Citrus Sinensis ID: 014575

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
Protein Sequence
MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLLYAPDSTEPTEDPRSTLD
Secondary Structure (PSIPRED)
cccccccEEcHHHHcccccccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccEEEccccccccccccccccccccEEEcccccccEEccccccccccccccEEccccccccccccccccccccccEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccHHccccccccEEcccccccEEEEccccccccEEccccccccEEEEcccccccccccccEEEEEEEEEcccccccccccEEEEEEEEEccccccccccccEEEccccccccccEEEEEEEEccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccHHHHHHccccEEEEEEccccccccccccccccccccHHHcEEEccccccccccccccHHHHEEEcccccHHHHccccccccHcccEEEcccccHHcccccccccccHHHHHEEccccccccccccccHHHHHHHcEEEcccccHHcccccccccHcHHEEEcccccEEEccccHHHHccccEEEccccccHccccccHHHHHcccEEEccccccccccccccccHHHHHEEccccccHccccccccccEEEcccccccHHEccccccccEEEEccccccccccccccEEEEEEEEEcccccccccccEEEEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEEEEEccccccccccEEEEEcEEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
msrikeiylhpdtftkMCKLRFLKFynskddgenkckvsylvgpgfaEVRYLHWygyplkslpsnihpeklvsiemphgniqQLWDDVEHNGKLKQIISRACNfftkspnhsltLHLDKLVNlnlnnckslrilpaGIFRLEFLKELdlwgcsklktlpeissagnIEVMYLNgtaieelpSSIECLSRLSALYLDnckrlkslpsslcklnslnfIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQssgrlllpgneipmwfsfqslgsssitlkmphagwfsnnkvIGFAYSAVVGFRDHHVKEKRRFHLFCEFmkakpedcteplvgrcflwhfnYVEADHLLLGYyffgdhdfsafrkhncdhVAVKFYLEDVnnqherldccpvkkcgihllyapdsteptedprstld
Flexible Loop (DISEMBL)
msrikeiylhpdtftkmckLRFLKFynskddgenkcKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLktlpeissagNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLlyapdsteptedprstld
Low Complexity Region (SEG)
MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLLYAPDSTEPTEDPRSTLD
Disordered region (IsUnstruct)
****KEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLLYA***************
Disordered Region (DISOPRED)
*SRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVS*LVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLL*****************
Disordered Region (DISEMBL)
MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLLYAPD*************
Disordered Region (DISPRO)
*SRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLLYAPD*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCPVKKCGIHLLYAPDSTEPTEDPRSTLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	422	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.561	0.125	0.362	1e-30
O82500	1095	Putative disease resistan	no	no	0.701	0.270	0.296	2e-24
Q40392	1144	TMV resistance protein N	N/A	no	0.450	0.166	0.325	9e-21
Q9FH83	1288	Probable WRKY transcripti	no	no	0.533	0.174	0.335	2e-20
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.433	0.140	0.344	1e-17
Q9FL92	1372	Probable WRKY transcripti	no	no	0.537	0.165	0.313	4e-17
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.511	0.133	0.273	2e-15
Q9FKZ1	809	Probable disease resistan	no	no	0.492	0.257	0.310	2e-11
P0CB16	1201	Putative disease resistan	no	no	0.388	0.136	0.315	9e-10
Q9FKZ0	815	Probable disease resistan	no	no	0.485	0.251	0.301	3e-09

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 141/273 (51%), Gaps = 36/273 (13%)

Query: 10   HPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF--AEVRYLHWYGYPLKSLPSNIH 67
            +P+ F KMC LR LK Y SK   E K  VS+  G  +  +++R LHW  YPL SLP + +
Sbjct: 1168 NPNVFEKMCNLRLLKLYCSK--AEEKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFN 1225

Query: 68   PEKLVSIEMPHGNIQQLWDDVEHN--------GKLKQIISRACNFFTKSPNHSLTLHLD- 118
            PE LV + +P    ++LW   +           KLK++     +  TK P  S   +L+ 
Sbjct: 1226 PENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEH 1285

Query: 119  --------------------KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTL 158
                                KLV LNL  C  L  +P+ +  LE L+ L+L GCSKL   
Sbjct: 1286 IDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPS-MVDLESLEVLNLSGCSKLGNF 1344

Query: 159  PEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
            PEIS   N++ +Y+ GT I+E+PSSI+ L  L  L L+N + LK+LP+S+ KL  L  + 
Sbjct: 1345 PEISP--NVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLN 1402

Query: 219  LRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
            L  C SL+  PD    ++ L  L    T I+E+
Sbjct: 1403 LSGCISLERFPDSSRRMKCLRFLDLSRTDIKEL 1435

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 169/384 (44%), Gaps = 88/384 (22%)

Query: 1   MSRIKE-IYLHPDTFTKMCKLRFLKFY-NSKDDGENKCKVSYLVGPGFA---EVRYLHWY 55
           M  IKE +Y+   TF +M  L +LKFY +S  D + K K+  L   G +   ++R LHW 
Sbjct: 536 MCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQ-LPEEGLSYLPQLRLLHWD 594

Query: 56  GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVE-----------------------HNG 92
            YPL+  PS+  PE LV + M H  +++LW  V+                          
Sbjct: 595 AYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEAT 654

Query: 93  KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGC 152
           KL ++    C    + P  S   +L  L+ L ++ CK L I+P  I  L  L+ L    C
Sbjct: 655 KLNRLDLGWCESLVELP--SSIKNLQHLILLEMSCCKKLEIIPTNI-NLPSLEVLHFRYC 711

Query: 153 SKLKTLPEISSAGNIEVMYLNGTAIEELPSSIE--------CLSR------------LSA 192
           ++L+T PEIS+  NI ++ L GTAI E+P S++        C+ R            L  
Sbjct: 712 TRLQTFPEIST--NIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVKRLVHVPYVLEK 769

Query: 193 LYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI---- 248
           L L   K L+++P  L  L  L  I + +C ++ SLP   G++ AL ++  E   I    
Sbjct: 770 LCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESLQILHGH 829

Query: 249 -------------------------REVYFFQSSGRL-LLPGNEIPMWFSFQSLGSSSIT 282
                                    R VY  QSS    +LPG  +P +FS++S GSS   
Sbjct: 830 FRNKSIHLNFINCLKLGQRAQEKIHRSVYIHQSSYIADVLPGEHVPAYFSYRSTGSSI-- 887

Query: 283 LKMPHAGWFSNNKVIGFAYSAVVG 306
             M H+     +K   F    V+G
Sbjct: 888 --MIHSNKVDLSKFNRFKVCLVLG 909

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 25/215 (11%)

Query: 57  YPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLH 116
           YP +S PS    + LV +++ H +++ LW + +H   L++I        T++P+ +   +
Sbjct: 584 YPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPN 643

Query: 117 LD---------------------KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL 155
           L+                     K++ L LN+CKSL+  P     +E L+ L L  C  L
Sbjct: 644 LEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPC--VNVESLEYLGLRSCDSL 701

Query: 156 KTLPEISSAGNIEV-MYLNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSLCKLNS 213
           + LPEI      E+ +++ G+ I ELPSSI +  + ++ L L N K L +LPSS+C+L S
Sbjct: 702 EKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKS 761

Query: 214 LNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248
           L  + +  CS L+SLP+E+G+L+ L    A  T I
Sbjct: 762 LVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLI 796

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 131/286 (45%), Gaps = 61/286 (21%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFA---EVRYLHWYGYPLKSLPSN 65
           L P  F  M  LR LK Y S  + E    +++  G   +   E+R LHW  YPLKSLP N
Sbjct: 515 LQPSAFKNMLNLRLLKIYCS--NPEVHPVINFPTGSLHSLPNELRLLHWENYPLKSLPQN 572

Query: 66  IHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLT-----LHLDKL 120
             P  LV I MP+  +Q+LW   ++   L+ I  R C+      +H L      L  + L
Sbjct: 573 FDPRHLVEINMPYSQLQKLWGGTKNLEMLRTI--RLCH------SHHLVDIDDLLKAENL 624

Query: 121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEEL 180
             ++L  C  L+  PA   RL  L+ ++L GC K+K++ EI    NIE ++L GT I  L
Sbjct: 625 EVIDLQGCTRLQNFPAA-GRLLRLRVVNLSGCIKIKSVLEIPP--NIEKLHLQGTGILAL 681

Query: 181 P-----------------------------------SSIECLSRLSALYLDNCKRLKSLP 205
           P                                   SS + L +L  L L +C  L+SLP
Sbjct: 682 PVSTVKPNHRELVNFLTEIPGLSEELERLTSLLESNSSCQDLGKLICLELKDCSCLQSLP 741

Query: 206 SSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
            ++  L+ LN + L  CSSL S+    G    L  L   GTAIREV
Sbjct: 742 -NMANLD-LNVLDLSGCSSLNSIQ---GFPRFLKQLYLGGTAIREV 782

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 108/215 (50%), Gaps = 32/215 (14%)

Query: 60  KSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDK 119
           + +P    PE+L  + +     ++LW+ ++  G L+ +        T+ P+ S    L+ 
Sbjct: 741 RCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPDLSKATKLES 800

Query: 120 LVNLNLNNCKSLRILPAGI------FRLEF-----------------LKELDLWGCSKLK 156
           L+   LNNCKSL  LP+ I       RLE                  L+ LDL GCS L+
Sbjct: 801 LI---LNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDVNLSSLETLDLSGCSSLR 857

Query: 157 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF 216
           + P IS+  NI  +YL  TAIEE+PS+I  L RL  L +  C  L+ LP+ +  L+SL  
Sbjct: 858 SFPLIST--NIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSSLET 914

Query: 217 IYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
           + L  CSSL+S P      E++  L  E TAI E+
Sbjct: 915 LDLSGCSSLRSFP---LISESIKWLYLENTAIEEI 946

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 124/284 (43%), Gaps = 57/284 (20%)

Query: 13  TFTKMCKLRFLKFYNSKDDG---ENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPE 69
            F  M  LR  K Y+S  +     N  K S    P    +R LHW  YPL+ LP N  P 
Sbjct: 512 AFDNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNV--LRLLHWENYPLQFLPQNFDPI 569

Query: 70  KLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK 129
            LV I MP+  +++LW   +    LK I  R C+         L L    L  ++L  C 
Sbjct: 570 HLVEINMPYSQLKKLWGGTKDLEMLKTI--RLCHSQQLVDIDDL-LKAQNLEVVDLQGCT 626

Query: 130 SLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI----- 184
            L+  PA   +L  L+ ++L GC+++K+ PEI    NIE + L GT I ELP SI     
Sbjct: 627 RLQSFPA-TGQLLHLRVVNLSGCTEIKSFPEIPP--NIETLNLQGTGIIELPLSIVKPNY 683

Query: 185 -ECLS------------------------------------RLSALYLDNCKRLKSLPSS 207
            E L+                                    +LS L L++C RL+SLP +
Sbjct: 684 RELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQNPGKLSCLELNDCSRLRSLP-N 742

Query: 208 LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
           +  L  L  + L  CS L+++    G    L  L   GTA+R+V
Sbjct: 743 MVNLELLKALDLSGCSELETIQ---GFPRNLKELYLVGTAVRQV 783

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 123/296 (41%), Gaps = 80/296 (27%)

Query: 12  DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFA--------EVRYLHWYGYPLKSLP 63
           D F  M  L+FLK YNS       C   Y+ G  F         E+R LHW  YPL+SLP
Sbjct: 536 DAFKNMFNLKFLKIYNS-------CS-KYISGLNFPKGLDSLPYELRLLHWENYPLQSLP 587

Query: 64  SNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISR------ACNFFTKSPNHSLTLHL 117
            +     LV + MP+  + +L   V+    LK++I         C+    + N  L    
Sbjct: 588 QDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYAQNIEL---- 643

Query: 118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAI 177
                ++L  C  L+  P    +L+ L+ ++L GC+++K    +    NIE ++L GT I
Sbjct: 644 -----IDLQGCTGLQRFP-DTSQLQNLRVVNLSGCTEIKCFSGVPP--NIEELHLQGTRI 695

Query: 178 EELP-----------------------------SSIECLSRLSALYLDN----------- 197
            E+P                               +EC++ L+ +  +N           
Sbjct: 696 REIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMGKLVCLNM 755

Query: 198 --CKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
             C  L+ LP  +  L SL  +YL  CS L+ +   +G    L  L   GTAIRE+
Sbjct: 756 KYCSNLRGLP-DMVSLESLKVLYLSGCSELEKI---MGFPRNLKKLYVGGTAIREL 807

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 32  GENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN 91
           G  K KV  +   GF   R  ++    L SLP N+   +L  + +   +I QL       
Sbjct: 568 GMKKLKVLTITNHGFYPARLSNFSC--LSSLP-NLKRIRLEKVSITLLDIPQL-----QL 619

Query: 92  GKLKQIISRACNF---FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELD 148
             LK++    C+F   F  + +  ++  L KL  ++++ C  L  LP  I  +  LK L 
Sbjct: 620 SSLKKLSLVMCSFGEVFYDTEDIVVSNALSKLQEIDIDYCYDLDELPYWISEIVSLKTLS 679

Query: 149 LWGCSKLKTLPE-ISSAGNIEVMYL-NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS 206
           +  C+KL  LPE I +   +EV+ L +   + ELP + E LS L  L + +C  L+ LP 
Sbjct: 680 ITNCNKLSQLPEAIGNLSRLEVLRLCSSMNLSELPEATEGLSNLRFLDISHCLGLRKLPQ 739

Query: 207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248
            + KL +L  I +R CS  + LP+ + NLE L+    E T +
Sbjct: 740 EIGKLQNLKKISMRKCSGCE-LPESVTNLENLEVKCDEETGL 780

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 26/190 (13%)

Query: 74  IEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD--------KLVNLN- 124
           ++M   ++ +L D +     L +++ R C+   + P+     HL+        KL N+N 
Sbjct: 684 LDMSKTSLPELADTIADVVNLNKLLLRNCSLIEELPSIEKLTHLEVFDVSGCIKLKNING 743

Query: 125 ----------LNNCKS-LRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN 173
                     +N  ++ L  LP  I  L  LKEL +  CSKLKTLP +    N+E+  ++
Sbjct: 744 SFGEMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPNLEKLTNLEIFDVS 803

Query: 174 G-TAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDEL 232
           G T +E +  S E LS L  + L     L  LP+ + +L++L  + LR CS LK+LP   
Sbjct: 804 GCTELETIEGSFENLSCLHKVNLSET-NLGELPNKISELSNLKELILRNCSKLKALP--- 859

Query: 233 GNLEALDSLI 242
            NLE L  L+
Sbjct: 860 -NLEKLTHLV 868

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 35  KCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKL 94
           K KV  +   GF   R  ++    L SLP N+   +   + +   +I QL       G L
Sbjct: 577 KLKVLTIANHGFYPARLSNFSC--LSSLP-NLKRIRFEKVSVTLLDIPQL-----QLGSL 628

Query: 95  KQIISRACNF---FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWG 151
           K++    C+F   F  + +  ++  L  L  ++++ C  L  LP  I  +  LK L +  
Sbjct: 629 KKLSFFMCSFGEVFYDTEDIDVSKALSNLQEIDIDYCYDLDELPYWIPEVVSLKTLSITN 688

Query: 152 CSKLKTLPE-ISSAGNIEVMYL-NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLC 209
           C+KL  LPE I +   +EV+ + +   + ELP + E LS L +L + +C  L+ LP  + 
Sbjct: 689 CNKLSQLPEAIGNLSRLEVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIG 748

Query: 210 KLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248
           KL  L  I +R CS  + LPD +  LE L+    E T +
Sbjct: 749 KLQKLENISMRKCSGCE-LPDSVRYLENLEVKCDEVTGL 786

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
297800100	686	hypothetical protein ARALYDRAFT_354804 [	0.917	0.564	0.305	7e-43
225460354	1174	PREDICTED: TMV resistance protein N-like	0.573	0.206	0.410	3e-39
359496026	1250	PREDICTED: TMV resistance protein N-like	0.578	0.195	0.394	8e-39
255537139	1137	leucine-rich repeat-containing protein,	0.568	0.211	0.392	4e-38
9759605	1232	disease resistance protein RPS4 [Arabido	0.571	0.195	0.363	1e-37
15242334	1261	TIR-NBS-LRR class disease resistance pro	0.571	0.191	0.363	1e-37
296089535	688	unnamed protein product [Vitis vinifera]	0.592	0.363	0.381	5e-37
297744796	596	unnamed protein product [Vitis vinifera]	0.592	0.419	0.369	2e-36
359495221	1181	PREDICTED: TMV resistance protein N-like	0.592	0.211	0.384	3e-36
147822714	1254	hypothetical protein VITISV_015601 [Viti	0.592	0.199	0.384	3e-36

>gi|297800100|ref|XP_002867934.1| hypothetical protein ARALYDRAFT_354804 [Arabidopsis lyrata subsp. lyrata] gi|297313770|gb|EFH44193.1| hypothetical protein ARALYDRAFT_354804 [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 227/474 (47%), Gaps = 87/474 (18%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDG--ENKCKVSYLVGPGF--AEVRYLHWYG 56
           MS ++ + L  D FT M  L+FLKFYNS      +N C+  +  G      E+ YLHW G
Sbjct: 167 MSNVESMKLSADIFTGMLSLKFLKFYNSHCSKWCKNDCRFRFPGGLDCFPDELVYLHWQG 226

Query: 57  YPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLH 116
           YPL+ LP N +P+KL+ + + + +I+QLW+  ++ G+L+  ++  C   T     S    
Sbjct: 227 YPLEYLPLNFNPKKLIDLSLRYSSIKQLWEYEKNTGELRSSLNLEC--CTSLAKFSSIQQ 284

Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 176
           +D LV+LNL +C +L+ LP  I  L+FLK L L GCSKLK  P IS   NIE +YL+GT+
Sbjct: 285 MDSLVSLNLRDCINLKRLPKSI-NLKFLKVLVLSGCSKLKKFPTISE--NIESLYLDGTS 341

Query: 177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG--- 233
           ++ +P SIE L  L+ L L NC          C+L  L ++    C SL+++   +    
Sbjct: 342 VKRVPESIESLRNLAVLNLKNC----------CRLMRLQYLDAHGCISLETVAKPMTLLV 391

Query: 234 -----------------NLEALDSLIAEGTAIREV-----------------YFFQSS-- 257
                            N +A ++++A      ++                 Y FQ    
Sbjct: 392 IAEKTHSTFVFTDCFKLNRDAQENIVAHTQLKSQILANGYLQRNHKVQYLRFYHFQELVL 451

Query: 258 ---GRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKE 314
                +  PGN++P+WF  Q +GSS  T   PH   + ++K IG +   VV F+D+  + 
Sbjct: 452 GPLAAVSFPGNDLPLWFRHQRMGSSMETHLPPH---WCDDKFIGLSLCIVVSFKDYEDRT 508

Query: 315 KRRFHLFCEFMKAKPEDCTEPLVGRCFLWHFNY------------VEADHLLLGYYFFGD 362
             RF + C+  K + ED    +   C L  +              + +DH+ + Y    +
Sbjct: 509 S-RFSVICK-CKFRNED-GNSISFTCNLGGWTESSASSSLEEPRRLTSDHVFISY----N 561

Query: 363 HDFSAFRKH---NCDHVAVKFYLEDVNNQHERL-DCCPVKKCGIHLLYAPDSTE 412
           + F A + H    C +    F   + + + +R  D C V KCG+  LYAPD  +
Sbjct: 562 NCFYAKKSHELNRCCNTTASFKFFNTDGKAKRKPDFCEVVKCGMSYLYAPDEND 615

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/273 (41%), Positives = 154/273 (56%), Gaps = 31/273 (11%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLK 60
           +S  KE++     FT+M +LR L+FYN K +G  K   + L        R L+W+ YPLK
Sbjct: 545 LSASKELHFSAGAFTEMNRLRVLRFYNVKMNGNLKFLSNNL--------RSLYWHEYPLK 596

Query: 61  SLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHS-------- 112
           SLPSN HP+KLV + M    ++QLW   +   KLK I      + T++P+ S        
Sbjct: 597 SLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSGAPNLERL 656

