---TCHHHHHHTT------CCSS
T ss_pred             CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEech---hhHHHHHHhC------CCcc
Confidence            3466666655542 35567899999999999999999999998875 7899999999   5566999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      ||+++  +|+.      ...|..+.+.|.+|+.+
T Consensus       172 Pt~~i--~g~~------~~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          172 PAVFV--NGKE------FGQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             SEEEE--TTEE------EEESCCCHHHHHHHHCC
T ss_pred             CEEEE--CCEE------EecCCCCHHHHHHHHhh
Confidence            99977  6644      35599999999999754

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.63  E-value=2.7e-09  Score=87.28  Aligned_cols=89  Identities=12%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             cccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--hhhHHHhhCCCCccccccCccEEEEe
Q 014549          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       146 f~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      ++++++. +.+++ ||++||++|+.+.|.+++++..    ..+..||.+.+.  ....++++++      +.++||+  |
T Consensus        13 ~~~~~~~-~~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~------v~~~Pt~--~   78 (116)
T 2e7p_A           13 AKELASS-APVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTG------RGTVPNV--F   78 (116)
T ss_dssp             HHHHHTS-SSEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHS------CCSSCEE--E
T ss_pred             HHHHHcC-CCEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhC------CCCcCEE--E
Confidence            3444544 45555 9999999999999999887533    344444444210  0145888998      9999999  5


Q ss_pred             CCCCCCCCCcccccCCC---CHHHHHHHHHHh
Q 014549          224 PPGCKSSDCMTRFEGEL---SVDAVTDWFATA  252 (423)
Q Consensus       224 ~~g~~~~~~~~~y~G~~---~~~~l~~fi~~~  252 (423)
                      .+|..    ...+.|..   +.+.|.+++.+.
T Consensus        79 ~~g~~----v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           79 IGGKQ----IGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             ETTEE----EECHHHHHHHHHTTCHHHHHHHT
T ss_pred             ECCEE----ECChHHHHHHHhCChHHHHHHHc
Confidence            56644    23444433   455677777654

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.58  E-value=2.1e-07  Score=80.26  Aligned_cols=91  Identities=12%  Similarity=0.015  Sum_probs=70.3

Q ss_pred             CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhhc-----cceEEEEEcccch-------------------------hhh
Q 014549          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG-----IANTGMVELGDIR-------------------------LAT  200 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~~-----~~~~~~Vdc~~~~-------------------------~~~  200 (423)
                      .+++++|.||++||++ |+...|.+.++.++++.     .+.+..|+++.++                         ...
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3679999999999998 99999999999999875     5788888887421                         112


Q ss_pred             HHHhhCCCCccccccCcc---------------EEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          201 HLAERKPIGQIFFRRGLP---------------SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       201 ~l~~~~~~~~~~~i~~~P---------------ti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .+++.|+      |...|               +++++ ++|..    ...|.|..+.++|.+.+.+.
T Consensus       102 ~~~~~~~------v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  159 (164)
T 2ggt_A          102 QVARAYR------VYYSPGPKDEDEDYIVDHTIIMYLIGPDGEF----LDYFGQNKRKGEIAASIATH  159 (164)
T ss_dssp             HHHHTTT------CCEEEEEECTTSCEEEEECCEEEEECTTSCE----EEEEETTCCHHHHHHHHHHH
T ss_pred             HHHHhcC------eEEEecCCCCCCCeeEeccceEEEECCCCeE----EEEeCCCCCHHHHHHHHHHH
Confidence            4677777      88888               55555 55654    44667888999999988776

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.57  E-value=8e-08  Score=81.26  Aligned_cols=87  Identities=5%  Similarity=-0.100  Sum_probs=64.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-----------------------hhHHHhhCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-----------------------ATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-----------------------~~~l~~~~~  207 (423)
                      .+++++|.||++||++|+...|.+.++.+++.+. +.|..|+++.+..                       ...+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            4689999999999999999999999999998754 7888888874321                       134667777


Q ss_pred             CCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549          208 IGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       208 ~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~  250 (423)
                            |.++|+.+++.++...     .+.+ .+.+++.+++.
T Consensus       111 ------v~~~P~~~lid~~G~i-----~~~~-~~~~~l~~~l~  141 (143)
T 4fo5_A          111 ------LRKGFKNFLINDEGVI-----IAAN-VTPEKLTEILK  141 (143)
T ss_dssp             ------GGGCCCEEEECTTSBE-----EEES-CCHHHHHHHHT
T ss_pred             ------CCCCCcEEEECCCCEE-----EEcc-CCHHHHHHHHH
Confidence                  9999998888644331     3332 34566666653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.56  E-value=3.6e-08  Score=98.07  Aligned_cols=63  Identities=25%  Similarity=0.510  Sum_probs=53.3

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      ..++|++||+.+.++.++|+++|+++++++|||+.++      +.++|..|.+||++|+||++|..||+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            3489999999999999999999999999999998864      45679999999999999999999997

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.97  E-value=8e-09  Score=87.09  Aligned_cols=70  Identities=16%  Similarity=0.098  Sum_probs=55.2

Q ss_pred             CC-cEEEEEecCCCccccccHHHHHHHHHHhh---ccceEEEEEcccchh----------------------hhHHHhhC
Q 014549          153 SK-PWLIQVYSDGSYLCGQFSGAWKTIAALLE---GIANTGMVELGDIRL----------------------ATHLAERK  206 (423)
Q Consensus       153 ~~-~~lV~FYapwC~~C~~~~p~~~~~A~~l~---~~~~~~~Vdc~~~~~----------------------~~~l~~~~  206 (423)
                      ++ +++|.||++||++|+.+.|.++++++.++   ..+.+..|+++++..                      ...+++.|
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            44 99999999999999999999999999883   346788888774321                      13577777


Q ss_pred             CCCccccccCccEEEEeC-CCCC
Q 014549          207 PIGQIFFRRGLPSLVAFP-PGCK  228 (423)
Q Consensus       207 ~~~~~~~i~~~Pti~~f~-~g~~  228 (423)
                      +      |.++|+++++. +|..
T Consensus       105 ~------v~~~P~~~lid~~G~i  121 (143)
T 2lus_A          105 G------ITGIPALVIVKKDGTL  121 (143)
Confidence            7      99999999997 4543

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.54  E-value=1.4e-08  Score=77.47  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=46.0

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      ++.||+|||++|+.+.|.+++++++....+.+..||.+  ....++++++|      ++++||+++  +|+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~g------v~~vPt~~i--~g~   64 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTD--KARIAEAEKAG------VKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTC--SSTHHHHHHHT------CCEEEEEEE--TTE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCC--hhhHHHHHHcC------CCcCCEEEE--CCE
Confidence            67899999999999999999987765444455555442  12345788888      999999987  554

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.54  E-value=3e-07  Score=81.97  Aligned_cols=97  Identities=9%  Similarity=-0.070  Sum_probs=70.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHH-hhCCCCc-----------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLA-ERKPIGQ-----------  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~-~~~~~~~-----------  210 (423)
                      .+++++|.||++||+.|+...|.+.++.+++.+. +.|..|++++        .......+ +++++..           
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4689999999999999999999999999999876 8999999872        12223344 3432210           


Q ss_pred             ------------cccccCcc------EEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 ------------IFFRRGLP------SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ------------~~~i~~~P------ti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                                  .+++.++|      +.+++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  183 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVP----VERFSPGASVKDIEKKLIPL  183 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCE----EEEECTTCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcE----EEEECCCCCHHHHHHHHHHH
Confidence                        12478889      55444 66655    34677888999999988776

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.53  E-value=5.4e-08  Score=84.68  Aligned_cols=97  Identities=13%  Similarity=-0.011  Sum_probs=72.4

Q ss_pred             CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhhc----cceEEEEEcccchh----h---------------------hH
Q 014549          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG----IANTGMVELGDIRL----A---------------------TH  201 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~~----~~~~~~Vdc~~~~~----~---------------------~~  201 (423)
                      .+++++|.||++||++ |+...|.+.++.+++.+    .+.|..|+++.++.    .                     ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4679999999999998 99999999999998874    57899999873210    0                     34


Q ss_pred             HHhhCCCC---------ccccccCccEEEEeCCCCCCCCCcccccCCC--CHHHHHHHHHHh
Q 014549          202 LAERKPIG---------QIFFRRGLPSLVAFPPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (423)
Q Consensus       202 l~~~~~~~---------~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~--~~~~l~~fi~~~  252 (423)
                      +++.|++.         ..+.|.+.|+++++.+|..    ...|.|..  +.+.|.+.+.+.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i----~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRL----VLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEE----EEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEE----EEEECCCCCCCHHHHHHHHHHh
Confidence            66666631         2244678999999984433    34566777  889999888653

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.53  E-value=1.7e-07  Score=85.72  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccc--------------------------hhhhHHHhh
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI--------------------------RLATHLAER  205 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~--------------------------~~~~~l~~~  205 (423)
                      ..+++|.||++||+.|+...|.++++++++.+. +.|..|+++..                          .....+++.
T Consensus        59 k~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  138 (218)
T 3u5r_E           59 SPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKA  138 (218)
T ss_dssp             CSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHH
Confidence            335999999999999999999999999999876 78999998411                          023457888


Q ss_pred             CCCCccccccCccEEEEeC-CCCCCCCCcccccC-----------CCCHHHHHHHHHHh
Q 014549          206 KPIGQIFFRRGLPSLVAFP-PGCKSSDCMTRFEG-----------ELSVDAVTDWFATA  252 (423)
Q Consensus       206 ~~~~~~~~i~~~Pti~~f~-~g~~~~~~~~~y~G-----------~~~~~~l~~fi~~~  252 (423)
                      |+      |.++|+++++- +|..      .|.|           ..+.+.|.+.+.+.
T Consensus       139 ~~------v~~~P~~~liD~~G~i------~~~g~~d~~~~~~~~~~~~~~l~~~i~~l  185 (218)
T 3u5r_E          139 YG------AACTPDFFLYDRERRL------VYHGQFDDARPGNGKDVTGADLRAAVDAV  185 (218)
T ss_dssp             HT------CCEESEEEEECTTCBE------EEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred             cC------CCCCCeEEEECCCCcE------EEeccccccccccccccCHHHHHHHHHHH
Confidence            88      88999999994 4433      4543           34567788887766

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.53  E-value=6.6e-08  Score=77.34  Aligned_cols=81  Identities=11%  Similarity=0.027  Sum_probs=61.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD  231 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~  231 (423)
                      ...+.++.|+++||++|+.+.|.++++++    .+.+..||.++. ...+++++++ .      ++|++  |.+|+.   
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~-~~~el~~~~g-~------~vP~l--~~~g~~---   76 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLP-ENSTWYERYK-F------DIPVF--HLNGQF---   76 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSS-TTHHHHHHSS-S------SCSEE--EESSSE---
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCc-chHHHHHHHC-C------CCCEE--EECCEE---
Confidence            35678899999999999999999887653    278999999822 2366888886 4      89986  456643   


Q ss_pred             CcccccCCCCHHHHHHHHHHh
Q 014549          232 CMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       232 ~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         ...|..+.+.|.+++.+.
T Consensus        77 ---~~~~g~~~~~l~~~l~~~   94 (100)
T 1wjk_A           77 ---LMMHRVNTSKLEKQLRKL   94 (100)
T ss_dssp             ---EEESSCCHHHHHHHHHSS
T ss_pred             ---EEecCCCHHHHHHHHHHH
Confidence               234667889999999765

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.53  E-value=4.1e-07  Score=79.01  Aligned_cols=91  Identities=10%  Similarity=0.018  Sum_probs=70.2

Q ss_pred             CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhhc-----cceEEEEEcccch-------------------------hhh
Q 014549          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG-----IANTGMVELGDIR-------------------------LAT  200 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~~-----~~~~~~Vdc~~~~-------------------------~~~  200 (423)
                      .+++++|.||++||++ |+...|.++++.++++.     .+.|..|+++.++                         ...
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3679999999999998 99999999999999963     5788888887321                         112


Q ss_pred             HHHhhCCCCccccccCcc---------------EEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          201 HLAERKPIGQIFFRRGLP---------------SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       201 ~l~~~~~~~~~~~i~~~P---------------ti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .+++.|+      |...|               +++++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       105 ~~~~~~~------v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~l~~l  162 (171)
T 2rli_A          105 QASHSYR------VYYNAGPKDEDQDYIVDHSIAIYLLNPDGLF----TDYYGRSRSAEQISDSVRRH  162 (171)
T ss_dssp             HHHHHSC------CCCEECCCCSSCCCCEECCCEEEEECTTSCE----EEEEESSCCHHHHHHHHHHH
T ss_pred             HHHHHhC------eEEEecCCCCCCCeEEeccceEEEECCCCeE----EEEECCCCCHHHHHHHHHHH
Confidence            4777787      77777               66665 55654    34677888999999998776

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.52  E-value=7.1e-08  Score=70.44  Aligned_cols=51  Identities=14%  Similarity=0.041  Sum_probs=46.3

Q ss_pred             cccccccccCC---CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCC
Q 014549           38 SHYDALGIKPY---SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTD   89 (423)
Q Consensus        38 d~y~~lg~~~~---a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~   89 (423)
                      .-|.||||+++   ++.++|+++||+|...+|||+. +..-....|+.|.+.|..
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHH
Confidence            46889999999   9999999999999999999996 778889999999998864

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.52  E-value=2.6e-07  Score=81.70  Aligned_cols=97  Identities=12%  Similarity=0.091  Sum_probs=70.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHhh-CCCC------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAER-KPIG------------  209 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~~-~~~~------------  209 (423)
                      .+++++|.||++||+.|+...|.++++++++++. +.|..|+|+.        .......+++ +++.            
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4679999999999999999999999999999876 7899999863        1223344555 3322            


Q ss_pred             --c---cccccCcc--------EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 --Q---IFFRRGLP--------SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 --~---~~~i~~~P--------ti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        .   .+.+.++|        ++++-++|..    ...|.|..+.++|.+.+.+.
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKV----VGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCE----EEEECTTSCHHHHHHHHHTT
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCCE----EEEeCCCCCHHHHHHHHHHH
Confidence              0   23366788        4555566655    34577888889998888654

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.48  E-value=3.3e-07  Score=80.05  Aligned_cols=96  Identities=8%  Similarity=-0.075  Sum_probs=65.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc--------cchhhhHHH-hhCCCC------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG--------DIRLATHLA-ERKPIG------------  209 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~--------~~~~~~~l~-~~~~~~------------  209 (423)
                      .+++++|.||++||+.|+ ..|.+.++.+++.+. +.|..|+++        ........+ +++++.            
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            468999999999999999 999999999999876 788899874        111122233 332211            


Q ss_pred             -----------ccccccCcc------EEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 -----------QIFFRRGLP------SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 -----------~~~~i~~~P------ti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                                 ..+++.++|      +.+++ ++|..    ...+.|..+.+.|.+.+.+.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  166 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKV----YERYSSLTKPSSLSETIEEL  166 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCE----EEEECTTSCGGGGHHHHHHH
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCE----EEEeCCCCCHHHHHHHHHHH
Confidence                       023488899      55555 66654    34667888888898888776

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.46  E-value=3.4e-07  Score=70.15  Aligned_cols=79  Identities=10%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~  235 (423)
                      ++.|+++||++|+++.+.+++++....+ +.+..+|.++++. ..+++++++.+    +.++|++  |.+|+.       
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~----~~~vP~i--~~~g~~-------   68 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKP----VETVPQI--FVDQQH-------   68 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCC----SCCSCEE--EETTEE-------
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCC----CceeCeE--EECCEE-------
Confidence            6789999999999999999999887654 7889999874421 23688887743    7799998  345532       


Q ss_pred             ccCCCCHHHHHHHHHHh
Q 014549          236 FEGELSVDAVTDWFATA  252 (423)
Q Consensus       236 y~G~~~~~~l~~fi~~~  252 (423)
                      ..|   .++|.+++.+.
T Consensus        69 i~~---~~~l~~~~~~~   82 (85)
T 1ego_A           69 IGG---YTDFAAWVKEN   82 (85)
T ss_dssp             EES---SHHHHHHHHHH
T ss_pred             EEC---HHHHHHHHHHh
Confidence            222   36788887664

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.45  E-value=4.6e-07  Score=78.51  Aligned_cols=97  Identities=8%  Similarity=-0.077  Sum_probs=70.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHh-hCCCCcc----------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAE-RKPIGQI----------  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~-~~~~~~~----------  211 (423)
                      .+++++|.||++||+.|+...|.+.++++++.+. +.|..|+++.        .......++ ++++...          
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4689999999999999999999999999999876 8999999852        122333455 5543200          


Q ss_pred             -------------ccc--cCcc---EEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 -------------FFR--RGLP---SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 -------------~~i--~~~P---ti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                                   +++  .++|   +.+++ ++|..    ...+.|..+.+.|.+.+.+.
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  166 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQV----VDRYYPTTSPLSLERDIKQL  166 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCE----EEEECTTSCGGGGHHHHHHH
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCE----EEeeCCCCCHHHHHHHHHHH
Confidence                         134  6778   65555 66654    34677888888899888776

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=2.9e-08  Score=85.51  Aligned_cols=95  Identities=8%  Similarity=-0.026  Sum_probs=62.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHH-HHHHhh--ccceEEEEEcccchh-hhHHHhhCCCC------------cccc--
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKT-IAALLE--GIANTGMVELGDIRL-ATHLAERKPIG------------QIFF--  213 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~-~A~~l~--~~~~~~~Vdc~~~~~-~~~l~~~~~~~------------~~~~--  213 (423)
                      .+++++|.||++||++|+...|.+++ +.+.+.  ..+.+..|++++++. .....+++++.            ..|.  
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            46789999999999999999999998 888776  347888888874422 22233333211            1222  


Q ss_pred             ccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          214 RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       214 i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      +.++|+++++ ++|..    ...+.| .+.+++.+++.+
T Consensus       112 ~~~~P~~~lid~~G~i----~~~~~g-~~~~~l~~~l~~  145 (159)
T 2ls5_A          112 DAGITRNVLIDREGKI----VKLTRL-YNEEEFASLVQQ  145 (159)
Confidence            4679999988 55654    223445 345556665543

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.39  E-value=8.2e-07  Score=76.84  Aligned_cols=97  Identities=8%  Similarity=-0.059  Sum_probs=67.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHH-HhhCCCCc-----------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHL-AERKPIGQ-----------  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l-~~~~~~~~-----------  210 (423)
                      .+++++|.||++||++|+...|.++++.+++.+. +.|..|+++.        ....... .+++++..           
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4689999999999999999999999999999875 7899999863        1122333 24443210           


Q ss_pred             ----cc--------c-----ccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 ----IF--------F-----RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ----~~--------~-----i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          .+        +     |..+|+.+++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  165 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQP----VKRYSPTTAPYDIEGDIMEL  165 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCE----EEEECTTSCGGGGHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCE----EEEcCCCCCHHHHHHHHHHH
Confidence                01        2     3445776666 55544    34567888888888888765

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.38  E-value=1.5e-06  Score=77.30  Aligned_cols=97  Identities=10%  Similarity=0.026  Sum_probs=68.7

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHh-hCCCC------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAE-RKPIG------------  209 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~-~~~~~------------  209 (423)
                      .++++||.||++||+.|+...|.+.++.+++++. +.|..|+++.        .......++ ++++.            
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            4689999999999999999999999999999876 7888898862        111122222 22321            


Q ss_pred             --------------ccccccCcc---EEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 --------------QIFFRRGLP---SLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 --------------~~~~i~~~P---ti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                                    ..+.+..+|   +.+++ ++|..    ...|.|..+.+.|.+.+.+.
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i----~~~~~g~~~~~~l~~~i~~l  181 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVP----VERFSPGASVKDIEEKLIPL  181 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCE----EEEECTTCCHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCE----EEEECCCCCHHHHHHHHHHH
Confidence                          011244566   76666 56654    44677888999999998876

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.37  E-value=2.1e-06  Score=71.39  Aligned_cols=101  Identities=18%  Similarity=0.221  Sum_probs=75.1

Q ss_pred             CCceee--cccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCe
Q 014549          256 LPRIFY--YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPA  333 (423)
Q Consensus       256 ~p~~~~--it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Pt  333 (423)
                      .|....  |++.+.++.|+...+  .++|.||.+.+....+.+..+|..+ +.+.|+.+.     +.+++++++++ .|+
T Consensus        18 gP~~~~~~i~s~~e~e~fi~~~~--v~VVGfF~~~~~~~~~~F~~~A~~~-~d~~F~~t~-----~~~v~~~~~v~-~~~   88 (124)
T 2l4c_A           18 GAAQEPTWLTDVPAAMEFIAATE--VAVIGFFQDLEIPAVPILHSMVQKF-PGVSFGIST-----DSEVLTHYNIT-GNT   88 (124)
T ss_dssp             CCSCCCEECCSHHHHHHHHHTSS--EEEEEECSCTTSTHHHHHHHHHHHC-TTSEEEEEC-----CHHHHHHTTCC-SSC
T ss_pred             CCCCcceEcCCHHHHHHHHhcCC--CEEEEEECCCCChhHHHHHHHHHhC-CCceEEEEC-----hHHHHHHcCCC-CCe
Confidence            454433  665555788886433  3455566653333467778888888 888998874     35699999997 799


Q ss_pred             EEEecCCCcceeEecC----CCChhHHHHHHHhhcc
Q 014549          334 IVFLKDPGVKPVVYYG----SFNNSRLSEVMEQNKL  365 (423)
Q Consensus       334 l~lfk~~~~~~~~y~g----~~~~~~l~~fi~~~~~  365 (423)
                      |++|++++..++.|.|    +++.+.|.+||..|.+
T Consensus        89 vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n~l  124 (124)
T 2l4c_A           89 ICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSL  124 (124)
T ss_dssp             EEEEETTTTEEEEECHHHHTTCCHHHHHHHHHHHCC
T ss_pred             EEEEEcCCCCceeecCcccCCCCHHHHHHHHHHhcC
Confidence            9999998888888986    7899999999998753

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.35  E-value=4.2e-07  Score=83.05  Aligned_cols=84  Identities=13%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE---------------------------------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE---------------------------------------  192 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd---------------------------------------  192 (423)
                      +.++.++.|+++||++|+++.|.++++++.  + +.+..+.                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~-v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--G-ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            467899999999999999999999988753  2 3332221                                       


Q ss_pred             -ccc-chhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          193 -LGD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       193 -c~~-~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.. -.....+++++|      |+++||+ ++.+|.       .+.|..+.+.|.+++.+.
T Consensus       162 ~~~~~v~~~~~l~~~~g------V~gtPt~-v~~dG~-------~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          162 SCDVDIADHYALGVQLG------VSGTPAV-VLSNGT-------LVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCSCCHHHHHHHHHHHT------CCSSSEE-ECTTSC-------EEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC------CCccCEE-EEcCCe-------EecCCCCHHHHHHHHHHh
Confidence             221 012355788888      9999998 565652       567988999999998765

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.35  E-value=8.5e-07  Score=78.37  Aligned_cols=96  Identities=5%  Similarity=-0.097  Sum_probs=67.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHhhCCCCc------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKPIGQ------------  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~~~~~~~------------  210 (423)
                      .+++++|.||++||+.|+...|.++++.+++++. +.|..|+++.        .......++++++..            
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            4689999999999999999999999999999875 7899998862        122334455554320            


Q ss_pred             ---cc----------c-----ccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          211 ---IF----------F-----RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       211 ---~~----------~-----i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                         .|          +     |+..|+++++ ++|..    ...|.|..+.+.|.+.+.+
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCV----VKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCE----EEEECTTSCTHHHHTTSGG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCE----EEEeCCCCCHHHHHHHHHH
Confidence               01          1     3345887777 55544    3456788787877776643

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.33  E-value=1.1e-06  Score=77.83  Aligned_cols=91  Identities=12%  Similarity=0.052  Sum_probs=69.2

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh----------------------hhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~----------------------~~~l~~~~~  207 (423)
                      .+++++|.|| ++||+.|+...|.+.++++++.+. +.|..|+++....                      ...+++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            3579999999 999999999999999999999864 7888888874211                      234666666


Q ss_pred             CCcccccc------CccEEEEe-CCCCCCCCCcccccCC----CCHHHHHHHHHHh
Q 014549          208 IGQIFFRR------GLPSLVAF-PPGCKSSDCMTRFEGE----LSVDAVTDWFATA  252 (423)
Q Consensus       208 ~~~~~~i~------~~Pti~~f-~~g~~~~~~~~~y~G~----~~~~~l~~fi~~~  252 (423)
                            +.      ++|+++++ ++|..    ...+.|.    ++.+.|.+.+.+.
T Consensus       110 ------v~~~~~g~~~P~~~lid~~G~i----~~~~~g~~~~~~~~~~l~~~l~~l  155 (187)
T 1we0_A          110 ------VLNEETGLADRGTFIIDPDGVI----QAIEINADGIGRDASTLINKVKAA  155 (187)
T ss_dssp             ------CEETTTTEECEEEEEECTTSBE----EEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             ------CCcCCCCceeeEEEEECCCCeE----EEEEecCCCCCCCHHHHHHHHHHH
Confidence                  87      89999999 55544    2344453    3788898888765

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.31  E-value=1.2e-06  Score=78.58  Aligned_cols=91  Identities=9%  Similarity=0.034  Sum_probs=68.9

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-------------------------hhHHHh
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAE  204 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-------------------------~~~l~~  204 (423)
                      .+++++|.|| ++||++|+...|.+.++.+++.+. +.|..|+++....                         ...+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            4578999999 999999999999999999998765 7888888873211                         234666


Q ss_pred             hCCCCcccccc-----CccEEEEe-CCCCCCCCCcccccCCC----CHHHHHHHHHHh
Q 014549          205 RKPIGQIFFRR-----GLPSLVAF-PPGCKSSDCMTRFEGEL----SVDAVTDWFATA  252 (423)
Q Consensus       205 ~~~~~~~~~i~-----~~Pti~~f-~~g~~~~~~~~~y~G~~----~~~~l~~fi~~~  252 (423)
                      .|+      +.     ++|+++++ ++|..    ...+.|..    +.++|.+.+.+.
T Consensus       112 ~~~------v~~~~g~~~P~~~lid~~G~i----~~~~~g~~~~~~~~~~l~~~l~~l  159 (198)
T 1zof_A          112 DYD------VLFEEAIALRGAFLIDKNMKV----RHAVINDLPLGRNADEMLRMVDAL  159 (198)
T ss_dssp             HTT------CEETTTEECEEEEEEETTTEE----EEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HhC------CcccCCcccceEEEECCCCEE----EEEEecCCCCCCCHHHHHHHHHHH
Confidence            676      88     89999888 45544    23444543    678888888765

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.30  E-value=2.1e-06  Score=77.93  Aligned_cols=43  Identities=9%  Similarity=-0.188  Sum_probs=39.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      .+++++|.|||+||+.|+...|.++++++++++. +.|..|+|+
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4679999999999999999999999999999876 788899986

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.29  E-value=1.5e-06  Score=76.14  Aligned_cols=86  Identities=14%  Similarity=0.120  Sum_probs=63.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEccc-----------------------------------
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD-----------------------------------  195 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~-----------------------------------  195 (423)
                      .+.++.++.|+++||++|+++.|..+++.++..+ +++...+..-                                   
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~   98 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKA   98 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCC
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCC
Confidence            3567899999999999999999999999887654 5554444210                                   


Q ss_pred             -------------------------------chhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHH
Q 014549          196 -------------------------------IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDA  244 (423)
Q Consensus       196 -------------------------------~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~  244 (423)
                                                     -.....+++++|      |.++||+++  +| .      .+.|..+.+.
T Consensus        99 ~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g------v~gtPt~~i--~g-~------~~~G~~~~~~  163 (175)
T 3gyk_A           99 NETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLG------FNGTPSFVV--ED-A------LVPGFVEQSQ  163 (175)
T ss_dssp             SHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHT------CCSSSEEEE--TT-E------EECSCCCHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC------CccCCEEEE--CC-E------EeeCCCCHHH
Confidence                                           012334566777      999999987  44 2      5779999999


Q ss_pred             HHHHHHHh
Q 014549          245 VTDWFATA  252 (423)
Q Consensus       245 l~~fi~~~  252 (423)
                      |.+.+.+.
T Consensus       164 l~~~i~~~  171 (175)
T 3gyk_A          164 LQDAVDRA  171 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.29  E-value=9.1e-07  Score=73.62  Aligned_cols=95  Identities=6%  Similarity=0.008  Sum_probs=78.1

Q ss_pred             eeEec-cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~-~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +..|+ .+++++.++++++++|-|+++||+.|   .+.|.++|+.+ ..+.||.++-.      +++++++      +. 
T Consensus        23 ~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~~~------~v~~~~~------v~-   85 (124)
T 2l4c_A           23 PTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGISTDS------EVLTHYN------IT-   85 (124)
T ss_dssp             CEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEECCH------HHHHHTT------CC-
T ss_pred             ceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEChH------HHHHHcC------CC-
Confidence            34464 46788888889999999999999998   78999999999 77899988643      3888998      77 


Q ss_pred             ccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      .|+|++|++....   ...|.|    ..+.++|.+||...
T Consensus        86 ~~~vvlfkkfde~---~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           86 GNTICLFRLVDNE---QLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             SSCEEEEETTTTE---EEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCC---ceeecCcccCCCCHHHHHHHHHHh
Confidence            7999999986532   457886    78999999999865

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.27  E-value=1.6e-06  Score=74.96  Aligned_cols=88  Identities=15%  Similarity=0.130  Sum_probs=63.0

Q ss_pred             CCc-EEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh------------------hhHHHhhCCCCcc
Q 014549          153 SKP-WLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL------------------ATHLAERKPIGQI  211 (423)
Q Consensus       153 ~~~-~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~------------------~~~l~~~~~~~~~  211 (423)
                      +++ ++|.|| ++||+.|+...|.+.++++++++. +.|..|+++....                  ...+++.|+    
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----  103 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYG----  103 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTT----
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcC----
Confidence            455 999999 999999999999999999999875 7888888863211                  234667777    


Q ss_pred             ccccC----ccEEEEeC-CCCCCCCCcccccCCC----CHHHHHHHHH
Q 014549          212 FFRRG----LPSLVAFP-PGCKSSDCMTRFEGEL----SVDAVTDWFA  250 (423)
Q Consensus       212 ~~i~~----~Pti~~f~-~g~~~~~~~~~y~G~~----~~~~l~~fi~  250 (423)
                        +.+    +|+++++- +|..    ...|.|..    ..+.+++.+.
T Consensus       104 --v~~~~~~~P~~~lid~~G~i----~~~~~g~~~~~~~~~~il~~l~  145 (161)
T 3drn_A          104 --AKGFILPARITFVIDKKGII----RHIYNSQMNPANHVNEALKALK  145 (161)
T ss_dssp             --CCCSSSCCCEEEEECTTSBE----EEEEECSSCTTHHHHHHHHHHH
T ss_pred             --CCCcCcccceEEEECCCCEE----EEEEecCCCCCcCHHHHHHHHH
Confidence              888    99988885 4543    33556633    2344444443

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.24  E-value=8.1e-06  Score=78.24  Aligned_cols=144  Identities=13%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             cccchhhhhhhhhcCCCc-eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHK-VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~-~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++..+ +++.+..  .++ ++|.|+++.|   ....|.+..++..+.+.+.++.+.........++++|+|.++||+++|
T Consensus        22 lt~~~-f~~~i~~--~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~   98 (298)
T 3ed3_A           22 LTPKS-FDKAIHN--TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF   98 (298)
T ss_dssp             CCHHH-HHHHHTS--SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEE
T ss_pred             eCHHH-HHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEE
Confidence            56555 4555532  223 5555666532   224577777888887778888887554345789999999999999999


Q ss_pred             cCCC----------------cceeEecCCCChhHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEE
Q 014549          338 KDPG----------------VKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVIL  401 (423)
Q Consensus       338 k~~~----------------~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~  401 (423)
                      +++.                ..+..|.|.++.+.|.+|+.+..-+.+.++++....+.....   .  .     ..+||+
T Consensus        99 ~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~---~--~-----~~~vi~  168 (298)
T 3ed3_A           99 RPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRK---S--P-----KLSVVL  168 (298)
T ss_dssp             ECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTS---C--S-----SEEEEE
T ss_pred             ECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhc---C--C-----ceEEEE
Confidence            9864                246789999999999999999776666677654433322111   0  1     377777


Q ss_pred             EccCC---hhhHHHHHHHhh
Q 014549          402 AGRLS---PELNKMREVSIS  418 (423)
Q Consensus       402 ~~~~~---~~~~~~~~~~~~  418 (423)
                      +....   ..+..+...|++
T Consensus       169 fs~~~~~~~~f~~~A~~~~~  188 (298)
T 3ed3_A          169 FSKQDKISPVYKSIALDWLG  188 (298)
T ss_dssp             EESSSSCCHHHHHHHHHTBT
T ss_pred             EcCCCcchHHHHHHHHHhhc
Confidence            75432   345666666654

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.24  E-value=2.5e-06  Score=76.21  Aligned_cols=91  Identities=12%  Similarity=0.014  Sum_probs=68.7

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh----------------------hhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~----------------------~~~l~~~~~  207 (423)
                      .+++++|.|| ++||+.|+...|.+.++.+++.+. +.|..|+++....                      ...+++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            3578999999 999999999999999999999864 7888888874221                      233555555


Q ss_pred             CCcccccc-----CccEEEEeC-CCCCCCCCcccccCC----CCHHHHHHHHHHh
Q 014549          208 IGQIFFRR-----GLPSLVAFP-PGCKSSDCMTRFEGE----LSVDAVTDWFATA  252 (423)
Q Consensus       208 ~~~~~~i~-----~~Pti~~f~-~g~~~~~~~~~y~G~----~~~~~l~~fi~~~  252 (423)
                            |.     ++|+++++. +|..    ...+.|.    ++.++|.+.+.+.
T Consensus       124 ------v~~~~g~~~P~~~lid~~G~i----~~~~~g~~~~~~~~~~l~~~l~~l  168 (195)
T 2bmx_A          124 ------VLNADGVADRVTFIVDPNNEI----QFVSATAGSVGRNVDEVLRVLDAL  168 (195)
T ss_dssp             ------CBCTTSSBCEEEEEECTTSBE----EEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             ------CcccCCCccceEEEEcCCCeE----EEEEecCCCCCCCHHHHHHHHHHH
Confidence                  88     899999995 4543    2344454    3788999988776

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.23  E-value=1.7e-06  Score=74.37  Aligned_cols=90  Identities=11%  Similarity=0.018  Sum_probs=63.7

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh--------------------hhHHHhhCCCC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL--------------------ATHLAERKPIG  209 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~--------------------~~~l~~~~~~~  209 (423)
                      ..++++|.|| ++||++|+...|.+.++++++++. +.|..|+++....                    ...+++.|+  
T Consensus        35 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--  112 (160)
T 1xvw_A           35 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYG--  112 (160)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTT--
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcC--
Confidence            3348999998 999999999999999999998754 7888888863211                    345777887  


Q ss_pred             cccccc----Ccc--EEEEe-CCCCCCCCCcccccCCC----CHHHHHHHHHH
Q 014549          210 QIFFRR----GLP--SLVAF-PPGCKSSDCMTRFEGEL----SVDAVTDWFAT  251 (423)
Q Consensus       210 ~~~~i~----~~P--ti~~f-~~g~~~~~~~~~y~G~~----~~~~l~~fi~~  251 (423)
                          +.    ++|  +.+++ ++|..    ...+.|..    ..+.+++.+.+
T Consensus       113 ----v~~~~~~~p~~~~~lid~~G~i----~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          113 ----VFNEQAGIANRGTFVVDRSGII----RFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             ----CEETTTTEECSEEEEECTTSBE----EEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ----CccccCCCeeeeEEEECCCCeE----EEEEecCCCCCCCHHHHHHHHHH
Confidence                87    899  55555 56654    23444543    45666666543

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.23  E-value=2.6e-06  Score=75.47  Aligned_cols=96  Identities=5%  Similarity=-0.096  Sum_probs=65.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHhhCCCCc------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKPIGQ------------  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~~~~~~~------------  210 (423)
                      .+++++|.||++||+.|+...|.+.++.+++++. +.|..|+++.        .....+.++++++..            
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            4679999999999999999999999999999875 7899998862        112344666666430            


Q ss_pred             ---cc----------c-----ccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          211 ---IF----------F-----RRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       211 ---~~----------~-----i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                         .+          +     |+..|+.+++ ++|..    ...|.|..+.++|.+.+.+
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~  183 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCV----VKRYGPMEEPLVIEKDLPH  183 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCE----EEEECTTSCGGGGGGGHHH
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCE----EEeeCCCCCHHHHHHHHHH
Confidence               01          1     2224676666 44543    3456677777777666654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.20  E-value=5.8e-06  Score=69.70  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=69.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCCCC-----CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTGER-----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV  335 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~~~-----~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~  335 (423)
                      +++.+ +++++.+  ...++++ |..+.+.+     ..|.+..++.+|.+.+.|+.|++.+  .++++.+|+|.+.||++
T Consensus        20 vt~~~-F~~~v~~--~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe--~~~la~~ygV~siPTli   94 (137)
T 2qsi_A           20 VDEAT-VDDFIAH--SGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEA--ERGLMARFGVAVCPSLA   94 (137)
T ss_dssp             ECTTT-HHHHHHT--SSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGG--HHHHHHHHTCCSSSEEE
T ss_pred             cCHhH-HHHHHhc--CCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCC--CHHHHHHcCCccCCEEE
Confidence            55655 4555532  2225555 44543333     5788899999998888998887433  47899999999999999


Q ss_pred             EecCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          336 FLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       336 lfk~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      +||++... ....|..+.+.|.++|+++.
T Consensus        95 lFkdG~~v-~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           95 VVQPERTL-GVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEECCEEE-EEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEEE-EEEeCCCCHHHHHHHHHHHh
Confidence            99976543 33478888899999998754

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.19  E-value=5e-06  Score=73.18  Aligned_cols=97  Identities=10%  Similarity=0.030  Sum_probs=67.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHhh-CCCCccc---------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAER-KPIGQIF---------  212 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~~-~~~~~~~---------  212 (423)
                      .++++||.||++||+.|+...|.+.++++++++. +.|..|+++.        .......+++ +++....         
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            4679999999999999999999999999999876 7888888752        1223445666 5433111         


Q ss_pred             ------c-----ccCccE-----EEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 ------F-----RRGLPS-----LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ------~-----i~~~Pt-----i~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                            .     +.+.|+     +++-++|..    ...|.|..+.+.|.+.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i----~~~~~g~~~~~~l~~~i~~l  168 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQV----VKFWRPEEPIEVIRPDIAAL  168 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCE----EEEECTTCCGGGTHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCE----EEEECCCCCHHHHHHHHHHH
Confidence                  0     112564     666666655    34677877777777766655

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.17  E-value=6.6e-06  Score=76.34  Aligned_cols=99  Identities=16%  Similarity=0.191  Sum_probs=74.7

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEe--cCCCCCchHHHHHHHhcc--ccceEEEEEccc--cc-cHHHHhhcCCC--CCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYW--AYASFAFVLWRE--EE-SSIWWNTFEVE--SAP  332 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~--~~~~~~~~~~~~~a~~~~--~~~~f~~v~~~~--~~-~~~l~~~f~v~--~~P  332 (423)
                      +++.+ ++..+...  ..++|.|+.  +.|. ..|.+..+|..+.  ..+.|+.|.+.+  |+ .++++++|+|.  ++|
T Consensus        10 Lt~~n-F~~~i~~~--~~vlV~FyA~~pWCg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~P   85 (240)
T 2qc7_A           10 LDTVT-FYKVIPKS--KFVLVKFDTQYPYGE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYP   85 (240)
T ss_dssp             CCTTH-HHHHGGGC--SEEEEEECCSSCCSH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCS
T ss_pred             CCHHH-HHHHHcCC--CCEEEEEeCCCCCCc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCC
Confidence            56655 45555432  235666777  6555 6788888888875  357788887554  54 37899999999  999


Q ss_pred             eEEEecCCC-cceeEecCCCChhHHHHHHHhhc
Q 014549          333 AIVFLKDPG-VKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       333 tl~lfk~~~-~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      |+++|+++. ..+..|.|.++.+.|.+||+++.
T Consensus        86 Tl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           86 VFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             EEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            999999876 46788999999999999999873

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.16  E-value=1.7e-06  Score=78.68  Aligned_cols=84  Identities=17%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE---------------------------------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE---------------------------------------  192 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd---------------------------------------  192 (423)
                      +.++.++.|+++||++|+++.|..+++.+.  + +++..+.                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--G-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            567899999999999999999999887652  2 3332211                                       


Q ss_pred             -ccc-chhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          193 -LGD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       193 -c~~-~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.. -.....+++++|      |+++||+++ .+|.       .+.|..+.+.|.+++.+.
T Consensus       162 ~~~~~v~~~~~l~~~~g------V~gTPt~vi-~nG~-------~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFG------VRGTPSIVT-STGE-------LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CCSSHHHHHHHHHHHHT------CCSSCEEEC-TTSC-------CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcC------CCcCCEEEE-eCCE-------EecCCCCHHHHHHHHHhc
Confidence             110 012345778888      999999987 5663       467888999999988653

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.13  E-value=1e-05  Score=71.43  Aligned_cols=111  Identities=8%  Similarity=0.072  Sum_probs=74.3

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEec---------CC--CCCchHHHHHHHhcc-----ccceEEEEEccccccHHHHhh
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSK---------TG--ERASPFVRQISRNYW-----AYASFAFVLWREEESSIWWNT  325 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~---------~~--~~~~~~~~~~a~~~~-----~~~~f~~v~~~~~~~~~l~~~  325 (423)
                      +|+.+ +++++.+. .+.++|+.|..         ++  +...|.+..+|.+|.     +.+.|+.|.+.+  .++++++
T Consensus        23 lt~~n-F~~~v~~~-~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~--~~~la~~   98 (178)
T 3ga4_A           23 VTADN-YPLLSRGV-PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE--VPQLVKD   98 (178)
T ss_dssp             CCTTT-HHHHTTCC-TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT--CHHHHHH
T ss_pred             CCHHH-HHHHHccc-CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc--CHHHHHH
Confidence            67766 45666432 23455555432         21  224678888998887     678888887543  4789999


Q ss_pred             cCCCCCCeEEEecCCCcce-----------eEe---cC-CCChhHHHHHHHhhccccCcccccccc
Q 014549          326 FEVESAPAIVFLKDPGVKP-----------VVY---YG-SFNNSRLSEVMEQNKLQELPQLRSVTS  376 (423)
Q Consensus       326 f~v~~~Ptl~lfk~~~~~~-----------~~y---~g-~~~~~~l~~fi~~~~~~~lp~l~~~~~  376 (423)
                      |+|.+.|||++|+++....           ..|   .| .++.+.|.+||.+..-..++-..+.+.
T Consensus        99 ~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I~rp~ny  164 (178)
T 3ga4_A           99 LKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITVPQAFNV  164 (178)
T ss_dssp             TTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCCCCSCC-
T ss_pred             cCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccccCCCCh
Confidence            9999999999999886544           445   35 778899999999854444433333333

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.11  E-value=2.1e-05  Score=68.26  Aligned_cols=97  Identities=11%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             CCCcEEEEEecCCCc-cccccHHHHHHHHHHhhcc---ceEEEEEcccc----hhhhHHHhhCCCCc-------------
Q 014549          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEGI---ANTGMVELGDI----RLATHLAERKPIGQ-------------  210 (423)
Q Consensus       152 ~~~~~lV~FYapwC~-~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~----~~~~~l~~~~~~~~-------------  210 (423)
                      .+++++|.||++||+ .|....|.+.++.+.+...   +.|..|+++..    ......++++++..             
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            467899999999999 9999999999999988764   78999998621    12233455554321             


Q ss_pred             ------------------cccccCccEEEEeC-CCCCCCCCcccccCCC--CHHHHHHHHHHh
Q 014549          211 ------------------IFFRRGLPSLVAFP-PGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (423)
Q Consensus       211 ------------------~~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~--~~~~l~~fi~~~  252 (423)
                                        .+.+.+.|+++++- +|..    ...|.|..  +.++|.+.+.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i----~~~~~g~~~~~~~~l~~~l~~l  170 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKV----LKDYNGVENTPYDDIISDVKSA  170 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEE----EEEEESSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeE----EEEEcCCCCCCHHHHHHHHHHH
Confidence                              02356788866664 4443    34566765  578898888765

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.10  E-value=1.5e-06  Score=65.94  Aligned_cols=72  Identities=11%  Similarity=0.141  Sum_probs=49.2

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      ++.|+++||++|+++.+.+++.      .+.+..+|.++++...+..++++      +.++|++.  .+|..       .
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g------~~~vP~~~--~~g~~-------~   61 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQG------FRQLPVVI--AGDLS-------W   61 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CCSSCEEE--ETTEE-------E
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhC------CCccCEEE--ECCEE-------E
Confidence            5789999999999999888753      26788899986544333334577      88999983  35522       2


Q ss_pred             cCCCCHHHHHHHHH
Q 014549          237 EGELSVDAVTDWFA  250 (423)
Q Consensus       237 ~G~~~~~~l~~fi~  250 (423)
                       |..+.+.|.+++.
T Consensus        62 -~g~~~~~l~~~l~   74 (81)
T 1h75_A           62 -SGFRPDMINRLHP   74 (81)
T ss_dssp             -ESCCHHHHGGGSC
T ss_pred             -ecCCHHHHHHHHh
Confidence             3345666666553

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.06  E-value=7.1e-07  Score=80.42  Aligned_cols=44  Identities=14%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEccc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGD  195 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~  195 (423)
                      +.++++|+||++||+||+++.|.|   +++++.+.+.++|.+++.+.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCc
Confidence            467899999999999999999999   99999998889999999874

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.05  E-value=9.3e-06  Score=68.71  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=69.0

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEe-cCCCC-----CchHHHHHHHhcccc-ceEEEEEccccccHHHHhhcCCCCCCeE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFS-KTGER-----ASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAI  334 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~-~~~~~-----~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~~f~v~~~Ptl  334 (423)
                      +++.+ +++++.+.   .+++++|. +.+.|     ..|.+..+|.+|.+. +.|+.|++.+  .++++.+|+|.+.||+
T Consensus        22 ~t~~~-F~~~v~~~---~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe--~~~lA~~ygV~sIPTl   95 (140)
T 2qgv_A           22 VSESR-LDDWLTQA---PDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ--SEAIGDRFGAFRFPAT   95 (140)
T ss_dssp             CCHHH-HHHHHHTC---SSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH--HHHHHHHHTCCSSSEE
T ss_pred             CCHHH-HHHHHhCC---CCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC--CHHHHHHcCCccCCEE
Confidence            55555 55555422   24555554 22222     578889999999888 8988886443  4789999999999999


Q ss_pred             EEecCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          335 VFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       335 ~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      ++||+|... -...|..+.+.|.+||+++.
T Consensus        96 ilFk~G~~v-~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           96 LVFTGGNYR-GVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             EEEETTEEE-EEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEE-EEEecCCCHHHHHHHHHHHh
Confidence            999976543 34478888899999998754

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.03  E-value=8.5e-06  Score=60.44  Aligned_cols=71  Identities=8%  Similarity=0.003  Sum_probs=49.8

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      ++.|+++||++|+++.+.+++.      .+.+..+|.++++...+..++++      +.++|++..  +|.       ..
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~------~~~vP~l~~--~g~-------~~   61 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALG------YVQAPVVEV--DGE-------HW   61 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CBCCCEEEE--TTE-------EE
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcC------CCccCEEEE--CCe-------EE
Confidence            5779999999999999888754      26778889885543222224678      889999874  442       23


Q ss_pred             cCCCCHHHHHHHH
Q 014549          237 EGELSVDAVTDWF  249 (423)
Q Consensus       237 ~G~~~~~~l~~fi  249 (423)
                       |..+.+.|.+++
T Consensus        62 -~g~~~~~l~~~l   73 (75)
T 1r7h_A           62 -SGFRPERIKQLQ   73 (75)
T ss_dssp             -ESCCHHHHHHHH
T ss_pred             -cCCCHHHHHHHH
Confidence             335677777775

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.03  E-value=1.4e-05  Score=72.95  Aligned_cols=90  Identities=13%  Similarity=0.067  Sum_probs=67.3

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchh-------------------------hhHHHhh
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRL-------------------------ATHLAER  205 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~-------------------------~~~l~~~  205 (423)
                      +++++|.|| ++||+.|+...|.+.+++++++. .+.|..|+++....                         ...+++.
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            489999999 99999999999999999999975 47888888873211                         2346666


Q ss_pred             CCCCcccccc------CccEEEEeC-CCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          206 KPIGQIFFRR------GLPSLVAFP-PGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       206 ~~~~~~~~i~------~~Pti~~f~-~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      |+      +.      .+|+++++- +|..    ...+.|    .++.+++.+.+...
T Consensus       136 yg------v~~~~~g~~~P~~~liD~~G~I----~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          136 YG------VLLEGPGLALRGLFIIDPNGVI----KHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             TT------CEETTTTEECEEEEEECTTSBE----EEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             hC------CeecCCCcccceEEEECCCCEE----EEEEecCCCCCCCHHHHHHHHHHh
Confidence            66      87      899999994 4543    122233    35778888888765

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.02  E-value=2e-05  Score=65.83  Aligned_cols=108  Identities=11%  Similarity=0.115  Sum_probs=72.1

Q ss_pred             CCceeecccchhhhhhhhhcCCCceEEEEEecCCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC--C
Q 014549          256 LPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--A  331 (423)
Q Consensus       256 ~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~  331 (423)
                      .|....+|.++ ++.++++.  ..++|.|++.+++|  ..|.+..+|.+|++.+.|+.++..+  .+.++++|||.+  .
T Consensus         5 ~plv~~~t~~~-f~~~~~~~--~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~--~~~~a~~~gi~~~~i   79 (133)
T 2djk_A            5 SPLIGEIGPET-YSDYMSAG--IPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDKF   79 (133)
T ss_dssp             CCCSEECCHHH-HHHHHHTT--SCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSSS
T ss_pred             cCceeccChHH-HHHHhcCC--CCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHH--hHHHHHHcCCCcccC
Confidence            34444456555 34444322  12444455543333  3577788999999899999987543  357999999998  9