Query: 113 --------LTLH-----LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP 159
                   + +H     L KL+ LNL  CK+L+   + I  +  L+ L L GCSKLK  P
Sbjct: 657 ILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSI-HMNSLQILTLSGCSKLKKFP 715

Query: 160 E-ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
           E + +  ++  + L+ TA+ ELPSSI  L+ L  L L NCK+L SLP SLCKL SL  + 
Sbjct: 716 EMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILT 775

Query: 219 LRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
           L  CS LK LPDELG+L  L +L A+G+ I+EV
Sbjct: 776 LAGCSELKKLPDELGSLRCLVNLNADGSGIQEV 808

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 158/276 (57%), Gaps = 32/276 (11%)

Query: 4   IKEIYLHPDTFTKMCKLRFLKFYNSKDDGE-------NKCKVSYLVGPGFA--EVRYLHW 54
           +KEI+   + F +M KLR LK YNS + G+          K  +     F   ++RYL+W
Sbjct: 553 LKEIHYTTEAFAEMKKLRLLKVYNSHNSGDFEYASRNENYKRPFSQDFEFPSNKLRYLYW 612

Query: 55  YGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLT 114
           + YPLKSLPSN HP+ LV + +    +++LW  V+H  KL+ I      +  ++P+ S  
Sbjct: 613 HRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHMEKLECIDLSHSQYLVRTPDFSGI 672

Query: 115 LHLD---------------------KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCS 153
            +L+                     KL+ LNL +CK+L+  P+ I  LE LK L L GCS
Sbjct: 673 PNLERLIFEGCTDLREVHQSLGVLSKLIFLNLKDCKNLQCFPSSI-ELESLKVLILSGCS 731

Query: 154 KLKTLPEI-SSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLN 212
           KL   PEI  +   +  ++L+GTAI+ELP S+E L+ L  L L NC+RL +LPSS+C L 
Sbjct: 732 KLDNFPEILENMEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLK 791

Query: 213 SLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI 248
           SL+ + L  CS L+ LP+ LGNLE L  L+A+G+A+
Sbjct: 792 SLSTLTLSGCSQLEKLPENLGNLECLVELVADGSAV 827

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/265 (39%), Positives = 145/265 (54%), Gaps = 25/265 (9%)

Query: 2   SRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFA----EVRYLHWYGY 57
           S I +I L+ + F +M  LRFLKFY S   G  K      +  G      E+RYLHW+GY
Sbjct: 533 SMINKIELNSNAFGRMYNLRFLKFYQSYIHGGFKECTKIRLPQGLDSLSNELRYLHWHGY 592

Query: 58  PLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLK-------QIISRACNFFTKSPN 110
           PLKSLP+ IH   LV + +P+  +++LW   +   KLK       Q + R     T S  
Sbjct: 593 PLKSLPARIHLMNLVVLVLPYSKVKRLWKGCKDLKKLKVIDLSYSQALIRITELTTASNL 652

Query: 111 HSL-------------TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKT 157
             +             T     L  L +N C  L  LP+ I +L+ L+ L L GCS L++
Sbjct: 653 SYMKLSGCKNLRSMPSTTRWKSLSTLEMNYCTKLESLPSSICKLKSLESLSLCGCSNLQS 712

Query: 158 LPEI-SSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF 216
            PEI  S   ++V+ LNGTAI+ELPSSIE L  LS++YL+NC+ L  LP S C L +L +
Sbjct: 713 FPEILESMDRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLPESFCNLKALYW 772

Query: 217 IYLRWCSSLKSLPDELGNLEALDSL 241
           ++L +C  L+ LP++L NL  L+ L
Sbjct: 773 LFLTFCPKLEKLPEKLSNLTTLEDL 797

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759605|dbj|BAB11393.1| disease resistance protein RPS4 [Arabidopsis thaliana]

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 42/283 (14%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNS---KDDGENKCKVSYLVGPGF--AEVRYLHWY 55
           M  +KE+ L  DTF KM  LR+LKFYNS   ++      K+++  G  F   E+RYL+W 
Sbjct: 566 MFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQELRYLNWL 625

Query: 56  GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL 115
            YP K+LP N  P+ L+ +++P+  I+Q+W++ +    L+ +            NHS  L
Sbjct: 626 KYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWL----------DLNHSSKL 675

Query: 116 H-------LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG--- 165
           H         KL ++NL  C  L+ LP  +  +E L  L+L GC+ L++LP+I+  G   
Sbjct: 676 HSLSGLSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCTSLESLPDITLVGLRT 735

Query: 166 -----------------NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSL 208
                            N+E +YL+GTAI+ELPS+I  L +L +L L +CK L SLP S+
Sbjct: 736 LILSNCSRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSI 795

Query: 209 CKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
             L ++  I L  CSSL+S P+   NL+ L +L+ +GTAI+++
Sbjct: 796 GNLKAIQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAIKKI 838

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242334|ref|NP_199333.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|332007833|gb|AED95216.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 42/283 (14%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNS---KDDGENKCKVSYLVGPGF--AEVRYLHWY 55
           M  +KE+ L  DTF KM  LR+LKFYNS   ++      K+++  G  F   E+RYL+W 
Sbjct: 566 MFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQELRYLNWL 625

Query: 56  GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL 115
            YP K+LP N  P+ L+ +++P+  I+Q+W++ +    L+ +            NHS  L
Sbjct: 626 KYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWL----------DLNHSSKL 675

Query: 116 H-------LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG--- 165
           H         KL ++NL  C  L+ LP  +  +E L  L+L GC+ L++LP+I+  G   
Sbjct: 676 HSLSGLSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCTSLESLPDITLVGLRT 735

Query: 166 -----------------NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSL 208
                            N+E +YL+GTAI+ELPS+I  L +L +L L +CK L SLP S+
Sbjct: 736 LILSNCSRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSI 795

Query: 209 CKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
             L ++  I L  CSSL+S P+   NL+ L +L+ +GTAI+++
Sbjct: 796 GNLKAIQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAIKKI 838

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089535|emb|CBI39354.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 154/299 (51%), Gaps = 49/299 (16%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDD--------------------------GEN 34
           +S  KE+    D FTKM +LR LK  N + D                           +N
Sbjct: 363 LSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWTERNYLYTQN 422

Query: 35  KCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKL 94
           K  +          +R L+W+GYPLKS PSN HPEKLV + M    ++QLW+  +   KL
Sbjct: 423 KLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKL 482

Query: 95  KQIISRACNFFTKSPNHS----------------LTLH-----LDKLVNLNLNNCKSLRI 133
           K I        TK+P+ S                + +H     L KL+ LNL  CK L+ 
Sbjct: 483 KSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKS 542

Query: 134 LPAGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNGTAIEELPSSIECLSRLSA 192
             + I  +E L+ L L GCSKLK  PEI  +  ++  ++L+G+ I ELPSSI CL+ L  
Sbjct: 543 FSSSI-HMESLQILTLSGCSKLKKFPEIQENMESLMELFLDGSGIIELPSSIGCLNGLVF 601

Query: 193 LYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
           L L NCK+L SLP S C+L SL  + L  CS LK LPD+LG+L+ L  L A+G+ I+EV
Sbjct: 602 LNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEV 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744796|emb|CBI38064.3| unnamed protein product [Vitis vinifera]

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 157/306 (51%), Gaps = 56/306 (18%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNSK------------------------------- 29
           +S  KE++     FT+M +LR L+FYN K                               
Sbjct: 103 LSASKELHFSAGAFTEMNRLRVLRFYNVKMNGSLEYLSEKELFDTTYHPWRWRAHEIQRA 162

Query: 30  DDGENKCKVSYLVGPGFAE--VRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDD 87
           D+ +  CK+       F    +R L+W+ YPLKSLPSN HP+KLV + M    ++QLW  
Sbjct: 163 DEMQTDCKLHLSGDLKFLSNNLRSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKG 222

Query: 88  VEHNGKLKQIISRACNFFTKSPNHS----------------LTLH-----LDKLVNLNLN 126
            +   KLK I      + T++P+ S                + +H     L KL+ LNL 
Sbjct: 223 DKSFEKLKFIKLSHSQYLTRTPDFSGAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLE 282

Query: 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIE 185
            CK+L+   + I  +  L+ L L GCSKLK  PE + +  ++  + L+ TA+ ELPSSI 
Sbjct: 283 GCKNLKSFASSI-HMNSLQILTLSGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIG 341

Query: 186 CLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG 245
            L+ L  L L NCK+L SLP SLCKL SL  + L  CS LK LPDELG+L  L +L A+G
Sbjct: 342 RLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILTLAGCSELKKLPDELGSLRCLVNLNADG 401

Query: 246 TAIREV 251
           + I+EV
Sbjct: 402 SGIQEV 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495221|ref|XP_002274238.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/273 (38%), Positives = 148/273 (54%), Gaps = 23/273 (8%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLK 60
           MS  KEI+L  D F KM KLR L+ Y++  +  +   +         E+RYLHW G+ L+
Sbjct: 529 MSASKEIHLTTDAFKKMKKLRLLRVYHNLKNISDTIHLPQDFKFPSHELRYLHWDGWTLE 588

Query: 61  SLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKL 120
           SLPSN H EKLV + + H +I++LW + +  GKLK I         + PN S   H+ +L
Sbjct: 589 SLPSNFHGEKLVELSLKHSSIKRLWKEHKCLGKLKVINLSNSQHLVECPNLSGAPHVKRL 648

Query: 121 V---------------------NLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP 159
           +                      LN+ NCK L   P+ I  LE LK L+L GCSKL   P
Sbjct: 649 ILDGCTSLLEVHPSVAKLKRLTILNMKNCKMLHHFPS-ITGLESLKVLNLSGCSKLDKFP 707

Query: 160 EISSAGN-IEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
           EI      +  + L GTAI ELPSS+  L +L +L + NCK LK LPS++C L SL  + 
Sbjct: 708 EIQGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCKNLKILPSNICSLKSLETLV 767

Query: 219 LRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
              CS L+  P+ +  +E+L  L+ +GT+I+E+
Sbjct: 768 FSGCSGLEMFPEIMEVMESLQKLLLDGTSIKEL 800

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822714|emb|CAN68293.1| hypothetical protein VITISV_015601 [Vitis vinifera]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/273 (38%), Positives = 148/273 (54%), Gaps = 23/273 (8%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLK 60
           MS  KEI+L  D F KM KLR L+ Y++  +  +   +         E+RYLHW G+ L+
Sbjct: 542 MSASKEIHLTTDAFKKMKKLRLLRVYHNLKNISDTIHLPQDFKFPSHELRYLHWDGWTLE 601

Query: 61  SLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKL 120
           SLPSN H EKLV + + H +I++LW + +  GKLK I         + PN S   H+ +L
Sbjct: 602 SLPSNFHGEKLVELSLKHSSIKRLWKEHKCLGKLKVINLSNSQHLVECPNLSGAPHVKRL 661

Query: 121 V---------------------NLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP 159
           +                      LN+ NCK L   P+ I  LE LK L+L GCSKL   P
Sbjct: 662 ILDGCTSLLEVHPSVAKLKRLTILNMKNCKMLHHFPS-ITGLESLKVLNLSGCSKLDKFP 720

Query: 160 EISSAGN-IEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
           EI      +  + L GTAI ELPSS+  L +L +L + NCK LK LPS++C L SL  + 
Sbjct: 721 EIQGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCKNLKILPSNICSLKSLETLV 780

Query: 219 LRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
              CS L+  P+ +  +E+L  L+ +GT+I+E+
Sbjct: 781 FSGCSGLEMFPEIMEVMESLQKLLLDGTSIKEL 813

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.625	0.220	0.328	2.5e-34
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.611	0.210	0.361	2.7e-32
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.580	0.194	0.342	2e-31
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.609	0.220	0.343	1.3e-28
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.696	0.291	0.312	5.8e-28
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.573	0.178	0.350	1.5e-27
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.462	0.163	0.371	2.1e-27
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.559	0.200	0.329	3.3e-27
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.573	0.198	0.329	4.5e-27
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.537	0.189	0.344	5.6e-27

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
 Identities = 96/292 (32%), Positives = 148/292 (50%)

Query:    14 FTKMCKLRFLKFYNSK--DDGENKCKVSYLVGP--GFAEVRYLHWYGYPLKSLPSNIHPE 69
             F++MC LR+LK YNS+   D +  CK+++  G       VRYL+W  +PLK L    +P+
Sbjct:   599 FSEMCNLRYLKVYNSQCSRDCDVGCKLTFPDGLKCSMENVRYLYWLQFPLKKLSKAFNPK 658

Query:    70 KLVSIEMPHGNIQQLWDDVEHNGKLKQI-ISRACNFFTKSPNHSLTLHLDKLVNLNLNNC 128
              L+ + +P+  I +LW + +   KLK + +S +      S    +  H   +  LNL  C
Sbjct:   659 NLIELNLPYSKITRLWKESKEISKLKWVDLSHSSELCDISG--LIGAH--NIRRLNLEGC 714

Query:   129 KSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA-IEELPSSIECL 187
               L+ LP  +  +E L  L+L GC++L +LPE     +++ + L+     E+ P   ECL
Sbjct:   715 IELKTLPQEMQEMESLIYLNLGGCTRLVSLPEFKLK-SLKTLILSHCKNFEQFPVISECL 773

Query:   188 SRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA 247
                 ALYL     +K +P+S+  L  L  + L+ C  L SLPD LGNL +L  LI  G +
Sbjct:   774 E---ALYLQGTA-IKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELILSGCS 829

Query:   248 IREVYFF-------QSSGRLLLPGNEI---PMWFS-FQSLGSSSITLKMPHA 288
               ++ FF       +S   LLL G  I   P+     QS G S     +P++
Sbjct:   830 --KLKFFPELKETMKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNS 879

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 2.7e-32, P = 2.7e-32
 Identities = 99/274 (36%), Positives = 145/274 (52%)

Query:     1 MSRIK-EIYLHPDTFTKMCKLRFLKFYNSKDDGENKC--KVSYLVGPGFA--EVRYLHWY 55
             M+ +K E+ L   TF  MC LR+LK Y+S    + K   K++   G  F   EVRYLHW 
Sbjct:   556 MNEMKREMSLDSCTFKSMCGLRYLKIYSSHCPQQCKPNNKINLPDGLNFPLKEVRYLHWL 615

Query:    56 GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG--KLKQI-ISRACNFFTKSPNHS 112
              +PLK +P + +P+ LV +++PH  I+++W D +H    KLK + +S + N +  S    
Sbjct:   616 EFPLKEIPPDFNPQNLVDLKLPHSKIERIWSDDKHKDTPKLKWVNLSHSSNLWDIS---G 672

Query:   113 LTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 172
             L+    +LV LNL  C SL+ LP     L  L+ L L  CS LK    IS   N+E +YL
Sbjct:   673 LS-KAQRLVFLNLKGCTSLKSLPE--INLVSLEILILSNCSNLKEFRVISQ--NLETLYL 727

Query:   173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDEL 232
             +GT+I+ELP +   L RL  L +  C +LK  P  L  L +L  + L  C  L++ P   
Sbjct:   728 DGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELILSDCWKLQNFPAIC 787

Query:   233 GNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNE 266
               ++ L+ L  + T I E+    S   L L  N+
Sbjct:   788 ERIKVLEILRLDTTTITEIPMISSLQCLCLSKND 821

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 88/257 (34%), Positives = 141/257 (54%)

Query:     1 MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKC---KVSYLVGPGFA--EVRYLHWY 55
             M  +KE+ L  DTF KM  LR+LKFYNS    E +    K+++  G  F   E+RYL+W 
Sbjct:   566 MFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQELRYLNWL 625

Query:    56 GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL 115
              YP K+LP N  P+ L+ +++P+  I+Q+W++ +    L+ +     N  +K  + S   
Sbjct:   626 KYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWL---DLNHSSKLHSLSGLS 682

Query:   116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 175
                KL ++NL  C  L+ LP  +  +E L  L+L GC+ L++LP+I+  G   ++  N +
Sbjct:   683 RAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCTSLESLPDITLVGLRTLILSNCS 742

Query:   176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
               +E     +    L  LYLD    +K LPS++  L  L  + L+ C +L SLPD +GNL
Sbjct:   743 RFKEFKLIAK---NLEELYLDGTA-IKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNL 798

Query:   236 EALDSLIAEGTAIREVY 252
             +A+  +I  G +  E +
Sbjct:   799 KAIQEIILSGCSSLESF 815

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 93/271 (34%), Positives = 139/271 (51%)

Query:     1 MSRIK-EIYLHPDTFTKMCKLRFLKFYNSKDDGE----NKCKVSYLVGPGFAEVRYLHWY 55
             +S +K E  L  + F  M  LR+LK YNS    E    NK  +   +     EVR LHW 
Sbjct:   564 LSEVKVETSLDREHFKNMRNLRYLKLYNSHCPHECLTNNKINMPDGLELPLKEVRCLHWL 623

Query:    56 GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL 115
              +PL+ LP++  P  LV +++P+  I++LWD V+    LK +     N  +K  + S   
Sbjct:   624 KFPLEELPNDFDPINLVDLKLPYSEIERLWDGVKDTPVLKWV---DLNHSSKLCSLSGLS 680

Query:   116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 175
                 L  LNL  C SL  L      L  LK L L  CS  K  P I    N++ +YL+GT
Sbjct:   681 KAQNLQRLNLEGCTSLESLRD--VNLTSLKTLTLSNCSNFKEFPLIPE--NLKALYLDGT 736

Query:   176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
             +I +LP ++  L RL  L + +CK L+++P+ + +L +L  + L  CS LK  P E+ N 
Sbjct:   737 SISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSELKTLQKLVLSGCSKLKEFP-EI-NK 794

Query:   236 EALDSLIAEGTAIREVYFFQSSGRLLLPGNE 266
              +L  L+ +GT+I+ +    S   L L  N+
Sbjct:   795 SSLKILLLDGTSIKTMPQLPSVQYLCLSRND 825

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 5.8e-28, P = 5.8e-28
 Identities = 99/317 (31%), Positives = 163/317 (51%)

Query:     1 MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-----AEVRYLHWY 55
             MS I+E+++H   F +M  LRFL+FY  K  G+   +    +  GF      +++ L W 
Sbjct:   540 MSEIEELHIHKRAFKRMPNLRFLRFY--KKLGKQSKEARLHLQEGFDKFFPPKLKLLSWD 597

Query:    56 GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL 115
              YP++ +PSN H   LV + M H  +++LW  V+    L+++         + P+ SL  
Sbjct:   598 DYPMRRMPSNFHAGYLVVLRMQHSKLEKLWQGVQPLTCLREMQLWGSKKLKEIPDLSLAT 657

Query:   116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY-LNG 174
             +L+ L    LN+C SL  LP+ I  L  L +L + GC KL+ LP   +  N++ +Y L+ 
Sbjct:   658 NLETLY---LNDCSSLVELPSSIKNLNKLWDLGMKGCEKLELLP---TDINLKSLYRLDL 711

Query:   175 TAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSL-PD--E 231
                  L S  +  S +S LYL N   ++ +P  + K + L  + +R C  LK + P+  +
Sbjct:   712 GRCSRLKSFPDISSNISELYL-NRTAIEEVPWWIQKFSRLKRLRMRECKKLKCISPNISK 770

Query:   232 LGNLEALDSLIAEGTAIREVYFFQSS--GRLLLPGNEIPMWFSFQSLGSS-SITLKMPHA 288
             L +LE LD      T   E    Q S    L+ PG ++P++F++Q+ GSS +I L + H 
Sbjct:   771 LKHLEMLDFSNCIATTEEEALVQQQSVLKYLIFPGGQVPLYFTYQATGSSLAIPLSL-HQ 829

Query:   289 GWFSNNKVIGFAYSAVV 305
                S  +++GF    V+
Sbjct:   830 SSLSQ-QLLGFRACVVL 845

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 89/254 (35%), Positives = 134/254 (52%)

Query:     1 MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLK 60
             MS +K  ++ PD F  M  LRFLK Y+S      + +    +     E+R LHW  YPL+
Sbjct:   369 MSNLK-FFVKPDAFKSMHNLRFLKIYSSNPGKHQRIRFREALQSLPNELRLLHWEDYPLQ 427

Query:    61 SLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKL 120
             SLP +  P  LV + MP+  +Q+LW   ++   LK +  R  +         L +    +
Sbjct:   428 SLPQHFDPTHLVELNMPYSKLQKLWGGTKNLEMLKMV--RLSHSQDLVEIEEL-IKSKNI 484

Query:   121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKT--LPEISS-AGNIEVMYLNGTAI 177
               ++L  C  ++  PA    L+ L+ ++L GC ++K+  L E      N++ +YL+GT I
Sbjct:   485 EVIDLQGCTKIQSFPA-TRHLQHLRVINLSGCVEIKSTQLEEFQGFPRNLKELYLSGTGI 543

Query:   178 EELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA 237
              E+ SSI  LS L  L L NCKRL++LP     L SL  + L  CS L+++ D   NL+ 
Sbjct:   544 REVTSSIH-LSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQNIQDLPTNLKE 602

Query:   238 LDSLIAEGTAIREV 251
             L   +A GT+IREV
Sbjct:   603 L--YLA-GTSIREV 613

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
 Identities = 74/199 (37%), Positives = 109/199 (54%)

Query:    48 EVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTK 107
             ++R L+WYGY    LPS  +PE LV ++M   N+++LW+  +    LK +     ++  +
Sbjct:   670 KIRSLNWYGYESLCLPSTFNPEFLVELDMRSSNLRKLWEGTKQLRNLKWMDLSYSSYLKE 729

Query:   108 SPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNI 167
              PN S   +L++L    L NC SL  LP+ I +L  L+ LDL  CS L+ LP I +A  +
Sbjct:   730 LPNLSTATNLEEL---KLRNCSSLVELPSSIEKLTSLQILDLENCSSLEKLPAIENATKL 786

Query:   168 EVMYL-NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK 226
               + L N +++ ELP SI   + L  L +  C  L  LPSS+  +  L    L  CSSL 
Sbjct:   787 RELKLQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLV 846

Query:   227 SLPDELGNLEALDSLIAEG 245
             +LP  +GNL+ L  LI  G
Sbjct:   847 TLPSSIGNLQNLCKLIMRG 865

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 3.3e-27, P = 3.3e-27
 Identities = 83/252 (32%), Positives = 138/252 (54%)

Query:     1 MSRIKE-IYLHPDTFTKMCKLRFLKFYNSKDDGENKC--KVSYLVGPGFA--EVRYLHWY 55
             MS +K+ + L   TF KM  LR+LKFY+S+ D E +   K+++  G  F   E+RYL+W 
Sbjct:   556 MSELKKKLPLDRSTFIKMRNLRYLKFYSSRCDRECEADSKLNFPEGLEFPLDEIRYLYWL 615

Query:    56 GYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI-ISRACNFFTKSPNHSLT 114
              +PL  LP + +P+ L    +P+  I++LW+  +   KLK + +S +     K  N S  
Sbjct:   616 KFPLMKLPKDFNPKNLTDFNLPYSEIEELWEGAKDTQKLKWVDLSHS----RKLCNLSGL 671

Query:   115 LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG 174
             L+ + L  LNL  C SL  LP  + R++ L  L++ GC+ L+ LP ++      ++  N 
Sbjct:   672 LNAESLQRLNLEGCTSLEELPREMKRMKSLIFLNMRGCTSLRVLPRMNLISLKTLILTNC 731

Query:   175 TAIEELPSSIECLS-RLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG 233
             ++I++     + +S  L  L+LD    +  LP+ + KL  L  + L+ C  L ++P+ LG
Sbjct:   732 SSIQKF----QVISDNLETLHLDGTA-IGKLPTDMVKLQKLIVLNLKDCKMLGAVPEFLG 786

Query:   234 NLEALDSLIAEG 245
              L+AL  L+  G
Sbjct:   787 KLKALQELVLSG 798

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 85/258 (32%), Positives = 138/258 (53%)

Query:     2 SRIKEIYLHPDTFTKMCKLRFLKFYNSK-DDG-ENKCKVSYLVGPGFA--EVRYLHWYGY 57
             S+++ + L    F  M  L++LK Y+S    G E + K+    G  F   E+ YLHW+GY
Sbjct:   549 SKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFLPNELTYLHWHGY 608

Query:    58 PLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI-ISRACNFFTKSPNHSLTL- 115
             PL+S+P +  P+ LV +++PH  ++++WDD +  G LK + +S + N         L L 
Sbjct:   609 PLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINL-----RQCLGLA 663

Query:   116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG- 174
             +   L  LNL  C SL+ LP+ I  LE L  L+L  C+ L++LP+     +++ + L+G 
Sbjct:   664 NAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGC 723

Query:   175 TAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGN 234
             +++++ P   E    +  L LD    +KSLP S+     L  + L+ C  LK L  +L  
Sbjct:   724 SSLKKFPLISE---NVEVLLLDGTV-IKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYK 779

Query:   235 LEALDSLIAEGTAIREVY 252
             L+ L  LI  G +  EV+
Sbjct:   780 LKCLQELILSGCSQLEVF 797

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 5.6e-27, P = 5.6e-27
 Identities = 84/244 (34%), Positives = 132/244 (54%)

Query:     8 YLHPDTFTKMCKLRFLKFYNSK--DDGENKCKVSYLVG---PGFAEVRYLHWYGYPLKSL 62
             Y H   F  M  LR+LK Y++    + E+  K+++  G   P   EVRYLHW  +PLK +
Sbjct:   574 YRH--AFAMMRDLRYLKIYSTHCPQECESDIKLNFPEGLLLP-LNEVRYLHWLKFPLKEV 630

Query:    63 PSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL-HLDKLV 121
             P + +P  LV +++P+  I+++W+D +   KLK +     N  +K  N    L     L 
Sbjct:   631 PQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWV---NLNH-SKKLNTLAGLGKAQNLQ 686

Query:   122 NLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP 181
              LNL  C +L+ +   +  ++FL  L+L GC+ LK+LPEI    +++ + L+G +  +  
Sbjct:   687 ELNLEGCTALKEMHVDMENMKFLVFLNLRGCTSLKSLPEIQLI-SLKTLILSGCSKFKTF 745

Query:   182 SSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
               I    +L ALYLD    +K LP  + +L  L  + ++ C  LK LPD LG L+AL+ L
Sbjct:   746 QVIS--DKLEALYLDGTA-IKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEEL 802

Query:   242 IAEG 245
             I  G
Sbjct:   803 ILSG 806

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	422
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-33
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-28
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  133 bits (335), Expect = 2e-33
 Identities = 93/298 (31%), Positives = 143/298 (47%), Gaps = 65/298 (21%)

Query: 1   MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF----AEVRYLHWYG 56
           +  I E+++H + F  M  L FLKFY  K D   K +V + +  GF     ++R L W  
Sbjct: 541 IDEIDELHIHENAFKGMRNLLFLKFYTKKWD--QKKEVRWHLPEGFDYLPPKLRLLRWDK 598

Query: 57  YPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLH 116
           YPL+ +PSN  PE LV ++M    +++LWD V     L+ I  R      + P+ S+  +
Sbjct: 599 YPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATN 658

Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELD-----------------------LWGCS 153
           L+    L L++C SL  LP+ I  L  L++LD                       L GCS
Sbjct: 659 LET---LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715

Query: 154 KLKTLPEISSAGNIEVMYLNGTAIEELPSSIE---------CLSR--------------- 189
           +LK+ P+IS+  NI  + L+ TAIEE PS++          C  +               
Sbjct: 716 RLKSFPDIST--NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773

Query: 190 ------LSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
                 L+ L+L +   L  LPSS+  L+ L  + +  C +L++LP  + NLE+L+SL
Sbjct: 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  116 bits (292), Expect = 7e-28
 Identities = 101/396 (25%), Positives = 165/396 (41%), Gaps = 47/396 (11%)

Query: 49   VRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKS 108
            + +L      ++  PSN+  E L  + +     ++LW+ V+    L  ++S +      S
Sbjct: 727  ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786

Query: 109  PNHSLT------LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS 162
               SL        +L KL +L + NC +L  LP GI  LE L+ LDL GCS+L+T P+IS
Sbjct: 787  DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845

Query: 163  SAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWC 222
            +  NI  + L+ T IEE+P  IE  S LS L ++ C  L+ +  ++ KL  L  +    C
Sbjct: 846  T--NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903

Query: 223  SSLK------SLPDELGNLEALDSLIAEGTAIREVYFFQ-----------SSGRLLLPGN 265
             +L       S  +     + + S +     I  +  F               +L+L G 
Sbjct: 904  GALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGE 963

Query: 266  EIPMWFSFQSLGSSSITLKMPHAG----WFSNNKVIGFAYSAVVGFRD-HHVKEKRRFHL 320
            E+P +F+ ++ G+S   + + H      +F       F   AVV       +       +
Sbjct: 964  EVPSYFTHRTTGASLTNIPLLHISPCQPFFR------FRACAVVDSESFFIISVSFDIQV 1017

Query: 321  FCEFMKAKPEDCTEPLVGRCFLWHFNYVEADHL-LLGYYFFGDHDFSAFRKHNCDHVAVK 379
             C F+         P     F       +  HL +    F  + D +   + N DHV ++
Sbjct: 1018 CCRFIDRLGNHFDSPYQPHVFS---VTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQ 1074

Query: 380  FYLEDVNNQHERLDCCPVKKCGIHLLYAPDSTEPTE 415
            F L + N+Q +      +K CGI L     S   T 
Sbjct: 1075 FRLTNKNSQLK------LKGCGIRLSEDDSSLNNTL 1104

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 18/203 (8%)

Query: 110 NHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV 169
              + L    L  L+L++   +  LP+ +  L  LK LDL           +S+  N+  
Sbjct: 132 PPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190

Query: 170 MYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP 229
           + L+G  I +LP  IE LS L  L L N   +  L SSL  L +L+ + L   + L+ LP
Sbjct: 191 LDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELS-NNKLEDLP 248

Query: 230 DELGNLEALDSLIAEGTAIREVYFFQSSGRL-----------LLPGNEIPMWFSFQSLGS 278
           + +GNL  L++L      I  +    S   L                   +    + L +
Sbjct: 249 ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 279 SSITLKMPHAG----WFSNNKVI 297
             +TLK           +NN + 
Sbjct: 309 LLLTLKALELKLNSILLNNNILS 331

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 70  KLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK 129
           ++VSI++   NI              Q I+ + N  +      +      L  LNL+N  
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 130 SLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECL 187
               +P G   +  L+ LDL        +P +I S  +++V+ L G  +  ++P+S+  L
Sbjct: 130 FTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 188 SRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
           + L  L L + + +  +P  L ++ SL +IYL + +    +P E+G L +L+ L
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	422
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.5
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.47
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
PLN03150	623	hypothetical protein; Provisional	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
PLN03150	623	hypothetical protein; Provisional	98.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.8
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.74
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.68
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.53
PRK15386	426	type III secretion protein GogB; Provisional	98.52
PRK15386	426	type III secretion protein GogB; Provisional	98.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.03
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.69
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.34
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.25
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.45
KOG4341	483	consensus F-box protein containing LRR [General fu	96.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.85
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	95.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.61
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.39
KOG4341	483	consensus F-box protein containing LRR [General fu	95.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.85
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.11
smart00370	26	LRR Leucine-rich repeats, outliers.	92.11
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.95
smart00370	26	LRR Leucine-rich repeats, outliers.	88.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.87
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.08

>PLN03210 Resistant to P

Probab=100.00  E-value=5.9e-41  Score=374.56  Aligned_cols=394  Identities=31%  Similarity=0.499  Sum_probs=260.2

Q ss_pred             CCCeeeeeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC--CCeeEEEecCCCCCCCCCCCCCCCceEEEccC
Q 014575            1 MSRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF--AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPH   78 (422)
Q Consensus         1 ~s~~~~~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~--~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~   78 (422)
                      +++++++++++++|.+|++|++|+++++.........+++|+++..  .+||+|+|.+|+++++|..|.+++|++|+|++
T Consensus       541 ~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~  620 (1153)
T PLN03210        541 IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQG  620 (1153)
T ss_pred             cCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcC
Confidence            4567789999999999999999999887544344556789999988  78999999999999999999999999999999


Q ss_pred             CccccccccccCCcchHHHHHh----hccCCCCCCcc-----------------hhhhcCCCCcEEeccCCCCCcccccc
Q 014575           79 GNIQQLWDDVEHNGKLKQIISR----ACNFFTKSPNH-----------------SLTLHLDKLVNLNLNNCKSLRILPAG  137 (422)
Q Consensus        79 ~~l~~l~~~~~~l~~L~~l~~~----~~~~~~~~~~~-----------------~li~~l~~L~~L~L~~~~~l~~lp~~  137 (422)
                      |+++.+|.++..+++|+.+...    +..+++.+.++                 ..++.+++|+.|++++|..++.+|..
T Consensus       621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            9999999999999999887322    23333333222                 22566677777777777777777765


Q ss_pred             CCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCc---------------------------------------
Q 014575          138 IFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE---------------------------------------  178 (422)
Q Consensus       138 i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~---------------------------------------  178 (422)
                      + ++++|+.|++++|..++.+|.+.  ++|+.|+|++|.++                                       
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence            5 67777777777776665555332  13444444444433                                       


Q ss_pred             ---------------ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCC--------------
Q 014575          179 ---------------ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP--------------  229 (422)
Q Consensus       179 ---------------~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp--------------  229 (422)
                                     ++|.+++++++|+.|++++|+.++.+|..+ .+++|+.|++++|..+..+|              
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence                           455556666667777777766666666654 56666666666665544433              


Q ss_pred             ------cccCCCCCCCEEeccCc-ccccccc-------------------------------------------------
Q 014575          230 ------DELGNLEALDSLIAEGT-AIREVYF-------------------------------------------------  253 (422)
Q Consensus       230 ------~~~~~l~~L~~L~l~~n-~l~~lp~-------------------------------------------------  253 (422)
                            ..+..+++|+.|++++| .++.+|.                                                 
T Consensus       857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~  936 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCIN  936 (1153)
T ss_pred             CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccc
Confidence                  23334444555544442 2222211                                                 


Q ss_pred             c------------c-c--cccccCCCCcCCCccccccCcceeEE-EecCCCCCCCCCccceEEEEEEEcccccccccccc
Q 014575          254 F------------Q-S--SGRLLLPGNEIPMWFSFQSLGSSSIT-LKMPHAGWFSNNKVIGFAYSAVVGFRDHHVKEKRR  317 (422)
Q Consensus       254 f------------~-~--~~~~~lpg~~iP~wf~~~~~g~s~i~-~~lp~~~w~~~~~~~g~~~c~v~~~~~~~~~~~~~  317 (422)
                      |            + .  ...+.+||.++|+||.|++.|++ ++ +.+|+ .| ....+.||++|+|+++.... +....
T Consensus       937 f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~s-l~~i~l~~-~~-~~~~~~~f~~c~v~~~~~~~-~~~~~ 1012 (1153)
T PLN03210        937 FINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGAS-LTNIPLLH-IS-PCQPFFRFRACAVVDSESFF-IISVS 1012 (1153)
T ss_pred             cccccCCCchhhhcccccceEEECCCccCchhccCCcccce-eeeeccCC-cc-cCCCccceEEEEEEecCccc-cCCCc
Confidence            0            0 0  01124899999999999999999 88 99854 26 66789999999999988665 33346


Q ss_pred             eEEEEEE-ecCCCCCcccCccCceeceecCcccCCeEEEEEeeCCCcccc---ccccCCcceEEEEEEEEeccCccccCC
Q 014575          318 FHLFCEF-MKAKPEDCTEPLVGRCFLWHFNYVEADHLLLGYYFFGDHDFS---AFRKHNCDHVAVKFYLEDVNNQHERLD  393 (422)
Q Consensus       318 ~~~~c~~-~~~~~~~~~~~~~~~~~~~~~~~~~sdH~~l~y~~~~~~~~~---~~~~~~~~~~~f~f~~~~~~~~~~~~~  393 (422)
                      +.+.|.| |++..|+.++.. .....|. .....+|++++.. +. ...+   ...+..|.+|+++|.+.+.   .   .
T Consensus      1013 ~~~~~~c~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~f~~~~~---~---~ 1082 (1153)
T PLN03210       1013 FDIQVCCRFIDRLGNHFDSP-YQPHVFS-VTKKGSHLVIFDC-CF-PLNEDNAPLAELNYDHVDIQFRLTNK---N---S 1082 (1153)
T ss_pred             eeEEEEEEEECCCCCccccC-CCceeEe-eeccccceEEecc-cc-cccccccchhccCCceeeEEEEEecC---C---C
Confidence            7888988 888777654311 0000011 1223445554321 11 1111   1222356799999988762   1   2


Q ss_pred             ceeEEEeeeEEEeecCCCC
Q 014575          394 CCPVKKCGIHLLYAPDSTE  412 (422)
Q Consensus       394 ~~~vk~CGv~l~y~~d~~~  412 (422)
                      .++||+||||++|+.+..+
T Consensus      1083 ~~~~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210       1083 QLKLKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred             CeEEEeeeEEEeccCCCcc
Confidence            3799999999999666554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=1.4e-22  Score=225.05  Aligned_cols=231  Identities=18%  Similarity=0.175  Sum_probs=193.6

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCC-C-CCeeEEEecCCCCC-CCCCCCCCCCceEEEccCCcccc-ccc
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPG-F-AEVRYLHWYGYPLK-SLPSNIHPEKLVSIEMPHGNIQQ-LWD   86 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~-~-~~Lr~L~l~~~~l~-~lP~~~~~~~L~~L~L~~~~l~~-l~~   86 (422)
                      +.+|.+|++|+.|++++|.+.+.      +|.++. . .+||+|++++|.+. .+|. ..+++|++|++++|.+.+ ++.
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~------ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~  158 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGP------IPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPN  158 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCc------CChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCCh
Confidence            56899999999999999876543      676655 3 89999999999876 4443 457899999999999974 566


Q ss_pred             cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCC
Q 014575           87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAG  165 (422)
Q Consensus        87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~  165 (422)
                      .+..+++|+++....+.+..  ..+..++.+++|++|+|++|...+.+|..+.++++|++|++++|...+.+| .++.++
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             HHhcCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            78888888888444333322  234447889999999999998888899989999999999999998887888 588999


Q ss_pred             CcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575          166 NIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       166 ~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~  244 (422)
                      +|++|+|++|.++ .+|..++.+++|+.|++++|+..+.+|..+..+++|+.|++++|...+.+|..+.++++|+.|+++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            9999999999987 788899999999999999988888899999999999999999998888999999999999999999


Q ss_pred             Cccccc
Q 014575          245 GTAIRE  250 (422)
Q Consensus       245 ~n~l~~  250 (422)
                      +|.+..
T Consensus       317 ~n~~~~  322 (968)
T PLN00113        317 SNNFTG  322 (968)
T ss_pred             CCccCC
Confidence            998763

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=7.3e-22  Score=219.46  Aligned_cols=232  Identities=19%  Similarity=0.214  Sum_probs=133.5

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCcccc-
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQ-   83 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~-   83 (422)
                      .+++..|.++++|++|++++|.+.+.      +|.  .. ++|++|++++|.+. .+|..+ .+++|++|+|++|.+.+ 
T Consensus       108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~------~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        108 PIPDDIFTTSSSLRYLNLSNNNFTGS------IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             cCChHHhccCCCCCEEECcCCccccc------cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence            35566777999999999999876533      222  12 56677777766654 455555 56667777776666653 


Q ss_pred             ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCC
Q 014575           84 LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EIS  162 (422)
Q Consensus        84 l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~  162 (422)
                      ++..+..+++|++|....+.+.  ...+..++.+++|++|+|++|...+.+|..+.++++|++|++++|...+.+| .++
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLV--GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCc--CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            4445555666665533322221  1122335556666666666665555556555566666666666655555555 355