Q ss_pred             CeEEEecCCCcceeEec--CCCChhHHHHHHHhhccccC
Q 014549          332 PAIVFLKDPGVKPVVYY--GSFNNSRLSEVMEQNKLQEL  368 (423)
Q Consensus       332 Ptl~lfk~~~~~~~~y~--g~~~~~~l~~fi~~~~~~~l  368 (423)
                      |++++|+..+.+...+.  |.++.+.|.+||++..-..+
T Consensus        80 Ptl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           80 PAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             SEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             CEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCc
Confidence            99999986222223434  88999999999998765555

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.01  E-value=2.4e-05  Score=72.83  Aligned_cols=98  Identities=17%  Similarity=0.105  Sum_probs=72.7

Q ss_pred             cccchhhhhhhhhcCCCceEEEEE--ecCCCCCchHHHHHHHhcc---ccceEEEEEccc---cccHHHHhhcCCC--CC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFF--SKTGERASPFVRQISRNYW---AYASFAFVLWRE---EESSIWWNTFEVE--SA  331 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f--~~~~~~~~~~~~~~a~~~~---~~~~f~~v~~~~---~~~~~l~~~f~v~--~~  331 (423)
                      +++.+ ++..+...  ..++|.|+  .+.|. ..|.+..+|..|.   ..+.|+.|...+   .+.++++++|+|.  ++
T Consensus        21 Lt~~n-F~~vi~~~--~~vlV~Fy~~ApWCg-l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~   96 (248)
T 2c0g_A           21 LDELS-FEKTVERF--PYSVVKFDIASPYGE-KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNF   96 (248)
T ss_dssp             CCTTT-HHHHHTTS--SEEEEEEEESSCCSH-HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSC
T ss_pred             CCHHH-HHHHHhcC--CCEEEEEECCCCCCc-cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCC
Confidence            56655 44455432  23566677  56555 7888888998874   367788886544   1147899999999  99


Q ss_pred             CeEEEecCCC-cceeEe--cCCCChhHHHHHHHhhc
Q 014549          332 PAIVFLKDPG-VKPVVY--YGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       332 Ptl~lfk~~~-~~~~~y--~g~~~~~~l~~fi~~~~  364 (423)
                      |||++|+ +. ..+..|  .|..+.+.|.+||+++.
T Consensus        97 PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           97 PSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             CEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence            9999999 66 457888  89999999999999864

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.01  E-value=3.3e-05  Score=61.99  Aligned_cols=97  Identities=22%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++.+... .++++++ |+++.+   ....|.+..++..+. .+.|+.|...  +.++++++|+|.+.||+++|
T Consensus         5 i~~~~~f~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d--~~~~l~~~~~V~~~PT~~~~   80 (105)
T 3zzx_A            5 VKDQEDFTKQLNEA-GNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVD--ECEDIAQDNQIACMPTFLFM   80 (105)
T ss_dssp             CCSHHHHHHHHHHT-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETT--TCHHHHHHTTCCBSSEEEEE
T ss_pred             eCCHHHHHHHHHhc-CCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecc--cCHHHHHHcCCCeecEEEEE
Confidence            44444456666543 3456555 555432   224577777887764 4567766533  24789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      ++|. .-..+.| .+.+.|.+||++|+
T Consensus        81 ~~G~-~v~~~~G-~~~~~l~~~i~k~K  105 (105)
T 3zzx_A           81 KNGQ-KLDSLSG-ANYDKLLELVEKNK  105 (105)
T ss_dssp             ETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             ECCE-EEEEEeC-cCHHHHHHHHHhcC
Confidence            8653 3334567 58899999999875

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.00  E-value=1.4e-05  Score=71.09  Aligned_cols=91  Identities=14%  Similarity=0.078  Sum_probs=66.5

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-------------------------hhHHHh
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAE  204 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-------------------------~~~l~~  204 (423)
                      .+++++|.|| ++||++|+...|.+.++++++++. +.|..|+++....                         ...+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            4578999999 999999999999999999998754 7888888863211                         234666


Q ss_pred             hCCCCcccccc-----CccEEEEe-CCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          205 RKPIGQIFFRR-----GLPSLVAF-PPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       205 ~~~~~~~~~i~-----~~Pti~~f-~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      .|+      +.     .+|+++++ ++|..    ...+.|    .++.+++.+.+.+.
T Consensus       110 ~~g------v~~~~g~~~P~~~liD~~G~i----~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          110 SYD------VLFNESVALRAFVLIDKQGVV----QHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             HTT------CEETTTEECCEEEEECTTSBE----EEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhC------CcCcCCceeeEEEEEcCCCEE----EEEEeCCCCCCCCHHHHHHHHHHH
Confidence            666      88     89999999 45543    223334    34578888877654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.00  E-value=2.2e-05  Score=70.44  Aligned_cols=93  Identities=8%  Similarity=-0.087  Sum_probs=64.2

Q ss_pred             CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhhc----cceEEEEEcccc-------------------------hhhhH
Q 014549          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG----IANTGMVELGDI-------------------------RLATH  201 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~~----~~~~~~Vdc~~~-------------------------~~~~~  201 (423)
                      .+++++|.||++||++ |....|.+.++.+.+..    .+.|..|+++..                         .....
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            3679999999999998 99999999998887763    478888887731                         01234


Q ss_pred             HHhhCCCCcccccc-Cc---------------cEEEE-eCCCCCCCCCcccccCCCCHHHHHHHHHHhhc
Q 014549          202 LAERKPIGQIFFRR-GL---------------PSLVA-FPPGCKSSDCMTRFEGELSVDAVTDWFATAIL  254 (423)
Q Consensus       202 l~~~~~~~~~~~i~-~~---------------Pti~~-f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~  254 (423)
                      +++.|+      |. +.               |++++ -++|..    ...|.|..+.+.+.+.+.+.+.
T Consensus       120 ~~~~~g------v~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i----~~~~~g~~~~~~~~~~i~~~l~  179 (200)
T 2b7k_A          120 ACKKYR------VYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQF----VDALGRNYDEKTGVDKIVEHVK  179 (200)
T ss_dssp             HHHHTT------C--------------CTTTCCCEEEECTTSCE----EEEECTTCCTTHHHHHHHHHHH
T ss_pred             HHHHcC------cEEeeccccCCCCCceeeecceEEEECCCCcE----EEEeCCCCCHHHHHHHHHHHHH
Confidence            667777      44 23               35444 455654    3456677777888888777643

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.98  E-value=1.2e-05  Score=71.67  Aligned_cols=44  Identities=9%  Similarity=0.017  Sum_probs=38.5

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~  194 (423)
                      .+.++.+|.||++||++|+++.|.++++++.+.+.+.+..++..
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            45788999999999999999999999999988777777777764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.91  E-value=1.8e-05  Score=70.97  Aligned_cols=91  Identities=10%  Similarity=0.029  Sum_probs=66.4

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh-------------------------hHHHhh
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA-------------------------THLAER  205 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~-------------------------~~l~~~  205 (423)
                      +++++|.|| ++||+.|+...|.+.++++++++. +.|..|+++.....                         ..+++.
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            578999999 999999999999999999999764 78888988742222                         234555


Q ss_pred             CCCCcccccc------CccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          206 KPIGQIFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       206 ~~~~~~~~i~------~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      |+      +.      ++|+++++-++...   ...+.|    .++.++|.+.+.+.
T Consensus       116 yg------v~~~~~g~~~P~~~lid~~G~i---~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A          116 YG------VLKEEDGVAYRGLFIIDPKQNL---RQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             HT------CEETTTTEECEEEEEECTTSBE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cC------CccCCCCceeeEEEEECCCCEE---EEEEeCCCCCCCCHHHHHHHHHHh
Confidence            55      88      89998888544331   222323    35678888888765

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.91  E-value=1.3e-05  Score=71.30  Aligned_cols=42  Identities=12%  Similarity=0.056  Sum_probs=35.5

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc  193 (423)
                      +.++.+|+|+++||++|+++.|.++++.+.+.+.+.+-.+..
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            578899999999999999999999999998876666655543

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=97.89  E-value=5e-05  Score=62.48  Aligned_cols=98  Identities=15%  Similarity=0.087  Sum_probs=65.4

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhcc-----ccceEEEEEccccccHHHHhhcCCCCCCe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYW-----AYASFAFVLWREEESSIWWNTFEVESAPA  333 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~-----~~~~f~~v~~~~~~~~~l~~~f~v~~~Pt  333 (423)
                      ++..+ ++..+.. ....++|.|+++.+   ....|.+..++..+.     ..+.|+.+...  +...++++|+|.++||
T Consensus        20 l~~~~-f~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt   95 (127)
T 3h79_A           20 LTDET-FDSIVMD-PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE--KYPDVIERMRVSGFPT   95 (127)
T ss_dssp             CCTTT-HHHHHTC-TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT--TCHHHHHHTTCCSSSE
T ss_pred             CChhh-HHHHHhC-CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc--ccHhHHHhcCCccCCE
Confidence            56555 4444432 11224555555432   224566777776543     34666666432  2478999999999999


Q ss_pred             EEEecCCCcc-eeEecCCCChhHHHHHHHhh
Q 014549          334 IVFLKDPGVK-PVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       334 l~lfk~~~~~-~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++|+++... +..|.|..+.+.|.+||+++
T Consensus        96 ~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           96 MRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             EEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            9999887653 47889999999999999875

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.88  E-value=1.4e-05  Score=74.13  Aligned_cols=89  Identities=10%  Similarity=0.047  Sum_probs=61.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc-------------------------------------
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-------------------------------------  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-------------------------------------  194 (423)
                      +.+..++.|+++||++|+++.|..+++.+.  +.++|..+...                                     
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~  173 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  173 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCc
Confidence            456789999999999999999998887664  44554433321                                     


Q ss_pred             ----------cchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          195 ----------DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       195 ----------~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                                .-.....+++++|      |+++||+++...+..    .....|..+.+.|.+++.+.
T Consensus       174 ~~~~~~~~~~~v~~~~~l~~~~g------v~gtPt~vi~~~~G~----~~~~~G~~~~~~L~~~l~~~  231 (241)
T 1v58_A          174 PANVSTEQMKVLSDNEKLMDDLG------ANVTPAIYYMSKENT----LQQAVGLPDQKTLNIIMGNK  231 (241)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHT------CCSSCEEEEEETTTE----EEEEESSCCHHHHHHHTTC-
T ss_pred             cccCCHHHHHHHHHHHHHHHHcC------CCCCCEEEEECCCCC----EEEecCCCCHHHHHHHHHHH
Confidence                      0001234667777      999999999753222    12567989999999887654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.88  E-value=5.8e-05  Score=65.16  Aligned_cols=91  Identities=13%  Similarity=-0.027  Sum_probs=62.8

Q ss_pred             CCCcEEEEEecCC-CccccccHHHHHHHHHHhhccceEEEEEcccchh--------------------hhHHHhhCCCCc
Q 014549          152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--------------------ATHLAERKPIGQ  210 (423)
Q Consensus       152 ~~~~~lV~FYapw-C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~--------------------~~~l~~~~~~~~  210 (423)
                      .+++++|.||++| |++|+...|.+.++++++ ..+.+..|+++....                    ...+++.|+   
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---  118 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFG---  118 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTT---
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhC---
Confidence            3679999999999 999999999999999999 667888888773221                    234555555   


Q ss_pred             cccccC------ccEEEEeCCCCCCCCCcccccC-----CCCHHHHHHHHHHh
Q 014549          211 IFFRRG------LPSLVAFPPGCKSSDCMTRFEG-----ELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~------~Pti~~f~~g~~~~~~~~~y~G-----~~~~~~l~~fi~~~  252 (423)
                         +..      .|+.+++-++...   ...+.|     ..+.+++++.+.+.
T Consensus       119 ---v~~~~~g~~~p~~~lid~~G~i---~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          119 ---VYIKELRLLARSVFVLDENGKV---VYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             ---CBBTTTCSBCCEEEEECTTSCE---EEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             ---CccccCCceeeEEEEEcCCCcE---EEEEecCCcCCCCCHHHHHHHHHHh
Confidence               554      4888777543331   233433     22457788777654

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.86  E-value=0.00013  Score=59.94  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.   +....|.+..++..+.+.+.|+.+....  ...++++|+|.++|++++|+++......|.|..+.+.|
T Consensus        38 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l  115 (130)
T 2dml_A           38 WLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADK--HQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAI  115 (130)
T ss_dssp             EEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTT--CHHHHHHHTCCSSSEEEEESSCTTSCEECCSCCSHHHH
T ss_pred             EEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCC--CHHHHHHcCCCccCEEEEEeCCCCeEEEeecCCCHHHH
Confidence            455555542   2334577788888887777777776432  36799999999999999998776656778999999999


Q ss_pred             HHHHHhh
Q 014549          357 SEVMEQN  363 (423)
Q Consensus       357 ~~fi~~~  363 (423)
                      .+|+.+.
T Consensus       116 ~~~l~~~  122 (130)
T 2dml_A          116 VDAALSA  122 (130)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.85  E-value=4.9e-06  Score=66.38  Aligned_cols=69  Identities=12%  Similarity=0.123  Sum_probs=47.4

Q ss_pred             cccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch----hhhHHHhhCCCCccccccCccEEE
Q 014549          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       146 f~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~----~~~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      +++++.+..  ++.|+++||++|+++.+.+++++....   .+..+|.+++.    ....+++.++      +.++|++ 
T Consensus         5 ~~~~i~~~~--v~~f~~~~C~~C~~~~~~L~~~~~~~~---~~~~vdi~~~~~~~~~~~~l~~~~g------~~~vP~i-   72 (105)
T 1kte_A            5 VNSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG---LLEFVDITATSDTNEIQDYLQQLTG------ARTVPRV-   72 (105)
T ss_dssp             HHHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT---SEEEEEGGGSTTHHHHHHHHHHHHS------CCCSCEE-
T ss_pred             HHhhcccCC--EEEEEcCCCHhHHHHHHHHHHcCCCCC---ccEEEEccCCCCHHHHHHHHHHHhC------CCCcCeE-
Confidence            344554443  677999999999999999887643322   17778887542    1235778888      8899997 


Q ss_pred             EeCCCC
Q 014549          222 AFPPGC  227 (423)
Q Consensus       222 ~f~~g~  227 (423)
                       |.+|.
T Consensus        73 -~~~g~   77 (105)
T 1kte_A           73 -FIGKE   77 (105)
T ss_dssp             -EETTE
T ss_pred             -EECCE
Confidence             34553

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.83  E-value=0.00025  Score=65.29  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             CCCcEEEEEe-cCCCcccc-ccHHHHHHHHHHhhcc-c-eEEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCG-QFSGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~-~~~p~~~~~A~~l~~~-~-~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++|.|| +.||+.|. .-.|.+.++++++++. + .|..|+.+........+++++
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~   91 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEK   91 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcC
Confidence            3568899999 99999999 8999999999998754 6 788888764333344455544

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.80  E-value=4.1e-05  Score=69.53  Aligned_cols=92  Identities=12%  Similarity=0.031  Sum_probs=65.8

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchh-------------------------hhHHHh
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRL-------------------------ATHLAE  204 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~-------------------------~~~l~~  204 (423)
                      .+++++|.|| ++||+.|+...|.+.+++++++. .+.|..|+++....                         ...+++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            4578999999 99999999999999999999975 37888888763211                         234556


Q ss_pred             hCCCCcccccc-----CccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          205 RKPIGQIFFRR-----GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       205 ~~~~~~~~~i~-----~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      .|+      +.     ..|+++++-++...   ...+.|    .++.++|.+.+...
T Consensus       131 ~yg------v~~~~g~~~p~~~lID~~G~i---~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          131 DYN------VLFDDSVSLRAFVLIDMNGIV---QHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HTT------CEETTTEECEEEEEECTTSBE---EEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HhC------CccccCCcccEEEEECCCCEE---EEEEecCCCCCCCHHHHHHHHHHH
Confidence            666      87     78988888544332   222223    35688888888655

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.80  E-value=6.6e-05  Score=63.72  Aligned_cols=98  Identities=13%  Similarity=0.149  Sum_probs=60.3

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecC-----CCCCchHHHHHHHhccccce--EEEEEccccccHHHHhhcCCCCCCeE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKT-----GERASPFVRQISRNYWAYAS--FAFVLWREEESSIWWNTFEVESAPAI  334 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~-----~~~~~~~~~~~a~~~~~~~~--f~~v~~~~~~~~~l~~~f~v~~~Ptl  334 (423)
                      +++++ +++++....  .++|.|+...     +....|.+..++.+| +.+.  |+.|+..+  .++++++|+|.+.||+
T Consensus        22 l~~~~-f~~~i~~~~--~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~--~~~la~~~~V~~iPT~   95 (142)
T 2es7_A           22 VEAST-VDDWIKRVG--DGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQ--SEAIGDRFNVRRFPAT   95 (142)
T ss_dssp             CCCC---------CC--SEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHH--HHHHHHTTTCCSSSEE
T ss_pred             ccccc-HHHHHHhCC--CEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCC--CHHHHHhcCCCcCCeE
Confidence            55544 566665432  2444443321     223568888899888 7777  77775332  3689999999999999


Q ss_pred             EEecCCCcceeEecCCCChhHHHHHHHhhccc
Q 014549          335 VFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       335 ~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~  366 (423)
                      ++|++|. ....+.|..+.+.|.+||++..-.
T Consensus        96 ~~fk~G~-~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           96 LVFTDGK-LRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             EEESCC-----CEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEeCCE-EEEEEeCCCCHHHHHHHHHHHhcc
Confidence            9997653 344568988989999999986443

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.78  E-value=5.6e-05  Score=69.04  Aligned_cols=92  Identities=11%  Similarity=0.026  Sum_probs=65.4

Q ss_pred             CCCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh-------------------------hHHHh
Q 014549          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA-------------------------THLAE  204 (423)
Q Consensus       152 ~~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~-------------------------~~l~~  204 (423)
                      .+++++|.||+ .||+.|....|.+.++.+++++. +.|..|+++.....                         ..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            46789999996 99999999999999999999865 78888988743222                         23445


Q ss_pred             hCCCCcccccc------CccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          205 RKPIGQIFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       205 ~~~~~~~~~i~------~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      .|+      +.      .+|+.+++-+....   ...+.|    .+..+++++.+...
T Consensus       148 ~yg------v~~~~~g~~~P~~~lID~~G~I---~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          148 AYG------VFDEEDGNAFRGLFIIDPNGIL---RQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HTT------CBCTTTSSBCEEEEEECTTSEE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcC------CeecCCCCccceEEEECCCCeE---EEEEecCCCCCCCHHHHHHHHHHh
Confidence            555      77      78999998544332   223333    24577777777543

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.76  E-value=4.4e-05  Score=65.57  Aligned_cols=96  Identities=11%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             CCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCC------------ccccccC--
Q 014549          153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIG------------QIFFRRG--  216 (423)
Q Consensus       153 ~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~------------~~~~i~~--  216 (423)
                      +++++|.||+ .||+.|....|.+.++.+++++. +.+..|+++........++++++.            ..|++..  
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            5589999998 99999999999999999999865 688888887332233333333321            1222555  


Q ss_pred             ----------ccEEEEeCCCCCCCCCcccccC---CCCHHHHHHHHHH
Q 014549          217 ----------LPSLVAFPPGCKSSDCMTRFEG---ELSVDAVTDWFAT  251 (423)
Q Consensus       217 ----------~Pti~~f~~g~~~~~~~~~y~G---~~~~~~l~~fi~~  251 (423)
                                .|+.+++-++...   ...|.|   ....+++++.+.+
T Consensus       115 ~~~~~~~~~~~p~~~lid~~G~i---~~~~~~~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A          115 NMYGKQVLGIERSTFLLSPEGQV---VQAWRKVKVAGHADAVLAALKA  159 (163)
T ss_dssp             EETTEEEEEECCEEEEECTTSCE---EEEECSCCSTTHHHHHHHHHHH
T ss_pred             ccccccccCcceEEEEECCCCeE---EEEEcCCCcccCHHHHHHHHHH
Confidence                      8999998554432   223433   2345666666654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.75  E-value=9.1e-05  Score=65.75  Aligned_cols=41  Identities=12%  Similarity=0.083  Sum_probs=34.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE  192 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd  192 (423)
                      +.++.++.|+++||++|+.+.|.+.++.+.+.+.+.+-.+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p   61 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH   61 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEE
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEec
Confidence            46788999999999999999999999998876655555554

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.68  E-value=6.1e-05  Score=64.57  Aligned_cols=93  Identities=6%  Similarity=0.001  Sum_probs=57.4

Q ss_pred             CcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC------------ccccccCcc--
Q 014549          154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG------------QIFFRRGLP--  218 (423)
Q Consensus       154 ~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~------------~~~~i~~~P--  218 (423)
                      .+++|.|| +.||+.|....|.+.++.++++....|..|+++........++++++.            ..|++...|  
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~  115 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  115 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence            46888887 899999999999999999998754377777776332222233332221            223377888  


Q ss_pred             -----EEEEeCCCCCCCCCcccccCCCCH---HHHHHHHHH
Q 014549          219 -----SLVAFPPGCKSSDCMTRFEGELSV---DAVTDWFAT  251 (423)
Q Consensus       219 -----ti~~f~~g~~~~~~~~~y~G~~~~---~~l~~fi~~  251 (423)
                           ++++ ++|..    ...+.|....   +.+++-+.+
T Consensus       116 g~~~~~~li-~~G~i----~~~~~g~~~~~~~~~~~~~l~~  151 (159)
T 2a4v_A          116 GSIRSHFIF-VDGKL----KFKRVKISPEVSVNDAKKEVLE  151 (159)
T ss_dssp             CBCCEEEEE-ETTEE----EEEEESCCHHHHHHHHHHHHHH
T ss_pred             CccceEEEE-cCCEE----EEEEccCCccccHHHHHHHHHH
Confidence                 5666 77754    2344564432   344444433

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.67  E-value=0.00012  Score=66.87  Aligned_cols=98  Identities=8%  Similarity=-0.001  Sum_probs=67.1

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhC-------CCC------------c
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERK-------PIG------------Q  210 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~-------~~~------------~  210 (423)
                      .+++++|.|| +.||+.|....|.+.++.++++. .+.|..|+++........++++       ++.            .
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            4578999999 99999999999999999999875 3688888887433333445544       221            2


Q ss_pred             cccc-----cCccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          211 IFFR-----RGLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i-----~~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      .|++     ...|+.+++-+....   ...+.|    .++.++|.+.+.+.
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I---~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCV---RHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBE---EEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeE---EEEEecCCCCCCCHHHHHHHHHHH
Confidence            3446     357999988654432   122223    35788888888665

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.63  E-value=0.00031  Score=55.36  Aligned_cols=95  Identities=14%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.++ ++..+.+.   +++++ |+++.+   ....+.+..++..+.+.+.|+.+...  ..+.++++|++.+.|++++|
T Consensus         9 l~~~~-~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~   82 (109)
T 3tco_A            9 LTEEN-FDEVIRNN---KLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD--ENQKIADKYSVLNIPTTLIF   82 (109)
T ss_dssp             CCTTT-HHHHHHHS---SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             ecHHH-HHHHHhcC---CeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccc--cCHHHHHhcCcccCCEEEEE
Confidence            55555 45555432   35555 444322   12346667788888777888877643  24789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ++ +.....+.|..+.+.|.+||++.
T Consensus        83 ~~-g~~~~~~~g~~~~~~l~~~l~~~  107 (109)
T 3tco_A           83 VN-GQLVDSLVGAVDEDTLESTVNKY  107 (109)
T ss_dssp             ET-TEEEEEEESCCCHHHHHHHHHHH
T ss_pred             cC-CcEEEeeeccCCHHHHHHHHHHH
Confidence            64 44445578999999999999874

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=97.63  E-value=0.00044  Score=62.85  Aligned_cols=42  Identities=10%  Similarity=-0.158  Sum_probs=36.9

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      .++++||.|||.||+.|+ -.|.++++.+++++. +.|..|+|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            367999999999999998 788999999999765 788889886

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.62  E-value=0.00029  Score=56.44  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             eEEE-EEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549          280 VKVI-FFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (423)
Q Consensus       280 ~~vl-~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~  355 (423)
                      ++++ |+++.   +....+.+..++..+.+.+.|+.+...+  ...++++|+|.+.|++++|++ +.....+.|..+.+.
T Consensus        19 ~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-G~~~~~~~G~~~~~~   95 (112)
T 2voc_A           19 VVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE--NQETAGKYGVMSIPTLLVLKD-GEVVETSVGFKPKEA   95 (112)
T ss_dssp             EEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTT--CCSHHHHTTCCSBSEEEEEET-TEEEEEEESCCCHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCC--CHHHHHHcCCCcccEEEEEeC-CEEEEEEeCCCCHHH
Confidence            5444 55542   2223566777888887677888776433  357999999999999999954 444455789999999


Q ss_pred             HHHHHHhhccc
Q 014549          356 LSEVMEQNKLQ  366 (423)
Q Consensus       356 l~~fi~~~~~~  366 (423)
                      |.+|+..+.-+
T Consensus        96 l~~~l~~~~~~  106 (112)
T 2voc_A           96 LQELVNKHLLE  106 (112)
T ss_dssp             HHHHHHTTSCS
T ss_pred             HHHHHHHHHHh
Confidence            99999885443

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=97.59  E-value=0.00019  Score=58.98  Aligned_cols=68  Identities=13%  Similarity=0.277  Sum_probs=46.9

Q ss_pred             CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..|.+..++..+.+.+.|+.+...+  ...++++|+|.++|++++|+++ .....+.|..+.+.|.+||++
T Consensus        53 ~~p~~~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~  120 (123)
T 1oaz_A           53 IAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGALSKGQLKEFLDA  120 (123)
T ss_dssp             THHHHTTC-------CEEEEEETTS--CTTTGGGGTCCBSSEEEEEESS-SEEEEEESCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCccCEEEEEECC-EEEEEEeCCCCHHHHHHHHHH
Confidence            3566666777776667777776433  3679999999999999999654 344457899899999999976

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.58  E-value=0.00054  Score=56.22  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=59.0

Q ss_pred             ceEEE-EEecCC---CCCchHHHHHHHhcc----ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC
Q 014549          279 KVKVI-FFSKTG---ERASPFVRQISRNYW----AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS  350 (423)
Q Consensus       279 ~~~vl-~f~~~~---~~~~~~~~~~a~~~~----~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~  350 (423)
                      +++++ |+++.|   ....|.+..++..+.    ..+.|+.+....  ...++++|+|.++|++++|++ +.....|.|.
T Consensus        26 ~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-g~~~~~~~G~  102 (133)
T 1x5d_A           26 DVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRGFPTIKIFQK-GESPVDYDGG  102 (133)
T ss_dssp             SEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCSSSEEEEEET-TEEEEEECSC
T ss_pred             CeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCeeCeEEEEeC-CCceEEecCC
Confidence            35444 554422   234566777777775    567777765332  367999999999999999987 4455667899


Q ss_pred             CChhHHHHHHHhhc
Q 014549          351 FNNSRLSEVMEQNK  364 (423)
Q Consensus       351 ~~~~~l~~fi~~~~  364 (423)
                      .+.+.|.+||.+..
T Consensus       103 ~~~~~l~~~l~~~~  116 (133)
T 1x5d_A          103 RTRSDIVSRALDLF  116 (133)
T ss_dssp             CSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998853

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.58  E-value=0.00035  Score=60.93  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             CCCcEEEEEecCC-CccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549          152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapw-C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~  194 (423)
                      .+++++|.||+.| |+.|+...|.+.++.++  ..+.|..|+.+
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D   84 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKD   84 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECC
Confidence            3678999999999 99999999999999988  44778888876

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.56  E-value=0.00045  Score=56.41  Aligned_cols=99  Identities=15%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.++ +++.+++    .++|.|+++.+   ....|.+..++..+.+ .+.|+.+...+  ...++++|+|.++||+++|
T Consensus        12 l~~~~-f~~~~~~----~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   84 (126)
T 1x5e_A           12 ITDEN-WRELLEG----DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE--QPGLSGRFIINALPTIYHC   84 (126)
T ss_dssp             CCTTT-HHHHTSS----EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             ecHHH-HHHHhCC----CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC--CHHHHHHcCCcccCEEEEE
Confidence            55554 3444432    26666666532   2234666667777664 57777775432  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhhccccCc
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQNKLQELP  369 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~~~~~lp  369 (423)
                      +++.  ...|.|..+.+.|.+||++.....+.
T Consensus        85 ~~G~--~~~~~G~~~~~~l~~~l~~~~~~~~~  114 (126)
T 1x5e_A           85 KDGE--FRRYQGPRTKKDFINFISDKEWKSIE  114 (126)
T ss_dssp             ETTE--EEECCSCCCHHHHHHHHHTCGGGGSC
T ss_pred             eCCe--EEEeecCCCHHHHHHHHHHHhhccCC
Confidence            6543  46788999999999999986544333

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.56  E-value=0.00032  Score=55.55  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhcc---ccceEEEEEccccccHHHHhhcCCCCCCeEE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYW---AYASFAFVLWREEESSIWWNTFEVESAPAIV  335 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~---~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~  335 (423)
                      ++.++ +++.+.+   ..++|.|+++.+   ....+.+..++..+.   ..+.++.+...  +...++++|+|.++|+++
T Consensus        10 l~~~~-~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pt~~   83 (111)
T 3uvt_A           10 LTENN-FDDTIAE---GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT--AERNICSKYSVRGYPTLL   83 (111)
T ss_dssp             CCTTT-HHHHHHS---SEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT--TCHHHHHHTTCCSSSEEE
T ss_pred             cChhh-HHHHhcC---CcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecc--ccHhHHHhcCCCcccEEE
Confidence            55555 4555542   124444555432   123455566666554   23555555432  247899999999999999


Q ss_pred             EecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          336 FLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       336 lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +|+++ .....+.|..+.+.|.+||+++
T Consensus        84 ~~~~g-~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           84 LFRGG-KKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEETT-EEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEeCC-cEEEeccCCcCHHHHHHHHHhc
Confidence            99754 3445678999999999999874

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.55  E-value=0.0005  Score=57.10  Aligned_cols=97  Identities=18%  Similarity=0.198  Sum_probs=65.1

Q ss_pred             cccchhhhhhhhhcCCCceEEEE-EecC---CCCCchHHHHHHHhcccc---ceEEEEEccccccHHHHhhcCCCCCCeE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIF-FSKT---GERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAI  334 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~-f~~~---~~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~~~~l~~~f~v~~~Ptl  334 (423)
                      ++..+ ++..+..   ++++++. +++.   |....+.+..++..+.+.   +.|+.+...  +...++++|+|.++|++
T Consensus        22 l~~~~-~~~~~~~---~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~   95 (140)
T 2dj1_A           22 LNDGN-FDNFVAD---KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT--SASMLASKFDVSGYPTI   95 (140)
T ss_dssp             CCTTT-HHHHHTT---CSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT--TCHHHHHHTTCCSSSEE
T ss_pred             cChHh-HHHHHhc---CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc--ccHHHHHHCCCCccCeE
Confidence            44444 3444432   3355554 4432   233467777777777654   666666432  23789999999999999


Q ss_pred             EEecCCCcceeEecCCCChhHHHHHHHhhccc
Q 014549          335 VFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       335 ~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~  366 (423)
                      ++|+++.  ...|.|..+.+.|.+||++..-+
T Consensus        96 ~~~~~G~--~~~~~g~~~~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           96 KILKKGQ--AVDYDGSRTQEEIVAKVREVSQP  125 (140)
T ss_dssp             EEEETTE--EEECCSCCCHHHHHHHHHHHHSS
T ss_pred             EEEECCc--EEEcCCCCCHHHHHHHHHHhcCC
Confidence            9997543  66788999999999999986443

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.54  E-value=0.00043  Score=54.35  Aligned_cols=83  Identities=18%  Similarity=0.253  Sum_probs=57.0

Q ss_pred             CceEEEEE-ecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl~f-~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++++.| ++.+   ....+.+..++..+.+.+.|+.+...+  .+.++++|++.+.|++++|++ +.....+.|..+.
T Consensus        20 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~-G~~~~~~~G~~~~   96 (107)
T 2i4a_A           20 SGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD--NPETPNAYQVRSIPTLMLVRD-GKVIDKKVGALPK   96 (107)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTT--CCHHHHHTTCCSSSEEEEEET-TEEEEEEESCCCH
T ss_pred             CCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCC--CHHHHHhcCCCccCEEEEEeC-CEEEEEecCCCCH
Confidence            34555544 4322   112455666777776667777776432  367999999999999999964 3344457898899


Q ss_pred             hHHHHHHHhh
Q 014549          354 SRLSEVMEQN  363 (423)
Q Consensus       354 ~~l~~fi~~~  363 (423)
                      +.|.+||+++
T Consensus        97 ~~l~~~l~~~  106 (107)
T 2i4a_A           97 SQLKAWVESA  106 (107)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999863

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=97.54  E-value=0.00051  Score=53.80  Aligned_cols=96  Identities=21%  Similarity=0.241  Sum_probs=61.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++.+... .++++++ |+++.+   ....+.+..++..+.+ +.|+.+...+  .+.++++|++.+.|++++|
T Consensus         5 i~~~~~~~~~l~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   80 (105)
T 3m9j_A            5 IESKTAFQEALDAA-GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD--CQDVASESEVKSMPTFQFF   80 (105)
T ss_dssp             CCSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTT--CHHHHHHTTCCBSSEEEEE
T ss_pred             cCCHHHHHHHHHhc-CCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhh--hHHHHHHcCCCcCcEEEEE
Confidence            33433355555533 2345555 444422   1234566667777754 6777775432  4789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.|. +.+.|.+||++.
T Consensus        81 ~~g-~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           81 KKG-QKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             ETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECC-eEEEEEeCC-CHHHHHHHHHHh
Confidence            654 333456788 889999999863

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=97.54  E-value=0.00019  Score=64.89  Aligned_cols=97  Identities=13%  Similarity=0.020  Sum_probs=65.9

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC-------CCC------------cc
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------PIG------------QI  211 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~-------~~~------------~~  211 (423)
                      +++++|.|| +.||+.|..-.|.+.++.++++.. +.|..|+++........++++       ++.            ..
T Consensus        48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  127 (211)
T 2pn8_A           48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD  127 (211)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHH
Confidence            578999999 999999999999999999998753 788888887433333344433       221            23


Q ss_pred             cccc------CccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          212 FFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~------~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      |++.      ..|+.+++-+....   ...+.|    .++.+++++.+...
T Consensus       128 ygv~~~~~g~~~p~~~lID~~G~I---~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          128 YGVYLEDSGHTLRGLFIIDDKGIL---RQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cCCcccCCCcccceEEEECCCCEE---EEEEecCCCCCCCHHHHHHHHHHh
Confidence            4463      58999988654432   222223    25778888887654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.53  E-value=0.0004  Score=54.78  Aligned_cols=68  Identities=15%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..+.+.+.++.+...+  .+.++++|++.+.|++++|+++ .....+.|..+.+.|.+||++.
T Consensus        39 ~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~  106 (108)
T 2trx_A           39 APILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             HHHHHHHHHHTTTTEEEEEEETTT--CTTHHHHTTCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcEEEEEECCC--CHHHHHHcCCcccCEEEEEeCC-EEEEEEecCCCHHHHHHHHHHh
Confidence            466677787877667777775432  3679999999999999999643 3444568988999999999863

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.53  E-value=0.00034  Score=56.71  Aligned_cols=68  Identities=13%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++.++.+.+.|+.+...+  ...++++|+|.+.|++++|+++ .....+.|..+.+.|.+||++.
T Consensus        50 ~~~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~  117 (119)
T 1w4v_A           50 GPRLEKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSAVPTVLAMKNG-DVVDKFVGIKDEDQLEAFLKKL  117 (119)
T ss_dssp             HHHHHHHHHHTTTSSEEEEEETTT--THHHHHHTTCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCcccEEEEEeCC-cEEEEEcCCCCHHHHHHHHHHH
Confidence            455666777776677777776432  3679999999999999999643 3344568888999999999763

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=97.53  E-value=0.00054  Score=55.35  Aligned_cols=91  Identities=23%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             hhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce
Q 014549          268 GKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP  344 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~  344 (423)
                      +++.+.......++|.|+++.+   ....|.+..++..|.+ +.|+.+...+  ...++++|+|.+.|++++|+++ ...
T Consensus        22 f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G-~~~   97 (116)
T 3qfa_C           22 FQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDD--CQDVASECEVKSMPTFQFFKKG-QKV   97 (116)
T ss_dssp             HHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTT--THHHHHHTTCCSSSEEEEESSS-SEE
T ss_pred             HHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC--CHHHHHHcCCccccEEEEEeCC-eEE
Confidence            5555653222224444555432   2234666777777765 7777775432  4789999999999999999654 334


Q ss_pred             eEecCCCChhHHHHHHHhh
Q 014549          345 VVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       345 ~~y~g~~~~~~l~~fi~~~  363 (423)
                      ..+.|. +.+.|.++|++.
T Consensus        98 ~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           98 GEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEESC-CHHHHHHHHHHH
T ss_pred             EEEcCC-CHHHHHHHHHHh
Confidence            456788 889999999863

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.52  E-value=0.00033  Score=55.54  Aligned_cols=81  Identities=19%  Similarity=0.363  Sum_probs=58.5

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.+   ....+.+..++..+.+.+.|+.+...+  .+.++++|+|.+.|++++|+++ .....+.|..+.+.|
T Consensus        25 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~g-~~~~~~~g~~~~~~l  101 (111)
T 3gnj_A           25 CLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE--EKTLFQRFSLKGVPQILYFKDG-EYKGKMAGDVEDDEV  101 (111)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSCEEEEEETT-EEEEEEESSCCHHHH
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc--ChhHHHhcCCCcCCEEEEEECC-EEEEEEeccCCHHHH
Confidence            4444555432   223466677888887778888886433  4689999999999999999754 344467899999999


Q ss_pred             HHHHHhh
Q 014549          357 SEVMEQN  363 (423)
Q Consensus       357 ~~fi~~~  363 (423)
                      .+||++.
T Consensus       102 ~~~l~~~  108 (111)
T 3gnj_A          102 EQMIADV  108 (111)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.51  E-value=0.0004  Score=54.46  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..+.+.+.|+.+...+  .+.++++|++.+.|++++|+++ .....+.|..+.+.|.+||++.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           38 APVLEELAADYEGKADILKLDVDE--NPSTAAKYEVMSIPTLIVFKDG-QPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             HHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSBSEEEEEETT-EEEEEEESCCCHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcccCEEEEEeCC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            466677888887777887776432  4789999999999999999743 3444678998999999999863

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=97.51  E-value=0.00027  Score=62.46  Aligned_cols=97  Identities=9%  Similarity=-0.053  Sum_probs=66.6

Q ss_pred             CCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC----CCC------------ccccc
Q 014549          153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK----PIG------------QIFFR  214 (423)
Q Consensus       153 ~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~----~~~------------~~~~i  214 (423)
                      +++++|.||+ .||+.|....|.+.++.++++.. +.|..|+++........++++    ++.            ..|++
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv  109 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence            5789999995 99999999999999999988753 688888877443334455555    332            23445


Q ss_pred             c------CccEEEEeCCCCCCCCCcccccCC----CCHHHHHHHHHHh
Q 014549          215 R------GLPSLVAFPPGCKSSDCMTRFEGE----LSVDAVTDWFATA  252 (423)
Q Consensus       215 ~------~~Pti~~f~~g~~~~~~~~~y~G~----~~~~~l~~fi~~~  252 (423)
                      .      ..|+.+++-+....   ...+.|.    ++.++|.+.+.+.
T Consensus       110 ~~~~~g~~~p~~~lID~~G~i---~~~~~~~~~~~~~~~~l~~~l~~l  154 (186)
T 1n8j_A          110 MREDEGLADRATFVVDPQGII---QAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             ccCCCCceeeEEEEECCCCeE---EEEEecCCCCCCCHHHHHHHHHHH
Confidence            5      25999888654432   2233343    3688888888655

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.51  E-value=0.0005  Score=61.86  Aligned_cols=90  Identities=17%  Similarity=0.200  Sum_probs=64.2

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.|   ....|.+..++..+.+.+.|+.|...+  ...++++|+|.++||+++|+++ .....+.|..+.+.|
T Consensus       117 vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l  193 (210)
T 3apq_A          117 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD--DRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESL  193 (210)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEECTT-SCCEECCSCCCHHHH
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCc--cHHHHHHcCCCcCCeEEEEECC-CceeEecCCCCHHHH
Confidence            4555655432   223566777888887778888776432  3679999999999999999654 445567899999999


Q ss_pred             HHHHHhhccccCcccc
Q 014549          357 SEVMEQNKLQELPQLR  372 (423)
Q Consensus       357 ~~fi~~~~~~~lp~l~  372 (423)
                      .+||.+..-..+.+++
T Consensus       194 ~~~i~~~l~~~~~~i~  209 (210)
T 3apq_A          194 VAFAMQHVRSTVTELS  209 (210)
T ss_dssp             HHHHHHHHHCCSSCC-
T ss_pred             HHHHHHhCcccceecC
Confidence            9999986555454443

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.50  E-value=0.00052  Score=54.62  Aligned_cols=82  Identities=13%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             ceEEE-EEecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549          279 KVKVI-FFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (423)
Q Consensus       279 ~~~vl-~f~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~  354 (423)
                      +++++ |+++.+ .|  ..+.+..++..+.+.+.|+.+...+  ...++++|+|.+.|++++|++ +.....+.|..+.+
T Consensus        26 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~-G~~~~~~~g~~~~~  102 (115)
T 1thx_A           26 QPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRLVKG-EQILDSTEGVISKD  102 (115)
T ss_dssp             SCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEEEET-TEEEEEEESCCCHH
T ss_pred             ceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCceeEEEEEcC-CEEEEEecCCCCHH
Confidence            35444 554422 22  3456677788887667888776432  367999999999999999964 33444568988999


Q ss_pred             HHHHHHHhh
Q 014549          355 RLSEVMEQN  363 (423)
Q Consensus       355 ~l~~fi~~~  363 (423)
                      .|.+||++.
T Consensus       103 ~l~~~l~~~  111 (115)
T 1thx_A          103 KLLSFLDTH  111 (115)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.50  E-value=4.2e-05  Score=62.21  Aligned_cols=66  Identities=6%  Similarity=0.109  Sum_probs=46.9

Q ss_pred             cccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccce---EEEEEcccch----hhhHHHhhCCCCccccccCcc
Q 014549          146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIAN---TGMVELGDIR----LATHLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       146 f~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~---~~~Vdc~~~~----~~~~l~~~~~~~~~~~i~~~P  218 (423)
                      +++.+.+.  .++.|++|||++|+++.+.+++.+      +.   +..+|+++++    ....+.+.+|      +.++|
T Consensus        12 ~~~~i~~~--~vv~f~~~~Cp~C~~~~~~L~~~~------~~~~~~~~vdi~~~~~~~~~~~~l~~~~g------~~~vP   77 (114)
T 2hze_A           12 VQQRLANN--KVTIFVKYTCPFCRNALDILNKFS------FKRGAYEIVDIKEFKPENELRDYFEQITG------GKTVP   77 (114)
T ss_dssp             HHTTCCTT--CEEEEECTTCHHHHHHHHHHTTSC------BCTTSEEEEEGGGSSSHHHHHHHHHHHHS------CCSSC
T ss_pred             HHHHhccC--CEEEEEeCCChhHHHHHHHHHHcC------CCcCceEEEEccCCCChHHHHHHHHHHhC------CCCcC
Confidence            33445443  467799999999999998876543      34   8889998553    1246888888      88999


Q ss_pred             EEEEeCCCC
Q 014549          219 SLVAFPPGC  227 (423)
Q Consensus       219 ti~~f~~g~  227 (423)
                      ++++  +|+
T Consensus        78 ~v~i--~g~   84 (114)
T 2hze_A           78 RIFF--GKT   84 (114)
T ss_dssp             EEEE--TTE
T ss_pred             EEEE--CCE
Confidence            9743  553

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.50  E-value=0.00056  Score=54.73  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=64.5

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecC---CCCCchHHHHHHHhccc---cceEEEEEccccccHHHHhhcCCCCCCeE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAI  334 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~---~~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl  334 (423)
                      ++.++ ++..+.+.   +++++ |+++.   +....+.+..++..+..   .+.|+.+...+  ...++++|++.+.|++
T Consensus        12 l~~~~-~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~   85 (120)
T 1mek_A           12 LRKSN-FAEALAAH---KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             CCTTT-HHHHHHHC---SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSSEE
T ss_pred             echhh-HHHHHccC---CeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC--CHHHHHHCCCCcccEE
Confidence            55554 34444432   35444 55432   33456777777777653   46666665332  3578999999999999


Q ss_pred             EEecCCCc-ceeEecCCCChhHHHHHHHhhc
Q 014549          335 VFLKDPGV-KPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       335 ~lfk~~~~-~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      ++|+++.. .+..|.|..+.+.|.+||+++.
T Consensus        86 ~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           86 KFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             EEEeCCCcCCcccccCccCHHHHHHHHHhcc
Confidence            99976554 2467789999999999998743

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.50  E-value=9.1e-05  Score=57.09  Aligned_cols=56  Identities=11%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhC-CCCccccccCccEEEEeCCC
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERK-PIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~-~~~~~~~i~~~Pti~~f~~g  226 (423)
                      -++.|+++||++|+++.+.+++..      +.+..+|.+ .....++.+.+ +      +.++|++.+  +|
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~-~~~~~~l~~~~~~------~~~vP~l~~--~g   63 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDAS-TSLRQEMVQRANG------RNTFPQIFI--GD   63 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSC-HHHHHHHHHHHHS------SCCSCEEEE--TT
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECC-HHHHHHHHHHhCC------CCCcCEEEE--CC
Confidence            367899999999999998887652      567778877 33345677877 8      889999843  55

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.47  E-value=0.001  Score=62.58  Aligned_cols=102  Identities=11%  Similarity=0.182  Sum_probs=70.6

Q ss_pred             eeecccchhhhhhhhhcCCCceEEEEEec-C--CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEE
Q 014549          259 IFYYTKESMGKNFLAKTGPHKVKVIFFSK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV  335 (423)
Q Consensus       259 ~~~it~~~~~~~fl~~~~~~~~~vl~f~~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~  335 (423)
                      ...+|.++ +++.+.......++|.|+.+ +  |....|.+..++.++.+.+.|+.|...+  .+.++++|+|.++||++
T Consensus         9 v~~~~~~~-f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~   85 (287)
T 3qou_A            9 IVNINESN-LQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRAIPTVY   85 (287)
T ss_dssp             EEECCTTT-HHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCSSSEEE
T ss_pred             cEECCHHH-HHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCCCCeEE
Confidence            33366665 45555432222345556554 2  3446788888998888778888876432  37899999999999999


Q ss_pred             EecCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          336 FLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       336 lfk~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      +|+++ .....+.|..+.+.+.+|+....
T Consensus        86 ~~~~G-~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           86 LFQNG-QPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEECC-EEEEEeeCCCCHHHHHHHHHHHc
Confidence            99754 33345789889899999998853

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=97.46  E-value=0.00086  Score=60.50  Aligned_cols=42  Identities=10%  Similarity=-0.189  Sum_probs=36.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      .++++||.|||.||+.| .-.|.+.++.+++++. +.|..|+|+
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            36799999999999999 6788999999999765 688888875

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.44  E-value=0.00042  Score=59.07  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             eeeEeccCCcccccCCCCcEEEE-EecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIFHDSKPWLIQ-VYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v~~~~~~lV~-FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      -|.++|.+|...+..+.-+..+. |..+.-..-..+.+.++++|+.++|.+.|+.||.++. ....+.+.+|      ++
T Consensus        15 LV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~-~~~~~l~~fG------l~   87 (147)
T 3bj5_A           15 LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHT-DNQRILEFFG------LK   87 (147)
T ss_dssp             CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCG-GGHHHHHHTT------CC
T ss_pred             eeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchH-hHHHHHHHcC------CC
Confidence            47899999988887766665544 4433344455688999999999999999999998422 3345788899      55


Q ss_pred             --CccEEEEeCC-CCCCCCCccccc-CCCCHHHHHHHHHHhh
Q 014549          216 --GLPSLVAFPP-GCKSSDCMTRFE-GELSVDAVTDWFATAI  253 (423)
Q Consensus       216 --~~Pti~~f~~-g~~~~~~~~~y~-G~~~~~~l~~fi~~~~  253 (423)
                        ..|++.++.. +...   ...+. |..+.+.|.+|+.+..
T Consensus        88 ~~~~P~v~i~~~~~~~~---Ky~~~~~~~t~~~i~~Fv~d~l  126 (147)
T 3bj5_A           88 KEECPAVRLITLEEEMT---KYKPESEELTAERITEFCHRFL  126 (147)
T ss_dssp             GGGCSEEEEEECSSSCE---EECCSCCCCCHHHHHHHHHHHH
T ss_pred             cccCCEEEEEecccccc---cCCCCcccCCHHHHHHHHHHHH
Confidence              4899999864 2111   11233 7889999999999873

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=97.44  E-value=0.00046  Score=56.94  Aligned_cols=83  Identities=14%  Similarity=0.312  Sum_probs=58.3

Q ss_pred             CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++++ |+++.+   ....+.+..++..+.+.+.|+.+...+  ...++++|+|.+.|++++|++ +.....+.|..+.
T Consensus        40 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-G~~~~~~~G~~~~  116 (128)
T 2o8v_B           40 DGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKN-GEVAATKVGALSK  116 (128)
T ss_dssp             SSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTT--CCTTSGGGTCCSSSEEEEEET-TEEEEEEESCCCH
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCccCEEEEEeC-CEEEEEEcCCCCH
Confidence            345555 444422   224566777888887667777776433  357999999999999999954 3444457898899


Q ss_pred             hHHHHHHHhh
Q 014549          354 SRLSEVMEQN  363 (423)
Q Consensus       354 ~~l~~fi~~~  363 (423)
                      +.|.+||++.
T Consensus       117 ~~l~~~l~~~  126 (128)
T 2o8v_B          117 GQLKEFLDAN  126 (128)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999863

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=97.43  E-value=0.0002  Score=58.09  Aligned_cols=81  Identities=7%  Similarity=0.031  Sum_probs=56.1