Q ss_pred             CCCCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEE
Q 014575          163 SAGNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL  241 (422)
Q Consensus       163 ~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L  241 (422)
                      .+++|+.|+|++|.++ .+|.++..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            5556666666655554 455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             eccCcccc
Q 014575          242 IAEGTAIR  249 (422)
Q Consensus       242 ~l~~n~l~  249 (422)
                      ++++|.+.
T Consensus       338 ~L~~n~l~  345 (968)
T PLN00113        338 QLWSNKFS  345 (968)
T ss_pred             ECcCCCCc
Confidence            55555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=2.8e-22  Score=198.62  Aligned_cols=235  Identities=17%  Similarity=0.255  Sum_probs=169.7

Q ss_pred             eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccccc
Q 014575            9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLW   85 (422)
Q Consensus         9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l~   85 (422)
                      |+++ +-+|..|..|+|+.|.+.       ..|.++++ .++-.|+++.|++.++|...  ++..|-.|||++|+++.++
T Consensus        95 iP~d-iF~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP  166 (1255)
T KOG0444|consen   95 IPTD-IFRLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP  166 (1255)
T ss_pred             CCch-hcccccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence            4444 557899999999998743       37889999 99999999999999999876  8899999999999999999


Q ss_pred             ccccCCcchHHH--------HHhhccCCCCCC---------------cchhhhcCCCCcEEeccCCCCCccccccCCCCC
Q 014575           86 DDVEHNGKLKQI--------ISRACNFFTKSP---------------NHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLE  142 (422)
Q Consensus        86 ~~~~~l~~L~~l--------~~~~~~~~~~~~---------------~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~  142 (422)
                      +.+..+.+|+.|        ...+..+|....               .|..+..+.+|..+|++.| .+..+|..+.++.
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~  245 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLR  245 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhh
Confidence            888888777776        122222222211               1112566777777788775 5667777777888


Q ss_pred             CCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCC-CCcccccccCCCCCcEEEccC
Q 014575          143 FLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKR-LKSLPSSLCKLNSLNFIYLRW  221 (422)
Q Consensus       143 ~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~-l~~lp~~l~~l~~L~~L~Ls~  221 (422)
                      +|+.|+||+|.....--..+.-.+|++|+|+.|+++.+|..+..|++|+.|++.+|+. ...||+.|++|..|+.+.+++
T Consensus       246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan  325 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN  325 (1255)
T ss_pred             hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence            8888888887644332234444567777777777777777777777777777776543 246777777777777777765


Q ss_pred             CCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          222 CSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       222 c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                       +.++-+|+.+++|..|+.|.|++|.+-++|+
T Consensus       326 -N~LElVPEglcRC~kL~kL~L~~NrLiTLPe  356 (1255)
T KOG0444|consen  326 -NKLELVPEGLCRCVKLQKLKLDHNRLITLPE  356 (1255)
T ss_pred             -cccccCchhhhhhHHHHHhcccccceeechh
Confidence             5677777777777777777777777777765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=4.8e-20  Score=181.86  Aligned_cols=264  Identities=20%  Similarity=0.227  Sum_probs=150.7

Q ss_pred             eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccc
Q 014575            9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus         9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~   86 (422)
                      ++.++++-++-||.|+|+.|.++     .+..|......++++|++.+|.+..+-.. | .+.+|..|.|+.|+|+.++.
T Consensus       140 v~se~L~~l~alrslDLSrN~is-----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~  214 (873)
T KOG4194|consen  140 VTSEELSALPALRSLDLSRNLIS-----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ  214 (873)
T ss_pred             ccHHHHHhHhhhhhhhhhhchhh-----cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence            44555555566666666665421     11111111114455555555555544332 2 34455555555555555443


Q ss_pred             -------------------------cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCC
Q 014575           87 -------------------------DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRL  141 (422)
Q Consensus        87 -------------------------~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l  141 (422)
                                               .++.+++|+.+....+++..+..-.  |..|.++++|+|+.|+....--..+++|
T Consensus       215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhccccccc
Confidence                                     3344444444433333332222111  6678888888888887666666677888


Q ss_pred             CCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCC------------------------CCCCEEec
Q 014575          142 EFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECL------------------------SRLSALYL  195 (422)
Q Consensus       142 ~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l------------------------~~L~~L~L  195 (422)
                      ++|+.|+||+|.+.+.-+ .++-.++|+.|+|+.|+|+++++ ++..|                        ++|++|+|
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            888888888887655444 45556688888888888887764 34444                        45555555


Q ss_pred             CCCCCCCcccc---cccCCCCCcEEEccCCCCCCCCC-cccCCCCCCCEEeccCcccccccc--c---------------
Q 014575          196 DNCKRLKSLPS---SLCKLNSLNFIYLRWCSSLKSLP-DELGNLEALDSLIAEGTAIREVYF--F---------------  254 (422)
Q Consensus       196 ~~~~~l~~lp~---~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~lp~--f---------------  254 (422)
                      +.|...+.+-+   .+.++++|+.|++.|| .++.+| ..+..+++|++|+|.+|.|..+..  |               
T Consensus       373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSF  451 (873)
T ss_pred             cCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccce
Confidence            55443333322   2556777777777774 445555 456777888888888887776643  2               


Q ss_pred             cccccccCCCCcCCCccccccCcceeEEEec
Q 014575          255 QSSGRLLLPGNEIPMWFSFQSLGSSSITLKM  285 (422)
Q Consensus       255 ~~~~~~~lpg~~iP~wf~~~~~g~s~i~~~l  285 (422)
                      ...|++    .-++.|+-.....++ +....
T Consensus       452 lCDCql----~Wl~qWl~~~~lq~s-v~a~C  477 (873)
T KOG4194|consen  452 LCDCQL----KWLAQWLYRRKLQSS-VIAKC  477 (873)
T ss_pred             EEeccH----HHHHHHHHhcccccc-eeeec
Confidence            223333    345666655555555 66555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=7.4e-20  Score=181.64  Aligned_cols=226  Identities=23%  Similarity=0.319  Sum_probs=181.8

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchH
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLK   95 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~   95 (422)
                      +-.|=.++++|.++|.     .+|.+..- +++++|.+....+..+|... .+.+|+.|.|.+|++..+......++.|+
T Consensus         7 pFVrGvDfsgNDFsg~-----~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGD-----RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLR   81 (1255)
T ss_pred             ceeecccccCCcCCCC-----cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence            3445567888877654     48888777 99999999999999999988 88999999999999999999999999999


Q ss_pred             HHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC--CCCCCCcCEEEee
Q 014575           96 QIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLN  173 (422)
Q Consensus        96 ~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~  173 (422)
                      .+....+++...+.++. |..+..|..|||++| .+...|..+.+-+++-.|+||+|+ +..+|.  +.+++-|-.|+|+
T Consensus        82 sv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HHhhhccccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccc
Confidence            99877777777766666 668999999999997 577888888888899999999976 566663  6777888888889


Q ss_pred             CccCcccCccccCCCCCCEEecCCCCC-------------------------CCcccccccCCCCCcEEEccCCCCCCCC
Q 014575          174 GTAIEELPSSIECLSRLSALYLDNCKR-------------------------LKSLPSSLCKLNSLNFIYLRWCSSLKSL  228 (422)
Q Consensus       174 ~n~i~~lp~~i~~l~~L~~L~L~~~~~-------------------------l~~lp~~l~~l~~L~~L~Ls~c~~l~~l  228 (422)
                      +|.+..+|+.+..|..|++|.|++|..                         +..+|.++..+.+|..+|+|. +.+..+
T Consensus       159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v  237 (1255)
T KOG0444|consen  159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIV  237 (1255)
T ss_pred             cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcc
Confidence            998888888888888888888887642                         224667777777888888875 567777


Q ss_pred             CcccCCCCCCCEEeccCccccccc
Q 014575          229 PDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       229 p~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      |+.+-++.+|+.|+|++|.|+++.
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~  261 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELN  261 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeee
Confidence            777777777777777777666543

>PLN03210 Resistant to P

Probab=99.72  E-value=7e-17  Score=181.44  Aligned_cols=117  Identities=40%  Similarity=0.618  Sum_probs=106.3

Q ss_pred             CcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCC
Q 014575          109 PNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLS  188 (422)
Q Consensus       109 ~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~  188 (422)
                      ..|..++++++|+.|+|++|..++.+|..+ ++++|+.|++++|..+..+|.+.  ++|+.|+|++|+|+++|.+++.++
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~--~nL~~L~Ls~n~i~~iP~si~~l~  869 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS--TNISDLNLSRTGIEEVPWWIEKFS  869 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc--cccCEeECCCCCCccChHHHhcCC
Confidence            345558899999999999999999999877 89999999999999998888765  489999999999999999999999


Q ss_pred             CCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCC
Q 014575          189 RLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSL  228 (422)
Q Consensus       189 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~l  228 (422)
                      +|+.|+|++|+.+..+|..+..+++|+.+++++|..+..+
T Consensus       870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            9999999999999999999999999999999999887644

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=4.8e-20  Score=174.83  Aligned_cols=206  Identities=27%  Similarity=0.347  Sum_probs=170.0

Q ss_pred             EccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhc
Q 014575           39 SYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLH  116 (422)
Q Consensus        39 ~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~  116 (422)
                      .+|+.+.. .+|+.|+.+.|.++.+|+++ .+-.|..++..+|++..+++++..+.+|..+....++....  +++.+. 
T Consensus       105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l--~~~~i~-  181 (565)
T KOG0472|consen  105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL--PENHIA-  181 (565)
T ss_pred             hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC--CHHHHH-
Confidence            35665555 77777777777888777776 66777888888888888887777777776664444333333  233344 


Q ss_pred             CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcccc-CCCCCCEEec
Q 014575          117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIE-CLSRLSALYL  195 (422)
Q Consensus       117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~L  195 (422)
                      ++.|++||...| .++++|..++.+.+|..|+|..|. +..+|+|++++.|++|+++.|.|+.+|..+. ++.+|..|+|
T Consensus       182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL  259 (565)
T KOG0472|consen  182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL  259 (565)
T ss_pred             HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence            889999999886 789999999999999999999964 7889999999999999999999999998875 9999999999


Q ss_pred             CCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          196 DNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       196 ~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      .+ +.+.++|+.+..+.+|.+||+|+ +.+..+|-.++++ .|+.|-+.||.++++-
T Consensus       260 Rd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  260 RD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             cc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchHHHH
Confidence            99 57899999999999999999997 5778899999999 8999999999998664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.70  E-value=7e-18  Score=166.72  Aligned_cols=244  Identities=14%  Similarity=0.030  Sum_probs=110.7

Q ss_pred             CeeeeeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCC
Q 014575            3 RIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHG   79 (422)
Q Consensus         3 ~~~~~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~   79 (422)
                      .++--++....|.++++|+.+++.+|.+.       .+|....- .+|+.|.+.+|-+.++.+.-  .+..|+.|||+.|
T Consensus        87 nNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   87 NNKLSHIDFEFFYNLPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             ccccccCcHHHHhcCCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            33444677888888899998888887642       23433333 44555555555544443322  2334444555555


Q ss_pred             ccccccccccCC-cchHHHHHhhccCCCCCCc----------------------chhhhcCCCCcEEeccCCCCCccccc
Q 014575           80 NIQQLWDDVEHN-GKLKQIISRACNFFTKSPN----------------------HSLTLHLDKLVNLNLNNCKSLRILPA  136 (422)
Q Consensus        80 ~l~~l~~~~~~l-~~L~~l~~~~~~~~~~~~~----------------------~~li~~l~~L~~L~L~~~~~l~~lp~  136 (422)
                      .|..++.....- .++++|....+.+.+...-                      +..|.+|++|+.|+|..|.....-..
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            444443322211 3344432222222222211                      11133344444444444432222222


Q ss_pred             cCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCC
Q 014575          137 GIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSL  214 (422)
Q Consensus       137 ~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L  214 (422)
                      .|.+|++|+.|.|..|...+.-. .|-.+.++++|+|..|+++.+.. ++.+|++|+.|+|++|...+.-+++....++|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence            33344444444444433222222 23334445555555555544432 34445555555555544333334444445555


Q ss_pred             cEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          215 NFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       215 ~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +.|+|+.|+...--++.+..++.|++|+|++|++..+.+
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e  358 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE  358 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence            555555543333333344445555555555555544433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=4.5e-19  Score=168.32  Aligned_cols=224  Identities=25%  Similarity=0.291  Sum_probs=151.2

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchH
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLK   95 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~   95 (422)
                      ..|+.|.+++|..       .++..++.. ..|.+|.++.+.+..+|+.+ .++.++.++.++|++.++++.+..+.+++
T Consensus        45 v~l~~lils~N~l-------~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   45 VDLQKLILSHNDL-------EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV  117 (565)
T ss_pred             cchhhhhhccCch-------hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence            4455555555432       223344444 55666666666666666655 55566666666666666666665555555


Q ss_pred             HHHHhhccCC--------------------CCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC
Q 014575           96 QIISRACNFF--------------------TKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL  155 (422)
Q Consensus        96 ~l~~~~~~~~--------------------~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l  155 (422)
                      .+.....+..                    ..+..|.-++++.+|..|++.+|+.....|..+ +++.|+.||...|- +
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~-L  195 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL-L  195 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhh-h
Confidence            5511111111                    111222236667777777777764443333433 57788888877754 4


Q ss_pred             CCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccccccc-CCCCCcEEEccCCCCCCCCCcccC
Q 014575          156 KTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLC-KLNSLNFIYLRWCSSLKSLPDELG  233 (422)
Q Consensus       156 ~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~c~~l~~lp~~~~  233 (422)
                      +.+| +++.|.+|+-|+|..|.|..+| .|+.+..|++|+++. +.+..+|...+ ++.+|..||+.. +.+++.|+.+.
T Consensus       196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c  272 (565)
T KOG0472|consen  196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC  272 (565)
T ss_pred             hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHH
Confidence            4444 6888888888888888888888 677888888888887 56778887765 899999999999 68899999999


Q ss_pred             CCCCCCEEeccCcccccccc
Q 014575          234 NLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       234 ~l~~L~~L~l~~n~l~~lp~  253 (422)
                      -+.+|+.||+++|.|+.+|.
T Consensus       273 lLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             HhhhhhhhcccCCccccCCc
Confidence            99999999999999999986

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.5e-17  Score=141.48  Aligned_cols=169  Identities=24%  Similarity=0.316  Sum_probs=84.7

Q ss_pred             CCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccC
Q 014575           59 LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGI  138 (422)
Q Consensus        59 l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i  138 (422)
                      +..+|.-|+++++..|.+++|+++-.++.+..+.+|+.+...-+.+.++..   -++.+++|+.|++.-| .+..+|..+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~---~issl~klr~lnvgmn-rl~~lprgf   98 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPT---SISSLPKLRILNVGMN-RLNILPRGF   98 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcCh---hhhhchhhhheecchh-hhhcCcccc
Confidence            334556666666666666666666666554333333332111111111111   1444555555555543 344555555


Q ss_pred             CCCCCCCEEEeeCCCCC-CCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcE
Q 014575          139 FRLEFLKELDLWGCSKL-KTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF  216 (422)
Q Consensus       139 ~~l~~L~~L~Ls~~~~l-~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~  216 (422)
                      +.++-|+.|||++|+.. ..+| .|-.|+.|+.|+|+.|.++-+|+.++.+++|+.|.+.. +.+-++|..++.++.|+.
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHH
Confidence            55555555555555433 2334 24445555555555555555555555555555555555 334455555555555555


Q ss_pred             EEccCCCCCCCCCcccC
Q 014575          217 IYLRWCSSLKSLPDELG  233 (422)
Q Consensus       217 L~Ls~c~~l~~lp~~~~  233 (422)
                      |.+.| +.+..+|..++
T Consensus       178 lhiqg-nrl~vlppel~  193 (264)
T KOG0617|consen  178 LHIQG-NRLTVLPPELA  193 (264)
T ss_pred             Hhccc-ceeeecChhhh
Confidence            55555 34445554443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=3.4e-17  Score=139.31  Aligned_cols=161  Identities=22%  Similarity=0.277  Sum_probs=133.7

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEec
Q 014575           47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNL  125 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L  125 (422)
                      ..+..|.++.|.+..+|+.+ .+.+|+.|++++|.|++++..+..+++|+.+....+.+   ...|.-|+.++.|+.|||
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl---~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL---NILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh---hcCccccCCCchhhhhhc
Confidence            67778888889999898888 88899999999999999999999999998883332222   223334888899999999


Q ss_pred             cCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcc
Q 014575          126 NNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       126 ~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      +.|+.. ..+|..++.++.|+.|.|++|..--..|+++++++|+.|.+..|.+-++|..++.++.|++|.+.+ +.+..+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vl  188 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVL  188 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeec
Confidence            987654 468999999999999999998765555689999999999999999999999999999999999999 567888


Q ss_pred             cccccCC
Q 014575          205 PSSLCKL  211 (422)
Q Consensus       205 p~~l~~l  211 (422)
                      |..++.+
T Consensus       189 ppel~~l  195 (264)
T KOG0617|consen  189 PPELANL  195 (264)
T ss_pred             Chhhhhh
Confidence            8876654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=1.5e-14  Score=153.29  Aligned_cols=178  Identities=22%  Similarity=0.291  Sum_probs=117.5

Q ss_pred             CeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccC
Q 014575           48 EVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNN  127 (422)
Q Consensus        48 ~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~  127 (422)
                      +|+.|++.+|.++.+|.  .+++|+.|++++|+|+.++....   +|+.|....+.+...   |.   ...+|+.|+|++
T Consensus       283 ~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~Ls~N~L~~L---P~---lp~~Lq~LdLS~  351 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSL---PT---LPSGLQELSVSD  351 (788)
T ss_pred             hcCEEECcCCccccccc--cccccceeECCCCccccCCCCcc---cccccccccCccccc---cc---cccccceEecCC
Confidence            44555555555555554  23566777777776666544222   233332222222111   11   114688888888


Q ss_pred             CCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccccc
Q 014575          128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSS  207 (422)
Q Consensus       128 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~  207 (422)
                      |+ +..+|..   ..+|+.|++++|. +..+|.+.  ++|+.|+|++|.|+.+|...   ++|+.|++++|. +..+|..
T Consensus       352 N~-Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l~--~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~-LssIP~l  420 (788)
T PRK15387        352 NQ-LASLPTL---PSELYKLWAYNNR-LTSLPALP--SGLKELIVSGNRLTSLPVLP---SELKELMVSGNR-LTSLPML  420 (788)
T ss_pred             Cc-cCCCCCC---Ccccceehhhccc-cccCcccc--cccceEEecCCcccCCCCcc---cCCCEEEccCCc-CCCCCcc
Confidence            74 4566652   3567788888876 44577543  47899999999999888643   578999999964 6678864


Q ss_pred             ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          208 LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       208 l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                         ..+|+.|++++| .+..+|..+.++++|+.|++++|.++..
T Consensus       421 ---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        421 ---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence               356788999885 4668999999999999999999998743

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.51  E-value=6.8e-14  Score=148.88  Aligned_cols=206  Identities=18%  Similarity=0.229  Sum_probs=138.0

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHH
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI   97 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l   97 (422)
                      .+...|+++++++.       .+|..+. .+|+.|++++|.++++|..+. .+|++|++++|+++.++..+.  .+|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-------sLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-------TIPACIP-EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-------cCCcccc-cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEE
Confidence            35677777775532       2343222 678888888888888887663 578888888888887765432  245554


Q ss_pred             HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCcc
Q 014575           98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA  176 (422)
Q Consensus        98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~  176 (422)
                      ....+.+...   |..+  .++|+.|++++|+ +..+|..+.  ++|+.|++++|.. ..+| .+.  ++|+.|++++|.
T Consensus       247 ~Ls~N~L~~L---P~~l--~s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls~N~  315 (754)
T PRK15370        247 ELSINRITEL---PERL--PSALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQSNS  315 (754)
T ss_pred             ECcCCccCcC---ChhH--hCCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhcCCc
Confidence            3333333221   1112  2468888998764 556777653  5788999988764 4455 343  378888888888


Q ss_pred             CcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       177 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      ++.+|..+.  ++|+.|++++|. +..+|..+.  ++|+.|++++|+ +..+|..+.  ++|+.|++++|.++.+|.
T Consensus       316 Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        316 LTALPETLP--PGLKTLEAGENA-LTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNALTNLPE  384 (754)
T ss_pred             cccCCcccc--ccceeccccCCc-cccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCcCCCCCH
Confidence            888876553  578888888864 556777653  688888888864 456776553  578888888888887775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=2.6e-14  Score=151.97  Aligned_cols=206  Identities=19%  Similarity=0.259  Sum_probs=142.3

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHH
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI   97 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l   97 (422)
                      ++|+.|++++|.+.       .+|..+. .+|++|++++|.++++|..+ +.+|+.|+|++|++..++..+.  .+|+.|
T Consensus       199 ~~L~~L~Ls~N~Lt-------sLP~~l~-~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L  267 (754)
T PRK15370        199 EQITTLILDNNELK-------SLPENLQ-GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL  267 (754)
T ss_pred             cCCcEEEecCCCCC-------cCChhhc-cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence            36899999988643       2454332 68999999999999888766 3578999999999888765543  345555


Q ss_pred             HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCcc
Q 014575           98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTA  176 (422)
Q Consensus        98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~  176 (422)
                      ....+.+..   .|.-+  .++|+.|++++|+ +..+|..+.  ++|+.|++++|... .+|. +.  ++|+.|++++|.
T Consensus       268 ~Ls~N~L~~---LP~~l--~~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~  336 (754)
T PRK15370        268 DLFHNKISC---LPENL--PEELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENA  336 (754)
T ss_pred             ECcCCccCc---ccccc--CCCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCc
Confidence            332222221   11111  2478999999884 556776442  57888888887644 4553 43  478888888888


Q ss_pred             CcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       177 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      ++.+|..+.  ++|+.|++++|+ +..+|..+  .++|+.|+|++|+ +..+|..+.  .+|+.|++++|+++.+|.
T Consensus       337 Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~~LP~  405 (754)
T PRK15370        337 LTSLPASLP--PELQVLDVSKNQ-ITVLPETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLVRLPE  405 (754)
T ss_pred             cccCChhhc--CcccEEECCCCC-CCcCChhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcccCch
Confidence            888887663  688888888864 55677765  3678888888864 556776654  367888888888877664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.50  E-value=1.8e-13  Score=145.11  Aligned_cols=197  Identities=23%  Similarity=0.256  Sum_probs=115.4

Q ss_pred             CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHH
Q 014575           19 KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQII   98 (422)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~   98 (422)
                      +|+.|.+.+|.+.       .+|..+  ++|++|++++|.++++|..  +++|+.|++++|.|..++....   +|+.|.
T Consensus       223 ~L~~L~L~~N~Lt-------~LP~lp--~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~---~L~~L~  288 (788)
T PRK15387        223 HITTLVIPDNNLT-------SLPALP--PELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPS---GLCKLW  288 (788)
T ss_pred             CCCEEEccCCcCC-------CCCCCC--CCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchh---hcCEEE
Confidence            5666666666532       133211  5677777777777776642  3566777777776666544222   222221


Q ss_pred             HhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCc
Q 014575           99 SRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE  178 (422)
Q Consensus        99 ~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~  178 (422)
                      ...+.+..   .+.   .+++|+.|+|++|. +..+|..   ..+|+.|++++|. +..+|.+.  .+|+.|+|++|+|+
T Consensus       289 Ls~N~Lt~---LP~---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~lp--~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        289 IFGNQLTS---LPV---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTLP--SGLQELSVSDNQLA  355 (788)
T ss_pred             CcCCcccc---ccc---cccccceeECCCCc-cccCCCC---cccccccccccCc-cccccccc--cccceEecCCCccC
Confidence            11111111   111   23567888888774 4445542   2356667777765 34455443  37888888888888


Q ss_pred             ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          179 ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       179 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      .+|..   ..+|+.|++++| .+..+|..   .++|+.|++++|. +..+|..+   ++|+.|++++|.++.+|.
T Consensus       356 ~LP~l---p~~L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l~---s~L~~LdLS~N~LssIP~  419 (788)
T PRK15387        356 SLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGNR-LTSLPVLP---SELKELMVSGNRLTSLPM  419 (788)
T ss_pred             CCCCC---Ccccceehhhcc-ccccCccc---ccccceEEecCCc-ccCCCCcc---cCCCEEEccCCcCCCCCc
Confidence            77753   245677777774 45567753   3567788887754 44566543   467778888888877775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.47  E-value=1.9e-15  Score=156.74  Aligned_cols=223  Identities=20%  Similarity=0.234  Sum_probs=168.6

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccccccc
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVE   89 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~   89 (422)
                      +-...+.+|+.|++.+|.+       ..+|..+.. .+|++|....|.++.+|... ..+.|+.|+|..|+|..+++.+.
T Consensus       258 ~wi~~~~nle~l~~n~N~l-------~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l  330 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRL-------VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFL  330 (1081)
T ss_pred             HHHHhcccceEecccchhH-------HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHH
Confidence            4445566777777777664       236666666 89999999999999999987 58999999999999999887432


Q ss_pred             CC--cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC--CCCCC
Q 014575           90 HN--GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAG  165 (422)
Q Consensus        90 ~l--~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~--~~~l~  165 (422)
                      .-  ..|..+......+.......  -..++.|+.|.+.+|......-..+-+++.|+.|+|++|. +..||.  +.++.
T Consensus       331 ~v~~~~l~~ln~s~n~l~~lp~~~--e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle  407 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSSNKLSTLPSYE--ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLE  407 (1081)
T ss_pred             hhhhHHHHHHhhhhcccccccccc--chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchH
Confidence            21  12333333333333222111  1245668999999987776655557799999999999975 778883  88899


Q ss_pred             CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEecc
Q 014575          166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAE  244 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~  244 (422)
                      .|+.|+|+||.++.+|..+..+..|++|...+ +.+..+| .+..++.|+.+|++.|+... .+|..... ++|++||++
T Consensus       408 ~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlS  484 (1081)
T KOG0618|consen  408 ELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLS  484 (1081)
T ss_pred             HhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeecc
Confidence            99999999999999999999999999999998 5788899 58899999999999765433 34444433 789999999


Q ss_pred             Ccc
Q 014575          245 GTA  247 (422)
Q Consensus       245 ~n~  247 (422)
                      ||.
T Consensus       485 GN~  487 (1081)
T KOG0618|consen  485 GNT  487 (1081)
T ss_pred             CCc
Confidence            996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.41  E-value=1.1e-14  Score=151.07  Aligned_cols=198  Identities=23%  Similarity=0.300  Sum_probs=142.2

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEec
Q 014575           47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNL  125 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L  125 (422)
                      .+|.+++++.+.+..+|... .+.+|+.|+..+|++..++..+....+|+.+....+++......   ...++.|+.|+|
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~---le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF---LEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc---ccccceeeeeee
Confidence            55666666666666666333 55666666666666666666666666666664444433333222   456788999999


Q ss_pred             cCCCCCccccccCC--------------------------CCCCCCEEEeeCCCCC-CCCcCCCCCCCcCEEEeeCccCc
Q 014575          126 NNCKSLRILPAGIF--------------------------RLEFLKELDLWGCSKL-KTLPEISSAGNIEVMYLNGTAIE  178 (422)
Q Consensus       126 ~~~~~l~~lp~~i~--------------------------~l~~L~~L~Ls~~~~l-~~~p~~~~l~~L~~L~L~~n~i~  178 (422)
                      ..| .+..+|..+.                          .++.|+.|.+.+|... ..+|.+.++.+|+.|+|++|++.
T Consensus       318 ~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            887 4555554221                          1233555566665544 34567888899999999999999


Q ss_pred             ccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          179 ELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       179 ~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      ++|.+ +.++..|+.|+|+| +.+..+|..+..+..|+.|...+ +.+..+| .+..++.|+.+|++.|.++++
T Consensus       397 ~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~  467 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEV  467 (1081)
T ss_pred             cCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhh
Confidence            99975 68899999999999 56899999999999999999877 5677889 678899999999999998753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=1.3e-13  Score=136.68  Aligned_cols=194  Identities=24%  Similarity=0.321  Sum_probs=163.5

Q ss_pred             EEEecCCCCCCCCCCC---CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccC
Q 014575           51 YLHWYGYPLKSLPSNI---HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNN  127 (422)
Q Consensus        51 ~L~l~~~~l~~lP~~~---~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~  127 (422)
                      .|.+++-.++.+|..-   .+..-+..|++.|++..++.....+..|..+..+.+.+-....+   +.++..|.+|+|+.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~---i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA---ICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh---hhhhhHHHHhhhcc
Confidence            3556666677777543   56667888999999999999888888888887666655444443   78899999999999


Q ss_pred             CCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       128 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      | .+..+|..++.++ |+.|.+++|. ++.+| +++.+..|..|+.+.|.|..+|+.++.+.+|+.|.+.. +.+..+|.
T Consensus       131 N-qlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~  206 (722)
T KOG0532|consen  131 N-QLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPE  206 (722)
T ss_pred             c-hhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCH
Confidence            7 5678888898886 9999999975 66666 79988999999999999999999999999999999999 56888999


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      .+..| .|..||+++ +++..+|-.|.+|+.|++|-|++|.++..|.
T Consensus       207 El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  207 ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             HHhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChH
Confidence            88855 589999985 7889999999999999999999999998875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=4.8e-13  Score=129.77  Aligned_cols=239  Identities=18%  Similarity=0.133  Sum_probs=129.1

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-------CC-CCCCceEEEccCCcc
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-------NI-HPEKLVSIEMPHGNI   81 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-------~~-~~~~L~~L~L~~~~l   81 (422)
                      ...|..+.+|+.|.++++.+....  ...++..+.. ++|++|.+.++.+...|.       .+ .+++|+.|+++++.+
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            356778888999999987643211  1123444444 778999998887663222       23 567899999998888


Q ss_pred             cccc-ccccCC---cchHHHHHhhccCCCCC--CcchhhhcC-CCCcEEeccCCCCCc----cccccCCCCCCCCEEEee
Q 014575           82 QQLW-DDVEHN---GKLKQIISRACNFFTKS--PNHSLTLHL-DKLVNLNLNNCKSLR----ILPAGIFRLEFLKELDLW  150 (422)
Q Consensus        82 ~~l~-~~~~~l---~~L~~l~~~~~~~~~~~--~~~~li~~l-~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls  150 (422)
                      .... ..+..+   ++|+.+....+.+.+..  .....+..+ ++|+.|++++|...+    .++..+..+++|++|+++
T Consensus        94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~  173 (319)
T cd00116          94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA  173 (319)
T ss_pred             ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence            6421 111111   22444422222221100  001113344 667777777765442    233334455667777777


Q ss_pred             CCCCCCC----Cc-CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCCccccccc-----CCCCCc
Q 014575          151 GCSKLKT----LP-EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLKSLPSSLC-----KLNSLN  215 (422)
Q Consensus       151 ~~~~l~~----~p-~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~  215 (422)
                      +|.....    ++ .+..+++|+.|+|++|.++     .++..+..+++|+.|++++|.....-...+.     ..+.|+
T Consensus       174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~  253 (319)
T cd00116         174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL  253 (319)
T ss_pred             CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCce
Confidence            7654421    11 2344456777777777665     2334455666777777777654321111111     135677


Q ss_pred             EEEccCCCCC----CCCCcccCCCCCCCEEeccCcccccc
Q 014575          216 FIYLRWCSSL----KSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       216 ~L~Ls~c~~l----~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      .|++++|...    ..+.+.+..+++|+.+++++|.+..-
T Consensus       254 ~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            7777776543    22334444556677777777766543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=1.7e-12  Score=123.81  Aligned_cols=105  Identities=16%  Similarity=0.162  Sum_probs=67.7

Q ss_pred             CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccccc-ccccCCcchHHHHHhh-ccCCCCCC-------------
Q 014575           47 AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLW-DDVEHNGKLKQIISRA-CNFFTKSP-------------  109 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~l~~~~-~~~~~~~~-------------  109 (422)
                      .+-..|.++.|.++++|+..  .+++|+.|||++|.|+.+- ..++.+.+|..+..+. +++.+...             
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            66788999999999999875  8899999999999998764 3566777776664444 33322211             


Q ss_pred             ---------cchhhhcCCCCcEEeccCCCCCccccc-cCCCCCCCCEEEeeCC
Q 014575          110 ---------NHSLTLHLDKLVNLNLNNCKSLRILPA-GIFRLEFLKELDLWGC  152 (422)
Q Consensus       110 ---------~~~li~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~  152 (422)
                               ....+..+++|..|.+.+|. ...++. ++..+.+++++.+..|
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcC
Confidence                     11115566666666666653 334443 4555666666655544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=5.9e-13  Score=129.18  Aligned_cols=236  Identities=17%  Similarity=0.098  Sum_probs=148.8

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCC-CCCCC-CC---CCceEEEccCCcccc---
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKS-LPSNI-HP---EKLVSIEMPHGNIQQ---   83 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~-lP~~~-~~---~~L~~L~L~~~~l~~---   83 (422)
                      .+...++|+.|+++++...........++..+.. .+|++|+++++++.. .+..+ .+   ++|++|++++|++..   
T Consensus        46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~  125 (319)
T cd00116          46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL  125 (319)
T ss_pred             HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence            3456667888888776532100000112223333 688888888887763 22222 22   348888888887762   


Q ss_pred             --ccccccCC-cchHHHHHhhccCCCCC--CcchhhhcCCCCcEEeccCCCCCc----cccccCCCCCCCCEEEeeCCCC
Q 014575           84 --LWDDVEHN-GKLKQIISRACNFFTKS--PNHSLTLHLDKLVNLNLNNCKSLR----ILPAGIFRLEFLKELDLWGCSK  154 (422)
Q Consensus        84 --l~~~~~~l-~~L~~l~~~~~~~~~~~--~~~~li~~l~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~~~~  154 (422)
                        +...+..+ ++|+.+....+.+....  .....+..+++|++|++++|...+    .++..+..+++|+.|++++|..
T Consensus       126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence              22233444 56666644444433211  223336677899999999987653    3444455678999999999975


Q ss_pred             CCCC----c-CCCCCCCcCEEEeeCccCccc-Cccc-c----CCCCCCEEecCCCCCC----CcccccccCCCCCcEEEc
Q 014575          155 LKTL----P-EISSAGNIEVMYLNGTAIEEL-PSSI-E----CLSRLSALYLDNCKRL----KSLPSSLCKLNSLNFIYL  219 (422)
Q Consensus       155 l~~~----p-~~~~l~~L~~L~L~~n~i~~l-p~~i-~----~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~L  219 (422)
                      ....    + .+..+++|+.|++++|.++.. +..+ .    ..+.|+.|++++|...    ..+...+..+++|+.+++
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l  285 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL  285 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence            4322    2 366788999999999998841 1111 1    2479999999998654    244555667789999999


Q ss_pred             cCCCCCCC----CCcccCCC-CCCCEEeccCccc
Q 014575          220 RWCSSLKS----LPDELGNL-EALDSLIAEGTAI  248 (422)
Q Consensus       220 s~c~~l~~----lp~~~~~l-~~L~~L~l~~n~l  248 (422)
                      ++|.....    +...+... +.|+++++.++++
T Consensus       286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            99876643    44344444 6788888887753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.14  E-value=2e-12  Score=123.28  Aligned_cols=85  Identities=26%  Similarity=0.243  Sum_probs=70.6

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCccc-CccccCCCCC
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEEL-PSSIECLSRL  190 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L  190 (422)
                      |..|++|+.|+|++|+....-+..|..+..++.|.|..|+ +..+.  .|.++..|+.|+|++|+|+.+ |.+|..+..|
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            8889999999999998888888888889999999999975 44444  478888899999999999865 6678888889


Q ss_pred             CEEecCCCC
Q 014575          191 SALYLDNCK  199 (422)
Q Consensus       191 ~~L~L~~~~  199 (422)
                      .+|+|-.|.
T Consensus       349 ~~l~l~~Np  357 (498)
T KOG4237|consen  349 STLNLLSNP  357 (498)
T ss_pred             eeeehccCc
Confidence            999888754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.2e-10  Score=116.75  Aligned_cols=176  Identities=28%  Similarity=0.373  Sum_probs=118.7

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCC--CceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPE--KLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN  124 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~--~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~  124 (422)
                      +.++.|++.++++..+|......  +|++|++++|.+..++..                          ++.++.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~--------------------------~~~l~~L~~L~  169 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP--------------------------LRNLPNLKNLD  169 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh--------------------------hhccccccccc
Confidence            34555555555555555544222  555555555555554311                          56777788888


Q ss_pred             ccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCc
Q 014575          125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKS  203 (422)
Q Consensus       125 L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~  203 (422)
                      +++| .+..+|.....++.|+.|++++|. +..+|. +..+..|++|.+++|.+..++..+..+.++..|.+.+ +.+..
T Consensus       170 l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~  246 (394)
T COG4886         170 LSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLED  246 (394)
T ss_pred             cCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeee
Confidence            8887 455666655578888888888865 455553 4455568888888887777777788888888888776 44555


Q ss_pred             ccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          204 LPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       204 lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +|..++.+++|+.|++++| .+..++. ++.+.+|+.|+++++.+...+.
T Consensus       247 ~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         247 LPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccchhccccccceeccccc-ccccccc-ccccCccCEEeccCccccccch
Confidence            5777778888888888874 4555555 7777888888888887776654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=4.2e-11  Score=110.71  Aligned_cols=137  Identities=19%  Similarity=0.219  Sum_probs=112.3

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEE
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSAL  193 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L  193 (422)
                      +...+.|+.|||++| .+..+..++.-++.++.|++|+|.. ..+..+..+++|+.|||++|.++++-.+-..+.+.++|
T Consensus       280 ~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i-~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  280 ADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRI-RTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             cchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccce-eeehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            556678999999997 5667777776789999999999874 44555888899999999999999888777788899999


Q ss_pred             ecCCCCCCCcccccccCCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEeccCccccccccc
Q 014575          194 YLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAEGTAIREVYFF  254 (422)
Q Consensus       194 ~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~~lp~f  254 (422)
                      .|++| .+..+.. ++++-+|..||+++|+.-. .-...+++++.|+.+.|.+|.+..+|+.
T Consensus       358 ~La~N-~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  358 KLAQN-KIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             ehhhh-hHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            99994 5666654 7888899999999975432 1234689999999999999999988874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=4.4e-10  Score=112.73  Aligned_cols=186  Identities=27%  Similarity=0.323  Sum_probs=150.8

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-C-CeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccccc
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-A-EVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDD   87 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~-~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~   87 (422)
                      .......++++.|.+.+|..       ..++..... . +|+.|++++|.+..+|... .+++|+.|++++|++..++..
T Consensus       109 ~~~~~~~~~l~~L~l~~n~i-------~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         109 ISELLELTNLTSLDLDNNNI-------TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             chhhhcccceeEEecCCccc-------ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh
Confidence            34455667889999988763       235555555 4 8999999999999998555 899999999999999988654


Q ss_pred             ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCc
Q 014575           88 VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNI  167 (422)
Q Consensus        88 ~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L  167 (422)
                      .                          +.++.|+.|++++| .+..+|..+..+..|++|.+++|.....+..+..+.++
T Consensus       182 ~--------------------------~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l  234 (394)
T COG4886         182 L--------------------------SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL  234 (394)
T ss_pred             h--------------------------hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccc
Confidence            2                          25667889999997 57788876656677999999998766666678888899


Q ss_pred             CEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCccc
Q 014575          168 EVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDEL  232 (422)
Q Consensus       168 ~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~  232 (422)
                      ..|.+.+|.+..++..++.++.|++|++++ +.+..++. ++.+.+|+.|+++++.....+|...
T Consensus       235 ~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         235 SGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cccccCCceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCccccccchhhh
Confidence            999999999999999999999999999999 45677776 8899999999999987777666554