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC----CC
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS----FN  352 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~----~~  352 (423)
                      ++|.|+++.+   ....+.+..++..+.+.+.|+.+...+  ...++++|+|.++|++++|++++. ...+.|.    .+
T Consensus        24 ~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~~~~-~~~~~g~~~~~~~  100 (122)
T 3aps_A           24 WVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQA--YPQTCQKAGIKAYPSVKLYQYERA-KKSIWEEQINSRD  100 (122)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEEEEGG-GTEEEEEEECCSC
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcC--CHHHHHHcCCCccceEEEEeCCCc-cceeeccccCcCC
Confidence            4444555422   123466677787877677777776433  367999999999999999976554 3334554    78


Q ss_pred             hhHHHHHHHhh
Q 014549          353 NSRLSEVMEQN  363 (423)
Q Consensus       353 ~~~l~~fi~~~  363 (423)
                      .+.|.+||++.
T Consensus       101 ~~~l~~~l~~~  111 (122)
T 3aps_A          101 AKTIAALIYGK  111 (122)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            89999999874

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.42  E-value=9.9e-05  Score=61.55  Aligned_cols=67  Identities=15%  Similarity=0.228  Sum_probs=46.1

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc---hh-hhHHHhhCCCCccccccCccEE
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RL-ATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~---~~-~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      .+++++....  ++.|+++||++|+++.+.++++.      +.+..+|.+.+   +. ...+++.++      +.++|+|
T Consensus        19 ~~~~~i~~~~--vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g------~~~vP~l   84 (130)
T 2cq9_A           19 QIQETISDNC--VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTG------ERTVPRI   84 (130)
T ss_dssp             HHHHHHHHSS--EEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHS------SCCSSEE
T ss_pred             HHHHHHcCCc--EEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhC------CCCcCEE
Confidence            3445554443  34499999999999999888753      45667888744   11 124778888      8899998


Q ss_pred             EEeCCCC
Q 014549          221 VAFPPGC  227 (423)
Q Consensus       221 ~~f~~g~  227 (423)
                      +  .+|.
T Consensus        85 ~--i~G~   89 (130)
T 2cq9_A           85 F--VNGT   89 (130)
T ss_dssp             E--ETTE
T ss_pred             E--ECCE
Confidence            4  3553

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.42  E-value=0.00043  Score=59.44  Aligned_cols=99  Identities=8%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++.+.+ ..++++|+ |+++.+   ....|.+..+|.+|.+.+.|+.|.+.+  .++++++|+|.+.||+++|
T Consensus        26 l~t~~~f~~~v~~-~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           26 LNSGWAVDQAIVN-EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CCSHHHHHHHHHH-CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEEEEEE
T ss_pred             cCCHHHHHHHHHh-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCEEEEE
Confidence            4443334444432 12345555 555432   234688888999998888888887654  3689999999999999999


Q ss_pred             cCCCccee--------EecCCCC-hhHHHHHHHhh
Q 014549          338 KDPGVKPV--------VYYGSFN-NSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~--------~y~g~~~-~~~l~~fi~~~  363 (423)
                      +++....+        ...|..+ .+.|.++|+.+
T Consensus       103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~  137 (160)
T 2av4_A          103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI  137 (160)
T ss_dssp             ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred             ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence            87654321        2467766 88899999875

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.42  E-value=0.00083  Score=52.56  Aligned_cols=96  Identities=25%  Similarity=0.291  Sum_probs=61.0

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++.+... .+++.++ |+++.+   ....+.+..++..+...+.++.+...+  ...++++|++.+.|++++|
T Consensus         5 l~~~~~~~~~l~~~-~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            5 VKDKADLDGQLTKA-SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             CCSHHHHHHHHHHH-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             cCCHHHHHHHHHhc-CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccc--hHHHHHHcCCCcccEEEEE
Confidence            44523345555432 2335555 444322   113455666777776667777775432  4679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +++ .....+.| .+.+.|.+||++
T Consensus        82 ~~G-~~~~~~~g-~~~~~l~~~i~~  104 (106)
T 1xwb_A           82 KNG-VKVEEFAG-ANAKRLEDVIKA  104 (106)
T ss_dssp             ETT-EEEEEEES-CCHHHHHHHHHH
T ss_pred             cCC-cEEEEEcC-CCHHHHHHHHHH
Confidence            754 33345678 688889999976

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.41  E-value=0.00072  Score=53.05  Aligned_cols=95  Identities=17%  Similarity=0.250  Sum_probs=62.8

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.+++ +..++..   +++++ |+++.+   ....+.+..++..+.+.+.++.+...+  ...++++|++.+.|++++|
T Consensus         6 l~~~~~-~~~~~~~---~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            6 VTDQNF-DETLGQH---PLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMSIPTVILF   79 (109)
T ss_dssp             CCTTTH-HHHHHHC---SEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             ccHhHH-HHHhcCC---CeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC--CHhHHHhCCCCcCCEEEEE
Confidence            455553 3444432   35555 444322   112456667777877667777776432  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.|..+.+.|.+||++.
T Consensus        80 ~~g-~~~~~~~g~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           80 KDG-QPVEVLVGAQPKRNYQAKIEKH  104 (109)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHTT
T ss_pred             eCC-cEeeeEeCCCCHHHHHHHHHHH
Confidence            644 3334578988999999999874

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.40  E-value=0.00057  Score=56.92  Aligned_cols=83  Identities=19%  Similarity=0.332  Sum_probs=59.9

Q ss_pred             CceEEE-EEecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVI-FFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl-~f~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++++ |+++.| .|  ..|.+..++..|.+.+.|+.+....  ...++++|+|.++|++++|..++. ...+.|..+.
T Consensus        51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~~g~-~~~~~G~~~~  127 (141)
T 3hxs_A           51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK--EPELARDFGIQSIPTIWFVPMKGE-PQVNMGALSK  127 (141)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEECSSSC-CEEEESCCCH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCC--CHHHHHHcCCCCcCEEEEEeCCCC-EEEEeCCCCH
Confidence            345444 555422 22  3566777888887777777776432  368999999999999999965443 3477899999


Q ss_pred             hHHHHHHHhh
Q 014549          354 SRLSEVMEQN  363 (423)
Q Consensus       354 ~~l~~fi~~~  363 (423)
                      +.|.+||+..
T Consensus       128 ~~l~~~l~~~  137 (141)
T 3hxs_A          128 EQLKGYIDKV  137 (141)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.39  E-value=0.00076  Score=52.82  Aligned_cols=67  Identities=13%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+..++..+.+.+.++.+...+  ...++++|++.+.|++++|+++ .....+.|..+.+.|.+||++
T Consensus        36 ~~~l~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~  102 (105)
T 1nsw_A           36 APVLEEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILFKGG-RPVKQLIGYQPKEQLEAQLAD  102 (105)
T ss_dssp             HHHHHHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCCcEEEEEECcC--CHHHHHHcCCccccEEEEEeCC-eEEEEEecCCCHHHHHHHHHH
Confidence            456667777877667777776432  3679999999999999999643 444456898888899999876

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.38  E-value=0.0004  Score=58.14  Aligned_cols=96  Identities=15%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++++++....+.   .++++++ |+++.+   ....+.+..++..+.+.+.|+.+...+  ...++++|+|.++||+++|
T Consensus        11 l~~~~f~~~~~~---~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~   85 (140)
T 3hz4_A           11 FEDMTWSQQVED---SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQGTPTFKFF   85 (140)
T ss_dssp             ECHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCEESEEEEE
T ss_pred             cchHhHHHHHHh---CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCc--CHhHHHHCCCCcCCEEEEE
Confidence            555443323332   2334444 555432   223466777888887778888876433  3789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.|..+.+.|.+||++.
T Consensus        86 ~~G-~~~~~~~G~~~~~~l~~~l~~~  110 (140)
T 3hz4_A           86 CHG-RPVWEQVGQIYPSILKNAVRDM  110 (140)
T ss_dssp             ETT-EEEEEEESSCCHHHHHHHHHHH
T ss_pred             eCC-cEEEEEcCCCCHHHHHHHHHHH
Confidence            754 3444678999999999999874

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.38  E-value=0.00087  Score=52.01  Aligned_cols=67  Identities=16%  Similarity=0.263  Sum_probs=50.4

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..+.+ +.++.+...+  ...++++|++.+.|++++|+++ .....+.|..+.+.|.+||++.
T Consensus        35 ~~~~~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~~~~~~l~~~l~~~  101 (104)
T 2e0q_A           35 APIIEELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMSLPTVIFFKDG-EPVDEIIGAVPREEIEIRIKNL  101 (104)
T ss_dssp             HHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSCEEEEEETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCC-ceEEEEECCC--CHHHHHhCCccccCEEEEEECC-eEhhhccCCCCHHHHHHHHHHH
Confidence            4556667777765 7777775432  3679999999999999999644 3344578988999999999873

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=97.37  E-value=0.00085  Score=56.50  Aligned_cols=95  Identities=15%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.++ ++..+.   .++++++ |+++.+   ....+.+..++..+.+.+.|+.+...+  ...++++|+|.++|++++|
T Consensus        43 l~~~~-~~~~~~---~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~  116 (148)
T 3p2a_A           43 ATAET-LDKLLQ---DDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA--EPALSTRFRIRSIPTIMLY  116 (148)
T ss_dssp             CCTTT-HHHHTT---CSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             cCHHH-HHHHHh---cCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcC--CHHHHHHCCCCccCEEEEE
Confidence            44444 444442   2334444 555432   223566777888887777777775432  4789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....|.|..+.+.|.+||++.
T Consensus       117 ~~G-~~~~~~~G~~~~~~l~~~l~~~  141 (148)
T 3p2a_A          117 RNG-KMIDMLNGAVPKAPFDNWLDEQ  141 (148)
T ss_dssp             ETT-EEEEEESSCCCHHHHHHHHHHH
T ss_pred             ECC-eEEEEEeCCCCHHHHHHHHHHH
Confidence            743 4444678999999999999874

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=97.37  E-value=0.0016  Score=51.29  Aligned_cols=96  Identities=20%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++.+... .++++++ |+++.+   ....|.+..++..+ +.+.|+.+...+  ...++++|++.+.||+++|
T Consensus         6 i~~~~~~~~~~~~~-~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            6 VGSDPDFQPELSGA-GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQ--CQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             ECSGGGHHHHHHHT-TTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEEEE
T ss_pred             ecCHHHHHHHHHhC-CCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECcc--CHHHHHhcCCCcccEEEEE
Confidence            44433355555432 2334444 554422   22346667777777 457777776433  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.|. +.+.|.+||++.
T Consensus        82 ~~G-~~~~~~~G~-~~~~l~~~l~~~  105 (107)
T 1gh2_A           82 RNK-VRIDQYQGA-DAVGLEEKIKQH  105 (107)
T ss_dssp             ETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECC-eEEEEEeCC-CHHHHHHHHHHh
Confidence            754 333456774 445699998763

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.36  E-value=0.00062  Score=54.10  Aligned_cols=68  Identities=13%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..+.+.+.++.+...+  ...++++|++.+.|++++|+++ .....+.|..+.+.|.+||++.
T Consensus        42 ~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~  109 (112)
T 1t00_A           42 APSLEAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMSIPTLNVYQGG-EVAKTIVGAKPKAAIVRDLEDF  109 (112)
T ss_dssp             HHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHTHHH
T ss_pred             CHHHHHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCcccEEEEEeCC-EEEEEEeCCCCHHHHHHHHHHH
Confidence            456677787876667777776432  4679999999999999999754 3334568988889999998763

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=97.36  E-value=0.0003  Score=55.58  Aligned_cols=82  Identities=10%  Similarity=0.125  Sum_probs=48.6

Q ss_pred             CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++++ |+++.+   ....|.+..++..+ +.+.|+.+....  .+.++++|+|.+.||+++|+++ .....+.|..+.
T Consensus        18 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~g~~~~   93 (105)
T 4euy_A           18 QQLVLLFIKTENCGVCDVMLRKVNYVLENY-NYVEKIEILLQD--MQEIAGRYAVFTGPTVLLFYNG-KEILRESRFISL   93 (105)
T ss_dssp             SSEEEEEEEESSCHHHHHHHHHHHHHHHTC-TTEEEEEEEECC--C---------CCCCEEEEEETT-EEEEEEESSCCH
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHHHHHc-CCceEEEEECCC--CHHHHHhcCCCCCCEEEEEeCC-eEEEEEeCCcCH
Confidence            345555 444432   22356667778777 456777765432  3679999999999999999744 344456898899


Q ss_pred             hHHHHHHHhh
Q 014549          354 SRLSEVMEQN  363 (423)
Q Consensus       354 ~~l~~fi~~~  363 (423)
                      +.|.++|++.
T Consensus        94 ~~l~~~l~~~  103 (105)
T 4euy_A           94 ENLERTIQLF  103 (105)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999863

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=97.35  E-value=0.0015  Score=50.86  Aligned_cols=96  Identities=19%  Similarity=0.292  Sum_probs=59.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++.+... .++++++ |+++.+   ....+.+..++..+. .+.|+.+...+  .+.++++|++.+.|++++|
T Consensus         4 i~~~~~~~~~l~~~-~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   79 (104)
T 2vim_A            4 LATAADLEKLINEN-KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQ--NEEAAAKYSVTAMPTFVFI   79 (104)
T ss_dssp             CCSHHHHHHHHHTT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             cCCHHHHHHHHHhc-CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccC--CHHHHHHcCCccccEEEEE
Confidence            34423345555432 2345555 554422   112455666777764 57777775432  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.| .+.+.|.+||++.
T Consensus        80 ~~g-~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           80 KDG-KEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             ETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred             eCC-cEEEEEeC-CCHHHHHHHHHhh
Confidence            744 33344577 6888999999863

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.34  E-value=0.00054  Score=56.26  Aligned_cols=83  Identities=19%  Similarity=0.215  Sum_probs=58.7

Q ss_pred             CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++++ |+++.+   ....+.+..++..+.+.+.++.+....  ...++++|+|.+.|++++|++ +.....+.|..+.
T Consensus        42 ~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~-G~~~~~~~G~~~~  118 (128)
T 3ul3_B           42 NTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK--NESLARKFSVKSLPTIILLKN-KTMLARKDHFVSS  118 (128)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGG--CHHHHHHTTCCSSSEEEEEET-TEEEEEESSCCCH
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCCcCEEEEEEC-CEEEEEecCCCCH
Confidence            445555 444422   223566677787877667777775432  368999999999999999964 4444567899999


Q ss_pred             hHHHHHHHhh
Q 014549          354 SRLSEVMEQN  363 (423)
Q Consensus       354 ~~l~~fi~~~  363 (423)
                      +.|.+||+++
T Consensus       119 ~~l~~~l~~~  128 (128)
T 3ul3_B          119 NDLIALIKKH  128 (128)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhC
Confidence            9999999763

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.33  E-value=0.00054  Score=55.25  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+..++..+.+.+.|+.+...+  ...++++|+|.+.|++++|+++ .....+.|..+.+.|.+||++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~G~~~~~~l~~~l~~  115 (121)
T 2i1u_A           49 APVLEEIATERATDLTVAKLDVDT--NPETARNFQVVSIPTLILFKDG-QPVKRIVGAKGKAALLRELSD  115 (121)
T ss_dssp             HHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHTCS
T ss_pred             HHHHHHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCcCCEEEEEECC-EEEEEecCCCCHHHHHHHHHH
Confidence            466677787876667777776432  4679999999999999999743 334457898888999999876

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=97.33  E-value=0.0011  Score=52.59  Aligned_cols=67  Identities=18%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..+.+.+.|+.+...+  ...++++|+|.+.|++++|+++ .....+.|. +.+.|.+||++.
T Consensus        43 ~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~  109 (112)
T 1ep7_A           43 APLFETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHVYKDG-VKADDLVGA-SQDKLKALVAKH  109 (112)
T ss_dssp             HHHHHHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEEEETT-EEEEEEESC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCcccEEEEEECC-eEEEEEcCC-CHHHHHHHHHHH
Confidence            466677777776667777775432  3679999999999999999754 333456787 888999999874

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.32  E-value=0.0012  Score=54.74  Aligned_cols=84  Identities=17%  Similarity=0.324  Sum_probs=58.9

Q ss_pred             ceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549          279 KVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS  354 (423)
Q Consensus       279 ~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~  354 (423)
                      +++++ |+++.|   ....+.+..++..+.+.+.|+.+....  ...++++|+|.+.|++++|..++. .+.+.|..+.+
T Consensus        39 k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~~G~-~~~~~G~~~~~  115 (136)
T 2l5l_A           39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK--EQELAGAFGIRSIPSILFIPMEGK-PEMAQGAMPKA  115 (136)
T ss_dssp             SCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSCEEEEECSSSC-CEEEESCCCHH
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCC--CHHHHHHcCCCCCCEEEEECCCCc-EEEEeCCCCHH
Confidence            44444 555432   123466677888887677777776432  367999999999999999943333 34678999999


Q ss_pred             HHHHHHHhhcc
Q 014549          355 RLSEVMEQNKL  365 (423)
Q Consensus       355 ~l~~fi~~~~~  365 (423)
                      .|.+||++..-
T Consensus       116 ~l~~~l~~~~~  126 (136)
T 2l5l_A          116 SFKKAIDEFLL  126 (136)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999998543

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=97.32  E-value=0.00097  Score=53.70  Aligned_cols=93  Identities=19%  Similarity=0.182  Sum_probs=61.3

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.++..++..   +++++ |+++.+   ....+.+..++.++.+ +.|+.+...+  ...++++|+|.+.|++++|
T Consensus        17 ~~~~~~~~~~~~~~---k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~   90 (114)
T 2oe3_A           17 LTNLTEFRNLIKQN---DKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDE--SPDIAKECEVTAMPTFVLG   90 (114)
T ss_dssp             CCSHHHHHHHHHHC---SEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSBSEEEEE
T ss_pred             cCCHHHHHHHHhCC---CEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCC--CHHHHHHCCCCcccEEEEE
Confidence            55555555555432   35555 444322   2235667777777765 7777775432  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +++ .....+.|.. .+.|.+||++
T Consensus        91 ~~G-~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           91 KDG-QLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             ETT-EEEEEEESSC-HHHHHHHHHT
T ss_pred             eCC-eEEEEEeCCC-HHHHHHHHHh
Confidence            754 3334567877 8889999875

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.31  E-value=0.00042  Score=61.22  Aligned_cols=42  Identities=12%  Similarity=0.152  Sum_probs=34.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc  193 (423)
                      ..++.++.|+++||++|..+.|.+.++.+.+.+.+.+..+..
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            356789999999999999999999999888766666655543

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.31  E-value=0.00054  Score=59.56  Aligned_cols=41  Identities=10%  Similarity=0.071  Sum_probs=33.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHh--hccceEEEEE
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVE  192 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l--~~~~~~~~Vd  192 (423)
                      +.++.++.|+.+||++|+.+.|...++.+++  .+.+++...+
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~   68 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   68 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEe
Confidence            4567899999999999999999999988887  5666555544

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=97.31  E-value=0.00075  Score=57.76  Aligned_cols=81  Identities=11%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.+   ....|.+..++..|.+.+.|+.++..+  .+.++++|+|.++|++++|+++ .....+.|..+.+.|
T Consensus        67 vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~G-~~~~~~~G~~~~~~l  143 (155)
T 2ppt_A           67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA--HPAVAGRHRIQGIPAFILFHKG-RELARAAGARPASEL  143 (155)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--STHHHHHTTCCSSSEEEEEETT-EEEEEEESCCCHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCc--cHHHHHHcCCCcCCEEEEEeCC-eEEEEecCCCCHHHH
Confidence            4555555432   223566777888887778888886433  3679999999999999999643 344457898899999


Q ss_pred             HHHHHhh
Q 014549          357 SEVMEQN  363 (423)
Q Consensus       357 ~~fi~~~  363 (423)
                      .+||++.
T Consensus       144 ~~~l~~~  150 (155)
T 2ppt_A          144 VGFVRGK  150 (155)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=97.31  E-value=0.00037  Score=61.11  Aligned_cols=55  Identities=11%  Similarity=0.100  Sum_probs=42.0

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      +++++|.|| +.||+.|..-.|.+.++.++++.. +.|..|.++........+++++
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~  107 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQG  107 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHT
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcC
Confidence            457888887 999999999999999999999765 6788888874433344444444

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.30  E-value=0.00089  Score=52.62  Aligned_cols=67  Identities=19%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+..++..+.+.+.++.+...+  .+.++++|++.+.|++++|+++ .....+.|..+.+.|.++|++
T Consensus        38 ~~~l~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~  104 (107)
T 1dby_A           38 APVVDEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVFKGG-KKCETIIGAVPKATIVQTVEK  104 (107)
T ss_dssp             HHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEESSS-SEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCceEEEEEECCC--CHHHHHHCCCCcCCEEEEEeCC-EEEEEEeCCCCHHHHHHHHHH
Confidence            456667777777667777775432  4679999999999999999644 333456898888999999986

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.30  E-value=0.0011  Score=57.50  Aligned_cols=97  Identities=9%  Similarity=-0.059  Sum_probs=65.7

Q ss_pred             CCcEEEEEecCCCc-cccccHHHHHHHHHHhhc---cceEEEEEccc-c---------------------------hhhh
Q 014549          153 SKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEG---IANTGMVELGD-I---------------------------RLAT  200 (423)
Q Consensus       153 ~~~~lV~FYapwC~-~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~-~---------------------------~~~~  200 (423)
                      +++++|.||+.||+ .|....|.+.++.+++..   .+.+..|.++. +                           ....
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            68999999999997 599999999999999852   36777777651 0                           1123


Q ss_pred             HHHhhCCCCc---cccccCccEEEEeCCCCCCCCCcccccC-CCCHHHHHHHHHHh
Q 014549          201 HLAERKPIGQ---IFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA  252 (423)
Q Consensus       201 ~l~~~~~~~~---~~~i~~~Pti~~f~~g~~~~~~~~~y~G-~~~~~~l~~fi~~~  252 (423)
                      .+++.+|+..   ...+...|++.++-+....   ...|.| ..+.++|.+.+.+.
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i---~~~~~g~~~~~~~i~~~l~~~  160 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQI---KDYIYGVNYNYLEFVNALRLA  160 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSBE---EEEEESSSCCHHHHHHHHHHH
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCeE---EEEEeCCCCCHHHHHHHHHHh
Confidence            4555544321   1224566888888654442   234567 46789999988776

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.29  E-value=0.00016  Score=61.68  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc---hh-hhHHHhhCCCCccccccCccEE
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RL-ATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~---~~-~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      .+++++.+.. + +.|++|||++|+++.+.++++.      +.+..+|++.+   +. ...|++.++      +.++|+|
T Consensus        41 ~~~~~i~~~~-V-vvf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g------~~tvP~i  106 (146)
T 2ht9_A           41 QIQETISDNC-V-VIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTG------ERTVPRI  106 (146)
T ss_dssp             HHHHHHHHCS-E-EEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHS------CCCSCEE
T ss_pred             HHHHHhcCCC-E-EEEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhC------CCCcCeE
Confidence            3445555443 3 4499999999999999888763      45667888744   11 124778888      8899998


Q ss_pred             EEeCCCC
Q 014549          221 VAFPPGC  227 (423)
Q Consensus       221 ~~f~~g~  227 (423)
                      .  .+|.
T Consensus       107 f--i~G~  111 (146)
T 2ht9_A          107 F--VNGT  111 (146)
T ss_dssp             E--ETTE
T ss_pred             E--ECCE
Confidence            4  3553

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.29  E-value=0.001  Score=51.99  Aligned_cols=67  Identities=16%  Similarity=0.332  Sum_probs=50.6

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+..++..+.+.+.+..+...+  .+.++++|++.+.|++++|+++ .....+.|..+.+.|.++|++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~~~~~l~~~l~~  103 (105)
T 1fb6_A           37 APVIDELAKEYSGKIAVYKLNTDE--APGIATQYNIRSIPTVLFFKNG-ERKESIIGAVPKSTLTDSIEK  103 (105)
T ss_dssp             HHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEETT-EEEEEEEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCceEEEEEcCcc--hHHHHHhCCCCcccEEEEEeCC-eEEEEEecCCCHHHHHHHHHh
Confidence            455666777777667777775432  3679999999999999999743 333456788888999999976

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.28  E-value=0.0001  Score=60.35  Aligned_cols=70  Identities=11%  Similarity=0.271  Sum_probs=48.6

Q ss_pred             CcccccCCCCcEEEEEecCCCcccccc-HHHHHHHHHHhhccceEEEEEcccch----hhhHHHhhCCCCccccccCccE
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQF-SGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~-~p~~~~~A~~l~~~~~~~~Vdc~~~~----~~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      .+++.+....  ++.|++|||++|+++ .+.+++.+.   ..+.+..+|.++++    ....|.+.++      +.++|+
T Consensus        17 ~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g------~~tvP~   85 (118)
T 3c1r_A           17 HVKDLIAENE--IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEING------QRTVPN   85 (118)
T ss_dssp             HHHHHHHHSS--EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHS------CCSSCE
T ss_pred             HHHHHHccCc--EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhC------CCCcCE
Confidence            4445554443  556999999999998 887765541   23688899988543    1245788888      889998


Q ss_pred             EEEeCCCC
Q 014549          220 LVAFPPGC  227 (423)
Q Consensus       220 i~~f~~g~  227 (423)
                      |  |.+|+
T Consensus        86 v--fi~g~   91 (118)
T 3c1r_A           86 I--YINGK   91 (118)
T ss_dssp             E--EETTE
T ss_pred             E--EECCE
Confidence            7  55663

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.27  E-value=0.00028  Score=60.53  Aligned_cols=56  Identities=11%  Similarity=0.106  Sum_probs=36.5

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .++++++.|| +.||+.|..-.|.+.++.++++.. +.+..|+.+........+++++
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~   86 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNK   86 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcC
Confidence            3578899998 999999999999998888888765 5777787774434444555554

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=97.26  E-value=0.00082  Score=62.08  Aligned_cols=98  Identities=12%  Similarity=0.020  Sum_probs=66.0

Q ss_pred             CCCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC-------CCC------------c
Q 014549          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------PIG------------Q  210 (423)
Q Consensus       152 ~~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~-------~~~------------~  210 (423)
                      .+++++|.||+ .||+.|..-.|.+.++.+++++. +.|..|+++........++++       ++.            .
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            35789999999 99999999999999999999764 688888887443333334332       111            2


Q ss_pred             ccccc------CccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          211 IFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~------~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      .|++.      .+|+.+++-+....   ...+.|    .++.+++++.+...
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I---~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVL---RQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeE---EEEEecCCCCCCCHHHHHHHHHHh
Confidence            34465      57998888554432   112222    45678888887654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.24  E-value=0.0012  Score=53.78  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=53.8

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      .+.+..++..+...+.|+.+.....+...++++|+|.+.|++++|..++.....+.|..+.+.|.+||+...
T Consensus        45 ~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~  116 (126)
T 2l57_A           45 QKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLG  116 (126)
T ss_dssp             HHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence            455666777776667777775212224779999999999999999855555556789899999999998853

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.23  E-value=0.00041  Score=59.14  Aligned_cols=83  Identities=14%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEE---------------------------------------
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMV---------------------------------------  191 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~V---------------------------------------  191 (423)
                      .+.+..+|.|..++|++|+++.+.++++     +.+++.-+                                       
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~   86 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPV   86 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCT
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCC
Confidence            4578899999999999999999987754     22222111                                       


Q ss_pred             ---Ecc-cchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          192 ---ELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       192 ---dc~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         .|. .-.....+++++|      |+++||+++ .+|.       .+.|..+.+.|.+++.+.
T Consensus        87 ~~~~~~~~v~~~~~la~~~g------I~gtPt~vi-~nG~-------~i~G~~~~~~l~~~i~~~  137 (147)
T 3gv1_A           87 GGSICDNPVAETTSLGEQFG------FNGTPTLVF-PNGR-------TQSGYSPMPQLEEIIRKN  137 (147)
T ss_dssp             TCCCCSCSHHHHHHHHHHTT------CCSSCEEEC-TTSC-------EEESCCCTTHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHhC------CCccCEEEE-ECCE-------EeeCCCCHHHHHHHHHHH
Confidence               121 0112455777777      999999997 5553       577999999999998776

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.23  E-value=0.00034  Score=54.04  Aligned_cols=72  Identities=6%  Similarity=-0.023  Sum_probs=49.1

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEccc--chh----hhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--IRL----ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~--~~~----~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      ++.|++|||++|++..+..++..      +.+-.+|.+.  ...    ..++.+.++      +.++|++.+  +|.   
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g------~~~vP~l~~--~g~---   76 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISG------SYSVPVVVK--GDK---   76 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHS------SSCSCEEEE--TTE---
T ss_pred             EEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcC------CCCcCEEEE--CCE---
Confidence            56788999999999888877653      3344566551  111    255677778      889999887  542   


Q ss_pred             CCcccccCCCCHHHHHHHHH
Q 014549          231 DCMTRFEGELSVDAVTDWFA  250 (423)
Q Consensus       231 ~~~~~y~G~~~~~~l~~fi~  250 (423)
                           .-|..+.+.|.+++.
T Consensus        77 -----~i~G~~~~~l~~~l~   91 (92)
T 3ic4_A           77 -----HVLGYNEEKLKELIR   91 (92)
T ss_dssp             -----EEESCCHHHHHHHHH
T ss_pred             -----EEeCCCHHHHHHHhc
Confidence                 224458888888874

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.22  E-value=0.00019  Score=57.26  Aligned_cols=66  Identities=8%  Similarity=0.061  Sum_probs=45.7

Q ss_pred             CcccccCCCCcEEEEEec-----CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCcc
Q 014549          145 DFPSIFHDSKPWLIQVYS-----DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYa-----pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~P  218 (423)
                      .++++++++. + +.|++     |||++|+++.+.+++..      +.+..+|.++++.. ..+.+.+|      +.++|
T Consensus         9 ~~~~~i~~~~-v-vvf~~g~~~~~~C~~C~~~~~~L~~~~------i~~~~vdi~~~~~~~~~l~~~~g------~~~vP   74 (105)
T 2yan_A            9 RLKVLTNKAS-V-MLFMKGNKQEAKCGFSKQILEILNSTG------VEYETFDILEDEEVRQGLKAYSN------WPTYP   74 (105)
T ss_dssp             HHHHHHTSSS-E-EEEESBCSSSBCTTHHHHHHHHHHHHT------CCCEEEEGGGCHHHHHHHHHHHT------CCSSC
T ss_pred             HHHHHhccCC-E-EEEEecCCCCCCCccHHHHHHHHHHCC------CCeEEEECCCCHHHHHHHHHHHC------CCCCC
Confidence            3455565554 3 34777     99999999998887653      67888998855432 23556667      88999


Q ss_pred             EEEEeCCC
Q 014549          219 SLVAFPPG  226 (423)
Q Consensus       219 ti~~f~~g  226 (423)
                      +|  |.+|
T Consensus        75 ~v--~i~g   80 (105)
T 2yan_A           75 QL--YVKG   80 (105)
T ss_dssp             EE--EETT
T ss_pred             eE--EECC
Confidence            98  4455

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.19  E-value=0.00071  Score=54.70  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEec-CC-CC--CchHHHHHHHhccccceEEEEEccccc--cHHHHhhcCCCC-CCeE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSK-TG-ER--ASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVES-APAI  334 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~-~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~--~~~l~~~f~v~~-~Ptl  334 (423)
                      +++.+.++++++.   ++++++++.. .| .|  ..+.+..++..  ..+.|..+.+.+..  +..++++|||.+ .|++
T Consensus        11 i~s~e~f~~ii~~---~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~   85 (112)
T 3iv4_A           11 LSSIDQFEQVIEE---NKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQA   85 (112)
T ss_dssp             CCSHHHHHHHHHH---CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEE
T ss_pred             cCCHHHHHHHHhc---CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCCeE
Confidence            4544446666764   3477777653 22 11  23455555553  57889999765542  256999999995 9999


Q ss_pred             EEecCCCcceeEecCCCChhHHHHHH
Q 014549          335 VFLKDPGVKPVVYYGSFNNSRLSEVM  360 (423)
Q Consensus       335 ~lfk~~~~~~~~y~g~~~~~~l~~fi  360 (423)
                      ++|++|...-...++.++.+.|.+.+
T Consensus        86 il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           86 FYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             EEEECCEEEEEeeccccCHHHHHHhh
Confidence            99998766555557888888887654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.19  E-value=0.00043  Score=59.72  Aligned_cols=54  Identities=13%  Similarity=0.072  Sum_probs=40.8

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      +++++|.|| +.||+.|..-.|.+.++.+++ ..+.|..|+++........+++++
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~   97 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEG   97 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcC
Confidence            568999998 899999999999999999988 557888888874332233344444

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.17  E-value=0.00033  Score=52.57  Aligned_cols=71  Identities=10%  Similarity=0.075  Sum_probs=48.3

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~  235 (423)
                      ++.|+++||++|+++.+.+++.      .+.+..+|.++++. ..++.+.++      +.++|++.  .+|..       
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~l~--~~g~~-------   61 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSG------RTTVPQIF--IDAQH-------   61 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHS------SCCSCEEE--ETTEE-------
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhC------CCCcCEEE--ECCEE-------
Confidence            5678999999999999888764      25677788875432 244667778      88999984  35532       


Q ss_pred             ccCCCCHHHHHHHHHH
Q 014549          236 FEGELSVDAVTDWFAT  251 (423)
Q Consensus       236 y~G~~~~~~l~~fi~~  251 (423)
                      ..|   .++|.+++.+
T Consensus        62 i~g---~~~i~~~~~~   74 (82)
T 1fov_A           62 IGG---YDDLYALDAR   74 (82)
T ss_dssp             EES---HHHHHHHHHT
T ss_pred             EeC---HHHHHHHHHC
Confidence            222   3567776644

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=97.17  E-value=0.0012  Score=53.69  Aligned_cols=95  Identities=23%  Similarity=0.219  Sum_probs=60.5

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC-CC--CchHHHHHHHhcccc-ceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG-ER--ASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~-~~--~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+.+++.+.   .++++++ |+++.+ .|  ..+.+..++..+.+. +.|+.+....  ...++++|+|.+.|++++
T Consensus        20 i~~~~~f~~~l~---~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~   94 (121)
T 2j23_A           20 ISSYDQFKQVTG---GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE--QSQIAQEVGIRAMPTFVF   94 (121)
T ss_dssp             CCSHHHHHHHHS---SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT--CHHHHHHHTCCSSSEEEE
T ss_pred             cCCHHHHHHHHc---CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC--CHHHHHHcCCCcccEEEE
Confidence            555444555553   2334444 555422 22  245556666666544 6677765432  367999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      |+++ .....+.|. +.+.|.+||++.
T Consensus        95 ~~~G-~~~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           95 FKNG-QKIDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             EETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EECC-eEEeeEcCC-CHHHHHHHHHHh
Confidence            9743 333456787 889999999873

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.15  E-value=0.0018  Score=51.43  Aligned_cols=81  Identities=21%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549          278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN  353 (423)
Q Consensus       278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~  353 (423)
                      ++++++ |+++.+   ....|.+..++..+.+ +.|+.+...  +...++++|+|.+.|++++|++ +.....+.|. +.
T Consensus        24 ~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~~-G~~~~~~~G~-~~   98 (109)
T 3f3q_A           24 DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVD--ELGDVAQKNEVSAMPTLLLFKN-GKEVAKVVGA-NP   98 (109)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT--TCHHHHHHTTCCSSSEEEEEET-TEEEEEEESS-CH
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECC--CCHHHHHHcCCCccCEEEEEEC-CEEEEEEeCC-CH
Confidence            345555 444422   2234666777777753 677777543  2478999999999999999984 4444456777 67


Q ss_pred             hHHHHHHHhh
Q 014549          354 SRLSEVMEQN  363 (423)
Q Consensus       354 ~~l~~fi~~~  363 (423)
                      +.|.++|+++
T Consensus        99 ~~l~~~i~~~  108 (109)
T 3f3q_A           99 AAIKQAIAAN  108 (109)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            8999999864

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=97.15  E-value=0.0031  Score=53.47  Aligned_cols=97  Identities=13%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             cccchhhhhhhhhcCCCceE-EEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVK-VIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~-vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.++..+... .++++ |.|+++.|   ....|.+..++..+ ..+.|+.+...+  .+.++++|+|.++|++++|
T Consensus        17 l~~~~~~~~~~~~~-~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~   92 (153)
T 2wz9_A           17 VGSAGQFEELLRLK-AKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEG--VPEVSEKYEISSVPTFLFF   92 (153)
T ss_dssp             ECSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEEEE
T ss_pred             cCCHHHHHHHHHhc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-CCeEEEEEECCC--CHHHHHHcCCCCCCEEEEE
Confidence            55434355556542 13344 44555422   22345666677776 457777776432  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      ++ +.....+.| .+.+.|.+||++..
T Consensus        93 ~~-G~~~~~~~G-~~~~~l~~~i~~~l  117 (153)
T 2wz9_A           93 KN-SQKIDRLDG-AHAPELTKKVQRHA  117 (153)
T ss_dssp             ET-TEEEEEEES-SCHHHHHHHHHHHS
T ss_pred             EC-CEEEEEEeC-CCHHHHHHHHHHHh
Confidence            83 333334567 47788999998854

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.14  E-value=0.0016  Score=52.52  Aligned_cols=66  Identities=20%  Similarity=0.269  Sum_probs=49.2

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..|.+ +.|..+...+  ...++++|+|.+.|++++|+++ .....+.|.. .+.|.+||++.
T Consensus        53 ~~~l~~~~~~~~~-~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~l~~~l~~~  118 (122)
T 2vlu_A           53 APVFADLAKKFPN-AVFLKVDVDE--LKPIAEQFSVEAMPTFLFMKEG-DVKDRVVGAI-KEELTAKVGLH  118 (122)
T ss_dssp             HHHHHHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSSEEEEEETT-EEEEEEESSC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-cEEEEEECCC--CHHHHHHcCCCcccEEEEEeCC-EEEEEEeCcC-HHHHHHHHHHH
Confidence            4566667777765 7777775432  4679999999999999999754 3334567887 88999999874

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.13  E-value=0.00052  Score=63.83  Aligned_cols=89  Identities=9%  Similarity=-0.067  Sum_probs=63.5

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh------------------------hhHHHhhCCCC
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL------------------------ATHLAERKPIG  209 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~------------------------~~~l~~~~~~~  209 (423)
                      .+|+.|+++||+.|....|.+.+++++++.. +.|..|+++....                        ...+++.|+  
T Consensus        36 vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~yg--  113 (249)
T 3a2v_A           36 FVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLG--  113 (249)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHT--
T ss_pred             EEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhC--
Confidence            4567889999999999999999999999865 7888899874221                        234666666  


Q ss_pred             cccccc-------CccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          210 QIFFRR-------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~-------~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                          +.       .+|++.++-+++..   ...+.|    .++.++|...+...
T Consensus       114 ----v~~~~~g~~~~p~~fIID~dG~I---~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          114 ----LLHAESATHTVRGVFIVDARGVI---RTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             ----CCCTTCSSSCCEEEEEECTTSBE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             ----CccccCCCcccceEEEECCCCeE---EEEEecCCcccchhHHHHHHHHHH
Confidence                65       88998888544432   112222    36889998888654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=97.13  E-value=0.0014  Score=54.56  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=58.0

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      ++|.|+++.+   ....+.+..++..+.+.+.|+.+...+  ...++++|+|.++|++++|+++ .....+.|..+.+.|
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l  129 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE--HPGLAARYGVRSVPTLVLFRRG-APVATWVGASPRRVL  129 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEEETT-EEEEEEESCCCHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHCCCCccCEEEEEeCC-cEEEEEeCCCCHHHH
Confidence            5555665432   123466677888887667777776433  3679999999999999999754 333456898899999


Q ss_pred             HHHHHhh
Q 014549          357 SEVMEQN  363 (423)
Q Consensus       357 ~~fi~~~  363 (423)
                      .+||++.
T Consensus       130 ~~~i~~~  136 (140)
T 1v98_A          130 EERLRPY  136 (140)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=97.12  E-value=0.0024  Score=50.79  Aligned_cols=92  Identities=21%  Similarity=0.307  Sum_probs=59.5

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++..+ +++.++.   ++++++ |+++.+   ....+.+..++..+. .+.|+.+...+  ...++++|+|.+.|++++|
T Consensus        14 ~~~~~-f~~~~~~---~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   86 (112)
T 1syr_A           14 TSQAE-FDSIISQ---NELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDE--VSEVTEKENITSMPTFKVY   86 (112)
T ss_dssp             CSHHH-HHHHHHH---CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--THHHHHHTTCCSSSEEEEE
T ss_pred             CCHHH-HHHHHcc---CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCC--CHHHHHHcCCCcccEEEEE
Confidence            44444 4555543   235555 444322   123455666777765 46777775432  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +++ .....+.|. +.+.|.+||++
T Consensus        87 ~~G-~~~~~~~G~-~~~~l~~~l~~  109 (112)
T 1syr_A           87 KNG-SSVDTLLGA-NDSALKQLIEK  109 (112)
T ss_dssp             ETT-EEEEEEESC-CHHHHHHHHHT
T ss_pred             ECC-cEEEEEeCC-CHHHHHHHHHH
Confidence            754 333456788 88999999986

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=97.12  E-value=0.0013  Score=61.32  Aligned_cols=98  Identities=13%  Similarity=0.018  Sum_probs=64.8

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC-------CCC------------c
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------PIG------------Q  210 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~-------~~~------------~  210 (423)
                      .+++++|.|| +.||+.|..-.|.+.++.+++++. +.|..|+++........++++       ++.            .
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            3568889998 999999999999999999999765 688888887443333344432       111            2


Q ss_pred             ccccc------CccEEEEeCCCCCCCCCcccccC----CCCHHHHHHHHHHh
Q 014549          211 IFFRR------GLPSLVAFPPGCKSSDCMTRFEG----ELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~------~~Pti~~f~~g~~~~~~~~~y~G----~~~~~~l~~fi~~~  252 (423)
                      .|++.      .+|+++++-+....   ...+.+    .++.+++++.+...
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I---~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGIL---RQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBE---EEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeE---EEEEecCCCCCCCHHHHHHHHHhh
Confidence            23353      46888888654432   112222    55678888777543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=97.11  E-value=0.0027  Score=50.91  Aligned_cols=95  Identities=16%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.++..+... .++++++ |+++.+   ....+.+..++.++  .+.|+.+...  +...++++|+|.+.|++++|
T Consensus        18 l~~~~~~~~~l~~~-~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~   92 (117)
T 2xc2_A           18 LKQDGDLESLLEQH-KNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVD--KLEETARKYNISAMPTFIAI   92 (117)
T ss_dssp             CCSTTHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETT--TSHHHHHHTTCCSSSEEEEE
T ss_pred             eCCHHHHHHHHHhC-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECC--ccHHHHHHcCCCccceEEEE
Confidence            55533355555532 2334444 555422   12345566666665  5666666532  23679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.| .+.+.|.++|+++
T Consensus        93 ~~G-~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           93 KNG-EKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             ETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred             eCC-cEEEEEeC-CCHHHHHHHHHHh
Confidence            754 33344577 6788899999763

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.09  E-value=0.00083  Score=57.76  Aligned_cols=56  Identities=13%  Similarity=0.077  Sum_probs=44.9

Q ss_pred             CCCcEEEEEe-cCCCcccc-ccHHHHHHHHHHhhcc-ce-EEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCG-QFSGAWKTIAALLEGI-AN-TGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~-~~~p~~~~~A~~l~~~-~~-~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++|.|| +.||+.|. .-.|.+.++.++++.. +. |..|+.+........+++++
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~   93 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYP   93 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcC
Confidence            3568899999 89999999 8999999999998753 67 88888875444556677777

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.08  E-value=0.00073  Score=56.17  Aligned_cols=96  Identities=13%  Similarity=0.101  Sum_probs=61.6

Q ss_pred             cccchhhhhhhhhcCCCc-eEEEEEecC---CCCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCC------C
Q 014549          262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVE------S  330 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~------~  330 (423)
                      ++.++ ++..+... ..+ ++|.|+++.   |....|.+..++.+|.+ .+.|+.+...  +.+.++++|+|.      +
T Consensus        12 l~~~~-f~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~~~~~~   87 (137)
T 2dj0_A           12 FNDKT-IDEELERD-KRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG--RYTDVSTRYKVSTSPLTKQ   87 (137)
T ss_dssp             CCTTH-HHHHHHHS-TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTT--TCHHHHHHTTCCCCSSSSC
T ss_pred             ccHhh-HHHHHhcC-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCc--cCHHHHHHccCcccCCcCC
Confidence            55555 44455433 233 455555542   34456888888888864 5666666432  247899999998      9


Q ss_pred             CCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          331 APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       331 ~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .||+++|+++. ....+.|..+.+.|.+|+.+
T Consensus        88 ~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           88 LPTLILFQGGK-EAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             SSEEEEESSSS-EEEEESCBCSSSCBCCCCCC
T ss_pred             CCEEEEEECCE-EEEEecCcCchHHHHHHHhc
Confidence            99999997543 33456787776666666655

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.08  E-value=0.00054  Score=59.72  Aligned_cols=63  Identities=13%  Similarity=0.110  Sum_probs=48.5

Q ss_pred             CCCCcEEEEEecCCCcccccc-HHHHHHHHHHhhcc-ce-EEEEEcccchhhhHHHhhCCCCcccccc-CccE
Q 014549          151 HDSKPWLIQVYSDGSYLCGQF-SGAWKTIAALLEGI-AN-TGMVELGDIRLATHLAERKPIGQIFFRR-GLPS  219 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~-~p~~~~~A~~l~~~-~~-~~~Vdc~~~~~~~~l~~~~~~~~~~~i~-~~Pt  219 (423)
                      ....++|+.|++.||+.|..- .|.+.++.++++.. +. |..|+.+........+++++      +. .||.
T Consensus        42 ~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~------~~~~fp~  108 (171)
T 2pwj_A           42 KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQ------AKDAIEF  108 (171)
T ss_dssp             TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTT------CTTTSEE
T ss_pred             CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhC------CCCceEE
Confidence            334578889999999999997 99999999988754 56 88888875445566777777      63 6773

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=97.08  E-value=0.001  Score=53.59  Aligned_cols=79  Identities=20%  Similarity=0.199  Sum_probs=56.2

Q ss_pred             eEEEEEecCC-CC--CchHHHHHHHhccc-----cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcc-eeEecCC
Q 014549          280 VKVIFFSKTG-ER--ASPFVRQISRNYWA-----YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK-PVVYYGS  350 (423)
Q Consensus       280 ~~vl~f~~~~-~~--~~~~~~~~a~~~~~-----~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~-~~~y~g~  350 (423)
                      ++|.|+++.+ .|  ..|.+..++..+.+     .+.|+.+.....   .+++  +|.++||+++|++++.. ...|.|.
T Consensus        28 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~--~v~~~Pt~~~~~~~~~~~~~~~~G~  102 (121)
T 2djj_A           28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN---DVPD--EIQGFPTIKLYPAGAKGQPVTYSGS  102 (121)
T ss_dssp             EEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS---CCSS--CCSSSSEEEEECSSCTTSCCCCCCC
T ss_pred             EEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc---cccc--ccCcCCeEEEEeCcCCCCceEecCC
Confidence            4555555432 22  35667778888865     677777764433   2555  99999999999876553 5677899


Q ss_pred             CChhHHHHHHHhh
Q 014549          351 FNNSRLSEVMEQN  363 (423)
Q Consensus       351 ~~~~~l~~fi~~~  363 (423)
                      .+.+.|.+||+++
T Consensus       103 ~~~~~l~~~i~~~  115 (121)
T 2djj_A          103 RTVEDLIKFIAEN  115 (121)
T ss_dssp             SCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999885

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.07  E-value=0.0015  Score=52.06  Aligned_cols=67  Identities=15%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+.+..++..+. .+.|..+...+  ..+++++|++.+.|++++|+++ .....+.|..+.+.|.+++..+
T Consensus        38 ~~~l~~~~~~~~-~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~G-~~v~~~~G~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           38 EKVLDKFGARAP-QVAISSVDSEA--RPELMKELGFERVPTLVFIRDG-KVAKVFSGIMNPRELQALYASI  104 (110)
T ss_dssp             HHHHHHHHTTCT-TSCEEEEEGGG--CHHHHHHTTCCSSCEEEEEESS-SEEEEEESCCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCC-CcEEEEEcCcC--CHHHHHHcCCcccCEEEEEECC-EEEEEEcCCCCHHHHHHHHHHH
Confidence            455666776654 56777775432  4779999999999999999654 3444568988999999999874

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.06  E-value=0.00028  Score=62.88  Aligned_cols=43  Identities=7%  Similarity=-0.007  Sum_probs=38.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~  194 (423)
                      +.++.+|+|+++||+||+++.|.++++.+.+.+.+.|..+...
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence            4678999999999999999999999999888777788888775

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=97.05  E-value=0.00045  Score=59.85  Aligned_cols=61  Identities=11%  Similarity=0.031  Sum_probs=48.1

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      +++++|.|| +.||+.|....|.+.++.+++ ..+.+..|+++........+++++      +..+|.+
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~------~~~~~~l  108 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFN------IQNVTVA  108 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTT------CCSSEEE
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcC------CCCeEEe
Confidence            568999998 899999999999999998888 567888888875444556677777      5456643

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.0034  Score=49.75  Aligned_cols=98  Identities=14%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC-CC--CchHHHHHHHhc-cccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG-ER--ASPFVRQISRNY-WAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~-~~--~~~~~~~~a~~~-~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+.+++.+.....++++++ |+++.+ .|  ..|.+..++..+ ...+.|+.+...+  ...++++|+|.+.|++++
T Consensus         5 i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   82 (112)
T 3d6i_A            5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE--NSEISELFEISAVPYFII   82 (112)
T ss_dssp             ECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             cCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc--CHHHHHHcCCCcccEEEE
Confidence            4552334555543122345554 555422 22  345666677764 2347777775432  467999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      |+++ .....+.|. ....|.++|++.
T Consensus        83 ~~~G-~~~~~~~G~-~~~~l~~~l~~~  107 (112)
T 3d6i_A           83 IHKG-TILKELSGA-DPKEYVSLLEDC  107 (112)
T ss_dssp             EETT-EEEEEECSC-CHHHHHHHHHHH
T ss_pred             EECC-EEEEEecCC-CHHHHHHHHHHH
Confidence            9743 333445676 445688998764