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=2.8e-09  Score=112.74  Aligned_cols=106  Identities=26%  Similarity=0.315  Sum_probs=90.2

Q ss_pred             CCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEcc
Q 014575          143 FLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR  220 (422)
Q Consensus       143 ~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls  220 (422)
                      .++.|+|++|...+.+| .++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+..+.+|+.++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47788999988877787 5888889999999999987 788889999999999999988888999999999999999999


Q ss_pred             CCCCCCCCCcccCCC-CCCCEEeccCccc
Q 014575          221 WCSSLKSLPDELGNL-EALDSLIAEGTAI  248 (422)
Q Consensus       221 ~c~~l~~lp~~~~~l-~~L~~L~l~~n~l  248 (422)
                      +|+..+.+|..++.+ .++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            998888999887653 4567788888753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=1.7e-09  Score=95.19  Aligned_cols=123  Identities=23%  Similarity=0.288  Sum_probs=43.1

Q ss_pred             hcCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccc-cCCCCCCE
Q 014575          115 LHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI-ECLSRLSA  192 (422)
Q Consensus       115 ~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~  192 (422)
                      .+..+++.|+|.+|.. ..+. .+. .+.+|+.|++++|. ++.++.+..++.|++|++++|.|+.++..+ ..+++|+.
T Consensus        16 ~n~~~~~~L~L~~n~I-~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQI-STIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-cccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            3455678888888743 3333 254 57788888888875 556677777888888888888888887655 46788888


Q ss_pred             EecCCCCCCCccc--ccccCCCCCcEEEccCCCCCCCCCc----ccCCCCCCCEEe
Q 014575          193 LYLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEALDSLI  242 (422)
Q Consensus       193 L~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l~~lp~----~~~~l~~L~~L~  242 (422)
                      |++++|+ +..+-  ..+..+++|+.|++.+|+.... +.    .+..+++|+.||
T Consensus        93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             EECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            8888854 33222  2355677777788777665432 22    234566777665

>PLN03150 hypothetical protein; Provisional

Probab=98.85  E-value=4.7e-09  Score=111.04  Aligned_cols=84  Identities=26%  Similarity=0.400  Sum_probs=72.0

Q ss_pred             CcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575          166 NIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       166 ~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~  244 (422)
                      .++.|+|++|.++ .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|+..+.+|+.++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3778888888887 778888888888888888888778888888888888888888888888888888888888888888


Q ss_pred             Ccccc
Q 014575          245 GTAIR  249 (422)
Q Consensus       245 ~n~l~  249 (422)
                      +|.++
T Consensus       499 ~N~l~  503 (623)
T PLN03150        499 GNSLS  503 (623)
T ss_pred             CCccc
Confidence            88876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.80  E-value=2.1e-10  Score=114.14  Aligned_cols=179  Identities=18%  Similarity=0.206  Sum_probs=141.4

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEec
Q 014575           47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNL  125 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L  125 (422)
                      ..-...+++.|.+..+|..+ .+..|+.+.+.+|.|..+++.+..+..|..+....+.+..+...   +-.|+ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~---lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG---LCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh---hhcCc-ceeEEE
Confidence            55567788889999999888 56778888899999999988888888888875554444333222   33343 888888


Q ss_pred             cCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc
Q 014575          126 NNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       126 ~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      ++| +++.+|..|+.+..|..||.+.|......+.++++.+|+.|.+..|++..+|..+..| .|..||++. +.+..||
T Consensus       151 sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iP  227 (722)
T KOG0532|consen  151 SNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLP  227 (722)
T ss_pred             ecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecc
Confidence            886 6889999898889999999999875555557899999999999999999999888754 588999997 5688899


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCCcccC
Q 014575          206 SSLCKLNSLNFIYLRWCSSLKSLPDELG  233 (422)
Q Consensus       206 ~~l~~l~~L~~L~Ls~c~~l~~lp~~~~  233 (422)
                      ..|.+|+.|++|-|.+ +-+.+=|..+.
T Consensus       228 v~fr~m~~Lq~l~Len-NPLqSPPAqIC  254 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLEN-NPLQSPPAQIC  254 (722)
T ss_pred             hhhhhhhhheeeeecc-CCCCCChHHHH
Confidence            9999999999999986 55676666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.75  E-value=7.2e-09  Score=91.26  Aligned_cols=119  Identities=27%  Similarity=0.363  Sum_probs=44.8

Q ss_pred             CCccccccCCCCCCCCEEEeeCCCCCCCCcCCC-CCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccc
Q 014575          130 SLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSL  208 (422)
Q Consensus       130 ~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l  208 (422)
                      .+...|. +.+..+++.|+|.+|. +..+..++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..+++.+
T Consensus         8 ~i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l   83 (175)
T PF14580_consen    8 MIEQIAQ-YNNPVKLRELNLRGNQ-ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGL   83 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHH
T ss_pred             ccccccc-cccccccccccccccc-cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccch
Confidence            3445555 4477789999999986 44456666 5789999999999999987 5778999999999995 566676545


Q ss_pred             -cCCCCCcEEEccCCCCCCCCC--cccCCCCCCCEEeccCcccccccc
Q 014575          209 -CKLNSLNFIYLRWCSSLKSLP--DELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       209 -~~l~~L~~L~Ls~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                       ..+++|+.|++++|+. ..+-  ..+..+++|+.|++.+|++...+.
T Consensus        84 ~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~  130 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKN  130 (175)
T ss_dssp             HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred             HHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhh
Confidence             3689999999998654 3332  345678999999999999987665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=7.9e-10  Score=107.02  Aligned_cols=199  Identities=15%  Similarity=0.143  Sum_probs=93.3

Q ss_pred             CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCccccc---cccccCCcchHHHHHhhccC--CCCCCcchhhhcCC
Q 014575           47 AEVRYLHWYGYPLKSLPS--NI-HPEKLVSIEMPHGNIQQL---WDDVEHNGKLKQIISRACNF--FTKSPNHSLTLHLD  118 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~--~~-~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~l~~~~~~~--~~~~~~~~li~~l~  118 (422)
                      .+||...++++++...+.  .. .+++++.|||++|-+...   ..-..++++|+.|....+.+  +..+..   -..++
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~  197 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLS  197 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhhhh
Confidence            455555555555555443  11 455555555555544331   11224455555542222111  111111   12455


Q ss_pred             CCcEEeccCCCCCc-cccccCCCCCCCCEEEeeCCCCCCCC-cCCCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEe
Q 014575          119 KLVNLNLNNCKSLR-ILPAGIFRLEFLKELDLWGCSKLKTL-PEISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALY  194 (422)
Q Consensus       119 ~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~~~~l~~~-p~~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~  194 (422)
                      .|+.|.|++|...- .+-..+..+++|+.|+|.+|...... -+..-+..|+.|+|++|++-.++  ..++.++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            56666666665431 11122234566666666666322111 12223346666666666666555  4456666666666


Q ss_pred             cCCCCCCC-ccccc-----ccCCCCCcEEEccCCCCCCCCC--cccCCCCCCCEEeccCcccc
Q 014575          195 LDNCKRLK-SLPSS-----LCKLNSLNFIYLRWCSSLKSLP--DELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       195 L~~~~~l~-~lp~~-----l~~l~~L~~L~Ls~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~  249 (422)
                      ++.|.... .+|+.     ...+++|++|++..|+.. ..+  ..+..+++|+.|.+.+|.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            66643221 12221     234566666666665431 111  12334455555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=2.6e-09  Score=115.95  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLW   85 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~   85 (422)
                      .++.+.|..|+.|++|++++|.-.      ..+|..++. -+||||++++..++.+|..+ +++.|.+|++.++.-....
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l------~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSL------SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCcc------CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence            345555666666666666654311      236666665 66666666666666666666 6666666666655433322


Q ss_pred             ccc-cCCcchHHH
Q 014575           86 DDV-EHNGKLKQI   97 (422)
Q Consensus        86 ~~~-~~l~~L~~l   97 (422)
                      .++ ..+.+|+++
T Consensus       635 ~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  635 PGILLELQSLRVL  647 (889)
T ss_pred             cchhhhcccccEE
Confidence            222 225555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=3.8e-09  Score=102.36  Aligned_cols=200  Identities=17%  Similarity=0.188  Sum_probs=135.2

Q ss_pred             hCCCCCceEEEecCCCCCCCceeEEccC---CCCC-CCeeEEEecCCCCCCCCC---CC-CCCCceEEEccCCccccccc
Q 014575           15 TKMCKLRFLKFYNSKDDGENKCKVSYLV---GPGF-AEVRYLHWYGYPLKSLPS---NI-HPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus        15 ~~m~~L~~L~l~~~~~~~~~~~~~~lp~---~l~~-~~Lr~L~l~~~~l~~lP~---~~-~~~~L~~L~L~~~~l~~l~~   86 (422)
                      +++++||...|.+..        +..+.   ..+. +++|.|++++|-+...-.   .. ++++|+.|+|+.|++.-.|.
T Consensus       118 sn~kkL~~IsLdn~~--------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR--------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             hhHHhhhheeecCcc--------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            466788888888754        32332   2222 899999999986554322   11 67899999999999987776


Q ss_pred             cc--cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCC--cCCC
Q 014575           87 DV--EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTL--PEIS  162 (422)
Q Consensus        87 ~~--~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--p~~~  162 (422)
                      ..  ..+..||.|....+.+.. -........++.|+.|+|+.|.....--.+...+..|+.|||++|+.....  +..+
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~  268 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG  268 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence            43  345666666544444431 122333667889999999998644433333446888999999998765433  4678


Q ss_pred             CCCCcCEEEeeCccCccc--Ccc-----ccCCCCCCEEecCCCCCCCcccc--cccCCCCCcEEEccCCCC
Q 014575          163 SAGNIEVMYLNGTAIEEL--PSS-----IECLSRLSALYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       163 ~l~~L~~L~L~~n~i~~l--p~~-----i~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~  224 (422)
                      .++.|+.|+++.|+|+++  |+.     ...+++|++|++..|+ +...+.  .+..+.+|+.|.+..+..
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccc
Confidence            899999999999999844  543     3567899999999965 433332  355667777777665443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.56  E-value=6.5e-09  Score=96.38  Aligned_cols=127  Identities=24%  Similarity=0.240  Sum_probs=91.6

Q ss_pred             CCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEE
Q 014575           69 EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELD  148 (422)
Q Consensus        69 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~  148 (422)
                      +.|+++||++|.|+.+.+++                          .-+++++.|+++.|... .+.+ +..+++|+.||
T Consensus       284 q~LtelDLS~N~I~~iDESv--------------------------KL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LD  335 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESV--------------------------KLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLD  335 (490)
T ss_pred             hhhhhccccccchhhhhhhh--------------------------hhccceeEEecccccee-eehh-hhhcccceEee
Confidence            46899999999999887664                          34567788888887544 3333 77888888899


Q ss_pred             eeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc--ccccCCCCCcEEEccCCCCC
Q 014575          149 LWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSL  225 (422)
Q Consensus       149 Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l  225 (422)
                      ||+|. +..+.. -.++.|+++|.|++|.|+.+. .++.+-+|..|++++|+ +..+-  ..|++++.|+.+.|.+|+..
T Consensus       336 LS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  336 LSGNL-LAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             cccch-hHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence            98875 333332 235668888888888888775 46777888888888854 33332  34788888888888886554


Q ss_pred             C
Q 014575          226 K  226 (422)
Q Consensus       226 ~  226 (422)
                      +
T Consensus       413 ~  413 (490)
T KOG1259|consen  413 G  413 (490)
T ss_pred             c
Confidence            3

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.53  E-value=6.4e-08  Score=105.20  Aligned_cols=80  Identities=38%  Similarity=0.524  Sum_probs=39.5

Q ss_pred             CCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEc
Q 014575          141 LEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYL  219 (422)
Q Consensus       141 l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L  219 (422)
                      ++.|+.|||++|..+..+| .|+++-+|++|+|+++.|+.+|..+++|..|.+|++..+..+..+|.....+++|++|.+
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence            4444444444444444444 244444555555555555555555555555555555554444444444444555555554


Q ss_pred             c
Q 014575          220 R  220 (422)
Q Consensus       220 s  220 (422)
                      .
T Consensus       650 ~  650 (889)
T KOG4658|consen  650 P  650 (889)
T ss_pred             e
Confidence            3

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.52  E-value=2.9e-07  Score=90.83  Aligned_cols=118  Identities=28%  Similarity=0.454  Sum_probs=70.6

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCc-cCcccCccccCCCCCC
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGT-AIEELPSSIECLSRLS  191 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~  191 (422)
                      +..+.+++.|++++| .+..+|.   -..+|+.|.+++|..+..+|+ +.  ++|+.|++++| .+..+|.+      |+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cc
Confidence            334566777777777 5666662   234677777777777777774 43  37777777776 66666654      44


Q ss_pred             EEecCC--CCCCCcccccccCC------------------CCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCc
Q 014575          192 ALYLDN--CKRLKSLPSSLCKL------------------NSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGT  246 (422)
Q Consensus       192 ~L~L~~--~~~l~~lp~~l~~l------------------~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n  246 (422)
                      .|++.+  +..++.+|.++..|                  ++|+.|++++|... .+|..+.  .+|+.|.++.+
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            444443  22345555544322                  36777777776644 2443333  46777777655

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.47  E-value=4.7e-07  Score=89.36  Aligned_cols=131  Identities=21%  Similarity=0.310  Sum_probs=78.8

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCC-CceEEEccCC-ccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPE-KLVSIEMPHG-NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN  124 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~-~L~~L~L~~~-~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~  124 (422)
                      .+++.|++++|.++++|   .++ +|++|.++++ +++.++..                          +  .++|++|+
T Consensus        52 ~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~--------------------------L--P~nLe~L~  100 (426)
T PRK15386         52 RASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGS--------------------------I--PEGLEKLT  100 (426)
T ss_pred             cCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCch--------------------------h--hhhhhheE
Confidence            66778888888777877   475 4777777653 33333211                          1  13578888


Q ss_pred             ccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCcc-C--cccCccccCCCCCCEEecCCCCCC
Q 014575          125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA-I--EELPSSIECLSRLSALYLDNCKRL  201 (422)
Q Consensus       125 L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~-i--~~lp~~i~~l~~L~~L~L~~~~~l  201 (422)
                      +++|..+..+|.      +|+.|+++++. ...++.+..  +|+.|.+.+++ .  ..+|..  -.++|++|++++|...
T Consensus       101 Ls~Cs~L~sLP~------sLe~L~L~~n~-~~~L~~LPs--sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        101 VCHCPEISGLPE------SVRSLEIKGSA-TDSIKNVPN--GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI  169 (426)
T ss_pred             ccCccccccccc------ccceEEeCCCC-CcccccCcc--hHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence            888876766665      35666665432 223333333  67777765432 1  122211  1257999999998755


Q ss_pred             CcccccccCCCCCcEEEccCC
Q 014575          202 KSLPSSLCKLNSLNFIYLRWC  222 (422)
Q Consensus       202 ~~lp~~l~~l~~L~~L~Ls~c  222 (422)
                       .+|..+.  .+|+.|+++.|
T Consensus       170 -~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        170 -ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             -cCccccc--ccCcEEEeccc
Confidence             3554432  58999998764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.45  E-value=1.8e-07  Score=67.58  Aligned_cols=59  Identities=25%  Similarity=0.380  Sum_probs=36.1

Q ss_pred             CCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCC
Q 014575          165 GNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCS  223 (422)
Q Consensus       165 ~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~  223 (422)
                      ++|++|++++|.|+.+|. .+..+++|++|++++|+...--|..+.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            356667777777776664 45666667777777654433333456666666666666654

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.37  E-value=3.9e-08  Score=93.04  Aligned_cols=213  Identities=18%  Similarity=0.132  Sum_probs=124.0

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCC----CCCCCCCC--------CCCCceEEEccCC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYP----LKSLPSNI--------HPEKLVSIEMPHG   79 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~----l~~lP~~~--------~~~~L~~L~L~~~   79 (422)
                      ....|..++.|+|++|.++-..  .-.+...+.. ++||..+|++--    ...+|...        ..++|+.|+||.|
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EA--a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEA--ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HhcccCceEEEeccCCchhHHH--HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            5678889999999998754221  0013344555 789999998763    23444422        3458999999999


Q ss_pred             ccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc-------------ccccCCCCCCCCE
Q 014575           80 NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI-------------LPAGIFRLEFLKE  146 (422)
Q Consensus        80 ~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~-------------lp~~i~~l~~L~~  146 (422)
                      -+-.  .++..   |.                .++..+..|++|.|.+|..-..             ...-+..-+.|++
T Consensus       103 A~G~--~g~~~---l~----------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv  161 (382)
T KOG1909|consen  103 AFGP--KGIRG---LE----------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRV  161 (382)
T ss_pred             ccCc--cchHH---HH----------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEE
Confidence            7742  12211   11                1255566677777776643211             1112334566777


Q ss_pred             EEeeCCCCCCCCc------CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCC----cccccccCC
Q 014575          147 LDLWGCSKLKTLP------EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLK----SLPSSLCKL  211 (422)
Q Consensus       147 L~Ls~~~~l~~~p------~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l  211 (422)
                      +....|. +...+      .+...+.|+.+.+..|.|.     -+-..+..+++|+.|+|.+|....    .+-..+..+
T Consensus       162 ~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  162 FICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             EEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            7777754 44444      1445567777777777665     223456677777777777765432    223334556


Q ss_pred             CCCcEEEccCCCCCCCCCcc----c-CCCCCCCEEeccCcccc
Q 014575          212 NSLNFIYLRWCSSLKSLPDE----L-GNLEALDSLIAEGTAIR  249 (422)
Q Consensus       212 ~~L~~L~Ls~c~~l~~lp~~----~-~~l~~L~~L~l~~n~l~  249 (422)
                      ++|+.|++++|.....--..    + ...++|+.|.+.+|.|+
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            67777777777654322111    1 22466777777777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.26  E-value=7.6e-07  Score=64.29  Aligned_cols=60  Identities=27%  Similarity=0.342  Sum_probs=51.2

Q ss_pred             CCCCEEecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575          188 SRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       188 ~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l  248 (422)
                      ++|++|++++| .+..+| ..+.++++|+.|++++|+....-|..+..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            47999999997 566777 4688999999999998777666667889999999999999975

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.18  E-value=1.3e-07  Score=89.52  Aligned_cols=66  Identities=12%  Similarity=0.049  Sum_probs=33.5

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCC----C-CCeeEEEecCCCCCCCCC--------------CC-CCCCc
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPG----F-AEVRYLHWYGYPLKSLPS--------------NI-HPEKL   71 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~----~-~~Lr~L~l~~~~l~~lP~--------------~~-~~~~L   71 (422)
                      +|+.+.++|++|+|+.|.++..      .++++.    . ..|+.|.+.+|.+...-.              .. ..++|
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L  159 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPK------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL  159 (382)
T ss_pred             HHHhcCCceeEeeccccccCcc------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence            3555556666666666654322      222222    1 566666666665432110              11 34566


Q ss_pred             eEEEccCCcccc
Q 014575           72 VSIEMPHGNIQQ   83 (422)
Q Consensus        72 ~~L~L~~~~l~~   83 (422)
                      +++....|++..
T Consensus       160 rv~i~~rNrlen  171 (382)
T KOG1909|consen  160 RVFICGRNRLEN  171 (382)
T ss_pred             EEEEeecccccc
Confidence            666666666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.15  E-value=3.2e-07  Score=92.68  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             CcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          214 LNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       214 L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      |+.++++++ ....+++.+..+..+..|++.+|.+..+
T Consensus       234 L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  234 LRELYLSGN-RISRSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             HHHHhcccC-ccccccccccccccccccchhhcccccc
Confidence            566666663 3333434455566666677666665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=7.1e-08  Score=89.53  Aligned_cols=171  Identities=22%  Similarity=0.249  Sum_probs=110.7