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=97.03  E-value=0.00079  Score=57.99  Aligned_cols=54  Identities=15%  Similarity=0.030  Sum_probs=41.0

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI  208 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~  208 (423)
                      +++++|.|| +.||+.|..-.|.+.++.++  ..+.+..|+++........++++++
T Consensus        46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~  100 (166)
T 3p7x_A           46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGL  100 (166)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTC
T ss_pred             CCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCC
Confidence            578889998 78999999999999988777  3467777887754445556666664

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=97.03  E-value=0.0029  Score=51.89  Aligned_cols=95  Identities=13%  Similarity=0.040  Sum_probs=61.1

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEec
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK  338 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk  338 (423)
                      +++.+.+++.+...  ..++|.|+++.+   ....|.+..++..+ ..+.|+.+...+  ..+++++|+|.+.||+++|+
T Consensus        24 l~~~~~f~~~~~~~--k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~i~~   98 (125)
T 1r26_A           24 VYSVEQFRNIMSED--ILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADN--NSEIVSKCRVLQLPTFIIAR   98 (125)
T ss_dssp             ECCHHHHHHHHHSS--SCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEE
T ss_pred             CCCHHHHHHHHccC--CEEEEEEECCcCHhHHHHHHHHHHHHHHC-CCCEEEEEECCC--CHHHHHHcCCCcccEEEEEe
Confidence            56523345555322  224444555432   22456677778777 357777776432  36799999999999999997


Q ss_pred             CCCcceeEecCCCChhHHHHHHHhh
Q 014549          339 DPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       339 ~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ++ .....+.| .+.+.|.+||++.
T Consensus        99 ~G-~~~~~~~G-~~~~~l~~~l~~~  121 (125)
T 1r26_A           99 SG-KMLGHVIG-ANPGMLRQKLRDI  121 (125)
T ss_dssp             TT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred             CC-eEEEEEeC-CCHHHHHHHHHHH
Confidence            54 33345678 6888899998763

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.03  E-value=0.00084  Score=58.31  Aligned_cols=56  Identities=9%  Similarity=-0.006  Sum_probs=44.3

Q ss_pred             CCCcEEEEEe-cCCCccccc-cHHHHHHHHHHhhcc-c-eEEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQ-FSGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~-~~p~~~~~A~~l~~~-~-~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++|.|| +.||+.|.. -.|.+.++.++++.. + .|..|+.+........+++++
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~   89 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHG   89 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcC
Confidence            3567778876 999999999 899999999988754 7 888888875444556777777

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.00  E-value=0.00042  Score=53.50  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      -++.|++|||++|+++.+.+++.      .+.+..+|.++++. ..++.+.++      +.++|++  |.+|
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~------~~~vP~l--~~~g   64 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSG------RNTFPQI--FIGS   64 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHT------SSCCCEE--EETT
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence            36789999999999988877654      25677888875432 234666777      8899976  3455

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=96.99  E-value=0.00043  Score=59.51  Aligned_cols=55  Identities=13%  Similarity=0.030  Sum_probs=43.9

Q ss_pred             CCCcEEEEEec-CCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++|.||+ .||+.|....|.+.++.+++ ..+.+..|+++........+++++
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~   96 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEG   96 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcC
Confidence            35689999995 99999999999999998888 557888888875444455667776

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.99  E-value=0.00085  Score=55.17  Aligned_cols=85  Identities=19%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             CceEEEEE-ecCC-CC--CchHHHHHHHhcc--ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc-ceeEec-C
Q 014549          278 HKVKVIFF-SKTG-ER--ASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYY-G  349 (423)
Q Consensus       278 ~~~~vl~f-~~~~-~~--~~~~~~~~a~~~~--~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~-~~~~y~-g  349 (423)
                      ++++++.| ++.| .|  ..|.+..++..+.  ..+.|+.+...  ....++++|+|.++||+++|+++.. .++.|. |
T Consensus        25 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~gg  102 (133)
T 2dj3_A           25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT--ANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGG  102 (133)
T ss_dssp             TSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTT--TSCCCCSSCCCSSSSEEEEECTTCTTSCEECCSS
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCC--cCHHHHhhcCCCcCCEEEEEeCCCcccceEecCC
Confidence            34555544 4422 12  3466677777776  34555555422  2356788999999999999987654 345677 5


Q ss_pred             CCChhHHHHHHHhhc
Q 014549          350 SFNNSRLSEVMEQNK  364 (423)
Q Consensus       350 ~~~~~~l~~fi~~~~  364 (423)
                      ..+.+.|.+||+++.
T Consensus       103 ~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A          103 NRDLEHLSKFIDEHA  117 (133)
T ss_dssp             CCSTTHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHhc
Confidence            688999999999854

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.98  E-value=0.0023  Score=57.97  Aligned_cols=97  Identities=15%  Similarity=0.266  Sum_probs=66.6

Q ss_pred             cccchhhhhhhhhcCCCceE-EEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVK-VIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~-vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +|.+++....+++   ++++ |.|+++.|   ....|.+..++..+.+.+.|+.+....  ...++++|+|.++||+++|
T Consensus        17 lt~~~f~~~v~~~---~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~   91 (222)
T 3dxb_A           17 LTDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLF   91 (222)
T ss_dssp             CCTTTHHHHHTTC---SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CTTTGGGGTCCSBSEEEEE
T ss_pred             CCHHHHHHHHHhc---CCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCC--CHHHHHHcCCCcCCEEEEE
Confidence            5665543333332   3344 44555432   223566777888887777887776433  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      +++ .....+.|..+.+.|.+||+...
T Consensus        92 ~~G-~~~~~~~G~~~~~~l~~~l~~~l  117 (222)
T 3dxb_A           92 KNG-EVAATKVGALSKGQLKEFLDANL  117 (222)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHHHS
T ss_pred             ECC-eEEEEeccccChHHHHHHHHhhc
Confidence            853 34446789999999999999864

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=96.95  E-value=0.0018  Score=51.31  Aligned_cols=75  Identities=7%  Similarity=0.079  Sum_probs=48.4

Q ss_pred             CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--hhhhHH----HhhCCCCccccccCccEEEEeCCCC
Q 014549          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHL----AERKPIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--~~~~~l----~~~~~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      +.-++.|+++||++|++..+.+++..      +.+-.+|.+..  ....++    .+..+      +.++|+|.+  +|.
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g------~~~vP~l~i--~~~   86 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNP------SVSFPTTII--NDE   86 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCT------TCCSCEEEE--TTT
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCC------CCccCEEEE--CCC
Confidence            34567799999999999998887653      34556666531  111222    23457      889999876  331


Q ss_pred             CCCCCcccccCCCCHHHHHHHH
Q 014549          228 KSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       228 ~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                             .+-|..+.+.|.+++
T Consensus        87 -------~~igg~~~~~l~~~L  101 (103)
T 3nzn_A           87 -------KAIVGFKEKEIRESL  101 (103)
T ss_dssp             -------EEEESCCHHHHHHHT
T ss_pred             -------EEEEcCCHHHHHHHh
Confidence                   234667778777764

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=96.94  E-value=0.00045  Score=59.82  Aligned_cols=58  Identities=12%  Similarity=0.182  Sum_probs=43.2

Q ss_pred             CCCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCC
Q 014549          151 HDSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI  208 (423)
Q Consensus       151 ~~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~  208 (423)
                      ..++++++.|| +.||+.|..-.|.+.++.++++.. +.+..|+.+........++++++
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~   90 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRL   90 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTC
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCc
Confidence            45778888888 999999999888888888888765 67777887644344445555543

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=96.86  E-value=0.001  Score=59.53  Aligned_cols=55  Identities=9%  Similarity=0.066  Sum_probs=42.0

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++|.|| +.||+.|..-.|.+.++.+++ ..+.|..|+++........+++++
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~  132 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEG  132 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTT
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcC
Confidence            3578899998 789999999999999999988 457888888874433333445554

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=96.86  E-value=0.0034  Score=51.19  Aligned_cols=95  Identities=8%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.+++.+... +...++++|+ |+++.+   ....|.+..+|.+|. .+.|..++..+     .+++|+|.+.||+++|
T Consensus         8 it~~~f~~~v~-~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~-----~~~~~~v~~~PT~~~f   80 (118)
T 3evi_A            8 ISGNQYVNEVT-NAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNS-----CIQHYHDNCLPTIFVY   80 (118)
T ss_dssp             CCGGGHHHHTT-TCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGG-----TSTTCCGGGCSEEEEE
T ss_pred             eCHHHHHHHHH-hcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHHHCCCCCCCEEEEE
Confidence            55555333333 2222335555 555432   234677888998885 57888887543     2589999999999999


Q ss_pred             cCCCcceeEecC-------CCChhHHHHHHHhhc
Q 014549          338 KDPGVKPVVYYG-------SFNNSRLSEVMEQNK  364 (423)
Q Consensus       338 k~~~~~~~~y~g-------~~~~~~l~~fi~~~~  364 (423)
                      +++.... .+.|       .++.++|..+|.++.
T Consensus        81 k~G~~v~-~~~G~~~~gg~~~~~~~le~~L~~~g  113 (118)
T 3evi_A           81 KNGQIEA-KFIGIIECGGINLKLEELEWKLAEVG  113 (118)
T ss_dssp             ETTEEEE-EEESTTTTTCSSCCHHHHHHHHHTTT
T ss_pred             ECCEEEE-EEeChhhhCCCCCCHHHHHHHHHHcC
Confidence            9764332 2332       357889999998743

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.85  E-value=0.0032  Score=52.16  Aligned_cols=95  Identities=23%  Similarity=0.252  Sum_probs=63.3

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccc-------cccHHHHhhcCCCCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWRE-------EESSIWWNTFEVESA  331 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~-------~~~~~l~~~f~v~~~  331 (423)
                      ++.++ +++.+.+    .++|.|+++.|   ....|.+..++..+.  +.|+.+...+       .+...++++|+|.+.
T Consensus        21 l~~~~-~~~~~~~----~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~   93 (135)
T 3emx_A           21 ITPEE-FRQLLQG----DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGVEGT   93 (135)
T ss_dssp             CCHHH-HHHHHTS----SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSS
T ss_pred             cCHHH-HHHHhCC----cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCCcee
Confidence            44444 4444443    25565666532   223466677777764  7777776532       124789999999999


Q ss_pred             CeEEEecCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       332 Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      ||+++|++ +.....+.|..+.+.+.++++...
T Consensus        94 Pt~~~~~~-G~~v~~~~G~~~~~~~~~~i~~~~  125 (135)
T 3emx_A           94 PTLVFYKE-GRIVDKLVGATPWSLKVEKAREIY  125 (135)
T ss_dssp             SEEEEEET-TEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CeEEEEcC-CEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999994 444445689999999999998843

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.84  E-value=0.011  Score=46.59  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             cccchhhhhhhhhcCCCce-EEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKV-KVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~-~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.++ +.+.+... .+++ +|.|+++.+   ....|.+..++..+. .+.|+.+...+ +...++++|+|.+.||++++
T Consensus        10 l~~~~-~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~~   85 (111)
T 2pu9_C           10 VNKDT-FWPIVKAA-GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKIL   85 (111)
T ss_dssp             ECTTT-HHHHHTTC-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSS-TTHHHHHHHCCSBSSEEEEE
T ss_pred             echHH-HHHHHHhc-CCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-CeEEEEEecCc-chHHHHHHcCCCeeeEEEEE
Confidence            56555 44445432 2334 444555422   123456666777775 36777776432 24789999999999999998


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++. ....+.|. +.+.|.++|++.
T Consensus        86 ~~G~-~~~~~~G~-~~~~l~~~l~~~  109 (111)
T 2pu9_C           86 KENS-VVGEVTGA-KYDKLLEAIQAA  109 (111)
T ss_dssp             SSSS-EEEEEESS-CHHHHHHHHHHH
T ss_pred             eCCc-EEEEEcCC-CHHHHHHHHHHh
Confidence            7654 33345676 478899998763

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=96.83  E-value=0.0023  Score=51.43  Aligned_cols=79  Identities=13%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEcccc---c-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREE---E-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~---~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~  352 (423)
                      ++|.|+++.+   ....|.+..++..+...  +..+.....   + ...++++|+|.+.||+++|+++ .....+.|..+
T Consensus        32 ~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G-~~~~~~~G~~~  108 (118)
T 1zma_A           32 ATFFIGRKTCPYCRKFAGTLSGVVAETKAH--IYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG-QINVRCDSSMS  108 (118)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHCCC--CEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETT-EEEEECCTTCC
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCe--EEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECC-EEEEEecCCCC
Confidence            4444555432   22346666677666433  444433222   1 2578899999999999999754 33455689889


Q ss_pred             hhHHHHHHH
Q 014549          353 NSRLSEVME  361 (423)
Q Consensus       353 ~~~l~~fi~  361 (423)
                      .+.|.+||+
T Consensus       109 ~~~l~~~l~  117 (118)
T 1zma_A          109 AQEIKDFAG  117 (118)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999999985

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=96.82  E-value=0.00029  Score=62.52  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=36.4

Q ss_pred             CCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~  194 (423)
                      .++.+|+|++.||+||+++.|.+   +++++.+.+.++|..++..
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   58 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS   58 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence            46899999999999999999986   6888877777888888876

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=96.81  E-value=0.0069  Score=45.11  Aligned_cols=67  Identities=13%  Similarity=0.188  Sum_probs=50.3

Q ss_pred             CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          290 ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       290 ~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ....+.+..++.++.+.+.+..+...+  ..+++++|++.+.|++++  ++ . . .+.|..+.+.|.++|++.
T Consensus        18 ~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~--~G-~-~-~~~G~~~~~~l~~~l~~~   84 (85)
T 1fo5_A           18 PAAKRVVEEVANEMPDAVEVEYINVME--NPQKAMEYGIMAVPTIVI--NG-D-V-EFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             CTHHHHHHHHHHHCSSSEEEEEEESSS--SCCTTTSTTTCCSSEEEE--TT-E-E-ECCSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHCCCcccCEEEE--CC-E-E-eeecCCCHHHHHHHHHHh
Confidence            334577788888887677777776443  356899999999999988  32 2 2 678888889999999863

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=96.80  E-value=0.0014  Score=51.73  Aligned_cols=60  Identities=15%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhC-CCCccccccCccEEEEeCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERK-PIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~-~~~~~~~i~~~Pti~~f~~g  226 (423)
                      ...-++.|++|||++|++..+.+++..      +.+-.+|.++++.. ..+.+.. +      ..++|++  |.+|
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~------i~y~~idI~~~~~~~~~l~~~~~g------~~~vP~i--fi~g   75 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRKG------VEFQEYCIDGDNEAREAMAARANG------KRSLPQI--FIDD   75 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHHT------CCCEEEECTTCHHHHHHHHHHTTT------CCCSCEE--EETT
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHCC------CCCEEEEcCCCHHHHHHHHHHhCC------CCCCCEE--EECC
Confidence            344567799999999999998887653      56777888755432 2344444 6      7899987  4455

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=96.79  E-value=0.0057  Score=50.52  Aligned_cols=65  Identities=12%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             HHHHHhccccceEEEEEcccc--ccHHHHhhcCCCCCCeEEEe-cCCCcce-eEecCCCChhHHHHHHHh
Q 014549          297 RQISRNYWAYASFAFVLWREE--ESSIWWNTFEVESAPAIVFL-KDPGVKP-VVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       297 ~~~a~~~~~~~~f~~v~~~~~--~~~~l~~~f~v~~~Ptl~lf-k~~~~~~-~~y~g~~~~~~l~~fi~~  362 (423)
                      ..++..+. .+.++.+...+.  ....++++|+|.+.|++++| +++.... ..+.|..+.+.|.++|+.
T Consensus        57 ~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~  125 (134)
T 2fwh_A           57 PQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  125 (134)
T ss_dssp             HHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence            44555554 367777765432  23789999999999999999 4443321 357899999999999987

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.76  E-value=0.0036  Score=57.47  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccc---cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcc----eeEecC
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK----PVVYYG  349 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~----~~~y~g  349 (423)
                      ++|.|+++.|   ....|.+..++..+.+   .+.|+.+.....+...++++|+|.++||+++|+++...    .+.+.|
T Consensus        33 vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~~~~g  112 (244)
T 3q6o_A           33 WAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAG  112 (244)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECTTCCSSSCEECCCTT
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeEecCC
Confidence            4455655432   2245777888888876   67788876543345889999999999999999875432    233455


Q ss_pred             CCChhHHHHHHHhh
Q 014549          350 SFNNSRLSEVMEQN  363 (423)
Q Consensus       350 ~~~~~~l~~fi~~~  363 (423)
                       .+.+.|.++|.+.
T Consensus       113 -~~~~~l~~~i~~~  125 (244)
T 3q6o_A          113 -ADVQTLRERLIDA  125 (244)
T ss_dssp             -CCHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHH
Confidence             6888888888774

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=96.72  E-value=0.0069  Score=45.13  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=54.4

Q ss_pred             EEEEEec-C--CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHH
Q 014549          281 KVIFFSK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLS  357 (423)
Q Consensus       281 ~vl~f~~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~  357 (423)
                      ++.|+++ +  +....+.+..++.++.+.+.+..+...+  ..+++++|++.+.|++++  ++. .  .+.|..+.+.|.
T Consensus         5 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~--~G~-~--~~~G~~~~~~l~   77 (85)
T 1nho_A            5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMAVPAIAI--NGV-V--RFVGAPSREELF   77 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT--CGGGGGGTCSSCSSEEEE--TTT-E--EEECSSCCHHHH
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC--CHHHHHhCCceeeCEEEE--CCE-E--EEccCCCHHHHH
Confidence            4445543 2  2334677777888887677887776432  357999999999999998  332 2  568888889999


Q ss_pred             HHHHhh
Q 014549          358 EVMEQN  363 (423)
Q Consensus       358 ~fi~~~  363 (423)
                      ++|++.
T Consensus        78 ~~l~~~   83 (85)
T 1nho_A           78 EAINDE   83 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999873

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.72  E-value=0.00093  Score=53.82  Aligned_cols=64  Identities=14%  Similarity=0.237  Sum_probs=42.1

Q ss_pred             cccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc----hh-hhHHHhhCCCCccccccCccEEEE
Q 014549          148 SIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI----RL-ATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       148 ~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~----~~-~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      +.+++++  ++.|++|||++|++..+.+++..      +.+-.+|.+..    .. ...+.+..|      +.++|++  
T Consensus        14 ~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~~~~~l~~~~g------~~tvP~i--   77 (113)
T 3rhb_A           14 KTVTENT--VVIYSKTWCSYCTEVKTLFKRLG------VQPLVVELDQLGPQGPQLQKVLERLTG------QHTVPNV--   77 (113)
T ss_dssp             HHHHHSS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHHHHHHHS------CCSSCEE--
T ss_pred             HHHhcCC--EEEEECCCChhHHHHHHHHHHcC------CCCeEEEeecCCCChHHHHHHHHHHhC------CCCcCEE--
Confidence            4444444  66799999999999998887642      34566777642    22 222555557      7899998  


Q ss_pred             eCCCC
Q 014549          223 FPPGC  227 (423)
Q Consensus       223 f~~g~  227 (423)
                      |.+|+
T Consensus        78 fi~g~   82 (113)
T 3rhb_A           78 FVCGK   82 (113)
T ss_dssp             EETTE
T ss_pred             EECCE
Confidence            45663

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.0027  Score=51.82  Aligned_cols=62  Identities=11%  Similarity=0.089  Sum_probs=44.1

Q ss_pred             ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhccc
Q 014549          305 AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       305 ~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~  366 (423)
                      ..+.++.+.........++++|+|.++|++++|..++.....+.|..+.+.|.+||++..-+
T Consensus        61 ~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           61 RHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             HHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             cCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            34555555433223478999999999999999954444444578988999999999985443

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=96.70  E-value=0.0014  Score=58.03  Aligned_cols=55  Identities=11%  Similarity=0.093  Sum_probs=42.4

Q ss_pred             CCcEEEEEecCCCccccc-cHHHHHHHHHHhhcc-ce-EEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVYSDGSYLCGQ-FSGAWKTIAALLEGI-AN-TGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~-~~p~~~~~A~~l~~~-~~-~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ..++|+.|++.||+.|.. -.|.+.+++++++.. +. |..|+.+........+++++
T Consensus        57 k~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~  114 (184)
T 3uma_A           57 KRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSG  114 (184)
T ss_dssp             SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhC
Confidence            335566667999999999 599999999999765 56 88999885545566677776

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.68  E-value=0.0091  Score=52.42  Aligned_cols=96  Identities=19%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             CCCCcEEEEEecCCCccccccHHH-H--HHHHHHhhccceEEEEEcccchh------------hhHHH---hhCCCCccc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGA-W--KTIAALLEGIANTGMVELGDIRL------------ATHLA---ERKPIGQIF  212 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~-~--~~~A~~l~~~~~~~~Vdc~~~~~------------~~~l~---~~~~~~~~~  212 (423)
                      +..+..+|++++|||..|..|... |  +++.+.++....+-..|.+....            -..++   +.++     
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~-----  127 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQK-----  127 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSC-----
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcC-----
Confidence            468999999999999999988742 2  34666676666777777663321            01233   3367     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       +.+||++.++.+......-.....|..+++++++.+.+.
T Consensus       128 -~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          128 -TDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             -STTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             -CCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence             889999999865422111134567999999999887655

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.67  E-value=0.012  Score=47.43  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++++ +.+.+... .++++++ |+++.+   ....|.+..++.++. .+.|+.+...+ +...++++|+|.+.||++++
T Consensus        23 l~~~~-~~~~~~~~-~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~~   98 (124)
T 1faa_A           23 VNKDT-FWPIVKAA-GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKIL   98 (124)
T ss_dssp             ECTTT-HHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSS-TTHHHHHHHCCSSSSEEEEE
T ss_pred             ecchh-HHHHHHhc-CCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-CCEEEEEecCc-chHHHHHHcCCCeeeEEEEE
Confidence            55555 34444432 2334444 554422   123456666777765 46777775432 24779999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++. ....+.|.. .+.|.++|++.
T Consensus        99 ~~G~-~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           99 KENS-VVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             ETTE-EEEEEESSC-HHHHHHHHHHH
T ss_pred             eCCc-EEEEEcCCC-HHHHHHHHHHh
Confidence            7643 333456764 78899998763

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=96.65  E-value=0.0056  Score=47.66  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhC--CCCccccccCccEEEEeCCCCCCCCCc
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERK--PIGQIFFRRGLPSLVAFPPGCKSSDCM  233 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~--~~~~~~~i~~~Pti~~f~~g~~~~~~~  233 (423)
                      -++.|..|||++|++.+...++      ..+.+-.+|.++++...+...+.  |      .+++|+|++ .+|..     
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~------~gi~y~~idi~~d~~~~~~~~~~~~G------~~tVP~I~i-~Dg~~-----   66 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTA------NRIAYDEVDIEHNRAAAEFVGSVNGG------NRTVPTVKF-ADGST-----   66 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHHSSS------SSCSCEEEE-TTSCE-----
T ss_pred             cEEEEcCCCCHhHHHHHHHHHh------cCCceEEEEcCCCHHHHHHHHHHcCC------CCEeCEEEE-eCCEE-----
Confidence            3677889999999987765543      23577788988665443333332  4      778999754 45532     


Q ss_pred             ccccCCCCHHHHHHHHHHh
Q 014549          234 TRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       234 ~~y~G~~~~~~l~~fi~~~  252 (423)
                        . +..+.++|.+++.+.
T Consensus        67 --l-~~~~~~el~~~L~el   82 (92)
T 2lqo_A           67 --L-TNPSADEVKAKLVKI   82 (92)
T ss_dssp             --E-ESCCHHHHHHHHHHH
T ss_pred             --E-eCCCHHHHHHHHHHh
Confidence              2 234688898888765

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=96.63  E-value=0.021  Score=48.32  Aligned_cols=116  Identities=14%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             CCceeecccchhhhhhhhhcCCCceEEEEEecCCCC----CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC-
Q 014549          256 LPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES-  330 (423)
Q Consensus       256 ~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~----~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~-  330 (423)
                      +|.+..+|.++ ...+.++.-  ...+++|......    ..+.++.+|.+|++.+.|+.+.....+...+.+.||++. 
T Consensus        13 ~PLV~e~t~en-~~~~~~~~~--~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~   89 (147)
T 3bj5_A           13 LPLVIEFTEQT-APKIFGGEI--KTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKE   89 (147)
T ss_dssp             --CEEECCTTT-HHHHHSSSC--CEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGG
T ss_pred             CCeeEEecccc-HHHHhcCCC--ceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcc
Confidence            45555566555 344443221  1333445532111    124456689999999999988743233356889999985 


Q ss_pred             -CCeEEEecC-CCcceeEec-CCCChhHHHHHHHhhccccC-cccccc
Q 014549          331 -APAIVFLKD-PGVKPVVYY-GSFNNSRLSEVMEQNKLQEL-PQLRSV  374 (423)
Q Consensus       331 -~Ptl~lfk~-~~~~~~~y~-g~~~~~~l~~fi~~~~~~~l-p~l~~~  374 (423)
                       .|+|+++.. .+.....+. ++++.+.|.+|++...-..+ |.+.++
T Consensus        90 ~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~p~~KSE  137 (147)
T 3bj5_A           90 ECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQ  137 (147)
T ss_dssp             GCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSCEEECCS
T ss_pred             cCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCccccccCC
Confidence             899999864 333222333 78899999999999877666 444443

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.62  E-value=0.0017  Score=52.01  Aligned_cols=68  Identities=7%  Similarity=0.035  Sum_probs=46.1

Q ss_pred             CCcccccCCCCcEEEEEec-----CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCc
Q 014549          144 EDFPSIFHDSKPWLIQVYS-----DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGL  217 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYa-----pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~  217 (423)
                      +.+++++++++  ++.|+.     |||++|++..+.+++.      .+.+..+|.++++.. ..+.+..|      ..++
T Consensus         6 ~~~~~~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g------~~~v   71 (109)
T 1wik_A            6 SGLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSN------WPTY   71 (109)
T ss_dssp             CCHHHHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHS------CCSS
T ss_pred             HHHHHHhccCC--EEEEEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhC------CCCC
Confidence            34566676655  445677     9999999988877654      267889998855432 23555556      7789


Q ss_pred             cEEEEeCCCC
Q 014549          218 PSLVAFPPGC  227 (423)
Q Consensus       218 Pti~~f~~g~  227 (423)
                      |+|  |.+|.
T Consensus        72 P~i--fi~g~   79 (109)
T 1wik_A           72 PQL--YVRGD   79 (109)
T ss_dssp             CEE--ECSSS
T ss_pred             CEE--EECCE
Confidence            984  56664

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=96.62  E-value=0.018  Score=59.20  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=60.1

Q ss_pred             eEEEEEecCC---CCCchHHHHHHHhccc---cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc---ceeEecCC
Q 014549          280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV---KPVVYYGS  350 (423)
Q Consensus       280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~---~~~~y~g~  350 (423)
                      ++|.|+++.+   ....|.+..++.++.+   .+.|+.|...+.+..+++++|+|.++||+++|+++..   ....+.|.
T Consensus        33 vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~  112 (519)
T 3t58_A           33 WAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAG  112 (519)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSS
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCC
Confidence            4555666532   2346777888888876   6778887654334578999999999999999986432   23445677


Q ss_pred             CChhHHHHHHHhh
Q 014549          351 FNNSRLSEVMEQN  363 (423)
Q Consensus       351 ~~~~~l~~fi~~~  363 (423)
                      .+.+.|.++|.+.
T Consensus       113 ~~~~~L~~~l~~~  125 (519)
T 3t58_A          113 ANVQTLRMRLIDA  125 (519)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            8888888888775

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=96.61  E-value=0.006  Score=49.61  Aligned_cols=68  Identities=15%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             chHHHHHHHhccccceEEEEEccc-----cccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          293 SPFVRQISRNYWAYASFAFVLWRE-----EESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~-----~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .|.+..++.++.+.+.|+.+...+     .....++++|+|.+.||+++|+++ ....-+.| .+.+.|.+||++
T Consensus        50 ~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~~~~~~-~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           50 EPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTP-QKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSS-CEEEGGGG-GCHHHHHHHHHC
T ss_pred             hHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCEEEEEcCC-ceEecccc-CCHHHHHHHHhc
Confidence            456666777776677788877531     123678999999999999999862 22222223 466788888865

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=96.60  E-value=0.0059  Score=50.50  Aligned_cols=96  Identities=10%  Similarity=0.136  Sum_probs=56.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+...++.. .++++++ |+++.|   ....+.+..++..+  .+.|+.+...  +...++++|+|.+.|++++|
T Consensus        25 l~~~~~~~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~   99 (133)
T 3cxg_A           25 LKNTGSLNQVFSST-QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVD--IHPKLNDQHNIKALPTFEFY   99 (133)
T ss_dssp             CCCTTHHHHHHTC--CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             ecChhHHHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEecc--chHHHHHhcCCCCCCEEEEE
Confidence            55434355555433 2345555 555422   12345555555444  3455555432  24779999999999999999


Q ss_pred             c--CCCc-ceeEecCCCChhHHHHHHHhh
Q 014549          338 K--DPGV-KPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k--~~~~-~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +  ++.. ....+.|. +.+.|.++|++.
T Consensus       100 ~~~~g~g~~~~~~~G~-~~~~l~~~l~~~  127 (133)
T 3cxg_A          100 FNLNNEWVLVHTVEGA-NQNDIEKAFQKY  127 (133)
T ss_dssp             EEETTEEEEEEEEESC-CHHHHHHHHHHH
T ss_pred             EecCCCeEEEEEEcCC-CHHHHHHHHHHH
Confidence            6  4432 23345676 788999999874

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.59  E-value=0.013  Score=47.60  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             cccchhhhhhhhhc-CCCceEEEE-EecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKT-GPHKVKVIF-FSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~-~~~~~~vl~-f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+.++..+... ..++++++. +++.+   ....+.+..++..+. .+.|+.+...  +...++++|+|.+.|++++
T Consensus        21 l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d--~~~~l~~~~~v~~~Pt~~~   97 (124)
T 1xfl_A           21 CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTD--ELKSVASDWAIQAMPTFMF   97 (124)
T ss_dssp             ESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETT--TSHHHHHHTTCCSSSEEEE
T ss_pred             eCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECc--cCHHHHHHcCCCccCEEEE
Confidence            43333344444432 123455554 44322   123456666777764 4666666532  2478999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      |+++. ....+.| .+.+.|.++|++.
T Consensus        98 ~~~G~-~~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           98 LKEGK-ILDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             EETTE-EEEEEES-CCHHHHHHHHHHH
T ss_pred             EECCE-EEEEEeC-CCHHHHHHHHHHh
Confidence            97543 3334567 5888899998763

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.58  E-value=0.0082  Score=50.79  Aligned_cols=84  Identities=15%  Similarity=0.222  Sum_probs=58.2

Q ss_pred             CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce--------e
Q 014549          278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--------V  345 (423)
Q Consensus       278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~--------~  345 (423)
                      ++++++ |+++.|   ....|.+..++.+|.+.+.|+.|...+  .++++++|+|.+.||+++|+++....        .
T Consensus        23 ~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~~v~~~~g~~~~~  100 (149)
T 3gix_A           23 EKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHT  100 (149)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCSSSEEEEEETTEEEEEECSSSCCS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCc--CHHHHHHcCCCccCeEEEEECCeEEEeecCCCCCC
Confidence            345555 555432   223566777888887767777776432  36799999999999999998754331        2


Q ss_pred             EecC-CCChhHHHHHHHhh
Q 014549          346 VYYG-SFNNSRLSEVMEQN  363 (423)
Q Consensus       346 ~y~g-~~~~~~l~~fi~~~  363 (423)
                      .+.| ..+.+.|.++|+..
T Consensus       101 ~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A          101 KFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             CEESCCSSHHHHHHHHHHH
T ss_pred             eEeeecCCHHHHHHHHHHH
Confidence            3467 67888999998874

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=96.56  E-value=0.007  Score=50.78  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=55.5

Q ss_pred             CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeE-------
Q 014549          278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-------  346 (423)
Q Consensus       278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~-------  346 (423)
                      ++++++ |+++.+   ....|.+..++.++.+.+.|+.|...+  .++++++|+|.+.||+++|+++......       
T Consensus        23 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~  100 (142)
T 1qgv_A           23 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN  100 (142)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTSSCSCSSCEEEEEETTEEEEEECC-----
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc--CHHHHHHcCCCCCCEEEEEECCcEEEEecCCCCcc
Confidence            345555 555422   223567777888886677777776443  3579999999999999999865433221       


Q ss_pred             -ecCCCC-hhHHHHHHHhh
Q 014549          347 -YYGSFN-NSRLSEVMEQN  363 (423)
Q Consensus       347 -y~g~~~-~~~l~~fi~~~  363 (423)
                       ..|..+ .+.|.++|++.
T Consensus       101 ~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A          101 KINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             -CCSCCSCHHHHHHHHHHH
T ss_pred             eeeeecCcHHHHHHHHHHH
Confidence             235454 67888888773

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.54  E-value=0.029  Score=57.57  Aligned_cols=176  Identities=14%  Similarity=0.072  Sum_probs=106.3

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      .+++-+.++.+.|..|..+....++++.. .+.+.+-..+ +   .               -...|++.+.++|...   
T Consensus        18 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-s~~i~~~~~~-~---~---------------~~~~p~~~~~~~~~~~---   74 (521)
T 1hyu_A           18 TKPVELIATLDDSAKSAEIKELLAEIAEL-SDKVTFKEDN-T---L---------------PVRKPSFLITNPGSQQ---   74 (521)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEECT-T---S---------------SSCSSEEEEECTTCCC---
T ss_pred             CCCEEEEEEeCCCcchHHHHHHHHHHHHh-CCceEEEEcC-C---c---------------ccCCCEEEEecCCCcc---
Confidence            45666677777799998888777777654 4445542211 1   0               0267999999887543   


Q ss_pred             cccccCCCCHHHHHHHHHHhh--ccCCceeecccchhhhhhhhhcCCCceEEEEEec-CCCCC--chHHHHHHHhccccc
Q 014549          233 MTRFEGELSVDAVTDWFATAI--LKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK-TGERA--SPFVRQISRNYWAYA  307 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi~~~~--~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~-~~~~~--~~~~~~~a~~~~~~~  307 (423)
                      ...|.|-..=..+..|+...+  ...|..  ++ ++..+.. ........+++|++. |..|.  .|.+..++..+. .+
T Consensus        75 ~i~f~g~p~g~e~~s~~~~l~~~~~~~~~--~~-~~~~~~i-~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v  149 (521)
T 1hyu_A           75 GPRFAGSPLGHEFTSLVLALLWTGGHPSK--EA-QSLLEQI-RDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RI  149 (521)
T ss_dssp             SCEEESCCCGGGHHHHHHHHHHHTTCCCC--SC-HHHHHHH-HHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TE
T ss_pred             eEEEeccCcchhHHHHHHHHHhhcCCCCC--CC-HHHHHHH-HhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ce
Confidence            578988766666666665431  122222  22 2223333 222212234445554 33343  456666777764 66


Q ss_pred             eEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       308 ~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+..+...  +.++++++|+|.+.|++++  + + +.+ ..|..+.+.|.+|+...
T Consensus       150 ~~~~vd~~--~~~~~~~~~~i~svPt~~i--~-g-~~~-~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          150 KHTAIDGG--TFQNEITERNVMGVPAVFV--N-G-KEF-GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EEEEEETT--TCHHHHHHTTCCSSSEEEE--T-T-EEE-EESCCCHHHHHHHHCCS
T ss_pred             EEEEEech--hhHHHHHHhCCCccCEEEE--C-C-EEE-ecCCCCHHHHHHHHhhc
Confidence            66666533  2478999999999999977  2 2 222 35888889999998763

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.51  E-value=0.0072  Score=47.66  Aligned_cols=97  Identities=20%  Similarity=0.250  Sum_probs=59.0

Q ss_pred             cccchhhhhhhhhc-CCCceEEEEE-ecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKT-GPHKVKVIFF-SKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~-~~~~~~vl~f-~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+.+++.+... ..+++++++| ++.+ .|  ..+.+..++..+. .+.|..+...  +...++++|++.+.|++++
T Consensus         9 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~--~~~~~~~~~~v~~~Pt~~~   85 (113)
T 1ti3_A            9 CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVD--ELKAVAEEWNVEAMPTFIF   85 (113)
T ss_dssp             ECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETT--TCHHHHHHHHCSSTTEEEE
T ss_pred             eccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEcc--ccHHHHHhCCCCcccEEEE
Confidence            43433345555442 2345655554 4322 11  2455566776664 4666666533  2467999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      |+++ .....+.| .+.+.|.++|++.
T Consensus        86 ~~~G-~~~~~~~g-~~~~~l~~~l~~~  110 (113)
T 1ti3_A           86 LKDG-KLVDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             EETT-EEEEEEEC-CCTTHHHHHHHHH
T ss_pred             EeCC-EEEEEEec-CCHHHHHHHHHHh
Confidence            9744 33334567 6788899998863

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=96.49  E-value=0.0035  Score=54.75  Aligned_cols=55  Identities=13%  Similarity=0.076  Sum_probs=40.0

Q ss_pred             CCcE-EEEEecCCCcccc-ccHHHHHHHHHHhhcc-ceE-EEEEcccchhhhHHHhhCC
Q 014549          153 SKPW-LIQVYSDGSYLCG-QFSGAWKTIAALLEGI-ANT-GMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~-lV~FYapwC~~C~-~~~p~~~~~A~~l~~~-~~~-~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ++++ |+.|++.||+.|. .-.|.+.+++++++.. +.+ |.|.++........+++.+
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~  101 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHK  101 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhC
Confidence            4444 4455599999999 5889999999998765 444 4588875445566778877

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=95.47  E-value=0.00046  Score=53.82  Aligned_cols=68  Identities=15%  Similarity=0.240  Sum_probs=47.9

Q ss_pred             CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+.+..++..+.+.+.|+.+...  +...++++|++.+.|++++|+++ .....+.|..+.+.|.+||++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~~~~~~l~~~l~~  104 (106)
T 2yj7_A           37 IAPIIEELAKEYEGKVKVVKVNVD--ENPNTAAQYGIRSIPTLLLFKNG-QVVDRLVGAQPKEALKERIDK  104 (106)
Confidence            456666677776655666655432  23679999999999999999644 333456788888888888875

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=96.44  E-value=0.0047  Score=56.02  Aligned_cols=92  Identities=8%  Similarity=0.060  Sum_probs=59.6

Q ss_pred             hhhhhhhcCCCceEEE-EEecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcc
Q 014549          268 GKNFLAKTGPHKVKVI-FFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl-~f~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~  343 (423)
                      +...+......+++|+ |+++.+ .|  ..|.+..+|..|. .+.|+.+...   ...++.+|+|.++||+++|+++. .
T Consensus       110 f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~---~~~l~~~~~i~~~PTl~~~~~G~-~  184 (217)
T 2trc_P          110 FLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS---NTGAGDRFSSDVLPTLLVYKGGE-L  184 (217)
T ss_dssp             HHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH---HHTCSTTSCGGGCSEEEEEETTE-E
T ss_pred             HHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC---cHHHHHHCCCCCCCEEEEEECCE-E
Confidence            4444543322345544 555432 22  3566777888774 6788888654   45688999999999999998543 3


Q ss_pred             eeEecCCCC-------hhHHHHHHHhhc
Q 014549          344 PVVYYGSFN-------NSRLSEVMEQNK  364 (423)
Q Consensus       344 ~~~y~g~~~-------~~~l~~fi~~~~  364 (423)
                      ...+.|..+       .+.|..||.++.
T Consensus       185 v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          185 ISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            344556544       488999998864

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.42  E-value=0.0011  Score=58.66  Aligned_cols=40  Identities=10%  Similarity=0.125  Sum_probs=34.9

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~  194 (423)
                      +++.+|+|++.||+||+++.|.++++.+.+  .+.|..+...
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~--~v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA--GTDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH--TSCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh--CCeEEEEecc
Confidence            578999999999999999999999999988  3667777764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.41  E-value=0.017  Score=45.78  Aligned_cols=97  Identities=18%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             cccchhhhhhhhhc-CCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKT-GPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~-~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+.+++.+... ..++++++ |+++.+   ....+.+..++..+. .+.|..+....  ...++++|++.+.|++++
T Consensus        11 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~   87 (118)
T 2vm1_A           11 CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDE--LKDVAEAYNVEAMPTFLF   87 (118)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--SHHHHHHTTCCSBSEEEE
T ss_pred             ecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEccc--CHHHHHHcCCCcCcEEEE
Confidence            44333345555431 11335455 444322   113455666777765 56677765432  367999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      |+++. ....+.| .+.+.|.++|.+.
T Consensus        88 ~~~g~-~~~~~~g-~~~~~l~~~l~~~  112 (118)
T 2vm1_A           88 IKDGE-KVDSVVG-GRKDDIHTKIVAL  112 (118)
T ss_dssp             EETTE-EEEEEES-CCHHHHHHHHHHH
T ss_pred             EeCCe-EEEEecC-CCHHHHHHHHHHH
Confidence            97543 3334567 5788899998874

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=96.37  E-value=0.0079  Score=54.74  Aligned_cols=42  Identities=12%  Similarity=0.004  Sum_probs=35.0

Q ss_pred             CcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc
Q 014549          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD  195 (423)
Q Consensus       154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~  195 (423)
                      .++|+.|+++||+.|..-.|.+.++.++++.. +.+..|.++.
T Consensus        33 ~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~   75 (224)
T 1prx_A           33 WGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDS   75 (224)
T ss_dssp             EEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSC
T ss_pred             eEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35666778999999999999999999999764 6888888874

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.36  E-value=0.0085  Score=49.50  Aligned_cols=68  Identities=22%  Similarity=0.343  Sum_probs=49.1

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhcc
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL  365 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~  365 (423)
                      .+.+..++..+ ..+.|+.+...+  ...++++|+|.+.|++++|+++ .....+.|. +.+.|.++|.+..-
T Consensus        65 ~~~l~~l~~~~-~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A           65 APYYIELSENY-PSLMFLVIDVDE--LSDFSASWEIKATPTFFFLRDG-QQVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             HHHHHHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCEESEEEEEETT-EEEEEEESC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCEEEEEeCcc--cHHHHHHcCCCcccEEEEEcCC-eEEEEEeCC-CHHHHHHHHHHHhc
Confidence            45666677776 356777775432  4789999999999999999644 333445777 78899999987543

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=96.35  E-value=0.0067  Score=49.73  Aligned_cols=70  Identities=9%  Similarity=0.089  Sum_probs=48.6

Q ss_pred             chHHH--HHHHhccccceEEEEEccc-cccHHHHhhcCC---CCCCeEEEecCCCcceeEecC-------CCChhHHHHH
Q 014549          293 SPFVR--QISRNYWAYASFAFVLWRE-EESSIWWNTFEV---ESAPAIVFLKDPGVKPVVYYG-------SFNNSRLSEV  359 (423)
Q Consensus       293 ~~~~~--~~a~~~~~~~~f~~v~~~~-~~~~~l~~~f~v---~~~Ptl~lfk~~~~~~~~y~g-------~~~~~~l~~f  359 (423)
                      .+.+.  .++..+.+.+.++.+...+ .....++++|+|   .+.|++++|...+.....+.|       .++.+.|.+|
T Consensus        48 ~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~  127 (133)
T 3fk8_A           48 DKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDF  127 (133)
T ss_dssp             HHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHH
T ss_pred             HHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHH
Confidence            45555  5666665667777776532 224789999999   999999999444443334455       4678889999


Q ss_pred             HHh
Q 014549          360 MEQ  362 (423)
Q Consensus       360 i~~  362 (423)
                      +++
T Consensus       128 l~~  130 (133)
T 3fk8_A          128 FAK  130 (133)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.33  E-value=0.01  Score=49.21  Aligned_cols=95  Identities=11%  Similarity=0.118  Sum_probs=57.8

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.++ +.+.+.....++++|+ |+++.+   ....|.+..++.+|. .+.|+.+...+.     .++|+|.+.||+++|
T Consensus        15 i~~~~-~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~-----~~~~~i~~~Pt~~~~   87 (135)
T 2dbc_A           15 ISGNQ-YVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSC-----IEHYHDNCLPTIFVY   87 (135)
T ss_dssp             CCHHH-HHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSS-----CSSCCSSCCSEEEEE
T ss_pred             cCHHH-HHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcC-----cccCCCCCCCEEEEE
Confidence            44444 3444433323345555 444422   224566777887773 567777654332     278999999999999


Q ss_pred             cCCCcceeEecCCC-------ChhHHHHHHHhhc
Q 014549          338 KDPGVKPVVYYGSF-------NNSRLSEVMEQNK  364 (423)
Q Consensus       338 k~~~~~~~~y~g~~-------~~~~l~~fi~~~~  364 (423)
                      +++... ..+.|..       +.+.|.++|.++.
T Consensus        88 ~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           88 KNGQIE-GKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             SSSSCS-EEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             ECCEEE-EEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            865432 3344543       6788999999864

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=96.33  E-value=0.0086  Score=54.92  Aligned_cols=97  Identities=5%  Similarity=-0.112  Sum_probs=63.0

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHh------hC--CCC------------c
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE------RK--PIG------------Q  210 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~------~~--~~~------------~  210 (423)
                      .+++++.|| ++||+.|..-.|.+.++.++++.. +.+..|.++........++      ++  ++.            .
T Consensus        29 k~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~  108 (233)
T 2v2g_A           29 NSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAV  108 (233)
T ss_dssp             SSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHH
T ss_pred             CCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHH
Confidence            347788888 899999999999999999998764 7888888874332222333      22  221            2


Q ss_pred             ccccc------------CccEEEEeCCCCCCCCCccccc----CCCCHHHHHHHHHHh
Q 014549          211 IFFRR------------GLPSLVAFPPGCKSSDCMTRFE----GELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~------------~~Pti~~f~~g~~~~~~~~~y~----G~~~~~~l~~fi~~~  252 (423)
                      .|++.            ..|++.++-+....   ...+.    ..++.++|++.+...
T Consensus       109 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I---~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          109 KLGMVDPDERTSTGMPLTCRAVFIIGPDKKL---KLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             HTTCEEEEEECTTCCEEECEEEEEECTTSBE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCcCcccccCCCcccccceEEEECCCCEE---EEEEecCCCCCCCHHHHHHHHHHH
Confidence            23343            46898888655432   11221    246788898888654

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.15  E-value=0.0034  Score=47.61  Aligned_cols=80  Identities=9%  Similarity=-0.036  Sum_probs=46.6

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcc
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT  234 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~  234 (423)
                      -++.|++|||++|++..+.+++..    -...+..||..++. ...++.+..|.. .+.+.++|++.+  +|..      
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~~~----i~~~~~~vd~~~~~~~~~el~~~~g~~-~~~~~~vP~i~i--~g~~------   71 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEENN----IAFDETIIDDYAQRSKFYDEMNQSGKV-IFPISTVPQIFI--DDEH------   71 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTT----CCCEEEECCSHHHHHHHHHHHHTTTCC-SSCCCSSCEEEE--TTEE------
T ss_pred             EEEEEEcCCChhHHHHHHHHHHcC----CCceEEEeecCCChhHHHHHHHHhCCC-CCCCCccCEEEE--CCEE------
Confidence            467788999999999887765432    12344445544321 124577777720 011389999854  5532      


Q ss_pred             cccCCCCHHHHHHHHHHh
Q 014549          235 RFEGELSVDAVTDWFATA  252 (423)
Q Consensus       235 ~y~G~~~~~~l~~fi~~~  252 (423)
                        -|  ..+++.+++.+.
T Consensus        72 --i~--g~~~i~~~~~~~   85 (89)
T 3msz_A           72 --IG--GFTELKANADKI   85 (89)
T ss_dssp             --EE--SHHHHHHTHHHH
T ss_pred             --Ee--ChHHHHHHHHHH
Confidence              23  346677766554

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=96.15  E-value=0.0061  Score=49.51  Aligned_cols=97  Identities=19%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             cccchhhhhhhhhc-CCCceEEEEE-ec-C--CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKT-GPHKVKVIFF-SK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~-~~~~~~vl~f-~~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+.++..+... ..+++++++| ++ +  +....+.+..++..+. .+.|+.+...  +...++++|+|.+.|++++
T Consensus        19 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~--~~~~~~~~~~v~~~Pt~~~   95 (130)
T 1wmj_A           19 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVD--ELKEVAEKYNVEAMPTFLF   95 (130)
T ss_dssp             CSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTT--TSGGGHHHHTCCSSCCCCB
T ss_pred             cCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEecc--chHHHHHHcCCCccceEEE
Confidence            43333344445432 2234555544 43 2  3345677787887775 4666666432  2367999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      |+++. ....+.| .+.+.|.++|++.
T Consensus        96 ~~~g~-~~~~~~g-~~~~~l~~~l~~~  120 (130)
T 1wmj_A           96 IKDGA-EADKVVG-ARKDDLQNTIVKH  120 (130)
T ss_dssp             CTTTT-CCBCCCT-TCTTTHHHHHHHH
T ss_pred             EeCCe-EEEEEeC-CCHHHHHHHHHHH
Confidence            96543 3234466 5778899999874

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.06  E-value=0.012  Score=47.32  Aligned_cols=70  Identities=20%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCC---CcceeEecCCCChhHHHHHHHhhccc
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP---GVKPVVYYGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~---~~~~~~y~g~~~~~~l~~fi~~~~~~  366 (423)
                      .+.+..++..+ ..+.|+.+...+  ...++++|+|.+.|++++|+++   +..-..+.|..+ ..|.+.+.++.-+
T Consensus        42 ~~~l~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~~~  114 (118)
T 2f51_A           42 GQILPSIAEAN-KDVTFIKVDVDK--NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKFKHH  114 (118)
T ss_dssp             HHHHHHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHC-CCeEEEEEECCC--CHHHHHhcCCCCCCEEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHhhhc
Confidence            45566677777 667777776432  3679999999999999999762   222234567654 5699999887644

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=95.94  E-value=0.0021  Score=53.32  Aligned_cols=70  Identities=11%  Similarity=0.250  Sum_probs=46.8

Q ss_pred             CCcccccCCCCcEEEEEecCCCcccccc-HHHHHHHHHHhhccceEEEEEcccch----hhhHHHhhCCCCccccccCcc
Q 014549          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQF-SGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQIFFRRGLP  218 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~-~p~~~~~A~~l~~~~~~~~Vdc~~~~----~~~~l~~~~~~~~~~~i~~~P  218 (423)
                      +.+++++...+  ++.|+.|||++|++. .+.+++...   ..+.+-.+|.+.+.    ....|.+.+|      +.++|
T Consensus        28 ~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~---~~i~~~~vdvd~~~~~~~~~~~L~~~~g------~~tVP   96 (129)
T 3ctg_A           28 AHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNV---PKSKALVLELDEMSNGSEIQDALEEISG------QKTVP   96 (129)
T ss_dssp             HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHS------CCSSC
T ss_pred             HHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCc---cCCCcEEEEccccCCHHHHHHHHHHHhC------CCCCC
Confidence            34555565444  678899999999988 777765431   12567777777442    1245777778      88999


Q ss_pred             EEEEeCCC
Q 014549          219 SLVAFPPG  226 (423)
Q Consensus       219 ti~~f~~g  226 (423)
                      +|  |.+|
T Consensus        97 ~v--fi~g  102 (129)
T 3ctg_A           97 NV--YING  102 (129)
T ss_dssp             EE--EETT
T ss_pred             EE--EECC
Confidence            96  4555

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=95.83  E-value=0.015  Score=47.31  Aligned_cols=56  Identities=13%  Similarity=0.021  Sum_probs=43.6

Q ss_pred             ceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       307 ~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +.+..|.+.+.....++.+|+|.+.||+++|+++ ..-....|.++.+.|..|+++.
T Consensus        53 ~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G-~ev~Ri~G~~~~~~f~~~L~~~  108 (116)
T 3dml_A           53 APVQRLQMRDPLPPGLELARPVTFTPTFVLMAGD-VESGRLEGYPGEDFFWPMLARL  108 (116)
T ss_dssp             SCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETT-EEEEEEECCCCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCchhHHHHCCCCCCCEEEEEECC-EEEeeecCCCCHHHHHHHHHHH
Confidence            5677777665444678999999999999999954 4444568999999999999873

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=95.76  E-value=0.022  Score=52.54  Aligned_cols=92  Identities=9%  Similarity=0.079  Sum_probs=58.5

Q ss_pred             hhhhhhhcCCCceEEE-EEecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcc
Q 014549          268 GKNFLAKTGPHKVKVI-FFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl-~f~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~  343 (423)
                      +...+.....++++|+ |+++.+ .|  ..|.+..+|..|.. +.|+.|....   ..++.+|+|.++||+++|+++...
T Consensus       123 f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~---~~l~~~~~I~~~PTll~~~~G~~v  198 (245)
T 1a0r_P          123 FLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN---TGAGDRFSSDVLPTLLVYKGGELL  198 (245)
T ss_dssp             HHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH---HCCTTSSCTTTCSEEEEEETTEEE
T ss_pred             HHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc---HHHHHHCCCCCCCEEEEEECCEEE
Confidence            4444433222445444 555422 22  45777778888854 7888876433   458899999999999999865332


Q ss_pred             eeEecCC-------CChhHHHHHHHhhc
Q 014549          344 PVVYYGS-------FNNSRLSEVMEQNK  364 (423)
Q Consensus       344 ~~~y~g~-------~~~~~l~~fi~~~~  364 (423)
                       ..+.|.       ++.+.|..||.++.
T Consensus       199 -~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          199 -SNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             -EEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             -EEEeCCcccccccccHHHHHHHHHHcC
Confidence             223332       45678999999864

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=94.69  E-value=0.0018  Score=53.00  Aligned_cols=71  Identities=24%  Similarity=0.224  Sum_probs=47.5

Q ss_pred             CchHH---HHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecC-CCcc--eeEecCCCChhHHHHHHHh
Q 014549          292 ASPFV---RQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVK--PVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       292 ~~~~~---~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~-~~~~--~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+.+   ..++..+...+.++.+...+.+...++++|+|.++|++++|.. ++..  ...+.|..+.+.|.++|++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~  113 (130)
T 2lst_A           37 MNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQ  113 (130)
Confidence            34555   5555555555566666543333467999999999999999942 2333  3346788888888888876

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=95.65  E-value=0.041  Score=44.34  Aligned_cols=67  Identities=22%  Similarity=0.338  Sum_probs=49.0

Q ss_pred             hHHHHHHHhccccceEEEEEccc---------------------cccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549          294 PFVRQISRNYWAYASFAFVLWRE---------------------EESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~---------------------~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~  352 (423)
                      +.+..++.++. .+.+..+...+                     .....+++.|++.+.|+++++..++... .+.|..+
T Consensus        45 ~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~  122 (136)
T 1zzo_A           45 PVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMS  122 (136)
T ss_dssp             HHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCC
T ss_pred             HHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCC
Confidence            44555666665 67777776533                     1135688999999999999996555444 6789889


Q ss_pred             hhHHHHHHHh
Q 014549          353 NSRLSEVMEQ  362 (423)
Q Consensus       353 ~~~l~~fi~~  362 (423)
                      .+.|.++|++
T Consensus       123 ~~~l~~~l~~  132 (136)
T 1zzo_A          123 QDELTRRVTA  132 (136)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=95.54  E-value=0.032  Score=45.68  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=48.2

Q ss_pred             hHHHHHHHhcc-ccceEEEEEccc-----------------------cccHHHHhhcCCCCCCeEEEecCCCcceeEecC
Q 014549          294 PFVRQISRNYW-AYASFAFVLWRE-----------------------EESSIWWNTFEVESAPAIVFLKDPGVKPVVYYG  349 (423)
Q Consensus       294 ~~~~~~a~~~~-~~~~f~~v~~~~-----------------------~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g  349 (423)
                      +.+..++.+|. ..+.+..+....                       .....+++.|++.+.|+++++...+.....+.|
T Consensus        54 ~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g  133 (145)
T 3erw_A           54 PQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIG  133 (145)
T ss_dssp             HHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEEES
T ss_pred             HHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEcC
Confidence            44555666765 456666665432                       113578999999999999999655555556789


Q ss_pred             CCChhHHHHHHH
Q 014549          350 SFNNSRLSEVME  361 (423)
Q Consensus       350 ~~~~~~l~~fi~  361 (423)
                      ..+.+.|.++|+
T Consensus       134 ~~~~~~l~~~l~  145 (145)
T 3erw_A          134 PMTAEQLKEWTE  145 (145)
T ss_dssp             CCCHHHHHHHHC
T ss_pred             CcCHHHHHHhhC
Confidence            889999988873

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=95.53  E-value=0.0058  Score=61.78  Aligned_cols=90  Identities=10%  Similarity=0.079  Sum_probs=55.6

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccc--------cceEEEEEccccccHHHHhhcCCCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWA--------YASFAFVLWREEESSIWWNTFEVES  330 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~~~~~l~~~f~v~~  330 (423)
                      ++.++ ++..+.......++|.|+++.+   ....|.+..++..|..        .+.|+.|....  ..+++++|+|.+
T Consensus        28 Lt~~~-F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~--~~~la~~y~V~~  104 (470)
T 3qcp_A           28 LSGDD-FSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS--EVDLCRKYDINF  104 (470)
T ss_dssp             CSCSC-GGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT--CHHHHHHTTCCS
T ss_pred             CCHHH-HHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC--CHHHHHHcCCCc
Confidence            55555 4455543211225555666532   2345777778888762        36677765332  378999999999


Q ss_pred             CCeEEEecCCC-cceeEecCCCChh
Q 014549          331 APAIVFLKDPG-VKPVVYYGSFNNS  354 (423)
Q Consensus       331 ~Ptl~lfk~~~-~~~~~y~g~~~~~  354 (423)
                      +||+++|++++ ..+..|.|..+.+
T Consensus       105 ~PTlilf~~gg~~~~~~y~G~r~~e  129 (470)
T 3qcp_A          105 VPRLFFFYPRDSCRSNEECGTSSLE  129 (470)
T ss_dssp             SCEEEEEEESSCCCTTSCCCCCCEE
T ss_pred             cCeEEEEECCCceEEEEeeCCCCHH
Confidence            99999997654 3445566655443

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=95.52  E-value=0.014  Score=52.85  Aligned_cols=95  Identities=7%  Similarity=-0.071  Sum_probs=60.1

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHh-------hCCCC------------ccccc
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE-------RKPIG------------QIFFR  214 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~-------~~~~~------------~~~~i  214 (423)
                      .+|+.|+++||+.|..-.|.+.++.++++.. +.+..|.++.........+       +.++.            ..|++
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            4555668999999999999999999998764 6888888874322222222       22221            22334


Q ss_pred             c------------CccEEEEeCCCCCCCCCccccc----CCCCHHHHHHHHHHh
Q 014549          215 R------------GLPSLVAFPPGCKSSDCMTRFE----GELSVDAVTDWFATA  252 (423)
Q Consensus       215 ~------------~~Pti~~f~~g~~~~~~~~~y~----G~~~~~~l~~fi~~~  252 (423)
                      .            ..|++.++-+.+..   ...+.    ..++.++|.+.+...
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I---~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKI---KATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBE---EEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEE---EEEEecCCCCCCCHHHHHHHHHHH
Confidence            2            36888888654432   11221    357889998888654

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=95.51  E-value=0.051  Score=43.92  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=48.8

Q ss_pred             hHHHHHHHhccccceEEEEEcccc--------------------ccHHHHhhcCCCCCCeEEEecCCCcceeEec---CC
Q 014549          294 PFVRQISRNYWAYASFAFVLWREE--------------------ESSIWWNTFEVESAPAIVFLKDPGVKPVVYY---GS  350 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~~--------------------~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~---g~  350 (423)
                      +.+..++.++. .+.+..+...+.                    ....+++.|++.+.|+++++..++... .+.   |.
T Consensus        44 ~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~  121 (136)
T 1lu4_A           44 PSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAA  121 (136)
T ss_dssp             HHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSC
T ss_pred             HHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCc
Confidence            44555666665 667777765431                    135688999999999999996555444 677   88


Q ss_pred             CChhHHHHHHHh
Q 014549          351 FNNSRLSEVMEQ  362 (423)
Q Consensus       351 ~~~~~l~~fi~~  362 (423)
                      .+.+.|.++|++
T Consensus       122 ~~~~~l~~~l~~  133 (136)
T 1lu4_A          122 MSQDELSGRVAA  133 (136)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            899999999986

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=95.47  E-value=0.053  Score=44.45  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             hHHHHHHHhccccceEEEEEccc-------------------------cccHHHHhhcCCCCCCeEEEecCCCcceeEec
Q 014549          294 PFVRQISRNYWAYASFAFVLWRE-------------------------EESSIWWNTFEVESAPAIVFLKDPGVKPVVYY  348 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~-------------------------~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~  348 (423)
                      +.+..++.+|.+.+.+..+....                         .....+++.|++.+.|+++++..++.....+.
T Consensus        49 ~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~  128 (148)
T 2b5x_A           49 PQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQA  128 (148)
T ss_dssp             HHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEE
T ss_pred             HHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEec
Confidence            44455666666557777776432                         12357899999999999999955555445567


Q ss_pred             CCCChhHHHHHHHh
Q 014549          349 GSFNNSRLSEVMEQ  362 (423)
Q Consensus       349 g~~~~~~l~~fi~~  362 (423)
                      |..+.+.|.++|++
T Consensus       129 g~~~~~~l~~~l~~  142 (148)
T 2b5x_A          129 GGSGMKMLEKRVNR  142 (148)
T ss_dssp             SCSTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            88888889988876

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=95.41  E-value=0.011  Score=47.55  Aligned_cols=66  Identities=9%  Similarity=0.210  Sum_probs=42.7

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch---hh-hHHHhhCCCCccccccCccEE
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR---LA-THLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~---~~-~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      .+++.+++++  ++.|.+|||++|++..+.+++..      +.+-.+|.+...   .. ..+.+..|      ..++|++
T Consensus         9 ~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~------i~~~~~dvd~~~~~~~~~~~l~~~~g------~~tvP~v   74 (114)
T 3h8q_A            9 HLVGLIERSR--VVIFSKSYCPHSTRVKELFSSLG------VECNVLELDQVDDGARVQEVLSEITN------QKTVPNI   74 (114)
T ss_dssp             HHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEETTTSTTHHHHHHHHHHHHS------CCSSCEE
T ss_pred             HHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHcC------CCcEEEEecCCCChHHHHHHHHHHhC------CCccCEE
Confidence            3455555554  34499999999999888877642      456677776321   11 23555666      7799998


Q ss_pred             EEeCCC
Q 014549          221 VAFPPG  226 (423)
Q Consensus       221 ~~f~~g  226 (423)
                      .+  +|
T Consensus        75 fi--~g   78 (114)
T 3h8q_A           75 FV--NK   78 (114)
T ss_dssp             EE--TT
T ss_pred             EE--CC
Confidence            55  55

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=95.19  E-value=0.045  Score=39.77  Aligned_cols=70  Identities=10%  Similarity=0.152  Sum_probs=46.5

Q ss_pred             EEEEEecC-CCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCC-ChhHH
Q 014549          281 KVIFFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRL  356 (423)
Q Consensus       281 ~vl~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~-~~~~l  356 (423)
                      .|.|+++. ..|  ..+.+..++.++...+.+..+.     ..+++++|+|.+.|++++  ++  +.+. .|.. +.+.|
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~--~G--~~~~-~G~~~~~~~l   72 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV--DG--ELKI-MGRVASKEEI   72 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE--TT--EEEE-CSSCCCHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE--CC--EEEE-cCCCCCHHHH
Confidence            45566642 233  3456677777776556665553     467899999999999988  22  3333 3877 88888


Q ss_pred             HHHH
Q 014549          357 SEVM  360 (423)
Q Consensus       357 ~~fi  360 (423)
                      .+|+
T Consensus        73 ~~~l   76 (77)
T 1ilo_A           73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            8775

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=95.05  E-value=0.0091  Score=52.88  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             CCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~  194 (423)
                      .++.+|+|++.||+||+++.|.+   +++.+.+.+.++|..++..
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~   65 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVE   65 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECS
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecc
Confidence            47899999999999999999986   6888888766777666654

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=95.03  E-value=0.15  Score=43.84  Aligned_cols=43  Identities=7%  Similarity=0.199  Sum_probs=34.7

Q ss_pred             CCCcEEEEEecCCCc-cccccHHHHHHHHHHhhcc---ceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEGI---ANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~-~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~  194 (423)
                      .+++++|.||.+||+ .|....+.+.++.+.++..   +.+..|.++
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            468999999999996 6999999999888877532   567777765

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=94.71  E-value=0.1  Score=43.28  Aligned_cols=70  Identities=14%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             hHHHHHHHhccc-cceEEEEEccccc--------------------cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549          294 PFVRQISRNYWA-YASFAFVLWREEE--------------------SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (423)
Q Consensus       294 ~~~~~~a~~~~~-~~~f~~v~~~~~~--------------------~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~  352 (423)
                      +.+..+...|.+ .+.+..|...+..                    ...+++.|++.+.|+++++...+.....+.|..+
T Consensus        46 ~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~  125 (151)
T 2f9s_A           46 PYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMT  125 (151)
T ss_dssp             HHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCC
T ss_pred             HHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEeCCCC
Confidence            344555666654 3666666543321                    2468899999999999999555555555678888


Q ss_pred             hhHHHHHHHhh
Q 014549          353 NSRLSEVMEQN  363 (423)
Q Consensus       353 ~~~l~~fi~~~  363 (423)
                      .+.|.++|+..
T Consensus       126 ~~~l~~~l~~l  136 (151)
T 2f9s_A          126 ESMIHDYMNLI  136 (151)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            89999999873

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=94.66  E-value=0.13  Score=42.44  Aligned_cols=71  Identities=10%  Similarity=0.236  Sum_probs=48.0

Q ss_pred             chHHHHHHHhccc-cceEEEEEccccc---------------------cHHHHhhcCCCCCCeEEEecCCCcceeEecCC
Q 014549          293 SPFVRQISRNYWA-YASFAFVLWREEE---------------------SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS  350 (423)
Q Consensus       293 ~~~~~~~a~~~~~-~~~f~~v~~~~~~---------------------~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~  350 (423)
                      .+.+..+...+.+ .+.+..|......                     ...+.+.|++.+.|+++++...+.....+.|.
T Consensus        49 ~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~  128 (152)
T 2lja_A           49 LPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTR  128 (152)
T ss_dssp             HHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCC
T ss_pred             hHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCC
Confidence            4555666666654 2556666543321                     12688999999999999997555444445677


Q ss_pred             CChhHHHHHHHhh
Q 014549          351 FNNSRLSEVMEQN  363 (423)
Q Consensus       351 ~~~~~l~~fi~~~  363 (423)
                      .+.+.|.++|+..
T Consensus       129 ~~~~~l~~~l~~~  141 (152)
T 2lja_A          129 PSDPKTAEKFNEL  141 (152)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            7888999998873

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=94.59  E-value=0.03  Score=48.93  Aligned_cols=57  Identities=9%  Similarity=0.018  Sum_probs=44.9

Q ss_pred             CCCCcEEEEEecCCCccccc-cHHHHHHHHHHhhcc-c-eEEEEEcccchhhhHHHhhCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQ-FSGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~-~~p~~~~~A~~l~~~-~-~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ....++|+.|++.||+.|.. -.|.|.+.+.+++.. + .+..|.++........+++.+
T Consensus        46 ~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~  105 (176)
T 4f82_A           46 AGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLH  105 (176)
T ss_dssp             TTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhC
Confidence            44445666777999999998 899999999999765 5 788898886555666788877

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=94.35  E-value=0.02  Score=47.21  Aligned_cols=69  Identities=16%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             CcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch---hh-hHHHhhCCCCccccccCccEE
Q 014549          145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR---LA-THLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~---~~-~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      +|+++++...  ++.|..+||++|++....+++.   ..-.+.+..+|.+.+.   .. ..+.+..|      ...+|+|
T Consensus         6 ~~~~ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~---~~~~v~~~~idid~~~d~~~~~~~l~~~~G------~~tVP~I   74 (127)
T 3l4n_A            6 EYSLILDLSP--IIIFSKSTCSYSKGMKELLENE---YQFIPNYYIIELDKHGHGEELQEYIKLVTG------RGTVPNL   74 (127)
T ss_dssp             HHHHHHTSCS--EEEEECTTCHHHHHHHHHHHHH---EEEESCCEEEEGGGSTTHHHHHHHHHHHHS------CCSSCEE
T ss_pred             HHHHHHccCC--EEEEEcCCCccHHHHHHHHHHh---cccCCCcEEEEecCCCCHHHHHHHHHHHcC------CCCcceE
Confidence            4666666555  6788999999999988777652   1001355666666321   11 22334446      6789997


Q ss_pred             EEeCCC
Q 014549          221 VAFPPG  226 (423)
Q Consensus       221 ~~f~~g  226 (423)
                      .  .+|
T Consensus        75 f--I~G   78 (127)
T 3l4n_A           75 L--VNG   78 (127)
T ss_dssp             E--ETT
T ss_pred             E--ECC
Confidence            4  455

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=94.09  E-value=0.12  Score=43.47  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=33.2

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCC--ChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~--~~~~l~~fi~~  362 (423)
                      ..++++|+|.++|+++++..++.....+ |..  +.+.+.++|+.
T Consensus       106 ~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~  149 (154)
T 2ju5_A          106 QELKAQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKS  149 (154)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHH
Confidence            4789999999999999995444444455 877  78888888876

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=94.05  E-value=0.051  Score=49.38  Aligned_cols=51  Identities=6%  Similarity=-0.076  Sum_probs=36.9

Q ss_pred             CCcEEEEEecCC-Ccccc-----ccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVYSDG-SYLCG-----QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FYapw-C~~C~-----~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      +++++|.||+.| |+.|.     .-.+.+.+.   +.| +.|..|+++........+++++
T Consensus        48 Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~g-v~VvgIS~Ds~~~~~~f~~~~g  104 (224)
T 3keb_A           48 HTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPH-LKLIVITVDSPSSLARARHEHG  104 (224)
T ss_dssp             TCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTT-SEEEEEESSCHHHHHHHHHHHC
T ss_pred             CCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCC-CEEEEEECCCHHHHHHHHHHcC
Confidence            568899999988 99999     666666665   433 5778888875444555667666

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=93.95  E-value=0.19  Score=41.59  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=35.6

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ..+++.|++...|+++++...+.....|.|..+.+.|.++|+..
T Consensus        96 ~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  139 (153)
T 2l5o_A           96 KAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA  139 (153)
T ss_dssp             CHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            56899999999999999965555555678888888999998873

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=93.91  E-value=0.23  Score=39.60  Aligned_cols=43  Identities=16%  Similarity=0.267  Sum_probs=35.2

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+.+.|++.+.|+++++...+.....+.|..+.+.|.++|++
T Consensus        94 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           94 GKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             hHHHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence            4689999999999999996555555567888888999998876

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=93.74  E-value=0.25  Score=40.85  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             HHHHhhcC--CCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFE--VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~--v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+++.|+  +.+.|+++++...+.....+.|..+.+.|.++|++
T Consensus        93 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  137 (151)
T 3raz_A           93 RNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKL  137 (151)
T ss_dssp             HHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHH
T ss_pred             HHHHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence            56788899  88999999996666666667899999999999887

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=93.61  E-value=0.046  Score=47.09  Aligned_cols=41  Identities=17%  Similarity=0.113  Sum_probs=33.1

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE  192 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd  192 (423)
                      +..+.+|+|++-.|+||+++.|.+.++.+.+.+.+++..+.
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~   60 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNH   60 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEe
Confidence            46789999999999999999999998888776555555444

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=93.33  E-value=0.35  Score=39.39  Aligned_cols=81  Identities=11%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             ceEEE-EEec-CCCC--CchHHHHHHHhc-ccc-ceEEEEEccccc-----------------------cHHHHhhcCCC
Q 014549          279 KVKVI-FFSK-TGER--ASPFVRQISRNY-WAY-ASFAFVLWREEE-----------------------SSIWWNTFEVE  329 (423)
Q Consensus       279 ~~~vl-~f~~-~~~~--~~~~~~~~a~~~-~~~-~~f~~v~~~~~~-----------------------~~~l~~~f~v~  329 (423)
                      +++++ |++. +..|  ..+.+..++.+| .+. +.+..|......                       ...+++.|++.
T Consensus        34 k~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  113 (148)
T 3fkf_A           34 RYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAIL  113 (148)
T ss_dssp             SEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC
T ss_pred             cEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCC
Confidence            35555 4443 2233  245556677777 443 666666544322                       34789999999


Q ss_pred             CCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          330 SAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       330 ~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +.|+++++...+...  +... +.+.|.++|++
T Consensus       114 ~~P~~~lid~~G~i~--~~~~-~~~~l~~~l~~  143 (148)
T 3fkf_A          114 TLPTNILLSPTGKIL--ARDI-QGEALTGKLKE  143 (148)
T ss_dssp             SSSEEEEECTTSBEE--EESC-CHHHHHHHHHH
T ss_pred             CcCEEEEECCCCeEE--EecC-CHHHHHHHHHH
Confidence            999999995444322  2222 67778888776

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=93.27  E-value=0.33  Score=40.10  Aligned_cols=45  Identities=13%  Similarity=0.138  Sum_probs=37.2

Q ss_pred             cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       319 ~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ...+++.|++.+.|+++++...+.....+.|..+.+.|.++|+++
T Consensus        98 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~  142 (154)
T 3ia1_A           98 PHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLA  142 (154)
T ss_dssp             HHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHT
T ss_pred             hHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhc
Confidence            467899999999999999865555555678888999999999884

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=93.08  E-value=0.49  Score=38.48  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=47.7

Q ss_pred             CceEEEE-Eec-CCCC--CchHHHHHHHhcccc-ceEEEEEccccccHH-------------------------HHhhcC
Q 014549          278 HKVKVIF-FSK-TGER--ASPFVRQISRNYWAY-ASFAFVLWREEESSI-------------------------WWNTFE  327 (423)
Q Consensus       278 ~~~~vl~-f~~-~~~~--~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~-------------------------l~~~f~  327 (423)
                      ++++++. ++. +..|  ..+.+..+...|.+. +.+..|...+.  .+                         +++.|+
T Consensus        31 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           31 AKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERK--DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSS--SHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCC--HHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            3455554 443 2223  345666677777654 66666654322  22                         889999


Q ss_pred             CCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549          328 VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (423)
Q Consensus       328 v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi  360 (423)
                      +.+.|+++++...+.....+.|..+.+.+.+.+
T Consensus       109 i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l  141 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVIIAKRIGYENLDDFLVQY  141 (148)
T ss_dssp             CCSSCEEEEECTTCBEEEESCCGGGHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcEEEecCCHHHHHHHHHHH
Confidence            999999999955554444445654444444433

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=92.73  E-value=0.079  Score=41.91  Aligned_cols=38  Identities=13%  Similarity=0.120  Sum_probs=31.1

Q ss_pred             cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       319 ~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+++++|+|.++||+++  ++  +  .|.|..+.+.|.+|+.-
T Consensus        55 ~~~l~~~~~V~~~PT~~i--~G--~--~~~G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           55 QAQECTEAGITSYPTWII--NG--R--TYTGVRSLEALAVASGY   92 (106)
T ss_dssp             CCHHHHHTTCCSSSEEEE--TT--E--EEESCCCHHHHHHHHTC
T ss_pred             hHHHHHHcCCeEeCEEEE--CC--E--EecCCCCHHHHHHHhCC
Confidence            467999999999999777  32  2  37899999999999854

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=92.41  E-value=0.26  Score=39.19  Aligned_cols=60  Identities=5%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549          293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM  360 (423)
Q Consensus       293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi  360 (423)
                      .+.+..++.++.  +.|..+++.+  .++++++|++. .|+|++|.++.  .+ ..|.++.+.|.+||
T Consensus        47 ~~~L~~l~~e~~--i~~~~vDId~--d~~l~~~ygv~-VP~l~~~~dG~--~v-~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           47 IASLRVLQKKSW--FELEVINIDG--NEHLTRLYNDR-VPVLFAVNEDK--EL-CHYFLDSDVIGAYL  106 (107)
T ss_dssp             HHHHHHHHHHSC--CCCEEEETTT--CHHHHHHSTTS-CSEEEETTTTE--EE-ECSSCCCHHHHHHH
T ss_pred             HHHHHHHHHhcC--CeEEEEECCC--CHHHHHHhCCC-CceEEEEECCE--EE-EecCCCHHHHHHHh
Confidence            455555665552  6677776543  46789999997 99999997643  22 46888989999887

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=92.39  E-value=0.1  Score=45.35  Aligned_cols=43  Identities=19%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHH-HHHHHHhhccceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAW-KTIAALLEGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~-~~~A~~l~~~~~~~~Vdc~  194 (423)
                      +..+.+|+||+++|++|..+.+.. .++.+.+.+.+++-.+...
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEecC
Confidence            356788999999999999999999 8888887666666666544

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=92.30  E-value=0.54  Score=39.13  Aligned_cols=37  Identities=11%  Similarity=0.245  Sum_probs=29.8

Q ss_pred             CCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          327 EVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       327 ~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ++.+.|+++++...+.....+.|..+.+.|.++|+..
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~  149 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA  149 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            8889999999965555555668888899999999873

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=92.17  E-value=0.14  Score=46.52  Aligned_cols=57  Identities=11%  Similarity=0.082  Sum_probs=41.2

Q ss_pred             CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ..-++.|..+||++|++....+++.      .+.+-.+|.+++....++.+.+|      ..++|+|.+
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~~i~~~~~~~~l~~~~g------~~~vP~~~~  225 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSG------RTTVPQVFI  225 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTC------CSSSCEEEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc------CCceEEEECCCchHHHHHHHHhC------CCCcCEEEE
Confidence            3446778899999999888766643      24566778775544466778888      789999853

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=92.10  E-value=0.56  Score=38.51  Aligned_cols=43  Identities=12%  Similarity=0.099  Sum_probs=32.2

Q ss_pred             HHHhhcCCCCCCeEEEecCCCcceeEecCCC--ChhHHHHHHHhh
Q 014549          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NNSRLSEVMEQN  363 (423)
Q Consensus       321 ~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~--~~~~l~~fi~~~  363 (423)
                      .+++.|++.+.|+++++...+.....+.|..  +.+.|.++|++.
T Consensus        96 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~  140 (152)
T 3gl3_A           96 QTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAA  140 (152)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHH
T ss_pred             hhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHH
Confidence            5788899999999999965555444556643  457899999885

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.81  E-value=0.23  Score=39.53  Aligned_cols=57  Identities=5%  Similarity=-0.063  Sum_probs=35.5

Q ss_pred             EEEEEecCCCcccc------ccHHHHHHHHHHhhccceEEEEEcccchhhh-HHHhhC--------CCCccccccCccEE
Q 014549          156 WLIQVYSDGSYLCG------QFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERK--------PIGQIFFRRGLPSL  220 (423)
Q Consensus       156 ~lV~FYapwC~~C~------~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~-~l~~~~--------~~~~~~~i~~~Pti  220 (423)
                      -++.|+.+||++|+      +....+++      -.+.+-.+|.+.++... .+.+.+        +      ...+|+|
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~------~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g------~~tvP~v   76 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEA------NKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG------NPLPPQI   76 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHH------TTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSS------SCCSCEE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHH------cCCCEEEEECCCCHHHHHHHHHHhcccccccCC------CCCCCEE
Confidence            36678899999998      44433322      12678889988554332 344454        4      6678986


Q ss_pred             EEeCCC
Q 014549          221 VAFPPG  226 (423)
Q Consensus       221 ~~f~~g  226 (423)
                      .  .+|
T Consensus        77 f--i~g   80 (111)
T 2ct6_A           77 F--NGD   80 (111)
T ss_dssp             E--ETT
T ss_pred             E--ECC
Confidence            4  455

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=91.69  E-value=0.83  Score=37.79  Aligned_cols=41  Identities=17%  Similarity=0.355  Sum_probs=34.4

Q ss_pred             HHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          322 WWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       322 l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +.+.|++.+.|+++++...+.....+.|..+.+.|.++|+.
T Consensus       112 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  152 (160)
T 3lor_A          112 TMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGS  152 (160)
T ss_dssp             HHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHH
Confidence            88999999999999997666555566898888889888876

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=91.50  E-value=0.79  Score=37.89  Aligned_cols=43  Identities=9%  Similarity=0.242  Sum_probs=35.0

Q ss_pred             HHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       321 ~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .+++.|++.+.|+++++...+.....+.|..+.+.|.++|++.
T Consensus       108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  150 (158)
T 3eyt_A          108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATL  150 (158)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence            5899999999999999966565555667888888898888773

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=91.42  E-value=0.2  Score=37.66  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=36.8

Q ss_pred             EEEEecC----CCccccccHHHHHHHHHHhhccceEEEEEcc-----cchh-hhHHHhhCCCCcccccc-----CccEEE
Q 014549          157 LIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELG-----DIRL-ATHLAERKPIGQIFFRR-----GLPSLV  221 (423)
Q Consensus       157 lV~FYap----wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-----~~~~-~~~l~~~~~~~~~~~i~-----~~Pti~  221 (423)
                      ++.|+.+    ||++|++....+++.      .+.+-.+|.+     +++. ..+|.+..|      ..     ++|+|.
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~------gi~y~~idI~~~~~~~~~~~~~~l~~~~g------~~~~~~~tvP~v~   69 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK------KQPFEFINIMPEKGVFDDEKIAELLTKLG------RDTQIGLTMPQVF   69 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT------TCCEEEEESCSBTTBCCHHHHHHHHHHHT------CSCCTTCCSCEEE
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc------CCCEEEEEeeccccccCHHHHHHHHHHhC------CCCCCCCccCEEE
Confidence            4567889    999998877666542      2466777776     4432 234666666      66     899865


Q ss_pred             EeCCC
Q 014549          222 AFPPG  226 (423)
Q Consensus       222 ~f~~g  226 (423)
                      + .+|
T Consensus        70 i-~~g   73 (87)
T 1aba_A           70 A-PDG   73 (87)
T ss_dssp             C-TTS
T ss_pred             E-ECC
Confidence            3 254

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=91.06  E-value=0.13  Score=42.86  Aligned_cols=65  Identities=12%  Similarity=0.073  Sum_probs=39.5

Q ss_pred             ccccCCCCcEEEEEec----CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEE
Q 014549          147 PSIFHDSKPWLIQVYS----DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       147 ~~~v~~~~~~lV~FYa----pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      ++.+...+ ++|+.++    |||++|++....+++.      .+.+..+|.++++.. ..|.+..|      ...+|+| 
T Consensus        29 ~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~ak~~L~~~------gv~y~~vdI~~d~~~~~~L~~~~G------~~tvP~V-   94 (135)
T 2wci_A           29 QRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALAAC------GERFAYVDILQNPDIRAELPKYAN------WPTFPQL-   94 (135)
T ss_dssp             HHHHHHCS-EEEEESBCSSSBSSHHHHHHHHHHHTT------CSCCEEEEGGGCHHHHHHHHHHHT------CCSSCEE-
T ss_pred             HHHhccCC-EEEEEEecCCCCCCccHHHHHHHHHHc------CCceEEEECCCCHHHHHHHHHHHC------CCCcCEE-
Confidence            34444443 4444444    9999999888776543      256788888754332 23444445      6788986 


Q ss_pred             EeCCC
Q 014549          222 AFPPG  226 (423)
Q Consensus       222 ~f~~g  226 (423)
                       |.+|
T Consensus        95 -fI~G   98 (135)
T 2wci_A           95 -WVDG   98 (135)
T ss_dssp             -EETT
T ss_pred             -EECC
Confidence             4455

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=90.63  E-value=0.65  Score=38.65  Aligned_cols=44  Identities=11%  Similarity=0.207  Sum_probs=35.8

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ..+++.|+|...|+++++...+.....+.|..+.+.|.++|++.
T Consensus       111 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~  154 (164)
T 2h30_A          111 GTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP  154 (164)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             hHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            57899999999999999955555545567888999999999873

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=90.58  E-value=1.7  Score=36.61  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=37.3

Q ss_pred             cceEEEEEccccccHHHHhhcCCCCCCeEEEecCC-CcceeEecCCCChhHHHHHHHh
Q 014549          306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       306 ~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~-~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+..+...+.+...+.++|++.++|+++++... +..-..+.| .+.+.+.++|++
T Consensus        77 ~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~  133 (153)
T 2dlx_A           77 HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTG  133 (153)
T ss_dssp             TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHH
T ss_pred             CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHH
Confidence            33445555443334678999999999999999664 333333455 788887777665

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=90.15  E-value=0.92  Score=37.37  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       319 ~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ...+++.|++.+.|+++++...+.....+   .+.+.|.++|+.
T Consensus        98 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~  138 (152)
T 2lrn_A           98 VKDVLESYCIVGFPHIILVDPEGKIVAKE---LRGDDLYNTVEK  138 (152)
T ss_dssp             HHHHHHHTTCCSSCEEEEECTTSEEEEEC---CCTTHHHHHHHH
T ss_pred             hHHHHHHhCCCcCCeEEEECCCCeEEEee---CCHHHHHHHHHH
Confidence            35788999999999999995444332222   345677777776

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=90.03  E-value=1.1  Score=36.77  Aligned_cols=42  Identities=10%  Similarity=0.179  Sum_probs=31.1

Q ss_pred             HHHhhcCCCCCCeEEEecCCCcceeEecCCC--ChhHHHHHHHh
Q 014549          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NNSRLSEVMEQ  362 (423)
Q Consensus       321 ~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~--~~~~l~~fi~~  362 (423)
                      .+++.|++.+.|+++++...+.....+.|..  +...+.++|++
T Consensus        97 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~  140 (154)
T 3kcm_A           97 RVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNN  140 (154)
T ss_dssp             HHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             HHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHH
Confidence            4888999999998888865555444556654  56788888877

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=89.72  E-value=0.25  Score=39.39  Aligned_cols=63  Identities=10%  Similarity=0.010  Sum_probs=38.8

Q ss_pred             cccCCCCcEEEEEec-----CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEE
Q 014549          148 SIFHDSKPWLIQVYS-----DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLV  221 (423)
Q Consensus       148 ~~v~~~~~~lV~FYa-----pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~  221 (423)
                      ++|+++.+  |.|..     |||++|++....+++.      .+.+-.+|.++++.. ..|.+..|      ...+|+|.
T Consensus        11 ~~i~~~~V--vlf~kg~~~~~~Cp~C~~ak~~L~~~------gi~y~~~di~~d~~~~~~l~~~~g------~~tvP~if   76 (111)
T 3zyw_A           11 KLTHAAPC--MLFMKGTPQEPRCGFSKQMVEILHKH------NIQFSSFDIFSDEEVRQGLKAYSS------WPTYPQLY   76 (111)
T ss_dssp             HHHTSSSE--EEEESBCSSSBSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHT------CCSSCEEE
T ss_pred             HHHhcCCE--EEEEecCCCCCcchhHHHHHHHHHHc------CCCeEEEECcCCHHHHHHHHHHHC------CCCCCEEE
Confidence            34444443  45667     9999999988666542      246677888755443 22333335      66899874


Q ss_pred             EeCCC
Q 014549          222 AFPPG  226 (423)
Q Consensus       222 ~f~~g  226 (423)
                        .+|
T Consensus        77 --i~g   79 (111)
T 3zyw_A           77 --VSG   79 (111)
T ss_dssp             --ETT
T ss_pred             --ECC
Confidence              455

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=89.59  E-value=0.65  Score=38.23  Aligned_cols=44  Identities=14%  Similarity=0.111  Sum_probs=33.2

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ..+++.|++.+.|+++++...+.....+.|..+.+.|.++|++.
T Consensus       107 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~  150 (156)
T 1kng_A          107 GRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQ  150 (156)
T ss_dssp             SHHHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred             hHHHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence            46888999999998777754444444567888888888888763

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=88.78  E-value=0.8  Score=42.58  Aligned_cols=81  Identities=12%  Similarity=0.115  Sum_probs=50.1

Q ss_pred             cEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc--c-------------chhhhHHHhhCCCCccccccCc--
Q 014549          155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG--D-------------IRLATHLAERKPIGQIFFRRGL--  217 (423)
Q Consensus       155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~--~-------------~~~~~~l~~~~~~~~~~~i~~~--  217 (423)
                      ..+..|.+++|++|.+.....++.+.... .+ .-.++.+  +             ......+.+++|      ++++  
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~~-vi-~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G------~~tVyT  115 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKGD-VV-GLSYHVDYWNYLGWTDSLASKENTERQYGYMRALG------RNGVYT  115 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHTS-SE-EEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTT------CSCCCS
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccCC-ee-eEEEEEEEecccccccchhhhhhhHHHHHHHHHhC------CCcccC
Confidence            56677889999999999998888876532 21 1122211  1             011234777888      7788  


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |+|++  +|..      .. |..+.+.|.+.+.+.
T Consensus       116 PqI~I--ng~~------~v-~G~d~~~l~~~l~~~  141 (270)
T 2axo_A          116 PQAIL--NGRD------HV-KGADVRGIYDRLDAF  141 (270)
T ss_dssp             SEEEE--TTTE------EE-ETTCHHHHHHHHHHH
T ss_pred             CEEEE--CCEE------ee-cCCCHHHHHHHHHHh
Confidence            98665  5542      12 334567787777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=88.74  E-value=0.48  Score=49.96  Aligned_cols=53  Identities=11%  Similarity=0.050  Sum_probs=40.6

Q ss_pred             hhcCCCCcccccccccccCCCCH--HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Q 014549           29 VVLPRSFPPSHYDALGIKPYSSV--EQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYEL   86 (423)
Q Consensus        29 ~~~~~~~~~d~y~~lg~~~~a~~--~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~   86 (423)
                      ..+..+...|||.+||++.+...  .+|++|||++++..+++     .+++..+..|+.|
T Consensus       621 l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          621 LDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-----RHRYTLVDMANKV  675 (681)
T ss_dssp             HHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHH
T ss_pred             HHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHhccc
Confidence            33455667789999999766655  66999999999976443     5688888888876

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=88.71  E-value=1.2  Score=37.74  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=31.2

Q ss_pred             HhhcCCCCCCeEEEecCCCcceeEecCCCC-hhHHHHHHHh
Q 014549          323 WNTFEVESAPAIVFLKDPGVKPVVYYGSFN-NSRLSEVMEQ  362 (423)
Q Consensus       323 ~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~-~~~l~~fi~~  362 (423)
                      .++|+|.+.|+++++...+.....+.|..+ .+.+.++|++
T Consensus       123 ~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~  163 (172)
T 3f9u_A          123 RVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQT  163 (172)
T ss_dssp             HHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHH
T ss_pred             HHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHH
Confidence            689999999999999544444344568887 8888888876

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=88.66  E-value=1.8  Score=35.77  Aligned_cols=71  Identities=7%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             hHHHHHHHhcc-ccceEEEEEccc-----------------cccHHHHhhcCCCCCCeEEEecCCCcceeEecCCC--Ch
Q 014549          294 PFVRQISRNYW-AYASFAFVLWRE-----------------EESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF--NN  353 (423)
Q Consensus       294 ~~~~~~a~~~~-~~~~f~~v~~~~-----------------~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~--~~  353 (423)
                      +.+..++.+|. ..+.+..+....                 .....+.+.|++.+.|+++++...+.....+.|..  +.
T Consensus        61 ~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~  140 (158)
T 3hdc_A           61 PSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDA  140 (158)
T ss_dssp             HHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTS
T ss_pred             HHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccch
Confidence            44555666665 345555555433                 01357999999999999888866555555566654  45


Q ss_pred             hHHHHHHHhhc
Q 014549          354 SRLSEVMEQNK  364 (423)
Q Consensus       354 ~~l~~fi~~~~  364 (423)
                      .++.+.+..+.
T Consensus       141 ~~~~~~~~~~~  151 (158)
T 3hdc_A          141 PKVVSYLKSLE  151 (158)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhhc
Confidence            56666666543

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=88.52  E-value=0.63  Score=35.41  Aligned_cols=58  Identities=7%  Similarity=-0.028  Sum_probs=35.0

Q ss_pred             EEEEecCCCccc------cccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEEEeCCC
Q 014549          157 LIQVYSDGSYLC------GQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       157 lV~FYapwC~~C------~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      ++.|+++||+.|      ++....+++      ..+.+-.+|.+.++.. ..+.+..|..    ...+|+|.  .+|
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~------~~i~~~~~di~~~~~~~~~l~~~~g~~----~~~vP~if--i~g   68 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDG------KRIQYQLVDISQDNALRDEMRTLAGNP----KATPPQIV--NGN   68 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH------TTCCCEEEETTSCHHHHHHHHHHTTCT----TCCSCEEE--ETT
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCC----CCCCCEEE--ECC
Confidence            567889999999      555544332      1257778888754332 2345555511    34889874  455

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=88.19  E-value=1.8  Score=36.91  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=27.4

Q ss_pred             CCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          327 EVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       327 ~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ++...|+++++...+.....+.|..+.+.|.++|+.
T Consensus       143 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  178 (183)
T 3lwa_A          143 PASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALP  178 (183)
T ss_dssp             CTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHH
Confidence            567899888776555555567888888899988876

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=87.73  E-value=1.5  Score=36.47  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=31.0

Q ss_pred             HHHhhcCCCCCCeEEEecCCCcceeEecCCC-ChhHHHHHHHh
Q 014549          321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVMEQ  362 (423)
Q Consensus       321 ~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~-~~~~l~~fi~~  362 (423)
                      .+.+.|++...|+++++...+..  .+.|.. +.+.|.++|++
T Consensus       121 ~~~~~~~v~~~P~~~lid~~G~i--~~~g~~~~~~~l~~~l~~  161 (165)
T 3ha9_A          121 SLVEKFNVRSIDYIVIMDKSSNV--LYAGTTPSLGELESVIKS  161 (165)
T ss_dssp             HHHHHTTCCSSSEEEEEETTCCE--EEEEESCCHHHHHHHHHH
T ss_pred             HHHHHhCCCCceEEEEEcCCCcE--EEeCCCCCHHHHHHHHHH
Confidence            68889999999999999544433  226777 78889888876

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=87.60  E-value=0.49  Score=37.41  Aligned_cols=50  Identities=14%  Similarity=0.092  Sum_probs=32.4

Q ss_pred             CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEEEeCCC
Q 014549          163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      |||++|++....+++.      .+.+-.+|.++++.. ..|.+..|      ...+|++  |.+|
T Consensus        31 p~Cp~C~~ak~~L~~~------gi~~~~~dI~~~~~~~~~l~~~~g------~~tvP~i--fi~g   81 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL------NVPFEDVNILENEMLRQGLKEYSN------WPTFPQL--YIGG   81 (109)
T ss_dssp             BSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHT------CSSSCEE--EETT
T ss_pred             CCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHHC------CCCCCeE--EECC
Confidence            6999999988776653      246677887644332 33444446      6789976  4455

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=87.56  E-value=0.83  Score=41.04  Aligned_cols=52  Identities=10%  Similarity=-0.064  Sum_probs=41.0

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHh
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE  204 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~  204 (423)
                      ++.+++.|| ++||+.|..-.+.+.+...+++.. +.+..|.++....+..-++
T Consensus        52 GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~  105 (216)
T 3sbc_A           52 GKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTN  105 (216)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHHHH
Confidence            567888999 899999999999999999999865 6888888884433333443

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=87.51  E-value=0.43  Score=42.27  Aligned_cols=43  Identities=14%  Similarity=0.137  Sum_probs=32.8

Q ss_pred             CCCcEEEEEecCCCccccccHHHH-HHHHHHh--hccceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAW-KTIAALL--EGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~-~~~A~~l--~~~~~~~~Vdc~  194 (423)
                      +.++.+|+|....|++|+++.+.. ..+.+.+  .|.++|...+..
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p   73 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM   73 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecC
Confidence            467789999999999999999875 5666666  456777666654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=87.40  E-value=3.6  Score=33.53  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=27.4

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+.+.|++...|+++++...+.....+   .+.+.+.+.|++
T Consensus       106 ~~~~~~~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~  145 (150)
T 3fw2_A          106 SEVAKQYSIYKIPANILLSSDGKILAKN---LRGEELKKKIEN  145 (150)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSBEEEES---CCHHHHHHHHHH
T ss_pred             hHHHHHcCCCccCeEEEECCCCEEEEcc---CCHHHHHHHHHH
Confidence            3789999999999999995444332222   256667776655

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=87.22  E-value=0.87  Score=36.79  Aligned_cols=53  Identities=9%  Similarity=-0.044  Sum_probs=32.3

Q ss_pred             CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEEEeCCC
Q 014549          163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      |||++|++....+++..-.   ...+-.+|..+++.. ..|.+..|      ...+|+|  |.+|
T Consensus        29 p~Cp~C~~ak~lL~~~gv~---~~~~~~~dv~~~~~~~~~l~~~sg------~~tvP~v--fI~g   82 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQGVD---PAKFAAYNVLEDPELREGIKEFSE------WPTIPQL--YVNK   82 (121)
T ss_dssp             BCTTHHHHHHHHHHHHTBC---GGGEEEEECTTCHHHHHHHHHHHT------CCSSCEE--EETT
T ss_pred             CCCccHHHHHHHHHHcCCC---cceEEEEEecCCHHHHHHHHHHhC------CCCCCeE--EECC
Confidence            6999999988777664210   012777887654433 23444445      6688987  4455

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=86.83  E-value=1.1  Score=39.16  Aligned_cols=55  Identities=9%  Similarity=0.047  Sum_probs=41.3

Q ss_pred             CCcEEEEEe-cCCCcccc-ccHHHHHHHHHHh-hcc-c-eEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVY-SDGSYLCG-QFSGAWKTIAALL-EGI-A-NTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~-~~~p~~~~~A~~l-~~~-~-~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ++.+++.|| ..||+-|. .-.+.|.+.+.++ +.. + .|..|.++........|++.+
T Consensus        43 gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~  102 (182)
T 1xiy_A           43 NKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMD  102 (182)
T ss_dssp             TCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC
Confidence            455666677 47999999 7888999999998 554 3 488888885545566788877

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=86.76  E-value=1.2  Score=37.20  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=31.9

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+++.|++...|+.+++...+.....+.|..+.+.+.++|+.
T Consensus       115 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  157 (168)
T 2b1k_A          115 GMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP  157 (168)
T ss_dssp             CHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHH
T ss_pred             hHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            5688999999999776665445444456788888888777765

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=86.44  E-value=0.85  Score=34.54  Aligned_cols=46  Identities=13%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             EEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          309 FAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       309 f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +..+++.+  +++++++|++. .|+|++ .++.  .+  .|.++.+.|.+||..
T Consensus        29 ~~~vdid~--~~~l~~~~g~~-vPtl~~-~~G~--~v--~g~~~~~~L~~~l~~   74 (87)
T 1ttz_A           29 FFSVFIDD--DAALESAYGLR-VPVLRD-PMGR--EL--DWPFDAPRLRAWLDA   74 (87)
T ss_dssp             EEEEECTT--CHHHHHHHTTT-CSEEEC-TTCC--EE--ESCCCHHHHHHHHHT
T ss_pred             eEEEECCC--CHHHHHHhCCC-cCeEEE-ECCE--EE--eCCCCHHHHHHHHHH
Confidence            45555432  46799999998 999988 5433  22  288899999999976

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=85.43  E-value=2.1  Score=38.49  Aligned_cols=53  Identities=9%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhh
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER  205 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~  205 (423)
                      ++.+++.|| ++||+.|..-...+.+...+++.. +.+..|.++....+...+++
T Consensus        56 GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~  110 (219)
T 3tue_A           56 GKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQ  110 (219)
T ss_dssp             TSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHHHHHS
T ss_pred             CCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHHHhhh
Confidence            467888999 799999999999999999999876 68888888854334444443

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=85.36  E-value=0.8  Score=41.35  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=32.8