Q ss_pred             CceEEEccCCcccc--ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc--ccCCCCCCCC
Q 014575           70 KLVSIEMPHGNIQQ--LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP--AGIFRLEFLK  145 (422)
Q Consensus        70 ~L~~L~L~~~~l~~--l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp--~~i~~l~~L~  145 (422)
                      .|+.|||+.+.|+.  +..-...+.+||.++.....+.|...  +-++.-..|+.|+|+.|.......  -.+.+++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~--~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV--NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH--HHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            48888888888763  33334556666666555444433222  226677788888888887665533  2244678888


Q ss_pred             EEEeeCCCCCCCCc-----CCCCCCCcCEEEeeCcc----CcccCccccCCCCCCEEecCCCCCCCc-ccccccCCCCCc
Q 014575          146 ELDLWGCSKLKTLP-----EISSAGNIEVMYLNGTA----IEELPSSIECLSRLSALYLDNCKRLKS-LPSSLCKLNSLN  215 (422)
Q Consensus       146 ~L~Ls~~~~l~~~p-----~~~~l~~L~~L~L~~n~----i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~  215 (422)
                      .|+++.|......-     .++.  +|..|+|+|+.    .+.+..-...+++|..|||++|..+.. .-..+.+++.|+
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise--~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISE--TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhch--hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            88888886554332     2455  78888888863    224444456788888888888766553 223366788888


Q ss_pred             EEEccCCCCCCCCCc---ccCCCCCCCEEeccCc
Q 014575          216 FIYLRWCSSLKSLPD---ELGNLEALDSLIAEGT  246 (422)
Q Consensus       216 ~L~Ls~c~~l~~lp~---~~~~l~~L~~L~l~~n  246 (422)
                      +|.++.|-.  .+|+   .+...++|.+|++.|+
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            888888743  3343   2456678888887775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.03  E-value=5.4e-07  Score=91.07  Aligned_cols=132  Identities=23%  Similarity=0.233  Sum_probs=86.0

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCE
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IECLSRLSA  192 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~  192 (422)
                      +..+++|++|++++|. ++.+.. +..++.|+.|++++|. +..++.+..+++|+.+++++|.++.+... ...+.+|+.
T Consensus       114 l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEE  190 (414)
T ss_pred             hhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence            3456778888888874 444443 5677778888888865 66677777788888888888888877664 577888888


Q ss_pred             EecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC--CCCEEeccCccccccc
Q 014575          193 LYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE--ALDSLIAEGTAIREVY  252 (422)
Q Consensus       193 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~--~L~~L~l~~n~l~~lp  252 (422)
                      +++.+|.. ..+. .+..+..+..+++..|.....-+  +..+.  .|+.+++++|++..++
T Consensus       191 l~l~~n~i-~~i~-~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~  248 (414)
T KOG0531|consen  191 LDLGGNSI-REIE-GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP  248 (414)
T ss_pred             HhccCCch-hccc-chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc
Confidence            88888543 2222 23334445555665543322211  11222  3789999999888663

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=1e-07  Score=97.73  Aligned_cols=172  Identities=18%  Similarity=0.159  Sum_probs=84.8

Q ss_pred             CCCCceEEEccCCccccccccccCC-------------cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc
Q 014575           67 HPEKLVSIEMPHGNIQQLWDDVEHN-------------GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI  133 (422)
Q Consensus        67 ~~~~L~~L~L~~~~l~~l~~~~~~l-------------~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~  133 (422)
                      ..+.|+.|.++++.|... .|++.+             ..|+++  ......+....+.    ..+|...+.+.| .+..
T Consensus       107 pF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v--~ascggd~~ns~~----Wn~L~~a~fsyN-~L~~  178 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHV--FASCGGDISNSPV----WNKLATASFSYN-RLVL  178 (1096)
T ss_pred             cccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHH--HHHhccccccchh----hhhHhhhhcchh-hHHh
Confidence            667899999998887653 222221             222222  1111122222221    123444444443 3444


Q ss_pred             ccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCC
Q 014575          134 LPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLN  212 (422)
Q Consensus       134 lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~  212 (422)
                      +..++.-++.|+.|+|+.|.... ...+..++.|++|||+.|.+..+|.- ...+ +|..|.+++| -++++-. +.+|.
T Consensus       179 mD~SLqll~ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g-ie~Lk  254 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG-IENLK  254 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhh-hHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh-HHhhh
Confidence            44445455666666666654322 22555566666666666666666542 1222 3666666663 3444432 55666


Q ss_pred             CCcEEEccCCCCCCCC-CcccCCCCCCCEEeccCccccc
Q 014575          213 SLNFIYLRWCSSLKSL-PDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       213 ~L~~L~Ls~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      +|+.||+++|-..+-- -.-++.+..|+.|+|.||.+--
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            6666666664322210 0112344556666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.91  E-value=4.7e-07  Score=93.03  Aligned_cols=168  Identities=24%  Similarity=0.272  Sum_probs=107.9

Q ss_pred             CCeeEEEecCCCCCCCCCCCCC-CCceEEEccCCcccccc-------ccccC---CcchHHHHHhhccCCCCCCcchhhh
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHP-EKLVSIEMPHGNIQQLW-------DDVEH---NGKLKQIISRACNFFTKSPNHSLTL  115 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~-~~L~~L~L~~~~l~~l~-------~~~~~---l~~L~~l~~~~~~~~~~~~~~~li~  115 (422)
                      ..||.|.+.++++..+-.-..+ ..|+.| |.++.+..+-       .++.+   -.+|+.++...+.+.   .....+.
T Consensus       109 ~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~---~mD~SLq  184 (1096)
T KOG1859|consen  109 RSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV---LMDESLQ  184 (1096)
T ss_pred             cceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH---hHHHHHH
Confidence            8999999999998774322111 122322 2333332211       11111   122333322222221   1222256


Q ss_pred             cCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCC--CCCCcCEEEeeCccCcccCccccCCCCCCEE
Q 014575          116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS--SAGNIEVMYLNGTAIEELPSSIECLSRLSAL  193 (422)
Q Consensus       116 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~--~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L  193 (422)
                      -++.|+.|+|++|+....-  .+..++.|++|||++|. ++.+|.++  .+ .|+.|.|.+|.++++- .|.+|.+|+.|
T Consensus       185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~L  259 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGL  259 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhhh-hHHhhhhhhcc
Confidence            6788999999999766553  57789999999999975 77778543  33 4999999999999886 57899999999


Q ss_pred             ecCCCCCCCcccc--cccCCCCCcEEEccCCCC
Q 014575          194 YLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       194 ~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~  224 (422)
                      |+++|- +....+  -+..|..|+.|+|.||+.
T Consensus       260 DlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  260 DLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             chhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            999953 332221  155678899999999754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=6.1e-06  Score=87.80  Aligned_cols=131  Identities=22%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             CCCCcEEeccCCCCC-ccccccCC-CCCCCCEEEeeCCCCCC-CCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCE
Q 014575          117 LDKLVNLNLNNCKSL-RILPAGIF-RLEFLKELDLWGCSKLK-TLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSA  192 (422)
Q Consensus       117 l~~L~~L~L~~~~~l-~~lp~~i~-~l~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~  192 (422)
                      -.+|++|+++|.... ...|..++ -+|+|++|.++|=.... .+- -..++++|..||+++++++.+ ..+++|++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            357999999996543 23344454 48999999999943221 122 256788999999999999999 78999999999


Q ss_pred             EecCCCCCCC-cccccccCCCCCcEEEccCCCCCCCCCcc-------cCCCCCCCEEeccCcccc
Q 014575          193 LYLDNCKRLK-SLPSSLCKLNSLNFIYLRWCSSLKSLPDE-------LGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       193 L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~-------~~~l~~L~~L~l~~n~l~  249 (422)
                      |.+.+-.... ..-..+..|++|+.||+|.-... ..+..       -..|++|+.||.+++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9999844332 11123678999999999974332 22211       134789999999998764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.8e-05  Score=52.97  Aligned_cols=40  Identities=28%  Similarity=0.479  Sum_probs=26.6

Q ss_pred             CCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc
Q 014575          165 GNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       165 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      ++|++|++++|+|+++|+.++.+++|+.|++++|+ +..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            36777777777777777777777777777777753 44443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.80  E-value=1.2e-06  Score=72.75  Aligned_cols=86  Identities=21%  Similarity=0.346  Sum_probs=44.5

Q ss_pred             CCcCEEEeeCccCcccCccccC-CCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575          165 GNIEVMYLNGTAIEELPSSIEC-LSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA  243 (422)
Q Consensus       165 ~~L~~L~L~~n~i~~lp~~i~~-l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l  243 (422)
                      ..|...+|++|.+..+|+.+.. .+-++.|+|++ +.+..+|+.+..++.|+.|+++.| .+...|+.+..+.+|..|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence            3444455555555555554432 23455555555 345555555555555555555552 33444555555555555555


Q ss_pred             cCccccccc
Q 014575          244 EGTAIREVY  252 (422)
Q Consensus       244 ~~n~l~~lp  252 (422)
                      .+|.+.++|
T Consensus       131 ~~na~~eid  139 (177)
T KOG4579|consen  131 PENARAEID  139 (177)
T ss_pred             CCCccccCc
Confidence            555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.69  E-value=4.4e-05  Score=51.10  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=25.5

Q ss_pred             CCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          212 NSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       212 ~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      ++|++|++++| .+..+|..+++|++|+.|++++|+++.+|.
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            35667777764 344566666777777777777777766654

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.34  E-value=5.2e-06  Score=68.96  Aligned_cols=62  Identities=18%  Similarity=0.150  Sum_probs=27.5

Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCc
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS  182 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~  182 (422)
                      ++.|+|++| .+..+|..+.-++.|+.|+++.|......-.+..+.+|-+|+..+|++.++|.
T Consensus        79 ~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen   79 ATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             hhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            344444443 23344444444555555555554432222233334444555555555544443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.29  E-value=0.00055  Score=60.73  Aligned_cols=101  Identities=23%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             CCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCC-CCCcCEEEeeCccCcccCc--cccCCCCCCEEe
Q 014575          118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISS-AGNIEVMYLNGTAIEELPS--SIECLSRLSALY  194 (422)
Q Consensus       118 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~-l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~  194 (422)
                      .....+||++|. +..++. +..++.|.+|.|..|.+...-|.+.. +++|+.|.|.+|+|.++-.  .+..+++|++|.
T Consensus        42 d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            345566676653 334433 55677777777777776666665443 3467777777777765532  244566777777


Q ss_pred             cCCCCCCCcccc----cccCCCCCcEEEccC
Q 014575          195 LDNCKRLKSLPS----SLCKLNSLNFIYLRW  221 (422)
Q Consensus       195 L~~~~~l~~lp~----~l~~l~~L~~L~Ls~  221 (422)
                      +-+|.... -+.    -+..+++|+.||+++
T Consensus       120 ll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence            77754221 111    156677788887765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.00015  Score=67.87  Aligned_cols=36  Identities=14%  Similarity=0.041  Sum_probs=18.8

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCc------ccCCCCCCCEEec
Q 014575          208 LCKLNSLNFIYLRWCSSLKSLPD------ELGNLEALDSLIA  243 (422)
Q Consensus       208 l~~l~~L~~L~Ls~c~~l~~lp~------~~~~l~~L~~L~l  243 (422)
                      +.++++|..|.+++++....+-.      .++++++++.|+=
T Consensus       245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            44555555555555544433321      2456667776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=1.9e-05  Score=73.68  Aligned_cols=134  Identities=20%  Similarity=0.162  Sum_probs=92.0

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc---CCCCCCCcCEEEeeCccCc-c-cCccccC-C
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP---EISSAGNIEVMYLNGTAIE-E-LPSSIEC-L  187 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p---~~~~l~~L~~L~L~~n~i~-~-lp~~i~~-l  187 (422)
                      +..+.+|+.|.|.|+.....+-..|..-..|+.|++++|+..+...   -+..++.|..|+|+-+.+. + +...+.+ -
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            6777888888888877666666677778888899999888777665   2677888888888887665 1 1111111 2


Q ss_pred             CCCCEEecCCCCCC---CcccccccCCCCCcEEEccCCCCCCC-CCcccCCCCCCCEEeccCcc
Q 014575          188 SRLSALYLDNCKRL---KSLPSSLCKLNSLNFIYLRWCSSLKS-LPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       188 ~~L~~L~L~~~~~l---~~lp~~l~~l~~L~~L~Ls~c~~l~~-lp~~~~~l~~L~~L~l~~n~  247 (422)
                      ..|+.|+++||...   ..+..-..++++|..|||++|..+.. .-..+-.++.|++|.++.|.
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            46888888887432   12222245788899999998877654 11234567788888888774

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.02  E-value=0.0013  Score=58.47  Aligned_cols=106  Identities=20%  Similarity=0.265  Sum_probs=79.6

Q ss_pred             CCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCcccc-CCCCCCEEecCCCCCCCcccc--cccCCCCCcEE
Q 014575          141 LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIE-CLSRLSALYLDNCKRLKSLPS--SLCKLNSLNFI  217 (422)
Q Consensus       141 l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L  217 (422)
                      +.+...+||++|. +..++.+..++.|.+|.|++|.|+.+-+.+. .+++|..|.|.+|+ +..+-+  -+..++.|++|
T Consensus        41 ~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence            4567789999975 7778888999999999999999999877664 46779999999964 443322  15678899999


Q ss_pred             EccCCCCCCCCC---cccCCCCCCCEEeccCccc
Q 014575          218 YLRWCSSLKSLP---DELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       218 ~Ls~c~~l~~lp---~~~~~l~~L~~L~l~~n~l  248 (422)
                      .+-+|+....--   -.+..+++|+.||.+.-..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999876543211   1345678999999876443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.00022  Score=66.70  Aligned_cols=91  Identities=20%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CcchhhhcCCCCcEEeccCCCCCc--cccccCCCCCCCCEEEeeCCCCCCCCcCC-CCCCCcCEEEeeCccCc--ccCcc
Q 014575          109 PNHSLTLHLDKLVNLNLNNCKSLR--ILPAGIFRLEFLKELDLWGCSKLKTLPEI-SSAGNIEVMYLNGTAIE--ELPSS  183 (422)
Q Consensus       109 ~~~~li~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~-~~l~~L~~L~L~~n~i~--~lp~~  183 (422)
                      ....+-...+.++.|||.+|....  .+..-+.+++.|++|+++.|+....+..+ ..+.+|+.|-|.|+.+.  ..-+.
T Consensus        62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~  141 (418)
T KOG2982|consen   62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS  141 (418)
T ss_pred             hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh
Confidence            333334456778889999885432  23333457889999999998766555444 35668999999998775  66677


Q ss_pred             ccCCCCCCEEecCCCC
Q 014575          184 IECLSRLSALYLDNCK  199 (422)
Q Consensus       184 i~~l~~L~~L~L~~~~  199 (422)
                      +..++.++.|.++.|+
T Consensus       142 l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNS  157 (418)
T ss_pred             hhcchhhhhhhhccch
Confidence            7888888888888863

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.81  E-value=0.00075  Score=72.09  Aligned_cols=108  Identities=19%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             hhcCCCCcEEeccCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccC--ccccCCCCC
Q 014575          114 TLHLDKLVNLNLNNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSRL  190 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L  190 (422)
                      -..||.|+.|.+++-... ..+..-..++++|..||+|+++ ++.+..++.+++|+.|.+.+=.+..-.  ..+.+|++|
T Consensus       144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            446788888888774322 1223333467888888888865 555567788888888877776665433  245678888


Q ss_pred             CEEecCCCCCCCcccc-------cccCCCCCcEEEccCCC
Q 014575          191 SALYLDNCKRLKSLPS-------SLCKLNSLNFIYLRWCS  223 (422)
Q Consensus       191 ~~L~L~~~~~l~~lp~-------~l~~l~~L~~L~Ls~c~  223 (422)
                      +.||+|.-+.. ..+.       .-..|+.|+.||.|+..
T Consensus       223 ~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  223 RVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             Ceeeccccccc-cchHHHHHHHHhcccCccccEEecCCcc
Confidence            88888874332 2221       12347788888887643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0016  Score=59.98  Aligned_cols=85  Identities=22%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCc--cCc-ccCccccCCCCCCEEecCCCCCC--CcccccccCCCCC
Q 014575          140 RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT--AIE-ELPSSIECLSRLSALYLDNCKRL--KSLPSSLCKLNSL  214 (422)
Q Consensus       140 ~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n--~i~-~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~l~~l~~L  214 (422)
                      .+..|+.|.+.++. +..+..+..|++|++|.++.|  .+. .++.....+++|++|++++|+..  .+++. +..+.+|
T Consensus        41 ~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL  118 (260)
T ss_pred             cccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence            45556666665543 344445566667777777777  443 55555556677777777775432  23322 4456667


Q ss_pred             cEEEccCCCCCC
Q 014575          215 NFIYLRWCSSLK  226 (422)
Q Consensus       215 ~~L~Ls~c~~l~  226 (422)
                      ..|++.+|....
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            777777775544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.45  E-value=0.0012  Score=60.85  Aligned_cols=102  Identities=26%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             CCCcEEeccCCCCCccccccCCCCCCCCEEEeeCC--CCCCCCcC-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCE
Q 014575          118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGC--SKLKTLPE-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSA  192 (422)
Q Consensus       118 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~--~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~  192 (422)
                      ..|+.|++.++.. .++-. +..|++|++|.++.|  .....++. ...+++|++|+|++|+|..+.  ..+..+.+|..
T Consensus        43 ~~le~ls~~n~gl-tt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGL-TTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccce-eeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            3455555555432 22211 336677888888887  33444442 334478888888888877422  12456677888


Q ss_pred             EecCCCCCCCcccc----cccCCCCCcEEEccCC
Q 014575          193 LYLDNCKRLKSLPS----SLCKLNSLNFIYLRWC  222 (422)
Q Consensus       193 L~L~~~~~l~~lp~----~l~~l~~L~~L~Ls~c  222 (422)
                      |++.+|.... +-.    .+.-+++|++||-..+
T Consensus       121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence            8888886555 211    1455788888876553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.36  E-value=0.00013  Score=71.15  Aligned_cols=131  Identities=21%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             cCCCCcEEeccCCCCCcccc--ccCCCCCCCCEEEeeCCCCCCCCc--CC-CCCCCcCEEEeeCccCc---ccCccccCC
Q 014575          116 HLDKLVNLNLNNCKSLRILP--AGIFRLEFLKELDLWGCSKLKTLP--EI-SSAGNIEVMYLNGTAIE---ELPSSIECL  187 (422)
Q Consensus       116 ~l~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~~~~l~~~p--~~-~~l~~L~~L~L~~n~i~---~lp~~i~~l  187 (422)
                      .+.+|+.|+.++|...+..+  .-..+..+|+.|.+++|+.....-  .+ .+...|+.+++.++...   ++-+.-.+.
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            45556666666665543322  111244566666666665433222  11 23345555555555332   232233445


Q ss_pred             CCCCEEecCCCCCCCcc-----cccccCCCCCcEEEccCCCCCCC-CCcccCCCCCCCEEeccCc
Q 014575          188 SRLSALYLDNCKRLKSL-----PSSLCKLNSLNFIYLRWCSSLKS-LPDELGNLEALDSLIAEGT  246 (422)
Q Consensus       188 ~~L~~L~L~~~~~l~~l-----p~~l~~l~~L~~L~Ls~c~~l~~-lp~~~~~l~~L~~L~l~~n  246 (422)
                      +.|+.|.++.|......     ...-..+..|..+.|++|+.+.. .-+.+..+++|+.+++-++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            56666666655433322     22223445555555665554332 1122334455555554444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.00023  Score=65.98  Aligned_cols=99  Identities=22%  Similarity=0.312  Sum_probs=74.3

Q ss_pred             CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCc--cccCCCCCCEEe
Q 014575          117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS--SIECLSRLSALY  194 (422)
Q Consensus       117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~  194 (422)
                      +.+.+.|+.-||. +..+.- ...++.|+.|.||-|. +..+..+..+++|++|+|..|.|..+-.  -+.++++|+.|+
T Consensus        18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3456677787874 333332 3478999999999975 5566677788899999999999987764  468899999999