Q ss_pred             CCCcEEEEEecCCCccccccHHH-HHHHHHHh--hccceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGA-WKTIAALL--EGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~-~~~~A~~l--~~~~~~~~Vdc~  194 (423)
                      +.++.+++|....|++|+++.|. ..++.+.+  .|.+++...+..
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p   83 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFP   83 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCC
Confidence            45678999999999999999986 57777676  456666655544

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=85.06  E-value=0.46  Score=40.39  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             hHHHHHHHhccccceEEEEEccccccHHHHhhcCC--CCCCeEEEecCCCcceeEecCC----------CChhHHHHHHH
Q 014549          294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEV--ESAPAIVFLKDPGVKPVVYYGS----------FNNSRLSEVME  361 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v--~~~Ptl~lfk~~~~~~~~y~g~----------~~~~~l~~fi~  361 (423)
                      |.+..++..+...+.|+.|...... ..++..|++  ..+||+++|..++.....+.|.          .+.+.|.++|+
T Consensus        66 p~l~~~~~~~~~~~~~~~v~~d~~~-~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~  144 (164)
T 1sen_A           66 PKFAESTEISELSHNFVMVNLEDEE-EPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMK  144 (164)
T ss_dssp             HHHHTCHHHHHHHTTSEEEEEEGGG-SCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCeEEEEEecCCc-hHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHH
Confidence            4443333333334566776644321 226788888  5599999993333322223443          56778888877


Q ss_pred             h
Q 014549          362 Q  362 (423)
Q Consensus       362 ~  362 (423)
                      .
T Consensus       145 ~  145 (164)
T 1sen_A          145 E  145 (164)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=84.81  E-value=2.1  Score=36.74  Aligned_cols=44  Identities=2%  Similarity=-0.045  Sum_probs=32.3

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeE---------ecCCCChhHHHHHHHhh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVV---------YYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~---------y~g~~~~~~l~~fi~~~  363 (423)
                      ..+++.|++...|+++++...+.....         +.|..+.+.|.+.|++.
T Consensus       120 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l  172 (196)
T 2ywi_A          120 QEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL  172 (196)
T ss_dssp             CHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred             hHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence            468899999999999999654443323         34666788888888874

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=84.55  E-value=4.9  Score=34.16  Aligned_cols=60  Identities=13%  Similarity=0.234  Sum_probs=36.3

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCC----------CChhHHHHHHHhhccccCcccccccccccCCCC
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGS----------FNNSRLSEVMEQNKLQELPQLRSVTSMELGCDA  383 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~----------~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~  383 (423)
                      ..+++.|++...|+++++...+..  .+.|.          .+.+.|.+.|+......  ...........|+-
T Consensus       106 ~~~~~~~~v~~~P~~~lid~~G~i--~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~--~~~~~~~~~~gc~~  175 (188)
T 2cvb_A          106 QEVAKAYRALRTPEVFLFDERRLL--RYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE--EPPLKEAPAIGCTI  175 (188)
T ss_dssp             SHHHHHTTCCEESEEEEECTTCBE--EEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC--CCCSSCCCCCSEEC
T ss_pred             chHHHHcCCCCCCeEEEECCCCcE--EEEEecCCccccccccCHHHHHHHHHHHHcCC--CCCcccCCCCceEE
Confidence            468889999999999999544432  23333          35678888888743221  12222334455655

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=83.71  E-value=1.1  Score=42.66  Aligned_cols=94  Identities=11%  Similarity=0.042  Sum_probs=54.2

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC------------cccccc----
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG------------QIFFRR----  215 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~------------~~~~i~----  215 (423)
                      ++++++.|| +.||+.|..-.+.+.+.  ..+ .+.+..|+++........++++++.            ..|+|.    
T Consensus        24 Gk~vvl~F~p~~~tp~C~~e~~~~~~~--~~~-~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~~~  100 (322)
T 4eo3_A           24 GKYTILFFFPKAGTSGSTREAVEFSRE--NFE-KAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGK  100 (322)
T ss_dssp             TSEEEEEECSSTTSHHHHHHHHHHHHS--CCT-TEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTTCEETTE
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHH--hhC-CCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcCCCCCCc
Confidence            568899999 47899998655555431  122 2456667766433334455555443            334463    


Q ss_pred             CccEEEEeCCCCCCCCCcccccC---CCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEG---ELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G---~~~~~~l~~fi~~~  252 (423)
                      .+|+..++-+.+..   ...|.+   ...++++++++.+.
T Consensus       101 ~~r~tfiId~~G~i---~~~~~~v~~~~h~~~~l~~~~~~  137 (322)
T 4eo3_A          101 TVRSTFLIDRWGFV---RKEWRRVKVEGHVQEVKEALDRL  137 (322)
T ss_dssp             ECCEEEEECTTSBE---EEEEESCCSTTHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCEE---EEEEeCCCccccHHHHHHHHhhh
Confidence            35676666444332   223443   44578888888765

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=83.40  E-value=4.5  Score=34.27  Aligned_cols=43  Identities=14%  Similarity=0.157  Sum_probs=33.6

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+++.|++...|+.+++...+.....+.|..+.+.+.++|..
T Consensus       122 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  164 (176)
T 3kh7_A          122 GTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAP  164 (176)
T ss_dssp             CHHHHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHH
T ss_pred             chHHHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHH
Confidence            5688899999999888886555555566788888888877766

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=83.33  E-value=0.78  Score=39.90  Aligned_cols=42  Identities=5%  Similarity=-0.161  Sum_probs=31.1

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHh-hccceEEEEE
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL-EGIANTGMVE  192 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l-~~~~~~~~Vd  192 (423)
                      .+..+.+|+|....|++|+++.+...++-++. .|.+++.--+
T Consensus        12 g~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~   54 (182)
T 3gn3_A           12 GHGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRL   54 (182)
T ss_dssp             ECCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEE
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence            45677899999999999999999887766654 4455544333

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=82.88  E-value=2  Score=36.21  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=33.4

Q ss_pred             chHHHHHHHhccc--cceEEEEEcccccc----------------------HHHHhhcCCCCCCeEEEecCC
Q 014549          293 SPFVRQISRNYWA--YASFAFVLWREEES----------------------SIWWNTFEVESAPAIVFLKDP  340 (423)
Q Consensus       293 ~~~~~~~a~~~~~--~~~f~~v~~~~~~~----------------------~~l~~~f~v~~~Ptl~lfk~~  340 (423)
                      .+.+..++.+|.+  .+.+..|...+...                      ..+++.|+|...|+++++...
T Consensus        67 ~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~  138 (165)
T 3s9f_A           67 TPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNAD  138 (165)
T ss_dssp             HHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCC
Confidence            3555667777764  45666665443311                      578999999999999999754

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=82.28  E-value=2.4  Score=36.43  Aligned_cols=55  Identities=2%  Similarity=-0.092  Sum_probs=42.9

Q ss_pred             CCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-c-eEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~-~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ++.+++.||. .||+-|..-.+.|.+.+.+++.. + .|..|.++........|++.+
T Consensus        42 gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~   99 (171)
T 2xhf_A           42 GRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVD   99 (171)
T ss_dssp             TSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHC
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcC
Confidence            4566677774 69999999999999999998854 4 488899886555566788777

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=81.85  E-value=2.4  Score=34.47  Aligned_cols=46  Identities=24%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             chHHHHHHHhcc--ccceEEEEEccccc----------------------cHHHHhhcCCCCCCeEEEec
Q 014549          293 SPFVRQISRNYW--AYASFAFVLWREEE----------------------SSIWWNTFEVESAPAIVFLK  338 (423)
Q Consensus       293 ~~~~~~~a~~~~--~~~~f~~v~~~~~~----------------------~~~l~~~f~v~~~Ptl~lfk  338 (423)
                      .+.+..++.+|.  ..+.+..|...+..                      ...+++.|+|.+.|+++++.
T Consensus        47 ~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid  116 (146)
T 1o8x_A           47 TPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVD  116 (146)
T ss_dssp             HHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEE
Confidence            345566666776  35667777654321                      25789999999999999996

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=81.73  E-value=2.2  Score=34.37  Aligned_cols=46  Identities=24%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             chHHHHHHHhcc--ccceEEEEEccccc----------------------cHHHHhhcCCCCCCeEEEec
Q 014549          293 SPFVRQISRNYW--AYASFAFVLWREEE----------------------SSIWWNTFEVESAPAIVFLK  338 (423)
Q Consensus       293 ~~~~~~~a~~~~--~~~~f~~v~~~~~~----------------------~~~l~~~f~v~~~Ptl~lfk  338 (423)
                      .+.+..++.++.  ..+.+..+...+..                      ...+++.|++...|+++++.
T Consensus        47 ~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid  116 (144)
T 1o73_A           47 TPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITIN  116 (144)
T ss_dssp             HHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEE
T ss_pred             HHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEE
Confidence            345555666665  35666666544321                      25689999999999999997

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=81.60  E-value=3.6  Score=34.52  Aligned_cols=54  Identities=15%  Similarity=0.153  Sum_probs=33.8

Q ss_pred             eEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-------CChhHHHHHHHh
Q 014549          308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-------FNNSRLSEVMEQ  362 (423)
Q Consensus       308 ~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-------~~~~~l~~fi~~  362 (423)
                      .|+.|.+.+ +..+++..+++.+.||+++|+.++..-....|.       +..+++.++|+.
T Consensus        79 ~fv~V~vD~-e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~  139 (151)
T 3ph9_A           79 KFIMLNLMH-ETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIEN  139 (151)
T ss_dssp             TCEEEEESS-CCSCGGGCTTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHH
T ss_pred             CeEEEEecC-CchhhHhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHH
Confidence            466676542 234467889999999999998544433233455       455555555554

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=81.16  E-value=1.4  Score=37.83  Aligned_cols=41  Identities=10%  Similarity=0.096  Sum_probs=29.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHH-HHHHHHhh--ccceEEEEE
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAW-KTIAALLE--GIANTGMVE  192 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~-~~~A~~l~--~~~~~~~Vd  192 (423)
                      +.++.++.|+.+.|++|..+.+.. .++.+.+.  +.+++.-..
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~   53 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVN   53 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEE
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEe
Confidence            456789999999999999999987 56766663  344444433

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=80.96  E-value=3.4  Score=39.89  Aligned_cols=44  Identities=14%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ..+++.|+|...|+++++...+.....+.|..+.+.|.++|++.
T Consensus       154 ~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~l  197 (352)
T 2hyx_A          154 YATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQL  197 (352)
T ss_dssp             SHHHHHTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            46889999999999999955555555567888888888887764

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=80.80  E-value=6.8  Score=33.09  Aligned_cols=69  Identities=9%  Similarity=0.158  Sum_probs=43.0

Q ss_pred             hHHHHHHHhcc-ccceEEEEEcccc--cc-HHHHhhcCCC-----------------------CCCeEEEecCCCcceeE
Q 014549          294 PFVRQISRNYW-AYASFAFVLWREE--ES-SIWWNTFEVE-----------------------SAPAIVFLKDPGVKPVV  346 (423)
Q Consensus       294 ~~~~~~a~~~~-~~~~f~~v~~~~~--~~-~~l~~~f~v~-----------------------~~Ptl~lfk~~~~~~~~  346 (423)
                      +.+..+..+|. ..+.+..|.....  +. ..+++++++.                       +.|+++++...+.....
T Consensus        80 ~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  159 (186)
T 1jfu_A           80 PALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  159 (186)
T ss_dssp             HHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             HHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence            34455555665 3466666665432  11 4566777764                       78999999655555455


Q ss_pred             ecCCCC--hhHHHHHHHh
Q 014549          347 YYGSFN--NSRLSEVMEQ  362 (423)
Q Consensus       347 y~g~~~--~~~l~~fi~~  362 (423)
                      +.|..+  .+.+.++|+.
T Consensus       160 ~~g~~~~~~~~l~~~l~~  177 (186)
T 1jfu_A          160 IAGPAEWASEDALKLIRA  177 (186)
T ss_dssp             EESCCCTTSHHHHHHHHH
T ss_pred             EecCCccCHHHHHHHHHH
Confidence            667654  6788888876

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=80.14  E-value=2.7  Score=33.95  Aligned_cols=46  Identities=17%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             chHHHHHHHhcc--ccceEEEEEccccc----------------------cHHHHhhcCCCCCCeEEEec
Q 014549          293 SPFVRQISRNYW--AYASFAFVLWREEE----------------------SSIWWNTFEVESAPAIVFLK  338 (423)
Q Consensus       293 ~~~~~~~a~~~~--~~~~f~~v~~~~~~----------------------~~~l~~~f~v~~~Ptl~lfk  338 (423)
                      .+.+..++.+|.  ..+.+..|...+..                      ...+++.|++...|+++++.
T Consensus        47 ~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid  116 (144)
T 1i5g_A           47 TPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVE  116 (144)
T ss_dssp             HHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEE
T ss_pred             HHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEE
Confidence            345566677776  35666677654321                      25789999999999999996

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=80.03  E-value=3.6  Score=33.87  Aligned_cols=42  Identities=7%  Similarity=0.072  Sum_probs=31.0

Q ss_pred             HHHhhcCCCCCC---------------eEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          321 IWWNTFEVESAP---------------AIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       321 ~l~~~f~v~~~P---------------tl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      .+.+.|++...|               +++++...+.....+.|..+.+.|.+.|+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  158 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIAT  158 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHH
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHH
Confidence            478899998778               677775555555556788888888887776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	423
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-08
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-08
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-07
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-07
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-04
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-04
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-04
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	4e-04
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	0.002

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 30  VLPRSFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELL 87
           VL R+      + L +         ++++AY++ S   +  ++  S A   ++   +   
Sbjct: 4   VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHP-DKGGSHALMQELNSLWGTF 62

Query: 88  TDPLWKRNYDVYGIDEQ 104
              ++    ++ G   Q
Sbjct: 63  KTEVYNLRMNLGGTGFQ 79

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 31  LPRSFPPSHYDALGIKPYSSVEQVKEAY---------EKFSSKWNSGEEIPSTADFLKIQ 81
           L ++     Y  LG  P +++  +K+ Y         +K S+   +G        F++I 
Sbjct: 10  LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEID 69

Query: 82  YAYELLTDPLWKRNYDVYG 100
            A+++L +   K+ YD+  
Sbjct: 70  QAWKILGNEETKKKYDLQR 88

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTAD--FLKIQYAYELLTDPLWKRNY 96
           +Y  LG+   +S E++K AY + + +++  +     A+  F +I  AY++L+DP  +  +
Sbjct: 5   YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64

Query: 97  DVYG 100
           D YG
Sbjct: 65  DRYG 68

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 39  HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
           +Y+ LG+   +   ++++AY++ + K+    N G++    A F +I+ AYE+LTD   + 
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-EAKFKEIKEAYEVLTDSQKRA 63

Query: 95  NYDVYG 100
            YD YG
Sbjct: 64  AYDQYG 69

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 39  HYDALGIKP--YSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
             D LG++   + ++  +++AY K   +++  +         K+   Y+ + D +   + 
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE-KMKKMNTLYKKMEDGVKYAHQ 68

Query: 97  DVYG 100
             +G
Sbjct: 69  PDFG 72

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 38 SHYDALGIKPYSSVEQVKEAYE----KFSSKWNSG--EEIPSTADFLKIQYAYELLTDPL 91
          + +  +G+    + EQVK+ Y            +G   E  +   F+++  A+    +  
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 92 WKRNY 96
           K  Y
Sbjct: 94 QKPLY 98

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 39 HYDALGIKPYSSV--EQVKEAYEKFSSKWNS--------GEEIPSTADFLKIQYAYELLT 88
          ++   G+     +  + +   ++    +++          E++ +      I  A++ L 
Sbjct: 3  YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

Query: 89 DPLWKRNYD 97
           PL +  Y 
Sbjct: 63 HPLMRAEYL 71

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 140 VVTSEDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL 198
           VV ++++  I  D  K  LI+ Y+     C   +  ++ + AL         V +     
Sbjct: 6   VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI----- 60

Query: 199 ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW 248
                +          +G P++  +P G K       + G  +V+ +  +
Sbjct: 61  --AKVDATANDVPDEIQGFPTIKLYPAGAKGQ--PVTYSGSRTVEDLIKF 106

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 6/62 (9%), Positives = 13/62 (20%), Gaps = 4/62 (6%)

Query: 40 YDALGIKPYSSVEQVKEAYE----KFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
             +         + K+       K+    N      +   F  +Q     L    +   
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78

Query: 96 YD 97
            
Sbjct: 79 NA 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.88
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.87
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.86
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.86
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.85
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.85
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.85
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.84
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.84
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.83
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.83
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.82
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.77
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.76
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.73
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.72
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.72
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.72
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.72
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.71
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.7
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.7
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.69
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.68
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.68
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.66
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.66
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.65
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.64
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.63
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.54
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.54
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.49
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.48
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.46
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.46
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.14
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.89
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.86
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.82
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.73
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.71
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.7
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.68
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.65
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.62
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.57
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.53
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.53
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.51
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.32
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.31
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.31
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.3
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.23
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.19
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.18
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.1
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.08
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.08
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.06
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.06
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.05
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.05
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.02
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.01
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.97
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.83
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.79
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.76
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.69
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.61
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	97.6
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.6
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.59
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.47
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.45
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.43
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.43
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.41
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.38
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.34
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.26
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.2
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.2
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.06
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	96.82
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.8
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.71
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	96.69
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.58
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.45
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	96.44
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	96.42
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.41
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	96.11
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	96.05
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	96.03
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.02
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	96.02
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	95.65
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	95.61
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	95.37
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	95.08
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	94.97
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	94.72
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	94.14
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	94.1
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	94.1
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	94.04
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	93.95
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	93.81
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.68
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	93.61
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	93.56
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	93.3
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	93.14
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	92.67
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	92.33
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	91.88
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	91.61
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	91.59
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	91.54
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	91.09
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	90.26
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	89.54
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	86.37
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	85.9
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	85.79
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	85.04
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	84.58
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	83.66
d1wjka_	100	Thioredoxin-like structure containing protein C330	82.99
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	81.41

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.8e-24  Score=175.43  Aligned_cols=110  Identities=14%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             CCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCCCCc
Q 014549          132 DHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       132 ~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      .|.++.|++||.++|+++|++++.|||+||+|||++|+++.|.|+++|+.+.+ .+.|+.|||+   .+.++|++++   
T Consensus         6 ~~~~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~---~~~~l~~~~~---   79 (119)
T d2b5ea4           6 APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT---ENQDLCMEHN---   79 (119)
T ss_dssp             CCTTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT---TCHHHHHHTT---
T ss_pred             CCCCCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeecc---chHHHHHHhc---
Confidence            35677899999999999999999999999999999999999999999999865 4899999999   5566999999   


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |.++|||++|++|+..  ....|.|.++.++|++|+.+.
T Consensus        80 ---v~~~Pti~~f~~g~~~--~~~~y~g~~~~~~l~~fi~k~  116 (119)
T d2b5ea4          80 ---IPGFPSLKIFKNSDVN--NSIDYEGPRTAEAIVQFMIKQ  116 (119)
T ss_dssp             ---CCSSSEEEEEETTCTT--CEEECCSCCSHHHHHHHHHHH
T ss_pred             ---cccCCeEEEEECCEEe--eeEEecCCCCHHHHHHHHHHh
Confidence               9999999999988652  245689999999999999987

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.88  E-value=3.6e-23  Score=172.27  Aligned_cols=112  Identities=15%  Similarity=0.199  Sum_probs=91.7

Q ss_pred             CCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccc------cccHHHHHHHHHHhhcc-ceEEEEEcccc
Q 014549          124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC------GQFSGAWKTIAALLEGI-ANTGMVELGDI  196 (423)
Q Consensus       124 ~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C------~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~  196 (423)
                      ++|-|++.    ..|++||++||+++|++++.|+|.||||||+||      +.+.+.++++|+.+++. +.||+|||+  
T Consensus         3 ~~p~~d~~----~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~--   76 (124)
T d1a8ya1           3 DFPEYDGV----DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE--   76 (124)
T ss_dssp             CCCCCCCC----CCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETT--
T ss_pred             CCCccCCC----CccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEee--
Confidence            45667665    247999999999999888999999999999985      33444455555555554 799999999  


Q ss_pred             hhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549          197 RLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI  253 (423)
Q Consensus       197 ~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~  253 (423)
                       .+..+|++++      |++||||++|.+|+.     ..|+|.|+.++|++|+.+.+
T Consensus        77 -~~~~l~~~~~------I~~yPTi~~f~~g~~-----~~y~G~r~~~~l~~fi~~~l  121 (124)
T d1a8ya1          77 -KDAAVAKKLG------LTEEDSIYVFKEDEV-----IEYDGEFSADTLVEFLLDVL  121 (124)
T ss_dssp             -TSHHHHHTTT------CCSTTCEEEEESSSE-----EECCSCCSHHHHHHHHHHHH
T ss_pred             -cccchhhccc------cccCCcEEEeccCcc-----EEeeCCCCHHHHHHHHHHhc
Confidence             4556999999      999999999998864     48999999999999998873

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=1.1e-22  Score=168.79  Aligned_cols=108  Identities=10%  Similarity=0.095  Sum_probs=92.2

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccc--hhhhHHHhhCCCCccc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDI--RLATHLAERKPIGQIF  212 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~--~~~~~l~~~~~~~~~~  212 (423)
                      +++||+.||+++|++++.+||+||||||+||+  .|+|+++|+.+..   .+.+|+|||+..  ..+.++|+++++.   
T Consensus         4 ~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~---   78 (122)
T d2c0ga2           4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD---   78 (122)
T ss_dssp             CEECCTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC---
T ss_pred             eEEcChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcc---
Confidence            68999999999999999999999999999999  5999999998754   479999999732  3457799999944   


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       +++||||++|++|... .....|.|.|+.++|++|+.++
T Consensus        79 -~~~~PTi~~f~~g~~~-~~~~~~~g~rt~~~l~~fv~~~  116 (122)
T d2c0ga2          79 -DKNFPSIFLFKGNADE-YVQLPSHVDVTLDNLKAFVSAN  116 (122)
T ss_dssp             -TTSCCEEEEESSSSSS-EEECCTTSCCCHHHHHHHHHHH
T ss_pred             -cCCCCcEEEEeCCccc-ccccccCCCCCHHHHHHHHHHh
Confidence             5799999999998652 1234678999999999999988

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.86  E-value=2e-22  Score=163.47  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=94.0

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|++||++||++.| +++++++|.||||||++|+++.|.|++++.++.+.+.++.|||+   ..+.+|++|+      |+
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d---~~~~l~~~~~------I~   73 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID---PNPTTVKKYK------VE   73 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEEST---TCHHHHHHTT------CC
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceeccc---ccHHHHHHhc------cc
Confidence            38999999999755 78899999999999999999999999999999999999999999   4556999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|.+|+.    ...|.|.++.++|.+|+.++
T Consensus        74 ~~Pt~~~~~~g~~----v~~~~G~~~~~~l~~~i~~~  106 (108)
T d1thxa_          74 GVPALRLVKGEQI----LDSTEGVISKDKLLSFLDTH  106 (108)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCEE----EEEEeCCCCHHHHHHHHHHh
Confidence            9999999998865    56789999999999999876

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.86  E-value=2.7e-22  Score=161.57  Aligned_cols=102  Identities=14%  Similarity=0.203  Sum_probs=93.7

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |.+||++||++.| +++++++|.||||||++|+++.|.|+++++.+.+.+.++.|||+   ...++|++++      |++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d---~~~~l~~~~~------V~~   71 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD---EAPGIATQYN------IRS   71 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHTT------CCS
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecc---cchhhhhhcc------eee
Confidence            5789999999877 77899999999999999999999999999999999999999999   4556999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|++|+.    ..+|.|.++.+.|.+|+.+.
T Consensus        72 ~Pt~~~~~~G~~----v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          72 IPTVLFFKNGER----KESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             SSEEEEEETTEE----EEEEEECCCHHHHHHHHHHH
T ss_pred             eeEEEEEEcCeE----EEEEeCCCCHHHHHHHHHHh
Confidence            999999998865    56889999999999999876

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.85  E-value=3.5e-22  Score=161.21  Aligned_cols=102  Identities=13%  Similarity=0.201  Sum_probs=94.1

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      +++||++||++.++++++++|.||||||++|+.+.|.|+++++++.+.+.|++|||+   ..+.+|++|+      |+++
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~---~~~~~~~~~~------V~~~   72 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVD---ENPETTSQFG------IMSI   72 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETT---TCHHHHHHTT------CCBS
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECC---CCcccHHHCC------ccee
Confidence            478999999999999999999999999999999999999999999999999999999   5566999999      9999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ||+++|++|+.    ..++.|.++.++|.+++.+.
T Consensus        73 Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          73 PTLILFKGGEP----VKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             SEEEEEETTEE----EEEEESCCCHHHHHHHTTTT
T ss_pred             eEEEEEECCEE----EEEEECCCCHHHHHHHHHHH
Confidence            99999999876    46788999999999998765

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.9e-22  Score=164.78  Aligned_cols=106  Identities=17%  Similarity=0.320  Sum_probs=94.4

Q ss_pred             ceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549          136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF  212 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~  212 (423)
                      ..|+.||.+||++++++++++||.||||||++|+++.|.|+++++.+.+.   +.++.|||++   +..+|++++     
T Consensus         7 ~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~-----   78 (120)
T d1meka_           7 DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE---ESDLAQQYG-----   78 (120)
T ss_dssp             TTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT---CCSSHHHHT-----
T ss_pred             CCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc---chhHHHHhC-----
Confidence            34899999999999988999999999999999999999999999998653   7999999994   445999999     


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       |.++||+++|.+|...  ....|.|.++.++|++|+.++
T Consensus        79 -i~~~Pt~~~~~~G~~~--~~~~~~g~~~~~~l~~fi~~~  115 (120)
T d1meka_          79 -VRGYPTIKFFRNGDTA--SPKEYTAGREADDIVNWLKKR  115 (120)
T ss_dssp             -CCSSSEEEEEESSCSS--SCEECCCCSSHHHHHHHHHTT
T ss_pred             -CccCCeEEEEECCeEe--eeEEecCCCCHHHHHHHHHHh
Confidence             9999999999988652  245789999999999999987

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.85  E-value=7.4e-22  Score=161.95  Aligned_cols=103  Identities=19%  Similarity=0.361  Sum_probs=86.4

Q ss_pred             ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-----ceEEEEEcccchhhhHHHhhCCCC
Q 014549          136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-----ANTGMVELGDIRLATHLAERKPIG  209 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-----~~~~~Vdc~~~~~~~~l~~~~~~~  209 (423)
                      .+|..|+.+||++.| +++++|||.||||||++|++|.|.|+++|+.+.+.     +.++..++.   .   +|.+++  
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~---~---~~~~~~--   73 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT---A---NDVPDE--   73 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT---T---SCCSSC--
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc---h---hhhccc--
Confidence            358999999999987 88899999999999999999999999999999764     244444444   3   556777  


Q ss_pred             ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          |++||||++|++|...  ....|.|.++.++|++||.++
T Consensus        74 ----v~~~Pti~~f~~g~~~--~~~~~~g~~~~~~l~~fi~~~  110 (116)
T d2djja1          74 ----IQGFPTIKLYPAGAKG--QPVTYSGSRTVEDLIKFIAEN  110 (116)
T ss_dssp             ----CSSSSEEEEECSSCTT--SCCCCCCCSCHHHHHHHHHHT
T ss_pred             ----ccCCCEEEEEECCccC--ceEEecCCCCHHHHHHHHHHc
Confidence                9999999999988642  245799999999999999887

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=9.5e-22  Score=159.37  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=93.9

Q ss_pred             eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .|++||+++|++.+ +++++++|.||||||++|+.+.|.|+++|.++.+.+.++.+|++++   +.+|++|+      |+
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~---~~l~~~~~------v~   73 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYG------IR   73 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTC---TTHHHHTT------CC
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccch---hhHHHHhC------CC
Confidence            48999999999755 8889999999999999999999999999999999999999999955   45999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ..+|.|.++.+.|.+|+.+.
T Consensus        74 ~~PT~~~~~~G~~----v~~~~G~~~~~~l~~~i~~~  106 (108)
T d2trxa_          74 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             SSSEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             cEEEEEEEECCEE----EEEEeCCCCHHHHHHHHHHh
Confidence            9999999999875    56789999999999999876

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.84  E-value=9.9e-22  Score=159.04  Aligned_cols=102  Identities=15%  Similarity=0.216  Sum_probs=93.1

Q ss_pred             eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +..+|++||++.| +++++|+|.||||||++|+++.|.|+++++++.+.+.++.|||+   ..+++|++++      |++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d---~~~~l~~~~~------V~~   73 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD---ESPNVASEYG------IRS   73 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT---TCHHHHHHHT------CCS
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecc---cchhHHHHhc------ccc
Confidence            4678999999876 77889999999999999999999999999999999999999999   4556999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|.+|+.    ..+|.|.++.++|.+|+.+.
T Consensus        74 ~Pt~~~~~~G~~----v~~~~G~~~~~~l~~~i~~~  105 (107)
T d1dbya_          74 IPTIMVFKGGKK----CETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             SCEEEEESSSSE----EEEEESCCCHHHHHHHHHHH
T ss_pred             eEEEEEEECCeE----EEEEeCCCCHHHHHHHHHHh
Confidence            999999998876    56889999999999999886

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.5e-21  Score=164.35  Aligned_cols=105  Identities=16%  Similarity=0.264  Sum_probs=90.8

Q ss_pred             cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCc
Q 014549          135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      ++.|++|+.+||+++| +++++|||.||||||++|+++.|.|+++|+.+.+.   +.++.+||..     .+|++++   
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~-----~~~~~~~---   82 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-----NDVRGVV---   82 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-----CCCSSCC---
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc-----hhccccc---
Confidence            4679999999999988 67889999999999999999999999999998764   4667777662     3788898   


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |+++|||++|++|...  .+..|.|.++.++|++|+.+.
T Consensus        83 ---v~~~Ptl~~f~~g~~~--~~~~y~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          83 ---IEGYPTIVLYPGGKKS--ESVVYQGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             ---CSSSSEEEEECCTTSC--CCCBCCSCCCHHHHHHHHHHH
T ss_pred             ---cccCCeEEEEECCEEc--ceeEeCCCCCHHHHHHHHHHc
Confidence               9999999999998652  245799999999999999987

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.2e-21  Score=145.25  Aligned_cols=68  Identities=28%  Similarity=0.536  Sum_probs=63.1

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      .+|||+||||+++||.+|||+|||++++++|||++++   +.++|..|++||++|+||.+|..||++|..+
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            5799999999999999999999999999999999863   4567999999999999999999999999765

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.7e-21  Score=161.49  Aligned_cols=104  Identities=17%  Similarity=0.212  Sum_probs=88.9

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-------ceEEEEEcccchhhhHHHhhCCCCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-------ANTGMVELGDIRLATHLAERKPIGQ  210 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-------~~~~~Vdc~~~~~~~~l~~~~~~~~  210 (423)
                      +++||++||+++|++++.+||+||+|||.+|+.  |+|+++|+.+++.       +.++.+||+   .+..+|+++++. 
T Consensus         6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~---~n~~l~~~~~~~-   79 (122)
T d1g7ea_           6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDK---LNMELSEKYKLD-   79 (122)
T ss_dssp             SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSC---HHHHHHHHHTCS-
T ss_pred             eEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecccc---ccHHHHHhhccc-
Confidence            799999999999999999999999999999975  9999999999874       334555777   556699987755 


Q ss_pred             cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                         |++||||++|++|...  .+..|+|.|+.++|++|++++
T Consensus        80 ---I~~yPTi~~f~~G~~~--~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          80 ---KESYPVFYLFRDGDFE--NPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             ---SSSCEEEEEEESSCCC--CCEEEESCCCHHHHHHHHHTT
T ss_pred             ---ccCCCeEEEEecCccc--CceecCCCCCHHHHHHHHHhc
Confidence               8899999999998642  356899999999999999887

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-20  Score=140.68  Aligned_cols=69  Identities=26%  Similarity=0.475  Sum_probs=64.4

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ  104 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~  104 (423)
                      +.|||++|||+++||.++||+|||++++++|||+++  .+.++|..|++||++|+||.+|+.||++|+.+.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            569999999999999999999999999999999875  567889999999999999999999999998864

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.77  E-value=9.3e-20  Score=148.58  Aligned_cols=102  Identities=16%  Similarity=0.248  Sum_probs=89.7

Q ss_pred             eeeEe-ccCCccccc----CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          137 AFNVV-TSEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       137 ~v~~L-~~~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      .|+.+ |.++|++.+    .++++++|.|||+||++|+.+.|.|+++++++.+.+.++.|||+   ..+.+|++|+    
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d---~~~~l~~~~~----   75 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD---AVAAVAEAAG----   75 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TTHHHHHHHT----
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecc---cccccccccc----
Confidence            36777 567888777    46799999999999999999999999999999988999999999   4456999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |+++||+++|++|+.    ...+.|. +.++|.+|+.++
T Consensus        76 --v~~~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~i~k~  109 (112)
T d1ep7a_          76 --ITAMPTFHVYKDGVK----ADDLVGA-SQDKLKALVAKH  109 (112)
T ss_dssp             --CCBSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             --ccCCCEEEEEECCEE----EEEEeCc-CHHHHHHHHHHH
Confidence              999999999999876    4577784 899999999887

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.76  E-value=4.7e-19  Score=144.36  Aligned_cols=103  Identities=14%  Similarity=0.185  Sum_probs=89.1

Q ss_pred             ceeeEeccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          136 HAFNVVTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       136 ~~v~~L~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      +.|.++|.++|.+.+  .++++++|.||+|||++|+.+.|.|+++++++.+ +.++.|||++.  .++||++|+      
T Consensus         6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~--~~~l~~~~~------   76 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQE--NKTLAKELG------   76 (112)
T ss_dssp             TSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSST--THHHHHHHC------
T ss_pred             eeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeeccccccc--chhhHhhee------
Confidence            458999999999998  3468999999999999999999999999999876 67999999732  356999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |+++||+++|++|+.    ...|.|. +.+.+.+++.+.
T Consensus        77 V~~~Pt~~~~k~G~~----v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          77 IRVVPTFKILKENSV----VGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             CSSSSEEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             eccCCEEEEEECCEE----EEEEeCC-CHHHHHHHHHHc
Confidence            999999999998876    4678886 678999999765

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=1.6e-18  Score=140.77  Aligned_cols=102  Identities=14%  Similarity=0.217  Sum_probs=88.1

Q ss_pred             eeeEecc-CCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          137 AFNVVTS-EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       137 ~v~~L~~-~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      -|.++.+ ++|+..+  .++++++|.||||||++|+.+.|.|+++++++.+.+.++.||+++   ...+|++++      
T Consensus         6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~---~~~l~~~~~------   76 (111)
T d1xwaa_           6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE---CEDIAMEYN------   76 (111)
T ss_dssp             CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT---CHHHHHHTT------
T ss_pred             eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeec---CcchhhcCC------
Confidence            3566744 6798877  567899999999999999999999999999999999999999994   456999999      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |+++||+++|++|+.    ...+.|. +.++|.+|++++
T Consensus        77 V~~~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          77 ISSMPTFVFLKNGVK----VEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             CCSSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHT
T ss_pred             CccccEEEEEECCEE----EEEEeCC-CHHHHHHHHHhc
Confidence            999999999998876    4678886 568899999876

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=1.9e-18  Score=141.09  Aligned_cols=103  Identities=12%  Similarity=0.101  Sum_probs=87.9

Q ss_pred             cceeeEe-ccCCccccc----CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC
Q 014549          135 VHAFNVV-TSEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG  209 (423)
Q Consensus       135 ~~~v~~L-~~~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~  209 (423)
                      .+.|+.+ |.++|++.+    +++++++|.||||||++|+.+.|.|+++++.+.+ +.++.||++   .+..+|++|+  
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~---~~~~l~~~~~--   78 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTD---ELKSVASDWA--   78 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETT---TSHHHHHHTT--
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEee---eceeeccccc--
Confidence            3456777 667788766    5689999999999999999999999999998865 689999999   4556999999  


Q ss_pred             ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          |+++||+++|++|+.    ...+.|. +.++|.+|+.++
T Consensus        79 ----V~~~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~i~k~  112 (114)
T d1xfla_          79 ----IQAMPTFMFLKEGKI----LDKVVGA-KKDELQSTIAKH  112 (114)
T ss_dssp             ----CCSSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             ----eeeeEEEEEEECCEE----EEEEeCc-CHHHHHHHHHHh
Confidence                999999999999876    4567785 789999999887

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.2e-18  Score=136.69  Aligned_cols=68  Identities=21%  Similarity=0.451  Sum_probs=61.2

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---------hHHHHHHHHHHHHHcCChhhHhhhhhcCC
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---------STADFLKIQYAYELLTDPLWKRNYDVYGI  101 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---------~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~  101 (423)
                      +...|||+||||+++++.++||+|||+|+++||||+++.         +.++|..|++||++|+||++|+.||..+.
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            446899999999999999999999999999999999762         45679999999999999999999997643

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.72  E-value=1.9e-18  Score=140.89  Aligned_cols=101  Identities=13%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             eeeEecc-----CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcc
Q 014549          137 AFNVVTS-----EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI  211 (423)
Q Consensus       137 ~v~~L~~-----~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~  211 (423)
                      .|+.++.     +.|++.+.++++++|.|||+||++|+.+.|.|+++++++.+ +.++.|||+   ..+.+|++++    
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d---~~~~l~~~~~----   76 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVD---ELKAVAEEWN----   76 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETT---TCHHHHHHHH----
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeee---ccccccccCe----
Confidence            4666655     23445557889999999999999999999999999999865 689999999   4456999999    


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        |+++||+++|++|+.    ...+.| .+.++|.+|+.++
T Consensus        77 --I~~~Pt~~~~k~G~~----v~~~~G-~~~~~l~~~i~k~  110 (113)
T d1ti3a_          77 --VEAMPTFIFLKDGKL----VDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             --CSSTTEEEEEETTEE----EEEEEC-CCTTHHHHHHHHH
T ss_pred             --ecccceEEEEECCEE----EEEEcC-CCHHHHHHHHHHH
Confidence              999999999999876    456667 5789999999887

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.72  E-value=1.9e-18  Score=138.50  Aligned_cols=97  Identities=10%  Similarity=0.237  Sum_probs=85.2

Q ss_pred             eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      -|.++|+++++++++++|.||+|||++|+.+.|.|+++++++.+ ..++.+|++   ...++|++++      |+++||+
T Consensus         6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d---~~~~~~~~~~------V~~~Pt~   75 (103)
T d1syra_           6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVD---EVSEVTEKEN------ITSMPTF   75 (103)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT---TTHHHHHHTT------CCSSSEE
T ss_pred             CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccc---cCcceeeeee------eecceEE
Confidence            35678999998899999999999999999999999999999865 579999999   4556999999      9999999


Q ss_pred             EEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++|++|+.    ..+|.|. +.+.|.+|+.++
T Consensus        76 i~~k~G~~----v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          76 KVYKNGSS----VDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEETTEE----EEEEESC-CHHHHHHHHHTT
T ss_pred             EEEECCEE----EEEEeCc-CHHHHHHHHHhh
Confidence            99999876    4678885 689999999775

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.71  E-value=2.8e-19  Score=145.88  Aligned_cols=67  Identities=15%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             cccccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549           36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDE  103 (423)
Q Consensus        36 ~~d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~  103 (423)
                      ..|+|+||||+++|  +.++||+|||+||+++|||+++ +.++|++|++||++|+||.+|+.||.+|...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~-~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-DEEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCC-TTTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46899999999999  7889999999999999999985 5679999999999999999999999988765

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.2e-18  Score=136.04  Aligned_cols=96  Identities=13%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             ccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccE
Q 014549          142 TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       142 ~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      |.++|++.+  .++++++|.|||+||++|+++.|.|+++|+++.+ +.|..||++   ..++++++++      |+++||
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d---~~~~l~~~~~------v~~~Pt   77 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVH---QCQGTAATNN------ISATPT   77 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETT---TSHHHHHHTT------CCSSSE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccc---cchhhhhhcC------ceeceE
Confidence            667899888  4578999999999999999999999999999875 789999999   4556999999      999999


Q ss_pred             EEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       220 i~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +++|++|+.    ...+.|. +.+.|.+++.++
T Consensus        78 ~~~~~~G~~----v~~~~G~-~~~~l~~~i~k~  105 (107)
T d1gh2a_          78 FQFFRNKVR----IDQYQGA-DAVGLEEKIKQH  105 (107)
T ss_dssp             EEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEECCEE----EEEEeCC-CHHHHHHHHHHh
Confidence            999999876    5678884 899999999886

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.8e-18  Score=136.08  Aligned_cols=99  Identities=11%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             eEe-ccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          139 NVV-TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       139 ~~L-~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      .++ +.++|++.+  .++++++|.|||+||++|+.+.|.++++++.+.+ ..+++||++   ..++++++++      |+
T Consensus         3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d---~~~~~~~~~~------V~   72 (105)
T d2ifqa1           3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVD---DCQDVASECE------VK   72 (105)
T ss_dssp             EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT---TCHHHHHHTT------CC
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccc---cCHhHHHHcC------ce
Confidence            445 446788888  4478999999999999999999999999998865 469999999   4556999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ..++.|. +.+.|.+++.+.
T Consensus        73 ~~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          73 CMPTFQFFKKGQK----VGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             BSSEEEEEETTEE----EEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEEEEECCEE----EEEEeCC-CHHHHHHHHHhh
Confidence            9999999999876    5678885 788999998765

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=1.1e-17  Score=129.04  Aligned_cols=83  Identities=13%  Similarity=0.068  Sum_probs=74.0

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      +++.++.||||||++|+.+.|.|+++++.+.+.+.+..+||+++   .++|++|+      |+++||++++.+|      
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~---~~la~~~~------V~~~Pt~~i~~~g------   66 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMEN---PQKAMEYG------IMAVPTIVINGDV------   66 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSS---CCTTTSTT------TCCSSEEEETTEE------
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccccccccccccccc---ccccccCC------ceEeeEEEEECCc------
Confidence            46778999999999999999999999999988899999999954   45999999      9999999988765      


Q ss_pred             cccccCCCCHHHHHHHHHHh
Q 014549          233 MTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi~~~  252 (423)
                        .|.|.++.++|.+|+.++
T Consensus        67 --~~~G~~~~~~l~~~i~~~   84 (85)
T d1fo5a_          67 --EFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             --ECCSSSSSHHHHHHHHHH
T ss_pred             --EEECCCCHHHHHHHHHhc
Confidence              467999999999999876

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.69  E-value=9e-18  Score=136.82  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=86.1

Q ss_pred             eeEe-ccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          138 FNVV-TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L-~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      |+++ +.++|+++++++++++|+|||+||++|+++.|.|+++++++. .+.|+.|||++   .+++|++|+      |++
T Consensus        10 vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~---~~~l~~~~~------V~~   79 (113)
T d1r26a_          10 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN---NSEIVSKCR------VLQ   79 (113)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTT---CHHHHHHTT------CCS
T ss_pred             eEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc-ccccccccccc---chhhHHHcc------ccC
Confidence            4556 557799999999999999999999999999999999999985 57999999994   456999999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +||+++|++|+.    ...+.|. +.+.+.+++.+.
T Consensus        80 ~Pt~~~~~~G~~----v~~~~G~-~~~~l~~~l~~~  110 (113)
T d1r26a_          80 LPTFIIARSGKM----LGHVIGA-NPGMLRQKLRDI  110 (113)
T ss_dssp             SSEEEEEETTEE----EEEEESS-CHHHHHHHHHHH
T ss_pred             CCEEEEEECCEE----EEEEeCC-CHHHHHHHHHHH
Confidence            999999999876    4577785 578888887765

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.68  E-value=2.5e-17  Score=135.31  Aligned_cols=101  Identities=9%  Similarity=0.045  Sum_probs=78.1

Q ss_pred             eEeccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          139 NVVTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       139 ~~L~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      ..++..+|++.+  ..+.++++.||++||++|+.++|.|+++++++.+ .+.++.|||+   .++.+|++|+      |+
T Consensus        14 ~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d---~~~~l~~~~~------V~   84 (119)
T d2es7a1          14 QPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE---QSEAIGDRFN------VR   84 (119)
T ss_dssp             EECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHH---HHHHHHHTTT------CC
T ss_pred             ceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC---CCHHHHHhcC------cC
Confidence            457888898887  4467899999999999999999999999999988 4899999999   6667999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ...+.|.++.+++++++.+.
T Consensus        85 ~~Pt~~~~~~G~~----v~~~~G~~~~~~l~~~i~~l  117 (119)
T d2es7a1          85 RFPATLVFTDGKL----RGALSGIHPWAELLTLMRSI  117 (119)
T ss_dssp             SSSEEEEESCC--------CEESCCCHHHHHHHHHHH
T ss_pred             cceEEEEEEcCeE----EEEeeCCCCHHHHHHHHHHH
Confidence            9999999999876    56889999999999999765

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.68  E-value=2.1e-17  Score=133.00  Aligned_cols=99  Identities=16%  Similarity=0.099  Sum_probs=80.8

Q ss_pred             eccCCcccccCCCCc-EEEEEecCCCccccccHHHHHHHHHHhh----ccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          141 VTSEDFPSIFHDSKP-WLIQVYSDGSYLCGQFSGAWKTIAALLE----GIANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       141 L~~~nf~~~v~~~~~-~lV~FYapwC~~C~~~~p~~~~~A~~l~----~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      |+++.++.+...++. +++.||||||++|+++.|.|+++|.+..    +.+.+..+|++   ..+++|++|+      |+
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~---~~~~l~~~~~------V~   72 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI---EYPEWADQYN------VM   72 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG---GCHHHHHHTT------CC
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccc---cccccccccc------cc
Confidence            555555555554555 5667999999999999999999987643    34789999999   4556999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ..++.|.++.+.|.+|+.+.
T Consensus        73 ~vPTi~i~~~G~~----~~~~~G~~~~~~~~~~i~~a  105 (107)
T d1a8la2          73 AVPKIVIQVNGED----RVEFEGAYPEKMFLEKLLSA  105 (107)
T ss_dssp             SSCEEEEEETTEE----EEEEESCCCHHHHHHHHHHH
T ss_pred             cceEEEEEeCCeE----EEEEECCCCHHHHHHHHHHh
Confidence            9999999999876    45788999999999999875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.1e-17  Score=139.97  Aligned_cols=101  Identities=8%  Similarity=0.040  Sum_probs=90.2

Q ss_pred             eEeccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549          139 NVVTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR  215 (423)
Q Consensus       139 ~~L~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~  215 (423)
                      ..++.++|++.+  ..+.++||.|||+||++|+++.|.++++++++.+. +.+++|||+   .+.++|++|+      |+
T Consensus        20 ~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d---~~~~la~~~~------V~   90 (132)
T d2hfda1          20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE---QSEAIGDRFG------VF   90 (132)
T ss_dssp             EEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH---HHHHHHHHHT------CC
T ss_pred             cccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEec---CCHHHHHhhc------cC
Confidence            457888999887  33578999999999999999999999999999886 689999999   6667999999      99


Q ss_pred             CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      ++||+++|++|+.    ...+.|.++.++|++++...
T Consensus        91 ~~PT~~~~~~G~~----v~~~~G~~~~~~l~~~i~~l  123 (132)
T d2hfda1          91 RFPATLVFTGGNY----RGVLNGIHPWAELINLMRGL  123 (132)
T ss_dssp             SCCEEEEEETTEE----EEEECCCSCHHHHHHHHHHH
T ss_pred             cceeEEEEEcCcE----eeeecCCCCHHHHHHHHHHH
Confidence            9999999999876    56889999999999999876

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.66  E-value=6.9e-17  Score=124.56  Aligned_cols=80  Identities=11%  Similarity=0.031  Sum_probs=70.3

Q ss_pred             EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549          156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (423)
Q Consensus       156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~  235 (423)
                      .++.||||||++|+++.|.|+++++++.+.+.++.+|++++   .++|++|+      |+++||++++  |..      .
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~---~~l~~~~~------V~~~Pt~~~~--~~~------~   66 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD---REKAIEYG------LMAVPAIAIN--GVV------R   66 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTC---GGGGGGTC------SSCSSEEEET--TTE------E
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccc---hhhHHhcC------ceEeCEEEEC--CcE------E
Confidence            35569999999999999999999999999899999999954   45999999      9999998773  322      6


Q ss_pred             ccCCCCHHHHHHHHHHh
Q 014549          236 FEGELSVDAVTDWFATA  252 (423)
Q Consensus       236 y~G~~~~~~l~~fi~~~  252 (423)
                      |.|.++.+.|.+|+.+.
T Consensus        67 ~~G~~~~~~l~~~i~~~   83 (85)
T d1nhoa_          67 FVGAPSREELFEAINDE   83 (85)
T ss_dssp             EECSSCCHHHHHHHHHH
T ss_pred             EEcCCCHHHHHHHHHHh
Confidence            88999999999999886

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-17  Score=138.11  Aligned_cols=101  Identities=10%  Similarity=0.065  Sum_probs=78.4

Q ss_pred             cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549          143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL  220 (423)
Q Consensus       143 ~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti  220 (423)
                      ..+|++.|  .++++++|.||||||++|+++.|.|+++|+++.+.+.|+.|||+++   ++++++|+      |+++||+
T Consensus        10 ~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~---~~la~~~~------I~~~PT~   80 (137)
T d1qgva_          10 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV---PDFNKMYE------LYDPCTV   80 (137)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC---CTTTTSSC------SCSSCEE
T ss_pred             HHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeecccc---chhhhhcC------eeeEEEE
Confidence            35788877  4567999999999999999999999999999999999999999955   45999999      9999999


Q ss_pred             EEeCCCCCCC-----CCcccccC-CCCHHHHHHHHHHh
Q 014549          221 VAFPPGCKSS-----DCMTRFEG-ELSVDAVTDWFATA  252 (423)
Q Consensus       221 ~~f~~g~~~~-----~~~~~y~G-~~~~~~l~~fi~~~  252 (423)
                      ++|.+|+...     .+...+.| -.+.+++++.+...
T Consensus        81 ~~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          81 MFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            9999997520     00012222 24666777766543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.64  E-value=3.1e-17  Score=123.58  Aligned_cols=67  Identities=10%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             CCcccccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCC
Q 014549           34 SFPPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGI  101 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~  101 (423)
                      +...++|+||||++++  +.++||+|||+++++||||++ ++.++|++|++||++|+|+.+|..||..|.
T Consensus         8 ~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~-g~~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CCHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccC-CCHHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            3467899999999988  899999999999999999997 678899999999999999999999998653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.63  E-value=4.7e-17  Score=132.86  Aligned_cols=102  Identities=14%  Similarity=0.125  Sum_probs=84.8

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-hhhhHHHhhCCCCccccccC
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-~~~~~l~~~~~~~~~~~i~~  216 (423)
                      +..+|.+.+.+.++++++++|.||+|||++|+++.|.|+++++..+..+.+..++...+ ....+++++++      |.+
T Consensus        11 ~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~------V~~   84 (115)
T d1zmaa1          11 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG------IPT   84 (115)
T ss_dssp             SEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT------CCS
T ss_pred             eeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccc------ccc
Confidence            45567778888889999999999999999999999999999999877655544443322 23456889999      999


Q ss_pred             ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      +||+++|++|+.    ..++.|.++.++|.+|+
T Consensus        85 ~PTli~~~~gk~----~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          85 VPGFVHITDGQI----NVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             SCEEEEEETTEE----EEECCTTCCHHHHHHHH
T ss_pred             ccEEEEEECCEE----EEEEcCCCCHHHHHHHH
Confidence            999999999876    56899999999999997

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.4e-15  Score=114.48  Aligned_cols=61  Identities=11%  Similarity=0.301  Sum_probs=54.1

Q ss_pred             cccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549           38 SHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV   98 (423)
Q Consensus        38 d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~   98 (423)
                      |||++|||++.+  +.++||+|||++++++|||+..+        +.+.|..|++||++|+||.+|..|+.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            899999999865  58999999999999999998642        34569999999999999999999985

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.54  E-value=8.1e-15  Score=115.39  Aligned_cols=79  Identities=14%  Similarity=0.152  Sum_probs=67.7

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC  232 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~  232 (423)
                      +...++.||+|||++|+.+.|.|+++|.. .+.+.+..||++   .++++|++|+      |+++||+++  +|+.    
T Consensus        15 ~~~~i~~F~s~~C~~C~~~~p~~~~~a~~-~~~i~~~~vd~~---~~~~l~~~~~------I~~vPt~~~--ng~~----   78 (96)
T d1hyua4          15 GDFEFETYYSLSCHNCPDVVQALNLMAVL-NPRIKHTAIDGG---TFQNEITERN------VMGVPAVFV--NGKE----   78 (96)
T ss_dssp             SCEEEEEEECTTCSSHHHHHHHHHHHHHH-CTTEEEEEEETT---TCHHHHHHTT------CCSSSEEEE--TTEE----
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHh-CCceEEEEEecc---cchHHHhhcc------cccccEEEE--CCEE----
Confidence            55678889999999999999999999976 445899999999   5566999999      999999854  6643    


Q ss_pred             cccccCCCCHHHHHHHH
Q 014549          233 MTRFEGELSVDAVTDWF  249 (423)
Q Consensus       233 ~~~y~G~~~~~~l~~fi  249 (423)
                        .|.|.++.++|++++
T Consensus        79 --~~~G~~~~~~l~~~l   93 (96)
T d1hyua4          79 --FGQGRMTLTEIVAKV   93 (96)
T ss_dssp             --EEESCCCHHHHHHHH
T ss_pred             --EEecCCCHHHHHHHH
Confidence              688999999999987

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.6e-15  Score=120.62  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=79.0

Q ss_pred             eeEeccCCccccc--CCCCcEEEEEecC-------CCccccccHHHHHHHHHHhhccceEEEEEcccch----hhhHHHh
Q 014549          138 FNVVTSEDFPSIF--HDSKPWLIQVYSD-------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAE  204 (423)
Q Consensus       138 v~~L~~~nf~~~v--~~~~~~lV~FYap-------wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~----~~~~l~~  204 (423)
                      |...+.++|.+.|  .++++++|.|||+       ||++|+++.|.|+++++.+.+.+.|+.||+++.+    ....+++
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence            5556777888888  4567999999994       9999999999999999999888999999986322    2345888


Q ss_pred             hCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549          205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF  249 (423)
Q Consensus       205 ~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi  249 (423)
                      +|+      |+++||+++|.+|+.    ...+.+ .+.+.|..|+
T Consensus        84 ~~~------V~~iPT~i~~~~g~~----l~~~~~-~~~~ll~~~~  117 (119)
T d1woua_          84 NLK------VTAVPTLLKYGTPQK----LVESEC-LQANLVEMLF  117 (119)
T ss_dssp             HHC------CCSSSEEEETTSSCE----EEGGGG-GCHHHHHHHH
T ss_pred             hCC------eEEEEEEEEEECCeE----Eeeeec-CCHHHHHHHh
Confidence            998      999999999998875    334444 3455555554

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.4e-15  Score=113.15  Aligned_cols=65  Identities=12%  Similarity=0.055  Sum_probs=55.7

Q ss_pred             CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCC
Q 014549           34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGI  101 (423)
Q Consensus        34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~  101 (423)
                      +.-.|+|+|||++.++|.+|||+|||+|+++||||++++    +.++|+.|++||++|+   ++..||..+.
T Consensus        13 ~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~   81 (88)
T d1iura_          13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNAD   81 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSS
T ss_pred             hHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccch
Confidence            335799999999999999999999999999999999984    4667999999999996   4666665543

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3e-14  Score=116.00  Aligned_cols=99  Identities=15%  Similarity=0.265  Sum_probs=72.8

Q ss_pred             CCccccc--CCCCcEEEEEecCCCccccccHHHHHH---HHHHhhccceEEEEEcc-cchhhhHHHhhCCCCccccccCc
Q 014549          144 EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       144 ~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~---~A~~l~~~~~~~~Vdc~-~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      ++++..+  ..++++||.|||+||++|+.+.|.+.+   +++.+.+ ..+..+|+. +......++++++      |.++
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~------v~~~   83 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLN------VLGL   83 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTT------CCSS
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccc-eEEEecccccchhHHHHHHhhhe------hhhc
Confidence            3455555  457899999999999999999999844   4444433 456667765 3335677999999      9999


Q ss_pred             cEEEEeCC-CCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          218 PSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       218 Pti~~f~~-g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      ||+++|.+ |+..  ...++.|.++++.+.+++++
T Consensus        84 Pt~~~~~~~G~~~--~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          84 PTILFFDGQGQEH--PQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             SEEEEECTTSCBC--GGGCBCSCCCHHHHHHHHHH
T ss_pred             eEEEEEeCCCcEE--ecccccccCCHHHHHHHHhc
Confidence            99999955 4431  11246799999999999975

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=6.3e-15  Score=115.87  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhHhhh
Q 014549           36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNY   96 (423)
Q Consensus        36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~~~~~r~~y   96 (423)
                      ..+.|++||++..++.++||+|||++++.+|||++++      +.+.|..|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3578999999999999999999999999999998653      356799999999999999999887

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1e-11  Score=111.98  Aligned_cols=103  Identities=14%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             eeEecc-CCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549          138 FNVVTS-EDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF  213 (423)
Q Consensus       138 v~~L~~-~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~  213 (423)
                      |.+++. ++|.+.|   .++.+++|.||+|||++|+.|.|.++++|..+.. ++|.+||+++.+    +..+|+      
T Consensus       101 v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~~----~~~~~~------  169 (217)
T d2trcp_         101 VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTG----AGDRFS------  169 (217)
T ss_dssp             EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHHT----CSTTSC------
T ss_pred             EEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccch----hHHhCC------
Confidence            788865 7798888   2345688999999999999999999999998744 899999998332    556777      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccc---cC-CCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRF---EG-ELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y---~G-~~~~~~l~~fi~~~  252 (423)
                      |+++|||++|++|... .+...+   -| ..+.++|..|+.++
T Consensus       170 i~~lPtl~~yk~G~~v-~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         170 SDVLPTLLVYKGGELI-SNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             GGGCSEEEEEETTEEE-EEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CCCCCeEEEEECCEEE-EEEECccccccccCCHHHHHHHHHHc
Confidence            9999999999999751 111111   12 34678888887765

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=2.9e-09  Score=87.75  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc-cchhhhHHHhhCCCC-------------ccccccCc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIG-------------QIFFRRGL  217 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-~~~~~~~l~~~~~~~-------------~~~~i~~~  217 (423)
                      .+++++|.||++||++|+...|.+.+++++.++... ..|+.. ........+++++..             ..|++.++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~-v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTF-VGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEE-EEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhccccc-ccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            468999999999999999999999999998866433 333332 222223334444331             45669999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      |+.+++..++.    ...+.|..+.++|.+.+.+
T Consensus       103 P~~~iiD~~G~----i~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1         103 PAYAFVDPHGN----VDVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             SEEEEECTTCC----EEEEESCCCHHHHHHHHHH
T ss_pred             CeEEEECCCCe----EEEEECCCCHHHHHHHHHh
Confidence            99999955443    2345688999999888765

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.86  E-value=4e-09  Score=87.86  Aligned_cols=92  Identities=17%  Similarity=0.082  Sum_probs=68.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch-------------------------hhhHHHh
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR-------------------------LATHLAE  204 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~-------------------------~~~~l~~  204 (423)
                      -.+++++|.|||+||++|++..|.+.++.++++.. +.+..|......                         ....+++
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence            45789999999999999999999999999988754 455555543110                         1224556


Q ss_pred             hCCCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          205 RKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       205 ~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      .|+      +.++|+++++ ++|+.    ...+.|..+.+.+.+++++.
T Consensus       101 ~~~------v~~~P~~~liD~~G~i----~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1         101 SLN------ISVYPSWALIGKDGDV----QRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             HTT------CCSSSEEEEECTTSCE----EEEEESCCCHHHHHHHHHCT
T ss_pred             HcC------CCccCEEEEECCCCEE----EEEEECCCCHHHHHHHHHHH
Confidence            666      8999999999 44543    34567999999999988754

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.5e-09  Score=89.74  Aligned_cols=69  Identities=10%  Similarity=0.101  Sum_probs=50.9

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHH--hhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL--LEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC  227 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~--l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~  227 (423)
                      .+++++||.|||+||++|+++.|.+.+..+.  +...+....||+++...   ++..+. .    ..++||++++.+++
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~---~~~~~~-~----~~~~Pt~~~~d~~G   93 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK---DEDFSP-D----GGYIPRILFLDPSG   93 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCS---CGGGCT-T----CSCSSEEEEECTTS
T ss_pred             HcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHH---HHHHHh-h----cccceeEEEECCCC
Confidence            6799999999999999999999999776543  23346778999884433   444332 1    44789999996543

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=2.1e-08  Score=83.50  Aligned_cols=98  Identities=15%  Similarity=0.117  Sum_probs=70.0

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc------hhhhHHHhhCCCC------------ccc
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI------RLATHLAERKPIG------------QIF  212 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~------~~~~~l~~~~~~~------------~~~  212 (423)
                      ..+++++|.||++||++|+...|.+.++.+.+++.+.+..|+.+..      ....+..+++++.            ..|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            5688999999999999999999999999999988778877776411      0112233444432            345


Q ss_pred             cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      ++.++|+++++-+.+..   ...+.|..+.+.+.+-+.+
T Consensus       107 ~v~~~P~~~~id~~G~i---~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         107 ENEYVPAYYVFDKTGQL---RHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CCCCSSEEEEECTTCBE---EEEEESCSTTHHHHHHHHH
T ss_pred             CCCcCCEEEEECCCCEE---EEEEECCCCHHHHHHHHHh
Confidence            58899999888444331   2355688888888776654

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.4e-08  Score=85.20  Aligned_cols=97  Identities=12%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             CCccccc----CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549          144 EDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG  216 (423)
Q Consensus       144 ~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~  216 (423)
                      .+|++.+    +.++++||+||++||+.|+.|...-   +++.+.++....+..||.+.. ....++++|+      |.+
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~-e~~~~~~~y~------v~~  101 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSE-EGQRYIQFYK------LGD  101 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSH-HHHHHHHHHT------CCS
T ss_pred             CCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccch-hhhhhhhhee------cCc
Confidence            3555555    5689999999999999999998733   456666776777888887643 3466899999      889


Q ss_pred             ccEEEEeCC--CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          217 LPSLVAFPP--GCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       217 ~Pti~~f~~--g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      +|++.++.+  |+.    . ..-|..+++++++.+.+.
T Consensus       102 ~Pti~~idp~~ge~----v-~~~~~~~~~~fl~~L~~f  134 (147)
T d2dlxa1         102 FPYVSILDPRTGQK----L-VEWHQLDVSSFLDQVTGF  134 (147)
T ss_dssp             SSEEEEECTTTCCC----C-EEESSCCHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCeE----e-cccCCCCHHHHHHHHHHH
Confidence            999999964  333    2 333667888888777665

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3e-08  Score=78.91  Aligned_cols=104  Identities=14%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP  340 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~  340 (423)
                      +++.+..+.|+...+   +.|+ ||.+..+.....+..+|..+. .+.|+++.     ..+++++++++ .|+|++||+.
T Consensus         5 l~~~~~~e~f~~~~~---v~VVGfF~~~~~~~~~~F~~~A~~~~-d~~F~~t~-----~~~v~~~~~v~-~~~Ivl~k~~   74 (110)
T d1bjxa_           5 LPDGAAAESLVESSE---VAVIGFFKDVESDSAKQFLQAAEAID-DIPFGITS-----NSDVFSKYQLD-KDGVVLFKKF   74 (110)
T ss_dssp             CCSHHHHHHHHHHSS---EEEEEECTTTTSHHHHHHHHHHHHCS-SSCEEEEC-----CSHHHHHTTCS-SCEEEEEESS
T ss_pred             cCCHHHHHHHhccCC---eEEEEEEcCCCchHHHHHHHHHHhCc-CceEEEEC-----CHHHHHHcCCC-CCeEEEeccC
Confidence            455555788887654   5555 554332233455677888874 57888874     34588999996 4999999998


Q ss_pred             CcceeEecCCCChhHHHHHHHhhccccCccccccc
Q 014549          341 GVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT  375 (423)
Q Consensus       341 ~~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~~~  375 (423)
                      +.....|.|+++.+.|.+||..+.+|++.+++..+
T Consensus        75 de~~~~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~  109 (110)
T d1bjxa_          75 DEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQT  109 (110)
T ss_dssp             SSSBCCCCSCCCHHHHHHHHHHHSSCCCSSCCCTT
T ss_pred             CccccccCCCCCHHHHHHHHHHcCcCcEEecCCCC
Confidence            88888889999999999999999999999998765

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=1.9e-08  Score=82.79  Aligned_cols=98  Identities=11%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCC------------ccccccCcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIG------------QIFFRRGLP  218 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~------------~~~~i~~~P  218 (423)
                      .+++++|.||++||++|+...|.+++++++.++ +.+..|+.+++. .....++++++.            ..|+|.++|
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P  101 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCC
Confidence            468999999999999999999999999987654 455566654321 122233333332            334599999


Q ss_pred             EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       219 ti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      +++++.+++... -.....|..+.++|.+-+..
T Consensus       102 ~~~lid~~G~i~-~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         102 AFVFYRADGTST-FVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             EEEEECTTSCEE-EECCSSSCCCHHHHHHHHHH
T ss_pred             EEEEEeCCCeEE-EEeccCCCCCHHHHHHHHHc
Confidence            999996554310 01122477888888887653

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.9e-08  Score=82.95  Aligned_cols=91  Identities=15%  Similarity=0.079  Sum_probs=62.2

Q ss_pred             cCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--------------------hhhHHHhhCCCC
Q 014549          150 FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIG  209 (423)
Q Consensus       150 v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--------------------~~~~l~~~~~~~  209 (423)
                      +..+++++|.|||+||++|++-.|.++++++.  + +.+..++-+.+.                    ....+++.|+  
T Consensus        17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~--~-~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--   91 (136)
T d1z5ye1          17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG--   91 (136)
T ss_dssp             HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT--T-CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHT--
T ss_pred             HcCCCEEEEEEEcCcCCCcCccccchhhhhhh--h-hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcc--
Confidence            35789999999999999999999999988653  2 222223322110                    1123555666  


Q ss_pred             ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          |.++|+.+++-+++..   ...+.|..+.+.+.+.+.+.
T Consensus        92 ----v~~~P~~~liD~~G~i---~~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          92 ----VYGAPETFLIDGNGII---RYRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             ----CCSBSEEEEECTTSCE---EEEEESCCCHHHHHHHTHHH
T ss_pred             ----cCCcceEEEEcCCCEE---EEEEEcCCCHHHHHHHHHHH
Confidence                8999998888554432   34567998888888777655

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.62  E-value=7.6e-08  Score=79.28  Aligned_cols=97  Identities=10%  Similarity=0.161  Sum_probs=70.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch-hhhHHHhhCCCC------------ccccccCc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR-LATHLAERKPIG------------QIFFRRGL  217 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~-~~~~l~~~~~~~------------~~~~i~~~  217 (423)
                      .+++++|.||++||++|+...|.+.++.+.+... +.+..|+++++. ......+++++.            ..|.+.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            4678999999999999999999999999998765 678888876432 222233443331            44558999


Q ss_pred             cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                      |+++++-+++..   ...+.|..+.+.+.+++..
T Consensus       104 P~~~liD~~G~i---~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         104 PTTFLINPEGKV---VKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             CEEEEECTTSEE---EEEEESCCCHHHHHHHHHH
T ss_pred             ceEEEECCCCEE---EEEEECCCCHHHHHHHHHh
Confidence            999998665542   3355698888888777643

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.57  E-value=3.9e-08  Score=81.88  Aligned_cols=92  Identities=9%  Similarity=-0.013  Sum_probs=62.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch------------------hhhHHHhhCCCCcccc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR------------------LATHLAERKPIGQIFF  213 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~------------------~~~~l~~~~~~~~~~~  213 (423)
                      .+++++|.||++||++|+...|.+.++.+.....+....++-....                  ....+.+.|+      
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------  103 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWG------  103 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTT------
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcC------
Confidence            4689999999999999999999999887655422211111111000                  1233566666      


Q ss_pred             ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                      |.++|+.+++-..+..   ...+.|..+.+++.+.+.+.
T Consensus       104 v~~~P~~~liD~~G~i---~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         104 VYGVPETFVVGREGTI---VYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             CCSSCEEEEECTTSBE---EEEEESCCCHHHHHHTHHHH
T ss_pred             ccccceEEEEcCCCeE---EEEEeCCCCHHHHHHHHHHH
Confidence            9999998888544332   34566999999998888765

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.1e-08  Score=80.10  Aligned_cols=82  Identities=11%  Similarity=0.060  Sum_probs=64.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      ++..+.++.|+++||+.|+.+.|.+++++..+.  .++..+|.+   ...+|.++|+      ++ +|+|.+  +|+.  
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~---~~~~l~~~y~------~~-VPvl~i--dg~~--   76 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLP---ENSTWYERYK------FD-IPVFHL--NGQF--   76 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSS---TTHHHHHHSS------SS-CSEEEE--SSSE--
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccc---cCHHHHHHhc------cc-CCceee--cCce--
Confidence            567788999999999999999999988876554  456666776   4456999998      76 898765  5644  


Q ss_pred             CCcccccCCCCHHHHHHHHHHh
Q 014549          231 DCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       231 ~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                          ...|..+.+.|.+++.+.
T Consensus        77 ----~~~g~~d~~~L~~~L~~l   94 (100)
T d1wjka_          77 ----LMMHRVNTSKLEKQLRKL   94 (100)
T ss_dssp             ----EEESSCCHHHHHHHHHSS
T ss_pred             ----EEeCCCCHHHHHHHHHHH
Confidence                456889999999999764

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.53  E-value=6.8e-08  Score=80.57  Aligned_cols=68  Identities=9%  Similarity=0.030  Sum_probs=53.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc--ceEEEEEcccchhh---------------------hHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLA---------------------THLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~--~~~~~Vdc~~~~~~---------------------~~l~~~~~~  208 (423)
                      .+++++|.|||+||++|+...|.+.++.+++...  +.+..|+.+++...                     ..|++.|+ 
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~-  105 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD-  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC-
Confidence            4789999999999999999999999999988653  56777777643211                     12455566 


Q ss_pred             CccccccCccEEEEeCC
Q 014549          209 GQIFFRRGLPSLVAFPP  225 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~~  225 (423)
                           |+++||++++-+
T Consensus       106 -----v~~iPt~~lid~  117 (144)
T d1i5ga_         106 -----VKSIPTLVGVEA  117 (144)
T ss_dssp             -----CCSSSEEEEEET
T ss_pred             -----CCCcCEEEEEeC
Confidence                 999999999864

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.51  E-value=2.3e-07  Score=72.36  Aligned_cols=96  Identities=11%  Similarity=0.143  Sum_probs=71.5

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG  341 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~  341 (423)
                      |++.+.++.|+... +...+|.||.+..+.....+..+|..+++.+.|+++.     +.++++++|++ .|+|++||+.+
T Consensus         4 i~~~~e~~~F~~~~-d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t~-----d~~va~~~~v~-~~~vvlfr~fd   76 (102)
T d1a8ya2           4 IEGERELQAFENIE-DEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTLK-LNEIDFYEAFM   76 (102)
T ss_dssp             ECSHHHHHHHTTCC-SSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEEC-----CHHHHHHHCCC-TTCEEEECTTC
T ss_pred             ecCHHHHHHHhccC-CCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEEC-----CHHHHHHcCCC-CCCEEEeeecC
Confidence            45555577888632 1224555665432223445566888888889999974     46799999995 79999999999


Q ss_pred             cceeEecCC-CChhHHHHHHHhhc
Q 014549          342 VKPVVYYGS-FNNSRLSEVMEQNK  364 (423)
Q Consensus       342 ~~~~~y~g~-~~~~~l~~fi~~~~  364 (423)
                      ..++.|.|+ .+.++|..||..|+
T Consensus        77 e~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          77 EEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             SSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             CCceecCCCCCCHHHHHHHHHHhc
Confidence            999999985 89999999999986

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.5e-06  Score=69.58  Aligned_cols=99  Identities=13%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.++ +++++++.  ..++|.|+++.+   ....+.+..++..+.+ .+.|+.|...+  ..+++.+|+|.++|||++|
T Consensus        15 lt~~~-f~~~i~~~--~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti~~f   89 (119)
T d2b5ea4          15 LATDS-FNEYIQSH--DLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE--NQDLCMEHNIPGFPSLKIF   89 (119)
T ss_dssp             CCTTT-HHHHHTTC--SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             cCHHH-HHHHHhcC--CeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccc--hHHHHHHhccccCCeEEEE
Confidence            66666 56676542  235555666422   2345777778888753 47788875332  3789999999999999999


Q ss_pred             cCCCc-ceeEecCCCChhHHHHHHHhhcc
Q 014549          338 KDPGV-KPVVYYGSFNNSRLSEVMEQNKL  365 (423)
Q Consensus       338 k~~~~-~~~~y~g~~~~~~l~~fi~~~~~  365 (423)
                      +++.. .+..|.|.++.+.|.+||+++.-
T Consensus        90 ~~g~~~~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          90 KNSDVNNSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             ETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             ECCEEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            87644 45678999999999999998643

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.31  E-value=3.8e-07  Score=75.73  Aligned_cols=74  Identities=11%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc--ceEEEEEcccchh-hhHHHhhCCC--------------Cccccc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRL-ATHLAERKPI--------------GQIFFR  214 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~--~~~~~Vdc~~~~~-~~~l~~~~~~--------------~~~~~i  214 (423)
                      .+++++|.|||+||++|+...|...++.+++...  +.+..|+.++... ..+..++.+.              .+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            4789999999999999999999999999988543  5667777653321 1111111110              023448


Q ss_pred             cCccEEEEeCC
Q 014549          215 RGLPSLVAFPP  225 (423)
Q Consensus       215 ~~~Pti~~f~~  225 (423)
                      .++||++++-+
T Consensus       107 ~~~Pt~~lID~  117 (144)
T d1o73a_         107 ESIPTLITINA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CcCCEEEEEEC
Confidence            99999999964

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.31  E-value=1.4e-06  Score=68.40  Aligned_cols=96  Identities=15%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             cccchhhhhhhhhcCCCce-EEEEEecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKV-KVIFFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~-~vl~f~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +|++++....+++   +++ +|.|+++.+ .|  ..|.+..++..+.+.+.|+.+....  .+.++++|+|.++||+++|
T Consensus         7 lt~~~f~~~v~~~---~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           7 ITDAEFESEVLKA---EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CCGGGHHHHTTTC---SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             CCHHHHHHHHHhC---CCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccc--cHHHHHHhcccCCCEEEEE
Confidence            6766643333332   234 455666532 22  3567777888888888888876432  4789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....|.|..+.+.|.+||+++
T Consensus        82 ~~g-~~v~~~~G~~~~~~l~~~i~~~  106 (108)
T d1thxa_          82 KGE-QILDSTEGVISKDKLLSFLDTH  106 (108)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             ECC-EEEEEEeCCCCHHHHHHHHHHh
Confidence            853 4445678999999999999875

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=3.5e-07  Score=79.61  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=59.4

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEccc------c--hhhhHHHhhCCCC------------cc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD------I--RLATHLAERKPIG------------QI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~------~--~~~~~l~~~~~~~------------~~  211 (423)
                      .+++++|.||++||+.|++..|...++++++++.+.+..|+...      +  .......+++++.            ..
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            35789999999999999999999999999998877777776421      0  0111222332221            33


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCCC
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELS  241 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~  241 (423)
                      |++.++|+++++-+...     ..|.|..+
T Consensus       111 ~~v~~~P~~~liD~~G~-----i~y~G~id  135 (187)
T d2cvba1         111 YRALRTPEVFLFDERRL-----LRYHGRVN  135 (187)
T ss_dssp             TTCCEESEEEEECTTCB-----EEEEECSS
T ss_pred             ccccceeeEEEEcCCCe-----EEEEeeec
Confidence            44999999999977654     37877543

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.23  E-value=3.6e-06  Score=67.82  Aligned_cols=94  Identities=14%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCCCC--CchHH-------HHHHHhccc-cceEEEEEccccc-cHHHHhhcCCCC
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTGER--ASPFV-------RQISRNYWA-YASFAFVLWREEE-SSIWWNTFEVES  330 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~--~~~~~-------~~~a~~~~~-~~~f~~v~~~~~~-~~~l~~~f~v~~  330 (423)
                      +++.+ +++++.+.  ..++|.|+.+.+.+  ..+.+       ..+|..+.+ .+.|+.|+   |+ ...++++|+|.+
T Consensus        16 L~~~n-f~~~l~~~--~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd---~~~~~~l~~~~~I~~   89 (124)
T d1a8ya1          16 VNAKN-YKNVFKKY--EVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVD---SEKDAAVAKKLGLTE   89 (124)
T ss_dssp             CCTTT-HHHHHHHC--SEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEE---TTTSHHHHHTTTCCS
T ss_pred             CCHHH-HHHHHHhC--CeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEE---eecccchhhcccccc
Confidence            66666 57777653  23677777765432  11222       223433332 35666664   43 378999999999


Q ss_pred             CCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549          331 APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       331 ~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +|||++|+++  +++.|.|.++.+.|.+||.+.
T Consensus        90 yPTi~~f~~g--~~~~y~G~r~~~~l~~fi~~~  120 (124)
T d1a8ya1          90 EDSIYVFKED--EVIEYDGEFSADTLVEFLLDV  120 (124)
T ss_dssp             TTCEEEEESS--SEEECCSCCSHHHHHHHHHHH
T ss_pred             CCcEEEeccC--ccEEeeCCCCHHHHHHHHHHh
Confidence            9999999865  567899999999999999873

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.19  E-value=1.3e-06  Score=72.06  Aligned_cols=68  Identities=7%  Similarity=0.016  Sum_probs=52.5

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc--ceEEEEEcccchh---------------------hhHHHhhCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRL---------------------ATHLAERKPI  208 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~--~~~~~Vdc~~~~~---------------------~~~l~~~~~~  208 (423)
                      .+++++|.||++||++|+...|.+.++.+++...  +.+..|+.+++..                     ...+.+.|+ 
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~-  103 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN-  103 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT-
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcC-
Confidence            4789999999999999999999999999998654  5566666553211                     123555666 


Q ss_pred             CccccccCccEEEEeCC
Q 014549          209 GQIFFRRGLPSLVAFPP  225 (423)
Q Consensus       209 ~~~~~i~~~Pti~~f~~  225 (423)
                           |.++||++++-.
T Consensus       104 -----v~~~Pt~~liD~  115 (144)
T d1o8xa_         104 -----VESIPTLIGVDA  115 (144)
T ss_dssp             -----CCSSSEEEEEET
T ss_pred             -----CCcCCEEEEEeC
Confidence                 999999999964

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.6e-06  Score=68.01  Aligned_cols=101  Identities=17%  Similarity=0.133  Sum_probs=70.3

Q ss_pred             ecccchhhhhhhhhcCCCceEEEEEecC---CCCCchHHHHHHHhccc---cceEEEEEccccccHHHHhhcCCCCCCeE
Q 014549          261 YYTKESMGKNFLAKTGPHKVKVIFFSKT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAI  334 (423)
Q Consensus       261 ~it~~~~~~~fl~~~~~~~~~vl~f~~~---~~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl  334 (423)
                      .++.++ +++.+++..  .++|.|+++.   +....|.+..++..+..   .+.++.+....  ...++.+|+|.++||+
T Consensus        11 ~l~~~~-f~~~l~~~k--~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~   85 (120)
T d1meka_          11 VLRKSN-FAEALAAHK--YLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ECCTTT-HHHHHHHCS--EEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSSEE
T ss_pred             EcCHHH-HHHHHhcCC--cEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc--chhHHHHhCCccCCeE
Confidence            356655 456665432  3455566642   34456778778777653   35666665322  3579999999999999


Q ss_pred             EEecCCCc-ceeEecCCCChhHHHHHHHhhccc
Q 014549          335 VFLKDPGV-KPVVYYGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       335 ~lfk~~~~-~~~~y~g~~~~~~l~~fi~~~~~~  366 (423)
                      ++|+++.. .+..|.|.++.+.|.+||+++.-|
T Consensus        86 ~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p  118 (120)
T d1meka_          86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             EEEECCeEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            99987654 457789999999999999996544

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=7.4e-06  Score=65.71  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecC-CCCCchHHHHHHHhccccce--EEEEEcc--cccc-HHHHhhcC--CCCCCe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKT-GERASPFVRQISRNYWAYAS--FAFVLWR--EEES-SIWWNTFE--VESAPA  333 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~-~~~~~~~~~~~a~~~~~~~~--f~~v~~~--~~~~-~~l~~~f~--v~~~Pt  333 (423)
                      +++.+ +++++.+..  .++|.|+.+. ..+..+.++.+|..+.+...  .+.|...  +++. +.++.+++  |.++||
T Consensus         9 L~~~n-Fd~~i~~~~--~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPT   85 (122)
T d1g7ea_           9 LDTVT-FYKVIPKSK--FVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPV   85 (122)
T ss_dssp             CSHHH-HHHHGGGSS--EEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEE
T ss_pred             CCHHh-HHHHHhhCC--eEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCe
Confidence            55555 577776532  3566665542 23456788888888765433  2344433  4433 67888875  668999


Q ss_pred             EEEecCCCc-ceeEecCCCChhHHHHHHHhhc
Q 014549          334 IVFLKDPGV-KPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       334 l~lfk~~~~-~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      |++|+++.. .++.|.|+++.+.|.+||+++.
T Consensus        86 i~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          86 FYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             EEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred             EEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence            999998764 5688999999999999999974

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.08  E-value=1.4e-05  Score=63.94  Aligned_cols=103  Identities=14%  Similarity=0.025  Sum_probs=71.1

Q ss_pred             ecccchhhhhhhhhcCCCceEEEEEecCC-CCCchHHHHHHHhc---cccceEEEEEcccc---ccHHHHhhcCCC--CC
Q 014549          261 YYTKESMGKNFLAKTGPHKVKVIFFSKTG-ERASPFVRQISRNY---WAYASFAFVLWREE---ESSIWWNTFEVE--SA  331 (423)
Q Consensus       261 ~it~~~~~~~fl~~~~~~~~~vl~f~~~~-~~~~~~~~~~a~~~---~~~~~f~~v~~~~~---~~~~l~~~f~v~--~~  331 (423)
                      .+++.+ +++.+.+.  ..++|.|+.+.+ .|..|.+..+|..+   ...+.++.|...+.   +..+++.+|+|.  ++
T Consensus         6 ~L~~~n-Fd~~v~~~--~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~   82 (122)
T d2c0ga2           6 DLDELS-FEKTVERF--PYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNF   82 (122)
T ss_dssp             ECCTTT-HHHHHTTS--SEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSC
T ss_pred             EcChHh-HHHHHhcC--CcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCC
Confidence            356655 56666543  236676777533 34457777766554   24566777765432   347899999995  69


Q ss_pred             CeEEEecCCCccee--EecCCCChhHHHHHHHhhccc
Q 014549          332 PAIVFLKDPGVKPV--VYYGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       332 Ptl~lfk~~~~~~~--~y~g~~~~~~l~~fi~~~~~~  366 (423)
                      |||++|+++...+.  .|.|+++.++|.+||++|.-.
T Consensus        83 PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          83 PSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             CEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            99999998876654  457999999999999997543

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.08  E-value=6e-06  Score=64.11  Aligned_cols=96  Identities=17%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             cccchhhhhhhhhcCCCce-EEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKV-KVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~-~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +|+.+ +++.+..  ..++ +|.|+++.+   ....|.+..++..+.+...++.+...  +.+.++++|+|.++||+++|
T Consensus         4 l~d~~-f~~~v~~--~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d--~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           4 VNDSS-WKEFVLE--SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD--EAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CCTTT-HHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCSSSEEEEE
T ss_pred             Cchhh-HHHHHHc--CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecc--cchhhhhhcceeeeeEEEEE
Confidence            55555 3443432  2344 444666432   22356677788888877777777543  24789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.|..+.+.|.+||+++
T Consensus        79 ~~G-~~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          79 KNG-ERKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             ETT-EEEEEEEECCCHHHHHHHHHHH
T ss_pred             EcC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            864 4445678999999999999875

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.06  E-value=8.1e-06  Score=69.71  Aligned_cols=98  Identities=14%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc--cchhhhHHHhhCCCC-----------------cc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG--DIRLATHLAERKPIG-----------------QI  211 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~--~~~~~~~l~~~~~~~-----------------~~  211 (423)
                      .+++++|.||++||++|+...+...++.+.+.+. ..+..|+.+  .........+++++.                 .-
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            4689999999999999999999999999888765 466666655  222344456777654                 12


Q ss_pred             ccccCccEEEEeCCCCCCCCCcccccCCC--CHHHHHHHHHHh
Q 014549          212 FFRRGLPSLVAFPPGCKSSDCMTRFEGEL--SVDAVTDWFATA  252 (423)
Q Consensus       212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~--~~~~l~~fi~~~  252 (423)
                      +.+.++|+.+++-.+...   ...+.|..  +.++++++|+..
T Consensus       135 ~~v~~~P~~~lID~~G~I---~~~~~G~~~~~~~e~~~~l~al  174 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCE---IATIAGPAEWASEDALKLIRAA  174 (176)
T ss_dssp             TCCSSSSEEEEECTTSBE---EEEEESCCCTTSHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCEE---EEEEECCCCCChHHHHHHHHHh
Confidence            347778998888555442   23466743  557788877654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.06  E-value=7.7e-06  Score=63.61  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEec
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK  338 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk  338 (423)
                      +|+++ +++.+++..  .++|.|+++.+   ....|.+..++.+|.+.+.|+.++...  .+.++++|+|.+.||+++|+
T Consensus         5 lt~~~-f~~~i~~~k--~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~V~~~Pt~~~~~   79 (105)
T d1nw2a_           5 LTDAN-FQQAIQGDK--PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             ECTTT-HHHHTTSSS--CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCBSSEEEEEE
T ss_pred             ECHHH-HHHHHhCCC--cEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCC--CcccHHHCCcceeeEEEEEE
Confidence            56666 455564321  24444665532   223567777888888888888886432  37899999999999999998


Q ss_pred             CCCcceeEecCCCChhHHHHHHHh
Q 014549          339 DPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       339 ~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +|. ....+.|..+.+.|.++|++
T Consensus        80 ~G~-~~~~~~G~~~~~~l~~~i~~  102 (105)
T d1nw2a_          80 GGE-PVKQLIGYQPKEQLEAQLAD  102 (105)
T ss_dssp             TTE-EEEEEESCCCHHHHHHHTTT
T ss_pred             CCE-EEEEEECCCCHHHHHHHHHH
Confidence            644 34467899999999999876

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=7.6e-06  Score=63.96  Aligned_cols=96  Identities=15%  Similarity=0.289  Sum_probs=65.9

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +|++++....++   .++++++ |+++.+ .|  ..+.+..++..+...+.++.+...+  .+.++++|+|.++||+++|
T Consensus         7 lt~~~f~~~v~~---~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~PT~~~~   81 (108)
T d2trxa_           7 LTDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             CCTTTHHHHTTT---CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CTTHHHHTTCCSSSEEEEE
T ss_pred             CCHHHHHHHHHh---CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccc--hhhHHHHhCCCcEEEEEEE
Confidence            666553333333   2345555 555422 22  3466666777877777777776432  3679999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....|.|..+.+.|.+||+++
T Consensus        82 ~~G-~~v~~~~G~~~~~~l~~~i~~~  106 (108)
T d2trxa_          82 KNG-EVAATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHHH
T ss_pred             ECC-EEEEEEeCCCCHHHHHHHHHHh
Confidence            864 4445678999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.05  E-value=6.6e-06  Score=64.23  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=66.9

Q ss_pred             cccchhhhhhhhhcCCCceEE-EEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKV-IFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~v-l~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ||+++ +++.+..  .++|++ .|+++.+   ....|.+..++.++.+...++.+....  .++++++|+|.++||+++|
T Consensus         6 i~~~~-f~~~v~~--s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           6 VNDDT-FKNVVLE--SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             ECHHH-HHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEE
T ss_pred             ecHHH-HHHHHHh--CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEeccc--chhHHHHhcccceEEEEEE
Confidence            55554 3443332  234544 4666532   223566677888888888888876432  3789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++ .....+.|..+.+.|.+||+++
T Consensus        81 ~~G-~~v~~~~G~~~~~~l~~~i~~~  105 (107)
T d1dbya_          81 KGG-KKCETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             SSS-SEEEEEESCCCHHHHHHHHHHH
T ss_pred             ECC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            864 4455678999999999999885

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.02  E-value=9.2e-07  Score=70.26  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccccce--EEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAYAS--FAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~--f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +|.++ +++++.. ....++|.|+++.+   ....|.+..+|..+.....  +..+...+  ...++.+++|.++|||++
T Consensus         7 lt~~n-F~~~v~~-~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~Pti~~   82 (116)
T d2djja1           7 VVAKN-YNEIVLD-DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVD--ATANDVPDEIQGFPTIKL   82 (116)
T ss_dssp             CCTTT-TTTSSSC-TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEE--TTTSCCSSCCSSSSEEEE
T ss_pred             cccCC-HHHHHhc-CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecc--cchhhhcccccCCCEEEE
Confidence            56555 3444322 12235677777532   3356778888887754321  12222222  234567899999999999


Q ss_pred             ecCCCc-ceeEecCCCChhHHHHHHHhhc
Q 014549          337 LKDPGV-KPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       337 fk~~~~-~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      |+++.. .++.|.|.++.+.|.+||++|.
T Consensus        83 f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          83 YPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             ECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            987654 4567899999999999999864

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=3.8e-06  Score=69.11  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=66.9

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhcccc---ceEEEEEccccccHHHHhhcCCCCCCeEE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIV  335 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~  335 (423)
                      ++..+ +++++... ...++|.|+++.+   ....|.+..+|..|.+.   +.++.+   ++ ...++++|+|.++|||+
T Consensus        17 l~~~n-f~~~v~~~-~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~---d~-~~~~~~~~~v~~~Ptl~   90 (140)
T d2b5ea1          17 LVGKN-HDEIVNDP-KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL---DH-TENDVRGVVIEGYPTIV   90 (140)
T ss_dssp             ECTTT-HHHHHHCT-TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE---EG-GGCCCSSCCCSSSSEEE
T ss_pred             ecCcC-HHHHHhcC-CCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEee---ec-cchhccccccccCCeEE
Confidence            56655 45555321 1225666776532   33457778788777543   333333   23 24589999999999999


Q ss_pred             EecCCCc-ceeEecCCCChhHHHHHHHhhccc
Q 014549          336 FLKDPGV-KPVVYYGSFNNSRLSEVMEQNKLQ  366 (423)
Q Consensus       336 lfk~~~~-~~~~y~g~~~~~~l~~fi~~~~~~  366 (423)
                      +|+++.. .++.|.|.++.+.|.+||++|...
T Consensus        91 ~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~  122 (140)
T d2b5ea1          91 LYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  122 (140)
T ss_dssp             EECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             EEECCEEcceeEeCCCCCHHHHHHHHHHcCCC
Confidence            9987654 467799999999999999997543

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.97  E-value=9.4e-06  Score=64.08  Aligned_cols=99  Identities=19%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             cccchhhhhhhhh-cCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAK-TGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~-~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      +++.+.+++.+.. ...++++++ |+++.+   ....|.+..++.++.+.+.|+.+...+  .+.++++|+|.+.||+++
T Consensus         7 i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~   84 (112)
T d1ep7a_           7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHV   84 (112)
T ss_dssp             ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEE
T ss_pred             EeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccc--cccccccccccCCCEEEE
Confidence            5433333444433 223445555 444432   224677788898888778888876432  478999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHhhc
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQNK  364 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~~~  364 (423)
                      |+++ .....+.| .+.+.|.+||++|.
T Consensus        85 ~~~G-~~v~~~~G-~~~~~l~~~i~k~~  110 (112)
T d1ep7a_          85 YKDG-VKADDLVG-ASQDKLKALVAKHA  110 (112)
T ss_dssp             EETT-EEEEEEES-CCHHHHHHHHHHHH
T ss_pred             EECC-EEEEEEeC-cCHHHHHHHHHHHh
Confidence            9864 33344567 48899999999863

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.83  E-value=4.6e-05  Score=59.69  Aligned_cols=97  Identities=25%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +.+.+.++..+... .++++++ |+++.+   ....|.+..++.+|.+.+.++.+...+  .++++++|+|.+.||+++|
T Consensus        10 i~~~~~~~~~l~~~-~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~--~~~l~~~~~V~~~Pt~~~~   86 (111)
T d1xwaa_          10 VKDKADLDGQLTKA-SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFL   86 (111)
T ss_dssp             CCSHHHHHHHHHHH-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             ECCHHHHHHHHHhc-CCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeec--CcchhhcCCCccccEEEEE
Confidence            55544455555543 3445555 555432   234577788888888777777775432  4789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++. ....+.|. +.+.|.+||++|
T Consensus        87 ~~G~-~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          87 KNGV-KVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHHT
T ss_pred             ECCE-EEEEEeCC-CHHHHHHHHHhc
Confidence            8643 34456775 557899999986

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.79  E-value=4.6e-05  Score=58.85  Aligned_cols=94  Identities=21%  Similarity=0.294  Sum_probs=63.6

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++++++..   ++|+ |+++.+   ....|.+..++.+|. ...|+.+...+  .++++++|+|.+.||+++|
T Consensus         5 i~s~~~f~~~i~~~~---~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-~~~~~~vd~d~--~~~~~~~~~V~~~Pt~i~~   78 (103)
T d1syra_           5 VTSQAEFDSIISQNE---LVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDE--VSEVTEKENITSMPTFKVY   78 (103)
T ss_dssp             ECSHHHHHHHHHHCS---EEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTT--THHHHHHTTCCSSSEEEEE
T ss_pred             eCCHHHHHHHHhCCC---cEEEEEeCCcccCcccccccchhhhhccc-ceEEEeecccc--CcceeeeeeeecceEEEEE
Confidence            445444677776533   5554 555432   223567777888875 45677765432  3789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      ++|. .-..+.|. +.+.|.+||++|
T Consensus        79 k~G~-~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          79 KNGS-SVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHTT
T ss_pred             ECCE-EEEEEeCc-CHHHHHHHHHhh
Confidence            8643 33456774 678899999875

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.76  E-value=1.2e-05  Score=68.11  Aligned_cols=68  Identities=12%  Similarity=0.014  Sum_probs=50.1

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      .++..++.|+++||++|++..|..+++++... .+.+..|+.+   ...+..+++...   ....+|.++++...
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d---~~~~~~~~~~~~---~~~~~p~~~~~d~~  120 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKG---RAEDDLRQRLAL---ERIAIPLVLVLDEE  120 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHH---HHHHHTTTTTTC---SSCCSSEEEEECTT
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECc---cCHHHHHHHHHh---ccccccceeecCcc
Confidence            45677888999999999999999999998765 4677778877   344566666310   14567888777544

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00017  Score=56.10  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=62.0

Q ss_pred             hhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcc
Q 014549          268 GKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~  343 (423)
                      +++.+.... ++++|+ |+++.+   ....|.+..++.++. .+.|..+...  +.++++++|+|.+.||+++|+++. .
T Consensus        12 f~~~l~~~~-~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-~~~f~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~-~   86 (107)
T d1gh2a_          12 FQPELSGAG-SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVH--QCQGTAATNNISATPTFQFFRNKV-R   86 (107)
T ss_dssp             HHHHHHHTT-TSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TSHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred             HHHHHHhCC-CCEEEEEEECCCCCCccccchhhhccccccc-cccccccccc--cchhhhhhcCceeceEEEEEECCE-E
Confidence            566665432 445555 555432   224677788888875 4677777543  247899999999999999998654 3


Q ss_pred             eeEecCCCChhHHHHHHHhh
Q 014549          344 PVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       344 ~~~y~g~~~~~~l~~fi~~~  363 (423)
                      -..+.| .+.+.|.++|+++
T Consensus        87 v~~~~G-~~~~~l~~~i~k~  105 (107)
T d1gh2a_          87 IDQYQG-ADAVGLEEKIKQH  105 (107)
T ss_dssp             EEEEES-SCHHHHHHHHHHH
T ss_pred             EEEEeC-CCHHHHHHHHHHh
Confidence            344577 4888999999885

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.61  E-value=7.3e-05  Score=58.74  Aligned_cols=84  Identities=20%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             CCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCC
Q 014549          276 GPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (423)
Q Consensus       276 ~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~  351 (423)
                      ..++++|+ |+++.+   ....|.+..++.++. ...|+.+...  +.+.++.+|+|.+.||+++|+++. .-..+.| .
T Consensus        24 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d--~~~~l~~~~~I~~~Pt~~~~k~G~-~v~~~~G-~   98 (113)
T d1ti3a_          24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVD--ELKAVAEEWNVEAMPTFIFLKDGK-LVDKTVG-A   98 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETT--TCHHHHHHHHCSSTTEEEEEETTE-EEEEEEC-C
T ss_pred             cCCCEEEEEEEcCccccchhhhhhhhhhhccCC-CceEEeeeee--ccccccccCeecccceEEEEECCE-EEEEEcC-C
Confidence            34556666 444422   224566777888774 4566666532  247899999999999999998553 3333456 5


Q ss_pred             ChhHHHHHHHhhc
Q 014549          352 NNSRLSEVMEQNK  364 (423)
Q Consensus       352 ~~~~l~~fi~~~~  364 (423)
                      +.+.|.+||.+|.
T Consensus        99 ~~~~l~~~i~k~a  111 (113)
T d1ti3a_          99 DKDGLPTLVAKHA  111 (113)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7889999999863

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.60  E-value=5.5e-05  Score=61.31  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549          138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL  217 (423)
Q Consensus       138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~  217 (423)
                      |.++|.+|+..+.++..+.++.|+++. .....+...+.++|+++++.+.|+.+|.+++   ....+.+|+.    ...+
T Consensus         8 v~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~---~~~l~~~gl~----~~~~   79 (133)
T d2djka1           8 IGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAF---GAHAGNLNLK----TDKF   79 (133)
T ss_dssp             SEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTT---GGGTTTTTCC----SSSS
T ss_pred             eeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHh---HHHHHHhcCC----cccC
Confidence            577999999998888888888888764 4567889999999999999999999998843   4467778844    4678


Q ss_pred             cEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549          218 PSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA  252 (423)
Q Consensus       218 Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~  252 (423)
                      |.++++......   ...|  .+..+.++|.+|+.+.
T Consensus        80 P~~~i~~~~~~~---~~~~~~~~~i~~~~i~~Fi~d~  113 (133)
T d2djka1          80 PAFAIQEVAKNQ---KFPFDQEKEITFEAIKAFVDDF  113 (133)
T ss_dssp             SEEEEECTTTCC---BCCCCSSSCCCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCc---eecCCccccCCHHHHHHHHHHH
Confidence            999988654332   2234  3678999999999887

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.60  E-value=0.00021  Score=55.96  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=62.8

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      ++.++ +.++++.. .++++++ |+.+.+   ....|.+..++.+|.+ +.|+.+... .+.++++++|+|.+.||+++|
T Consensus        11 ~~~d~-f~~~l~~~-~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~-~~~~~l~~~~~V~~~Pt~~~~   86 (112)
T d1f9ma_          11 VNKDT-FWPIVKAA-GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCN-QENKTLAKELGIRVVPTFKIL   86 (112)
T ss_dssp             ECTTT-HHHHHHTC-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECS-STTHHHHHHHCCSSSSEEEEE
T ss_pred             eCHHH-HHHHHHHc-CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeeccccc-ccchhhHhheeeccCCEEEEE
Confidence            55544 55666543 2345555 444422   2235777888888754 566666532 234789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHhh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      +++. .-..+.|. +.+.|.++|++.
T Consensus        87 k~G~-~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          87 KENS-VVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             ETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             ECCE-EEEEEeCC-CHHHHHHHHHHc
Confidence            8543 33456775 667888999875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.59  E-value=0.0001  Score=54.55  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             eEEE-EEec---CCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549          280 VKVI-FFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR  355 (423)
Q Consensus       280 ~~vl-~f~~---~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~  355 (423)
                      +.|+ |+++   .+....|.+..++..+.....+..+...  +.++++++|+|.++||+++++++     .+.|..+.+.
T Consensus         4 v~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d--~~~~la~~~~V~~~Pt~~i~~~g-----~~~G~~~~~~   76 (85)
T d1fo5a_           4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVM--ENPQKAMEYGIMAVPTIVINGDV-----EFIGAPTKEA   76 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESS--SSCCTTTSTTTCCSSEEEETTEE-----ECCSSSSSHH
T ss_pred             eEEEEEECCCCcChHhhhhhcccccccccccccccccccc--ccccccccCCceEeeEEEEECCc-----EEECCCCHHH
Confidence            4444 4454   2344567788888887766666665432  23679999999999999987643     3568889999


Q ss_pred             HHHHHHhh
Q 014549          356 LSEVMEQN  363 (423)
Q Consensus       356 l~~fi~~~  363 (423)
                      |.+||+++
T Consensus        77 l~~~i~~~   84 (85)
T d1fo5a_          77 LVEAIKKR   84 (85)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00026  Score=54.60  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      +++.+.+++.+... .++++|+ |+++.+   ....|.+..++..+. ...|+.+...  +.++++++|+|.+.||+++|
T Consensus         5 i~s~~~f~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~d--~~~~~~~~~~V~~~Pt~~~~   80 (105)
T d2ifqa1           5 IESKTAFQEALDAA-GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD--DCQDVASECEVKCMPTFQFF   80 (105)
T ss_dssp             ECSHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT--TCHHHHHHTTCCBSSEEEEE
T ss_pred             cCCHHHHHHHHHhC-CCCEEEEEEEcCCccchhhhhhhhhhhccccc-cceeeecccc--cCHhHHHHcCceEEEEEEEE
Confidence            44444456666543 2445555 555432   223566777777775 4457666533  34789999999999999999


Q ss_pred             cCCCcceeEecCCCChhHHHHHHHh
Q 014549          338 KDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       338 k~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +++. ....+.|. +.+.|.++|++
T Consensus        81 ~~G~-~v~~~~G~-~~~~l~~~i~~  103 (105)
T d2ifqa1          81 KKGQ-KVGEFSGA-NKEKLEATINE  103 (105)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHH
T ss_pred             ECCE-EEEEEeCC-CHHHHHHHHHh
Confidence            8643 33456774 77889999986

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.47  E-value=0.00033  Score=54.91  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             CCceeecccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCC
Q 014549          256 LPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESA  331 (423)
Q Consensus       256 ~p~~~~it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~  331 (423)
                      .|+.+-+++.+.+++++++.   +++++ |+++.+   ....|.+..++.++. .+.|+.++..+  .++++++|+|.+.
T Consensus         7 ~p~vi~i~s~~~~~~~~~~~---~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~--~~~l~~~~~V~~~   80 (113)
T d1r26a_           7 YPSVVDVYSVEQFRNIMSED---ILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN--NSEIVSKCRVLQL   80 (113)
T ss_dssp             CSCCEEECCHHHHHHHHHSS---SCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSS
T ss_pred             CCceEEeCCHHHHHHHHcCC---CeEEEEEECCCCccchhhceeccccccccc-ccccccccccc--chhhHHHccccCC
Confidence            45555566655567777543   35555 554432   234677788888874 67888876443  4789999999999


Q ss_pred             CeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       332 Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ||+++|++|.. -..+.|. +.+.+.++|++
T Consensus        81 Pt~~~~~~G~~-v~~~~G~-~~~~l~~~l~~  109 (113)
T d1r26a_          81 PTFIIARSGKM-LGHVIGA-NPGMLRQKLRD  109 (113)
T ss_dssp             SEEEEEETTEE-EEEEESS-CHHHHHHHHHH
T ss_pred             CEEEEEECCEE-EEEEeCC-CHHHHHHHHHH
Confidence            99999986543 2345674 55666666654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.45  E-value=0.00018  Score=56.47  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             CCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549          277 PHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN  352 (423)
Q Consensus       277 ~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~  352 (423)
                      .++++++ |+++.+   ....|.+..++..|. .+.|+.+...  +.+.++++|+|++.||+++|+++. ....+.|. +
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~~--~~~~l~~~~~V~~~Pt~~~~~~G~-~v~~~~G~-~  101 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTD--ELKSVASDWAIQAMPTFMFLKEGK-ILDKVVGA-K  101 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETT--TSHHHHHHTTCCSSSEEEEEETTE-EEEEEESC-C
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhccccc-ccceeEEEee--eceeeccccceeeeEEEEEEECCE-EEEEEeCc-C
Confidence            3456655 555422   223567777887775 3566666432  347899999999999999998653 33345674 7


Q ss_pred             hhHHHHHHHhh
Q 014549          353 NSRLSEVMEQN  363 (423)
Q Consensus       353 ~~~l~~fi~~~  363 (423)
                      .+.|.+||++|
T Consensus       102 ~~~l~~~i~k~  112 (114)
T d1xfla_         102 KDELQSTIAKH  112 (114)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88999999886

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.43  E-value=0.00023  Score=52.72  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=56.3

Q ss_pred             EEEEec---CCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHH
Q 014549          282 VIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE  358 (423)
Q Consensus       282 vl~f~~---~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~  358 (423)
                      .+|+++   .+....|.+..++.+|.+.+.++.++..+  .++++++|+|.+.||++++..     ..|.|..+.+.|.+
T Consensus         6 ~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~~~~~-----~~~~G~~~~~~l~~   78 (85)
T d1nhoa_           6 EVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMAVPAIAINGV-----VRFVGAPSREELFE   78 (85)
T ss_dssp             EEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT--CGGGGGGTCSSCSSEEEETTT-----EEEECSSCCHHHHH
T ss_pred             EEEECCCCcchHHHHHHHhhhccccccccccccccccc--chhhHHhcCceEeCEEEECCc-----EEEEcCCCHHHHHH
Confidence            345553   23445677888999998888888875432  478999999999999887432     24689999999999


Q ss_pred             HHHhh
Q 014549          359 VMEQN  363 (423)
Q Consensus       359 fi~~~  363 (423)
                      ||+++
T Consensus        79 ~i~~~   83 (85)
T d1nhoa_          79 AINDE   83 (85)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99885

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.43  E-value=6.5e-05  Score=59.22  Aligned_cols=67  Identities=12%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             CchHHHHHHHhccccceEEEEEccccc---c-HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHH
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREEE---S-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~---~-~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~  361 (423)
                      ..|.+..++..+...+.  .+......   . +.++++|+|.+.||+++|+++ .....+.|..+.++|.+||.
T Consensus        44 ~~p~l~~~~~~~~~~v~--~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~g-k~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          44 FAGTLSGVVAETKAHIY--FINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG-QINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             HHHHHHHHHHHHCCCCE--EEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETT-EEEEECCTTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhhhh--hheeecccccccccccccccccccccEEEEEECC-EEEEEEcCCCCHHHHHHHHc
Confidence            45777777777655444  34332221   1 578999999999999999864 45667899999999999984

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00048  Score=55.59  Aligned_cols=91  Identities=18%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             hhhhhhhcCCCceEEEEEe-c---CCCCCchHHHHHHHhcccc-ceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCC
Q 014549          268 GKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWAY-ASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPG  341 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~-~---~~~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~  341 (423)
                      ++.++.... .+++++-|. .   .+....|.+..++.+|.+. +.++.|.   ++ .++++++|+|++.||+++|+++ 
T Consensus        27 ~d~~~~~~~-~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd---~d~~~~la~~~~V~~~PT~~~~~~G-  101 (132)
T d2hfda1          27 LDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD---LEQSEAIGDRFGVFRFPATLVFTGG-  101 (132)
T ss_dssp             HHHHHHHCS-EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEEC---HHHHHHHHHHHTCCSCCEEEEEETT-
T ss_pred             HHHHHHhCC-CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEE---ecCCHHHHHhhccCcceeEEEEEcC-
Confidence            667776542 334444333 2   2344678899999988765 3445553   33 4789999999999999999864 


Q ss_pred             cceeEecCCCChhHHHHHHHhh
Q 014549          342 VKPVVYYGSFNNSRLSEVMEQN  363 (423)
Q Consensus       342 ~~~~~y~g~~~~~~l~~fi~~~  363 (423)
                      .....+.|.++.++|.++|+..
T Consensus       102 ~~v~~~~G~~~~~~l~~~i~~l  123 (132)
T d2hfda1         102 NYRGVLNGIHPWAELINLMRGL  123 (132)
T ss_dssp             EEEEEECCCSCHHHHHHHHHHH
T ss_pred             cEeeeecCCCCHHHHHHHHHHH
Confidence            3444678999999999999863

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0002  Score=58.33  Aligned_cols=92  Identities=12%  Similarity=0.132  Sum_probs=59.8

Q ss_pred             hhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcc
Q 014549          268 GKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK  343 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~  343 (423)
                      +++.+... +++++|+ |.++.+   ....|.+..+|.+|.+.+.|+.|...+  .++++++|+|.+.||+++|+++...
T Consensus        13 ~dq~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~--~~~la~~~~I~~~PT~~~f~~g~~i   89 (137)
T d1qgva_          13 VDQAILSE-EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELYDPCTVMFFFRNKHI   89 (137)
T ss_dssp             HHHHHHTC-SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT--CCTTTTSSCSCSSCEEEEEETTEEE
T ss_pred             HHHHHHhC-CCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccc--cchhhhhcCeeeEEEEEEEeCCcEE
Confidence            55555433 3456665 444432   234678888999998888888886433  3689999999999999999876543


Q ss_pred             eeEe--------cCCC-ChhHHHHHHHh
Q 014549          344 PVVY--------YGSF-NNSRLSEVMEQ  362 (423)
Q Consensus       344 ~~~y--------~g~~-~~~~l~~fi~~  362 (423)
                      ...+        .+.+ +.+++.+.|+.
T Consensus        90 ~~~~g~~~~~k~~~~l~~~~~~i~~ie~  117 (137)
T d1qgva_          90 MIDLGTGNNNKINWAMEDKQEMVDIIET  117 (137)
T ss_dssp             EEECC------CCSCCSCHHHHHHHHHH
T ss_pred             EEEecCCCcceeeeehhhhHHHHHHHHH
Confidence            3332        1111 34556666654

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.34  E-value=0.00022  Score=56.63  Aligned_cols=96  Identities=15%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             cccchhhhhhhhhcCCCceEEEEEe-c---CCCCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549          262 YTKESMGKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVF  336 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl~f~-~---~~~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l  336 (423)
                      ++..+ ++.++.... .+++++.|. .   .+....|.+..++.+|.+ .+.++.|..  ...+.++++|+|++.||+++
T Consensus        16 v~~~~-ld~~~~~~~-~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~--d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          16 VEAST-VDDWIKRVG-DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL--EQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             CCCC---------CC-SEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECH--HHHHHHHHTTTCCSSSEEEE
T ss_pred             ecccC-HHHHHHhCC-CcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEEC--CCCHHHHHhcCcCcceEEEE
Confidence            44444 566776532 344444343 2   234457888889988865 455566532  12378999999999999999


Q ss_pred             ecCCCcceeEecCCCChhHHHHHHHh
Q 014549          337 LKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       337 fk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      |+++ .....+.|..+.++|.++|+.
T Consensus        92 ~~~G-~~v~~~~G~~~~~~l~~~i~~  116 (119)
T d2es7a1          92 FTDG-KLRGALSGIHPWAELLTLMRS  116 (119)
T ss_dssp             ESCC-----CEESCCCHHHHHHHHHH
T ss_pred             EEcC-eEEEEeeCCCCHHHHHHHHHH
Confidence            9854 344456899999999999876

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.26  E-value=0.00051  Score=52.84  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=52.6

Q ss_pred             eEEE-EEecC-CCC--CchHHHHHHHh----ccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCC
Q 014549          280 VKVI-FFSKT-GER--ASPFVRQISRN----YWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF  351 (423)
Q Consensus       280 ~~vl-~f~~~-~~~--~~~~~~~~a~~----~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~  351 (423)
                      +.|+ |+++. +.|  ..|.+..+|..    +...+.+..+..  .+.++++++|+|.+.||+++|+++. .-..+.|..
T Consensus        17 v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~--~~~~~l~~~~~V~~vPTi~i~~~G~-~~~~~~G~~   93 (107)
T d1a8la2          17 VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA--IEYPEWADQYNVMAVPKIVIQVNGE-DRVEFEGAY   93 (107)
T ss_dssp             EEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG--GGCHHHHHHTTCCSSCEEEEEETTE-EEEEEESCC
T ss_pred             eEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecc--ccccccccccccccceEEEEEeCCe-EEEEEECCC
Confidence            4444 55542 233  34566555542    323344444432  2237899999999999999998654 345678999


Q ss_pred             ChhHHHHHHHh
Q 014549          352 NNSRLSEVMEQ  362 (423)
Q Consensus       352 ~~~~l~~fi~~  362 (423)
                      +.+.|.+||.+
T Consensus        94 ~~~~~~~~i~~  104 (107)
T d1a8la2          94 PEKMFLEKLLS  104 (107)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999976

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00015  Score=58.04  Aligned_cols=99  Identities=11%  Similarity=0.109  Sum_probs=77.5

Q ss_pred             EeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccE
Q 014549          140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS  219 (423)
Q Consensus       140 ~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pt  219 (423)
                      +++.+|+.+.+.++.+.++.||.+.-. -..+.+.+.++|+.++|.+.|+.+|.+   ......+.+|+.     ...|.
T Consensus         4 ei~~~~~~~y~~~~~Pl~~~f~~~~~~-~~~~~~~~~~vAk~fkgki~Fv~~D~~---~~~~~l~~fgl~-----e~~P~   74 (125)
T d2b5ea3           4 EIDGSVFAQYVESGLPLGYLFYNDEEE-LEEYKPLFTELAKKNRGLMNFVSIDAR---KFGRHAGNLNMK-----EQFPL   74 (125)
T ss_dssp             BCCHHHHHHHHHTTSCEEEEEESSHHH-HHHHHHHHHHHHHHTTTTCEEEEEEHH---HHTTHHHHTTCC-----SCSSE
T ss_pred             ccCHHHHHHHHhcCCCEEEEEeCChHH-HHHHHHHHHHHHHHhcCeeEEEEEchH---HhHHHHHHcCCC-----ccCCc
Confidence            378889999998899999999987533 457899999999999999999999988   445577889832     35799


Q ss_pred             EEEeCCCCCCCCCcccc---------------cCCCCHHHHHHHHHHh
Q 014549          220 LVAFPPGCKSSDCMTRF---------------EGELSVDAVTDWFATA  252 (423)
Q Consensus       220 i~~f~~g~~~~~~~~~y---------------~G~~~~~~l~~fi~~~  252 (423)
                      +.+....+..     .|               .+..+.++|.+|+.+.
T Consensus        75 ~~i~~~~~~~-----ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~  117 (125)
T d2b5ea3          75 FAIHDMTEDL-----KYGLPQLSEEAFDELSDKIVLESKAIESLVKDF  117 (125)
T ss_dssp             EEEEETTTTE-----EEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHH
T ss_pred             EEEEecccCc-----ccccchhhhhhcccccccccCCHHHHHHHHHHH
Confidence            9887543221     22               3678999999999876

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00034  Score=58.06  Aligned_cols=85  Identities=14%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEE---------------------------------------
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMV---------------------------------------  191 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~V---------------------------------------  191 (423)
                      .+.+.++|.|..+.|++|+++.|..+++.+.   .+.+..+                                       
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            4567889999999999999999988887432   1211111                                       


Q ss_pred             -Ecc-cchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549          192 -ELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       192 -dc~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                       .|+ .-..+..+++++|      |+|.||++ +.+|.       .+.|..+.+.|.+++.+.
T Consensus       101 ~~~~~~i~~~~~la~~lg------v~GTPt~~-~~nG~-------~v~G~~~~e~l~~~i~~~  149 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLG------VSGTPAVV-LSNGT-------LVPGYQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHT------CCSSSEEE-CTTSC-------EEESCCCHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcC------CcCCCEEE-EeCCe-------EecCCCCHHHHHHHHHHH
Confidence             111 1113455788888      99999964 45553       567999999999999765

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0006  Score=53.13  Aligned_cols=98  Identities=16%  Similarity=0.229  Sum_probs=73.7

Q ss_pred             CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEe
Q 014549          144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      +..++.+.++++++|=|..+--+   .....|.++|+.+.+ ..+|.+...   .   ++++++      +.. |+|++|
T Consensus         9 ~~~e~f~~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~d-~~F~~t~~~---~---v~~~~~------v~~-~~Ivl~   71 (110)
T d1bjxa_           9 AAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAIDD-IPFGITSNS---D---VFSKYQ------LDK-DGVVLF   71 (110)
T ss_dssp             HHHHHHHHHSSEEEEEECTTTTS---HHHHHHHHHHHHCSS-SCEEEECCS---H---HHHHTT------CSS-CEEEEE
T ss_pred             HHHHHHhccCCeEEEEEEcCCCc---hHHHHHHHHHHhCcC-ceEEEECCH---H---HHHHcC------CCC-CeEEEe
Confidence            45666777888999999876433   346699999999854 688887655   3   788888      755 999999


Q ss_pred             CCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecc
Q 014549          224 PPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYT  263 (423)
Q Consensus       224 ~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it  263 (423)
                      ++....   ...|.|..+.+.|.+|+...  .+|-...++
T Consensus        72 k~~de~---~~~~~~~~~~~~l~~fi~~~--~~PlV~e~~  106 (110)
T d1bjxa_          72 KKFDEG---RNNFEGEVTKENLLDFIKHN--QLPLVIEFT  106 (110)
T ss_dssp             ESSSSS---BCCCCSCCCHHHHHHHHHHH--SSCCCSSCC
T ss_pred             ccCCcc---ccccCCCCCHHHHHHHHHHc--CcCcEEecC
Confidence            986543   45678999999999999988  355544343

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00069  Score=53.53  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=46.5

Q ss_pred             CchHHHHHHHhccccceEEEEEcccc-----ccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHH
Q 014549          292 ASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME  361 (423)
Q Consensus       292 ~~~~~~~~a~~~~~~~~f~~v~~~~~-----~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~  361 (423)
                      ..|.+..++..+.+.+.|+.|.+.+.     ....++++|+|.+.||+++|+++.. -+.+.+ .+.+.|..|++
T Consensus        46 ~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT~i~~~~g~~-l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          46 AEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK-LVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSSCE-EEGGGG-GCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEEEEEEEEECCeE-Eeeeec-CCHHHHHHHhc
Confidence            45777778888887788888876432     1256899999999999999986542 221222 34555666665

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.80  E-value=0.0011  Score=54.57  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=58.0

Q ss_pred             CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE--------------------------------------
Q 014549          151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE--------------------------------------  192 (423)
Q Consensus       151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd--------------------------------------  192 (423)
                      .+.+..++.|..+.|++|+++.++.+++.+.   ...+..+.                                      
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~  100 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  100 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHHHHHHhcc---CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccc
Confidence            4466788999999999999999988777542   11111111                                      


Q ss_pred             --ccc-chhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549          193 --LGD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT  251 (423)
Q Consensus       193 --c~~-~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~  251 (423)
                        |.+ -..+..+++++|      |+|.||+++ .+|.       ...|..+.+.|.+.+.+
T Consensus       101 ~~~~~~i~~~~~la~~lG------v~GTPt~~~-~nG~-------~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQFG------VRGTPSIVT-STGE-------LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CCCSSHHHHHHHHHHHHT------CCSSCEEEC-TTSC-------CCCSCCCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHhcC------cCCCCEEEE-cCCc-------EecCCCCHHHHHHHHHh
Confidence              110 112455788888      999999774 4553       46799999999998865

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.71  E-value=0.0019  Score=49.42  Aligned_cols=89  Identities=9%  Similarity=0.059  Sum_probs=68.9

Q ss_pred             CcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEe
Q 014549          145 DFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF  223 (423)
Q Consensus       145 nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f  223 (423)
                      +.+..++ .+++.+|=|+.+--+   .....|.++|+.+.+.+.||.+...   .   ++++++      ++ .|+|++|
T Consensus         9 e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd~~~F~~t~d~---~---va~~~~------v~-~~~vvlf   72 (102)
T d1a8ya2           9 ELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATFDS---K---VAKKLT------LK-LNEIDFY   72 (102)
T ss_dssp             HHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHTTTSCEEEECCH---H---HHHHHC------CC-TTCEEEE
T ss_pred             HHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcCCCceEEEECCH---H---HHHHcC------CC-CCCEEEe
Confidence            3555565 567888888875333   3567999999999988899998755   3   888988      74 7999999


Q ss_pred             CCCCCCCCCcccccCC-CCHHHHHHHHHHh
Q 014549          224 PPGCKSSDCMTRFEGE-LSVDAVTDWFATA  252 (423)
Q Consensus       224 ~~g~~~~~~~~~y~G~-~~~~~l~~fi~~~  252 (423)
                      ++-...   ...|.|. .+.++|..|+..+
T Consensus        73 r~fde~---~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          73 EAFMEE---PVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             CTTCSS---EEECSSSSCCHHHHHHHHHHT
T ss_pred             eecCCC---ceecCCCCCCHHHHHHHHHHh
Confidence            986442   5688885 8999999999876

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.69  E-value=0.0012  Score=54.38  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             CCCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          151 HDSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       151 ~~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      ..++++++.|| +.||++|..-.|.+.++.+.+++. +.+..|..+
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d   73 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD   73 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESS
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhccccccccccccccccccc
Confidence            46788999999 899999999999999888887765 466666544

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.58  E-value=0.0022  Score=53.25  Aligned_cols=32  Identities=9%  Similarity=0.046  Sum_probs=27.3

Q ss_pred             CCcEEEEEecCCCccccccHHHHHHHHHHhhc
Q 014549          153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG  184 (423)
Q Consensus       153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~  184 (423)
                      ..+.+++|..+.|+||+++.|...++.+.+..
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~   55 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVK   55 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhcc
Confidence            45578999999999999999999998877644

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.45  E-value=0.0032  Score=45.33  Aligned_cols=72  Identities=18%  Similarity=0.235  Sum_probs=54.8

Q ss_pred             EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccccc
Q 014549          158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE  237 (423)
Q Consensus       158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~  237 (423)
                      |+...+.|..|.++...-+++++++.-...+-+|.     ...++. +||      |.+.|.+++  +|+.      .+.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~-----d~~ei~-~yg------VmstPalvI--dg~v------v~~   63 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK-----EMDQIL-EAG------LTALPGLAV--DGEL------KIM   63 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-----SHHHHH-HHT------CSSSSCEEE--TTEE------EEC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEeC-----CHHHHH-HcC------CcCCCEEEE--CCEE------EEE
Confidence            56679999999999999999999875445666663     234465 588      999999875  5544      677


Q ss_pred             CC-CCHHHHHHHH
Q 014549          238 GE-LSVDAVTDWF  249 (423)
Q Consensus       238 G~-~~~~~l~~fi  249 (423)
                      |. .+.++|.+|+
T Consensus        64 G~vPs~~ei~~~L   76 (77)
T d1iloa_          64 GRVASKEEIKKIL   76 (77)
T ss_dssp             SSCCCHHHHHHHC
T ss_pred             ecCCCHHHHHHHh
Confidence            85 4999999885

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.44  E-value=0.0057  Score=45.94  Aligned_cols=75  Identities=9%  Similarity=0.009  Sum_probs=50.2

Q ss_pred             eEEEEEecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549          280 VKVIFFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL  356 (423)
Q Consensus       280 ~~vl~f~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l  356 (423)
                      .+++|+++.+ .|  ..|.+..+|..+ ..+.+..+...  +.++++++|+|.++||+++   ++ +. +|.|.++.+.|
T Consensus        18 ~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~--~~~~l~~~~~I~~vPt~~~---ng-~~-~~~G~~~~~~l   89 (96)
T d1hyua4          18 EFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGG--TFQNEITERNVMGVPAVFV---NG-KE-FGQGRMTLTEI   89 (96)
T ss_dssp             EEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETT--TCHHHHHHTTCCSSSEEEE---TT-EE-EEESCCCHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEecc--cchHHHhhcccccccEEEE---CC-EE-EEecCCCHHHH
Confidence            3455666432 22  346677777664 45666666432  2378999999999999865   22 23 47899999999


Q ss_pred             HHHHHh
Q 014549          357 SEVMEQ  362 (423)
Q Consensus       357 ~~fi~~  362 (423)
                      .++|.+
T Consensus        90 ~~~les   95 (96)
T d1hyua4          90 VAKVDT   95 (96)
T ss_dssp             HHHHCC
T ss_pred             HHHHhC
Confidence            988753

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00084  Score=55.58  Aligned_cols=57  Identities=7%  Similarity=0.063  Sum_probs=43.8

Q ss_pred             CCCCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          151 HDSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       151 ~~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ..+.++++.|| +.||+.|..-.+.+.+...+++..+.+..|+-+........+++++
T Consensus        31 ~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~   88 (156)
T d2a4va1          31 ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQN   88 (156)
T ss_dssp             HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHT
T ss_pred             CCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccC
Confidence            34556666677 7899999999999999999998766666777765545566777776

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.41  E-value=0.0021  Score=50.54  Aligned_cols=89  Identities=16%  Similarity=0.195  Sum_probs=63.5

Q ss_pred             CCcEEEEEec--CCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549          153 SKPWLIQVYS--DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS  230 (423)
Q Consensus       153 ~~~~lV~FYa--pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~  230 (423)
                      .+++-+.+|.  +.|..|..+....+++|.. ...+.+-..+-+.. ...+++++++      |...|++.++.+|... 
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~-e~~~~~~~~~------ver~Ps~~i~~~g~~~-   91 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTP-EGKELAKRYR------IDRAPATTITQDGKDF-   91 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSH-HHHHHHHHTT------CCSSSEEEEEETTBCC-
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcc-hhhhHHHhhc------cccCceEEEecCCccc-
Confidence            4455444454  4699999999888888654 45566666665522 3456899999      9999999999887653 


Q ss_pred             CCcccccCCCCHHHHHHHHHHh
Q 014549          231 DCMTRFEGELSVDAVTDWFATA  252 (423)
Q Consensus       231 ~~~~~y~G~~~~~~l~~fi~~~  252 (423)
                        .+.|.|-..=..+..|+...
T Consensus        92 --gIrF~GiP~GhEf~SlilaI  111 (119)
T d1a8la1          92 --GVRYFGLPAGHEFAAFLEDI  111 (119)
T ss_dssp             --SEEEESCCCTTHHHHHHHHH
T ss_pred             --ceEEEeccCchhHHHHHHHH
Confidence              57899877766677776543

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.003  Score=55.18  Aligned_cols=99  Identities=9%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             cccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549          262 YTKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL  337 (423)
Q Consensus       262 it~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf  337 (423)
                      |++.+.+...+.......++|+ |+.+.+   ....+.+..+|..|. .+.|..+....+   .+..+|++...|||++|
T Consensus       104 i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-~vkF~ki~~~~~---~~~~~~~i~~lPtl~~y  179 (217)
T d2trcp_         104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRASNT---GAGDRFSSDVLPTLLVY  179 (217)
T ss_dssp             CCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHHHH---TCSTTSCGGGCSEEEEE
T ss_pred             cCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-cceEEEEccccc---hhHHhCCCCCCCeEEEE
Confidence            5543334444444334456665 555422   224577788998874 588988865433   25689999999999999


Q ss_pred             cCCCcceeEec-------CCCChhHHHHHHHhhcc
Q 014549          338 KDPGVKPVVYY-------GSFNNSRLSEVMEQNKL  365 (423)
Q Consensus       338 k~~~~~~~~y~-------g~~~~~~l~~fi~~~~~  365 (423)
                      +++.... .+.       ..++.++|..||.++..
T Consensus       180 k~G~~v~-~~vg~~~~~g~~~~~~~lE~~L~~~g~  213 (217)
T d2trcp_         180 KGGELIS-NFISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             ETTEEEE-EETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             ECCEEEE-EEECccccccccCCHHHHHHHHHHcCC
Confidence            9865332 121       23567889999988643

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.011  Score=45.65  Aligned_cols=43  Identities=16%  Similarity=0.291  Sum_probs=34.3

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcce--eEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~--~~y~g~~~~~~l~~fi~~  362 (423)
                      ..++++|+|.++||+++|.+++..-  ..+.|.++.+.|.++|++
T Consensus        72 ~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          72 VALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHhhhehhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            6789999999999999996544322  234788999999999976

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.03  E-value=0.021  Score=45.32  Aligned_cols=108  Identities=10%  Similarity=0.101  Sum_probs=69.6

Q ss_pred             CCceeecccchhhhhhhhhcCCCceEEEEEecCCCC---CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC--
Q 014549          256 LPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER---ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--  330 (423)
Q Consensus       256 ~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~---~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~--  330 (423)
                      +|-...++.++ ...+.+.   .++++++|.+..+.   ....++.+|.+|++.+.|+.+...+  .....+.||+..  
T Consensus         5 lPLv~e~~~~n-~~~~~~~---~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~--~~~~l~~~gl~~~~   78 (133)
T d2djka1           5 SPLIGEIGPET-YSDYMSA---GIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDK   78 (133)
T ss_dssp             CCCSEECCHHH-HHHHHHT---TSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSS
T ss_pred             CCceeccChhh-HHHHhcC---CCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHHH--hHHHHHHhcCCccc
Confidence            45444455444 3444432   23677766543221   1344577999999999998885332  256788899964  


Q ss_pred             CCeEEEecCCCcceeEe--cCCCChhHHHHHHHhhccccCc
Q 014549          331 APAIVFLKDPGVKPVVY--YGSFNNSRLSEVMEQNKLQELP  369 (423)
Q Consensus       331 ~Ptl~lfk~~~~~~~~y--~g~~~~~~l~~fi~~~~~~~lp  369 (423)
                      .|.++++.........|  .+.++.+.|.+|+++..-..+.
T Consensus        79 ~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~  119 (133)
T d2djka1          79 FPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIE  119 (133)
T ss_dssp             SSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCC
T ss_pred             CCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCC
Confidence            89999886544444344  4567899999999997666554

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.02  E-value=0.0069  Score=43.02  Aligned_cols=54  Identities=9%  Similarity=-0.056  Sum_probs=40.1

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++.|..|||++|.+.....++.      .+.+-.+|.++++....+.+..|      .+++|++.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g------~~tvP~i~i   56 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALG------YVQAPVVEV   56 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CBCCCEEEE
T ss_pred             EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhC------CCCcCEEEE
Confidence            4567789999998877555432      25777888887766667777778      889998754

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.015  Score=48.15  Aligned_cols=42  Identities=17%  Similarity=0.210  Sum_probs=35.9

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      ++.+++.|| +.||+.|..-.+.+.+..++++.. +.+..|..+
T Consensus        44 GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d   87 (169)
T d2bmxa1          44 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSID   87 (169)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             CCeEEEEEecCCCCccccccccccccccccccccCcceeecccc
Confidence            567788888 899999999999999999999875 577777776

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.65  E-value=0.01  Score=49.12  Aligned_cols=53  Identities=11%  Similarity=0.045  Sum_probs=41.2

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHh
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE  204 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~  204 (423)
                      .++++++.|| +.||+.|..-.+.+.+..++++.. +.+..|+.+........+.
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~   86 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTS   86 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHh
Confidence            3568999999 999999999999999999999875 5778888774333333333

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0082  Score=49.98  Aligned_cols=30  Identities=13%  Similarity=0.018  Sum_probs=24.5

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHH
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL  181 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~  181 (423)
                      +.+..++.|+.+.|+||+++.+..+++.+.
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~   64 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDS   64 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhc
Confidence            345678999999999999999988776543

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0094  Score=42.57  Aligned_cols=54  Identities=15%  Similarity=0.157  Sum_probs=39.2

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++-|..|||++|.+....+++.      .+.+-.+|.++++...+..+..|      .+++|+|.+
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g------~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQG------FRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTT------CCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcC------CCCCCEEEE
Confidence            4567789999998877655432      25777888887665555556667      889999876

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.035  Score=43.59  Aligned_cols=73  Identities=5%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             hHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC-CCeEEEecCCCcceeEe-------------cCCCChhHHHHH
Q 014549          294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES-APAIVFLKDPGVKPVVY-------------YGSFNNSRLSEV  359 (423)
Q Consensus       294 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~-~Ptl~lfk~~~~~~~~y-------------~g~~~~~~l~~f  359 (423)
                      ..++.+|.+|++.+.|+.+...+  .....+.||+.. .|.+++....+.....+             .++++.+.|.+|
T Consensus        36 ~~~~~vAk~fkgki~Fv~~D~~~--~~~~l~~fgl~e~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F  113 (125)
T d2b5ea3          36 PLFTELAKKNRGLMNFVSIDARK--FGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESL  113 (125)
T ss_dssp             HHHHHHHHHTTTTCEEEEEEHHH--HTTHHHHTTCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCeeEEEEEchHH--hHHHHHHcCCCccCCcEEEEecccCcccccchhhhhhcccccccccCCHHHHHHH
Confidence            44566899999999999987432  256789999975 89998876443322222             356889999999


Q ss_pred             HHhhccccC
Q 014549          360 MEQNKLQEL  368 (423)
Q Consensus       360 i~~~~~~~l  368 (423)
                      +++.....+
T Consensus       114 ~~d~l~GKl  122 (125)
T d2b5ea3         114 VKDFLKGDA  122 (125)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHcCCc
Confidence            998655443

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=94.97  E-value=0.019  Score=47.53  Aligned_cols=54  Identities=15%  Similarity=0.067  Sum_probs=41.9

Q ss_pred             CCcEEEEEecC-CCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC
Q 014549          153 SKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK  206 (423)
Q Consensus       153 ~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~  206 (423)
                      ++.+++.||+. ||+.|..-.+.+.++.+++... +.+..|.++....+...++++
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~   86 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENS   86 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhh
Confidence            56788899965 9999999999999999999765 578888888443334455554

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.72  E-value=0.046  Score=47.95  Aligned_cols=100  Identities=8%  Similarity=-0.028  Sum_probs=64.3

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch------------------------hhhHHHhh
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR------------------------LATHLAER  205 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~------------------------~~~~l~~~  205 (423)
                      .++.+++.|| ++||+.|..-.+.+.+...+++.. +.+..|.++...                        ....+++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            5667778888 899999999889999998888765 577777765211                        23456777


Q ss_pred             CCCC-ccccccCccEEEEeCCCCCCCCCccccc--CCCCHHHHHHHHHHh
Q 014549          206 KPIG-QIFFRRGLPSLVAFPPGCKSSDCMTRFE--GELSVDAVTDWFATA  252 (423)
Q Consensus       206 ~~~~-~~~~i~~~Pti~~f~~g~~~~~~~~~y~--G~~~~~~l~~fi~~~  252 (423)
                      ||+- ........|++.++-+.+.. .....|.  -.|+.++|++.+...
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~I-r~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVI-RTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBE-EEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHHH
Confidence            7731 00011456888887555431 0011222  356899999988544

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=94.14  E-value=0.043  Score=45.43  Aligned_cols=55  Identities=9%  Similarity=0.047  Sum_probs=41.3

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK  206 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~  206 (423)
                      .++++++.|| +.||+.|..-.+.+.+...++++. +.+..|.++........++++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~   88 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTP   88 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSC
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhh
Confidence            3557888899 899999999999999999998766 578888887443333344443

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=94.10  E-value=0.058  Score=44.64  Aligned_cols=43  Identities=14%  Similarity=0.066  Sum_probs=36.9

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      .++++++.|| +.||+.|..-...+.+..++++.. +.+..|.++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D   70 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD   70 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCC
Confidence            3567889999 799999999999999999998875 578888877

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.02  Score=47.22  Aligned_cols=41  Identities=10%  Similarity=0.211  Sum_probs=32.5

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~  194 (423)
                      ++++++.|| +.||+.|..-.|.+++.+.++.+ +.+..|..+
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d   85 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN-TVVLCISAD   85 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT-EEEEEEESS
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhcc-ceeeeEEcC
Confidence            567788787 67999999999999998887754 566667666

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.038  Score=40.12  Aligned_cols=79  Identities=9%  Similarity=0.154  Sum_probs=52.0

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR  235 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~  235 (423)
                      +|.|..+||++|++....+++......+ +.+-.+|.++++. ...+.+..+.+    ++.+|+|.+  +|        .
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~----~~tvPqIfi--~g--------~   67 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKP----VETVPQIFV--DQ--------Q   67 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCC----SCCSCEEEE--TT--------E
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCC----CCCCCEEEE--CC--------E
Confidence            4678889999999999888888776664 5667777664332 23344444322    678999754  55        3


Q ss_pred             ccCCCCHHHHHHHHHHh
Q 014549          236 FEGELSVDAVTDWFATA  252 (423)
Q Consensus       236 y~G~~~~~~l~~fi~~~  252 (423)
                      +-|..  +++.+++.+.
T Consensus        68 ~IGG~--~el~~~~~~~   82 (85)
T d1egoa_          68 HIGGY--TDFAAWVKEN   82 (85)
T ss_dssp             EEESS--HHHHHHHHHH
T ss_pred             EEECH--HHHHHHHHhc
Confidence            44554  5677777654

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=93.95  E-value=0.036  Score=39.06  Aligned_cols=54  Identities=11%  Similarity=0.100  Sum_probs=38.0

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      ++.|..|+|++|++.....++.      .+.+-.+|.+++.....+-+..+      ...+|.|.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~------~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSG------RTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTC------CSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhC------CccCCEEEE
Confidence            4677889999999877554432      25677778776655555666667      779998754

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.033  Score=46.90  Aligned_cols=43  Identities=9%  Similarity=-0.188  Sum_probs=37.2

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~  194 (423)
                      .++++||-++|+|||.|.+-.|..+++.+++++. +.|..+-|+
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n   66 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   66 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence            5789999999999999998788999999988765 577777777

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.19  Score=40.34  Aligned_cols=58  Identities=14%  Similarity=0.196  Sum_probs=37.6

Q ss_pred             cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH----HHHHHhh
Q 014549          306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL----SEVMEQN  363 (423)
Q Consensus       306 ~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l----~~fi~~~  363 (423)
                      .+-+..+...+.+...++++|++.++|+++++.+.+.+.+...|.++.+.+    .+|+..|
T Consensus        77 ~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl~~~  138 (147)
T d2dlxa1          77 HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEH  138 (147)
T ss_dssp             TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHT
T ss_pred             heeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEecccCCCCHHHHHHHHHHHHhhC
Confidence            344555555444457899999999999999997544444443455666554    5555554

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=93.61  E-value=0.041  Score=45.23  Aligned_cols=54  Identities=13%  Similarity=0.091  Sum_probs=39.2

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ++++++.|| +.||+.|..-.+.+++...++++ +.+..|.++........+++++
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~   96 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEG   96 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTT
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhC
Confidence            567888888 55788899999999999888875 5777888774333344445554

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.56  E-value=0.015  Score=47.09  Aligned_cols=55  Identities=11%  Similarity=-0.012  Sum_probs=40.1

Q ss_pred             CCcEEE-EEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLI-QVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV-~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++ .|.+.||+.|..-.+.+.+..+++.+. +.+..|+++........+++++
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~   85 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSG   85 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHT
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhc
Confidence            344444 445899999998888888888877765 6888888885555566677766

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.30  E-value=0.072  Score=43.39  Aligned_cols=53  Identities=13%  Similarity=0.113  Sum_probs=40.9

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhh
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER  205 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~  205 (423)
                      ++++++.|| +.||+.|..-.+.+.+...++... ..+..|..+........++.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~   80 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINT   80 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhh
Confidence            568999999 889999999999999999988765 57777887744333444444

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.14  E-value=0.51  Score=36.29  Aligned_cols=61  Identities=18%  Similarity=0.253  Sum_probs=43.6

Q ss_pred             hccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          302 NYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       302 ~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      +..+++.+........+..+++++|+++..|+++++.++....+.|.|--.-.++..||..
T Consensus        50 ~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~GhEf~Slila  110 (119)
T d1a8la1          50 ELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLED  110 (119)
T ss_dssp             TTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCCTTHHHHHHHH
T ss_pred             hhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccCchhHHHHHHH
Confidence            3345566555544433446899999999999999998766667889886665667777654

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.31  Score=38.56  Aligned_cols=33  Identities=9%  Similarity=-0.033  Sum_probs=28.2

Q ss_pred             CCCcEEEEEecCCCc-cccccHHHHHHHHHHhhc
Q 014549          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEG  184 (423)
Q Consensus       152 ~~~~~lV~FYapwC~-~C~~~~p~~~~~A~~l~~  184 (423)
                      .++++||.|+.+||+ .|....+.+.++.+.++.
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~   52 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDS   52 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhc
Confidence            478999999999996 599889999988887754

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=92.33  E-value=0.2  Score=35.26  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=47.3

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF  236 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y  236 (423)
                      +..|..|+|..|.......   .+.  ..+.+-.||.+++   .++.++|+      . .+|.|.  .+|..      ..
T Consensus         2 ltLyt~~~C~LCe~A~~~l---~~~--~~~~~~~vdI~~d---~~l~~~y~------~-~IPVl~--~~~~~------~l   58 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEAL---AQA--RAGAFFSVFIDDD---AALESAYG------L-RVPVLR--DPMGR------EL   58 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHH---HHT--TCCCEEEEECTTC---HHHHHHHT------T-TCSEEE--CTTCC------EE
T ss_pred             EEEECCCCccHHHHHHHHH---Hhc--cCCcEEEEEccCC---HHHHHHhC------C-eeeEEE--ECCee------EE
Confidence            5667889999997654322   111  1368899999954   45888997      3 379765  23332      22


Q ss_pred             cCCCCHHHHHHHHHH
Q 014549          237 EGELSVDAVTDWFAT  251 (423)
Q Consensus       237 ~G~~~~~~l~~fi~~  251 (423)
                      .-+.+.+.|.+|+..
T Consensus        59 ~w~fd~~~l~~~L~~   73 (75)
T d1ttza_          59 DWPFDAPRLRAWLDA   73 (75)
T ss_dssp             ESCCCHHHHHHHHHT
T ss_pred             cCccCHHHHHHHHhc
Confidence            345689999999853

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=91.88  E-value=0.052  Score=44.52  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=34.1

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL  193 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc  193 (423)
                      +.++.+|+|.+..|+||+++.+...++.+.+.+.+.+.....
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            567889999999999999999999988887766666555544

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=91.61  E-value=0.087  Score=37.70  Aligned_cols=54  Identities=7%  Similarity=0.081  Sum_probs=35.3

Q ss_pred             EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEEE
Q 014549          157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVA  222 (423)
Q Consensus       157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~~  222 (423)
                      +..|..|||++|.+....+++.      .+.+..+|.+++... ..+-+..|      .+.+|.|.+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g------~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSG------RTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHS------SCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhC------CCCCCeEEE
Confidence            3456789999998877555432      257778888755433 23445556      779998753

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.59  E-value=0.14  Score=41.98  Aligned_cols=43  Identities=9%  Similarity=0.200  Sum_probs=35.4

Q ss_pred             CCCcEEEEEecCCCc-cccccHHHHHHHHHHhhc---cceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSY-LCGQFSGAWKTIAALLEG---IANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~-~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~  194 (423)
                      .+++++|.|+..||+ .|....+.+.++.+.++.   .+.+..|..+
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            467999999999996 699999999999888853   2567777765

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.54  E-value=0.099  Score=44.19  Aligned_cols=44  Identities=11%  Similarity=0.138  Sum_probs=37.7

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccc
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI  196 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~  196 (423)
                      ++.+++.|| ++||+.|..-.+.+.++.++++.. +.|..|+++..
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~   78 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSE   78 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCch
Confidence            568889999 899999999999999999999875 68888887743

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.09  E-value=0.14  Score=42.87  Aligned_cols=55  Identities=9%  Similarity=-0.015  Sum_probs=42.9

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      ++.+++.|| ++||+.|..-.+.+.+..++++.. +.+..|.++....+...|++++
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~   86 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSE   86 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCT
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhcccc
Confidence            467888999 788999999999999999998765 5788888875444455666653

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.26  E-value=0.091  Score=42.92  Aligned_cols=55  Identities=15%  Similarity=0.076  Sum_probs=35.8

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP  207 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~  207 (423)
                      .+++++|.|| +.||+.|..-.+.+.+...++++ +.+..|..+.........++.+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d~~~~~~~~~~~~~   96 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN-TVVLTVSMDLPFAQKRWCGAEG   96 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT-EEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcc-cceEEEEeccHHHHHHHHHHcC
Confidence            3567788888 77999999988888777666654 4566666553322333444443

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=0.84  Score=32.90  Aligned_cols=86  Identities=12%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             hhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC-cceeE
Q 014549          268 GKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVV  346 (423)
Q Consensus       268 ~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~-~~~~~  346 (423)
                      ++.++....--.|+|+..+-..+.....+..+|..+++.+.|......             ..-|.|-++=++. .+|++
T Consensus         8 l~~~l~n~t~v~pVVV~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs~~~~-------------~~~~kLsV~LP~e~dEPIv   74 (98)
T d2b5ea2           8 LPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENA-------------DDDFKLSIYLPSAMDEPVV   74 (98)
T ss_dssp             HHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEEEECT-------------TSCCEEEEEETTEEEEEEE
T ss_pred             hHHHHhcCcccCCEEEeCCccccchhHHHHHHHHHhhcceEEEeccCC-------------CCCccEEEECCCCCCCCeE
Confidence            455554422124777777632234677888899998888777665421             2246666665554 49999


Q ss_pred             ecCCC----ChhHHHHHHHhhccc
Q 014549          347 YYGSF----NNSRLSEVMEQNKLQ  366 (423)
Q Consensus       347 y~g~~----~~~~l~~fi~~~~~~  366 (423)
                      |+|+.    +.+.+.+||+...+|
T Consensus        75 f~G~~~~i~~a~~l~~WlkVe~lP   98 (98)
T d2b5ea2          75 YNGKKADIADADVFEKWLQVEALP   98 (98)
T ss_dssp             CCSCHHHHTSHHHHHHHHHHHSSC
T ss_pred             EcCccCCcccHHHHHHHHeeeccC
Confidence            99964    456699999886554

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=86.37  E-value=0.11  Score=43.00  Aligned_cols=43  Identities=12%  Similarity=0.084  Sum_probs=29.3

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHHHHHHh---hccceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL---EGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l---~~~~~~~~Vdc~  194 (423)
                      ...+.+|+|++-.|+||+++.|....+.+..   .+.+.+......
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            3557799999999999999998765444432   233455555543

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.90  E-value=1.4  Score=34.37  Aligned_cols=32  Identities=13%  Similarity=-0.145  Sum_probs=21.8

Q ss_pred             CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhh
Q 014549          152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLE  183 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~  183 (423)
                      .++++||.|+..||.. |.........+...+.
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~   57 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLS   57 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhhcc
Confidence            4689999999999965 5555555555544443

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.41  Score=40.28  Aligned_cols=51  Identities=14%  Similarity=0.059  Sum_probs=40.5

Q ss_pred             CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHH
Q 014549          153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLA  203 (423)
Q Consensus       153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~  203 (423)
                      ++.+++.|| ++||+.|..-...+.+..++++.. +.+..|.++....+...+
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~   86 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWI   86 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhh
Confidence            567888899 899999999999999999999875 688899988443333333

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=85.04  E-value=0.15  Score=42.97  Aligned_cols=43  Identities=14%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             CCCcEEEEEecCCCccccccHHHHHH---HHHHhhccceEEEEEcc
Q 014549          152 DSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FYapwC~~C~~~~p~~~~---~A~~l~~~~~~~~Vdc~  194 (423)
                      .+.+-+|+|++-+|+||.++.|..+.   +.+.+.+.+.|..+...
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            35678999999999999999997654   44445555667666654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=84.58  E-value=3.1  Score=32.02  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=32.9

Q ss_pred             HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ..+.+.|++...|+++++.+.+.....+.|..+.+.|.+-|++
T Consensus       100 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         100 HALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             cchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            4588899999999999996555544456788888888877764

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.66  E-value=0.41  Score=38.83  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=29.1

Q ss_pred             CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549          152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIANTGMVELG  194 (423)
Q Consensus       152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~  194 (423)
                      .++++++.|| +.||+.|..-.+.+.+..+.+.  +.+..|..+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d   83 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKD   83 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccc
Confidence            4567888888 5578889988888777665543  466666655

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.99  E-value=2.5  Score=30.78  Aligned_cols=51  Identities=16%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549          306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ  362 (423)
Q Consensus       306 ~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~  362 (423)
                      ...+..+.+...+.+++.++|++. .|+|++  ++.  . ...|.++.+.|.++|++
T Consensus        43 ~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~--~-~~~g~~d~~~L~~~L~~   93 (100)
T d1wjka_          43 RFILQEVDITLPENSTWYERYKFD-IPVFHL--NGQ--F-LMMHRVNTSKLEKQLRK   93 (100)
T ss_dssp             SSEEEEEETTSSTTHHHHHHSSSS-CSEEEE--SSS--E-EEESSCCHHHHHHHHHS
T ss_pred             hcceEEEecccccCHHHHHHhccc-CCceee--cCc--e-EEeCCCCHHHHHHHHHH
Confidence            344555554444558899999997 897765  222  2 24688899999999976

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.41  E-value=0.085  Score=39.86  Aligned_cols=67  Identities=9%  Similarity=0.060  Sum_probs=37.4

Q ss_pred             ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhH-HHhhCCCCccccccCccEEEEeCCC
Q 014549          149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATH-LAERKPIGQIFFRRGLPSLVAFPPG  226 (423)
Q Consensus       149 ~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~-l~~~~~~~~~~~i~~~Pti~~f~~g  226 (423)
                      .+++++  +|.|..+||++|.+....+.+..-.. ..+.+-.+|-..+. .... +.+..+      .+.+|+|.  .+|
T Consensus         8 ~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~~d~~~~~~~l~~~~g------~~tvPqIf--i~g   76 (105)
T d1ktea_           8 KIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKE-GLLEFVDITATSDTNEIQDYLQQLTG------ARTVPRVF--IGK   76 (105)
T ss_dssp             HCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGSTTHHHHHHHHHHHHS------CCCSCEEE--ETT
T ss_pred             HhccCC--EEEEECCCCchHHHHHHHHHHhCCcc-ceeeeeecccccccHHHHHHHhhccC------CCcCcEEE--ECC
Confidence            445555  57889999999998887665432111 11344455544322 2222 233335      66899874  455