Q ss_pred             cCCCCCCCccccc-----ccCCCCCcEEE
Q 014575          195 LDNCKRLKSLPSS-----LCKLNSLNFIY  218 (422)
Q Consensus       195 L~~~~~l~~lp~~-----l~~l~~L~~L~  218 (422)
                      |..|...+.-+..     +.-|++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998877766543     45678888886

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.08  E-value=0.0025  Score=35.68  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=14.1

Q ss_pred             CcCEEEeeCccCcccCccccC
Q 014575          166 NIEVMYLNGTAIEELPSSIEC  186 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp~~i~~  186 (422)
                      +|++|+|++|+|+.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.00035  Score=64.83  Aligned_cols=100  Identities=29%  Similarity=0.398  Sum_probs=76.6

Q ss_pred             CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccccc--ccCCCCCcEE
Q 014575          140 RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSS--LCKLNSLNFI  217 (422)
Q Consensus       140 ~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~--l~~l~~L~~L  217 (422)
                      .+.+.+.|++.||. +..+.-..+|+.|+.|.|+-|.|+.+.+ +..+++|++|+|..| .+..+-+.  +.++++|+.|
T Consensus        17 dl~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence            46778899999985 5566667789999999999999998863 778999999999985 45554432  5788999999


Q ss_pred             EccCCCCCCCCCcc-----cCCCCCCCEEe
Q 014575          218 YLRWCSSLKSLPDE-----LGNLEALDSLI  242 (422)
Q Consensus       218 ~Ls~c~~l~~lp~~-----~~~l~~L~~L~  242 (422)
                      .|..|+-.+.-+..     +.-|++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99988777665543     34567777664

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.69  E-value=0.0069  Score=32.83  Aligned_cols=20  Identities=35%  Similarity=0.909  Sum_probs=18.1

Q ss_pred             CceEEEccCCcccccccccc
Q 014575           70 KLVSIEMPHGNIQQLWDDVE   89 (422)
Q Consensus        70 ~L~~L~L~~~~l~~l~~~~~   89 (422)
                      +|++|+|++++++++|++++
T Consensus         1 ~LVeL~m~~S~lekLW~G~k   20 (20)
T PF07725_consen    1 NLVELNMPYSKLEKLWEGVK   20 (20)
T ss_pred             CcEEEECCCCChHHhcCccC
Confidence            58999999999999999864

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.61  E-value=0.0065  Score=56.46  Aligned_cols=132  Identities=19%  Similarity=0.164  Sum_probs=85.6

Q ss_pred             hhcCCCCcEEeccCCCCCccccc----cCCCCCCCCEEEeeCCCCCCCCcC--C-------------CCCCCcCEEEeeC
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPA----GIFRLEFLKELDLWGCSKLKTLPE--I-------------SSAGNIEVMYLNG  174 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~Ls~~~~l~~~p~--~-------------~~l~~L~~L~L~~  174 (422)
                      +..|++|+..+|+.|..-...|.    -|+.-+.|.+|.|++|. ++.+..  |             ..-+.|+......
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            55788899999998876655553    34567788899998875 443321  2             2356788888888


Q ss_pred             ccCcccCc-----cccCCCCCCEEecCCCCCCCcccc--------cccCCCCCcEEEccCCCCCCC----CCcccCCCCC
Q 014575          175 TAIEELPS-----SIECLSRLSALYLDNCKRLKSLPS--------SLCKLNSLNFIYLRWCSSLKS----LPDELGNLEA  237 (422)
Q Consensus       175 n~i~~lp~-----~i~~l~~L~~L~L~~~~~l~~lp~--------~l~~l~~L~~L~Ls~c~~l~~----lp~~~~~l~~  237 (422)
                      |++...|.     .+..-..|+++.+..|..-   |+        .+..+++|+.|||..|.....    +-..+..-+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            88886664     2333357888888875332   33        134568889999988765432    1112233345


Q ss_pred             CCEEeccCcccc
Q 014575          238 LDSLIAEGTAIR  249 (422)
Q Consensus       238 L~~L~l~~n~l~  249 (422)
                      |+.|.+..|-++
T Consensus       244 lrEL~lnDClls  255 (388)
T COG5238         244 LRELRLNDCLLS  255 (388)
T ss_pred             hhhccccchhhc
Confidence            788888888665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.39  E-value=0.0018  Score=59.99  Aligned_cols=229  Identities=14%  Similarity=0.099  Sum_probs=120.0

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCcee------EEccCCCCCCCeeEEEecCCCCC-CCCCCC-----CCCCceEEEccCC
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCK------VSYLVGPGFAEVRYLHWYGYPLK-SLPSNI-----HPEKLVSIEMPHG   79 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~------~~lp~~l~~~~Lr~L~l~~~~l~-~lP~~~-----~~~~L~~L~L~~~   79 (422)
                      +.+++-++|+..+++... .+.....      +-++.-+++++|+..+++.|-+. ..|...     ....|+.|.|++|
T Consensus        52 ~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          52 NVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             HHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            455666777777776643 2221111      11222233377888888877654 233322     5567888888888


Q ss_pred             ccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc-----cCCCCCCCCEEEeeCCCC
Q 014575           80 NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA-----GIFRLEFLKELDLWGCSK  154 (422)
Q Consensus        80 ~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~Ls~~~~  154 (422)
                      .+-.+-. -+--+-|.++...-.           ...-+.|+......|+ +...|.     .+..-..|+.+.+..|.+
T Consensus       131 GlGp~aG-~rigkal~~la~nKK-----------aa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk~vki~qNgI  197 (388)
T COG5238         131 GLGPIAG-GRIGKALFHLAYNKK-----------AADKPKLEVVICGRNR-LENGSKELSAALLESHENLKEVKIQQNGI  197 (388)
T ss_pred             CCCccch-hHHHHHHHHHHHHhh-----------hccCCCceEEEeccch-hccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence            7754322 111122222211000           3344567777776663 333221     121224677777777643


Q ss_pred             CCCC-c-----CCCCCCCcCEEEeeCccCccc-----CccccCCCCCCEEecCCCCCCCcccccc------cCCCCCcEE
Q 014575          155 LKTL-P-----EISSAGNIEVMYLNGTAIEEL-----PSSIECLSRLSALYLDNCKRLKSLPSSL------CKLNSLNFI  217 (422)
Q Consensus       155 l~~~-p-----~~~~l~~L~~L~L~~n~i~~l-----p~~i~~l~~L~~L~L~~~~~l~~lp~~l------~~l~~L~~L  217 (422)
                      -..- .     .+..+.+|+.|+|..|-++..     ...+..++.|+.|.+.+|-....=..++      ...++|..|
T Consensus       198 rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L  277 (388)
T COG5238         198 RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPL  277 (388)
T ss_pred             CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCcccc
Confidence            2210 0     134456888888888877733     2344566678888888875332211111      124566777


Q ss_pred             EccCCCCCCCCCcc------c-CCCCCCCEEeccCccccccccc
Q 014575          218 YLRWCSSLKSLPDE------L-GNLEALDSLIAEGTAIREVYFF  254 (422)
Q Consensus       218 ~Ls~c~~l~~lp~~------~-~~l~~L~~L~l~~n~l~~lp~f  254 (422)
                      -..+|..-+.+-..      . ..++-|..|.+.||++.+...|
T Consensus       278 ~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~  321 (388)
T COG5238         278 PGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADF  321 (388)
T ss_pred             ccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHH
Confidence            77666554432221      1 3455566666777777765543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.06  E-value=0.002  Score=63.08  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=17.1

Q ss_pred             CCCCCcEEEccCCCCCCCC-----CcccCCCCCCCEEeccCcc
Q 014575          210 KLNSLNFIYLRWCSSLKSL-----PDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       210 ~l~~L~~L~Ls~c~~l~~l-----p~~~~~l~~L~~L~l~~n~  247 (422)
                      +++.|+.|.+++|......     -..-..+..|+.+.|+++.
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            3455555555555444322     1112233445555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.91  E-value=0.15  Score=41.91  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCC-CC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccC
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGP-GF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPH   78 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l-~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~   78 (422)
                      .|+..+|.++++|+.+.+...-        ..++... .. .+|+.+++.+. +..++...  ...+|+.+.+..
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~~~--------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPNTI--------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             EECHHHHhCCCCCCEEEECCCe--------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            4677889998899988886421        1243332 22 46777766653 55555433  444566666644

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.85  E-value=0.13  Score=42.21  Aligned_cols=100  Identities=12%  Similarity=0.207  Sum_probs=40.7

Q ss_pred             hhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCC
Q 014575          114 TLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSR  189 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~  189 (422)
                      +..+++|+.+.+..  ....++ ..+.+.++|+.+.+.+.  +..++  .+..+++|+.+.+.+ .+..++. .+..+++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            44555666666653  233333 23444556666666552  34443  355555666666644 4444443 3344666


Q ss_pred             CCEEecCCCCCCCccccc-ccCCCCCcEEEccC
Q 014575          190 LSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRW  221 (422)
Q Consensus       190 L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~  221 (422)
                      |+.+.+..+  +..++.. +.+. +|+.+.+..
T Consensus        83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            666666542  3333332 3443 666666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.55  E-value=0.023  Score=29.58  Aligned_cols=16  Identities=25%  Similarity=0.557  Sum_probs=7.0

Q ss_pred             CcCEEEeeCccCcccC
Q 014575          166 NIEVMYLNGTAIEELP  181 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp  181 (422)
                      +|+.|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666555554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.58  E-value=0.013  Score=59.89  Aligned_cols=131  Identities=27%  Similarity=0.332  Sum_probs=80.0

Q ss_pred             hhcCCCCcEEeccCCCCCcc--ccccCCCCCCCCEEEeeCC-CCCCCCc-----CCCCCCCcCEEEeeCcc-Cccc--Cc
Q 014575          114 TLHLDKLVNLNLNNCKSLRI--LPAGIFRLEFLKELDLWGC-SKLKTLP-----EISSAGNIEVMYLNGTA-IEEL--PS  182 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~-~~l~~~p-----~~~~l~~L~~L~L~~n~-i~~l--p~  182 (422)
                      ...++.|+.|.+.+|..+..  +-......+.|+.|++++| ......+     ....+.+|+.|+++.+. ++..  ..
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            44567888888888876665  3233447788888888873 3333222     13345688888888776 5532  22


Q ss_pred             cccCCCCCCEEecCCCCCCC--cccccccCCCCCcEEEccCCCCCCC--CCcccCCCCCCCEEecc
Q 014575          183 SIECLSRLSALYLDNCKRLK--SLPSSLCKLNSLNFIYLRWCSSLKS--LPDELGNLEALDSLIAE  244 (422)
Q Consensus       183 ~i~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~Ls~c~~l~~--lp~~~~~l~~L~~L~l~  244 (422)
                      -...+++|+.|.+.+|..+.  .+-.....+++|+.|++++|..++.  +.....++++|+.|.+.
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            22347788888888876422  2222345677889999988877632  23333445555554433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.47  E-value=0.049  Score=28.33  Aligned_cols=16  Identities=13%  Similarity=0.125  Sum_probs=6.9

Q ss_pred             CCCEEeccCccccccc
Q 014575          237 ALDSLIAEGTAIREVY  252 (422)
Q Consensus       237 ~L~~L~l~~n~l~~lp  252 (422)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555666666655544

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.11  E-value=0.099  Score=29.08  Aligned_cols=17  Identities=12%  Similarity=0.266  Sum_probs=8.6

Q ss_pred             ceEEEccCCcccccccc
Q 014575           71 LVSIEMPHGNIQQLWDD   87 (422)
Q Consensus        71 L~~L~L~~~~l~~l~~~   87 (422)
                      |++|+|++|+|+.++++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            45555555555544443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.11  E-value=0.1  Score=30.17  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=16.1

Q ss_pred             CCCcCEEEeeCccCcccCccc
Q 014575          164 AGNIEVMYLNGTAIEELPSSI  184 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~lp~~i  184 (422)
                      +++|+.|+|++|+|+.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            457888888888888887654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.11  E-value=0.1  Score=30.17  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=16.1

Q ss_pred             CCCcCEEEeeCccCcccCccc
Q 014575          164 AGNIEVMYLNGTAIEELPSSI  184 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~lp~~i  184 (422)
                      +++|+.|+|++|+|+.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            457888888888888887654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.95  E-value=0.045  Score=55.88  Aligned_cols=111  Identities=26%  Similarity=0.355  Sum_probs=71.0

Q ss_pred             cchhhhcCCCCcEEeccCC-CCCcccc----ccCCCCCCCCEEEeeCCCCCCCCc--CCC-CCCCcCEEEeeCcc-Cc--
Q 014575          110 NHSLTLHLDKLVNLNLNNC-KSLRILP----AGIFRLEFLKELDLWGCSKLKTLP--EIS-SAGNIEVMYLNGTA-IE--  178 (422)
Q Consensus       110 ~~~li~~l~~L~~L~L~~~-~~l~~lp----~~i~~l~~L~~L~Ls~~~~l~~~p--~~~-~l~~L~~L~L~~n~-i~--  178 (422)
                      ...+...++.|+.|++++| ......+    .....+.+|+.|++++|......-  .+. .+++|+.|.+.++. ++  
T Consensus       206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~  285 (482)
T KOG1947|consen  206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE  285 (482)
T ss_pred             HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence            3344778899999999983 3332222    223356899999999987543332  232 36799999977776 55  


Q ss_pred             ccCccccCCCCCCEEecCCCCCCCc--ccccccCCCCCcEEEcc
Q 014575          179 ELPSSIECLSRLSALYLDNCKRLKS--LPSSLCKLNSLNFIYLR  220 (422)
Q Consensus       179 ~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls  220 (422)
                      .+-.....++.|+.|++++|...+.  +......+++|+.|.+.
T Consensus       286 gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  286 GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            3444556788899999999987532  22223345555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.87  E-value=0.33  Score=28.00  Aligned_cols=19  Identities=16%  Similarity=0.085  Sum_probs=15.4

Q ss_pred             CCCCCEEeccCcccccccc
Q 014575          235 LEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       235 l~~L~~L~l~~n~l~~lp~  253 (422)
                      +++|+.|+|++|.|+.+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            4678899999999888764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.87  E-value=0.33  Score=28.00  Aligned_cols=19  Identities=16%  Similarity=0.085  Sum_probs=15.4

Q ss_pred             CCCCCEEeccCcccccccc
Q 014575          235 LEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       235 l~~L~~L~l~~n~l~~lp~  253 (422)
                      +++|+.|+|++|.|+.+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            4678899999999888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.30  E-value=0.0082  Score=54.61  Aligned_cols=84  Identities=13%  Similarity=-0.014  Sum_probs=43.4

Q ss_pred             CCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEE
Q 014575          139 FRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY  218 (422)
Q Consensus       139 ~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~  218 (422)
                      ......+.||++.|+....--.++.++.|..|+++.|+|..+|..++.+..++.+++.. +.....|.+.+.++.+++++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhh
Confidence            34444455555554322222234444455555555566655665555555555555555 34555555555566666555


Q ss_pred             ccCCC
Q 014575          219 LRWCS  223 (422)
Q Consensus       219 Ls~c~  223 (422)
                      +-++.
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            55543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.40  E-value=0.021  Score=51.98  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             CCCc--CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccC
Q 014575          156 KTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG  233 (422)
Q Consensus       156 ~~~p--~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~  233 (422)
                      ..+|  ++......+.||++.|++..+-..+.-++.|..|+++. +...-+|..++.+..++.+++.. +.+...|.+.+
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~  108 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQK  108 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCcccc
Confidence            4455  56677789999999999999988888899999999998 67888999999888888988876 56788999999


Q ss_pred             CCCCCCEEeccCcccc
Q 014575          234 NLEALDSLIAEGTAIR  249 (422)
Q Consensus       234 ~l~~L~~L~l~~n~l~  249 (422)
                      ..+.++.+++.+|.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            9999999999888753

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.08  E-value=0.25  Score=44.23  Aligned_cols=89  Identities=24%  Similarity=0.308  Sum_probs=50.4

Q ss_pred             CCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccC
Q 014575           61 SLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGI  138 (422)
Q Consensus        61 ~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i  138 (422)
                      ++|... .-..++.++-+++.|...  |..+                       +.+++.++.|.+.+|+.....- +.+
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~e--Gle~-----------------------L~~l~~i~~l~l~~ck~~dD~~L~~l  146 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYE--GLEH-----------------------LRDLRSIKSLSLANCKYFDDWCLERL  146 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHH--HHHH-----------------------HhccchhhhheeccccchhhHHHHHh
Confidence            555543 223577777777777643  3222                       3345556667777776554321 112


Q ss_pred             C-CCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeC
Q 014575          139 F-RLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNG  174 (422)
Q Consensus       139 ~-~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~  174 (422)
                      + -.++|+.|++++|..++..-  .+..+++|+.|.|.+
T Consensus       147 ~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  147 GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            2 34677888888877665544  355666666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	422
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-05
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-05

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 131 LRILPAGIFRLEFLKELDLWGCSKLKTLPE----ISSAG------NIEVMYLNGTAIEEL 180
           LR LPA I  L  L+EL +  C +L  LPE      ++G      N++ + L  T I  L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 181 PSSIECLSRLSALYLDN-----------------------CKRLKSLPSSLCKLNSLNFI 217
           P+SI  L  L +L + N                       C  L++ P        L  +
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 218 YLRWCSSLKSLPDELGNLEALDSLIAEG 245
            L+ CS+L +LP ++  L  L+ L   G
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 123 LNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS 182
           L+L+N +   I  A IF+ +FL  L                       YLNG ++ ELP+
Sbjct: 229 LDLSNLQIFNI-SANIFKYDFLTRL-----------------------YLNGNSLTELPA 264
Query: 183 SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLI 242
            I+ LS L  L L +  RL SLP+ L     L + Y  + + + +LP E GNL  L  L 
Sbjct: 265 EIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLG 322
Query: 243 AEGTAIREVYF 253
            EG  + + + 
Sbjct: 323 VEGNPLEKQFL 333

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	422
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (290), Expect = 3e-29
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 16/203 (7%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           L+     +   +         N        + N    QI +R       + +        
Sbjct: 25  LRPYHDVLS--QWQRHYNADRNRWHSAWR-QANSNNPQIETRTGRALKATADLLEDATQP 81

Query: 119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAI 177
             V L L +   L   P   FRL  L+ + +     L  LP  +     +E + L    +
Sbjct: 82  GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPL 139

Query: 178 EELPSSIECLSRLSALYLDNCKRLKSLPSSLCK---------LNSLNFIYLRWCSSLKSL 228
             LP+SI  L+RL  L +  C  L  LP  L           L +L  + L   + ++SL
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSL 198

Query: 229 PDELGNLEALDSLIAEGTAIREV 251
           P  + NL+ L SL    + +  +
Sbjct: 199 PASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (285), Expect = 2e-28
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 21/189 (11%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWD-DVEHNGKLKQIISRACNFFTKSPNHSLTLHL 117
           L++LP++I             ++ +L +  +    +L ++          +        L
Sbjct: 139 LRALPASI------------ASLNRLRELSIRACPELTEL----PEPLASTDASGEHQGL 182

Query: 118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNG-T 175
             L +L L     +R LPA I  L+ LK L +     L  L   I     +E + L G T
Sbjct: 183 VNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCT 240

Query: 176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
           A+   P      + L  L L +C  L +LP  + +L  L  + LR C +L  LP  +  L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 236 EALDSLIAE 244
            A   ++  
Sbjct: 301 PANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (281), Expect = 5e-28
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 15/203 (7%)

Query: 50  RYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKS 108
             L     PL   P        L  + +    + +L D ++    L + ++ A N     
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL-ETLTLARNPLRAL 142

Query: 109 PNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEF---------LKELDLWGCSKLKTLP 159
           P  S+   L++L  L++  C  L  LP  +   +          L+ L L   + +++LP
Sbjct: 143 PA-SIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLP 199

Query: 160 -EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
             I++  N++ + +  + +  L  +I  L +L  L L  C  L++ P        L  + 
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 219 LRWCSSLKSLPDELGNLEALDSL 241
           L+ CS+L +LP ++  L  L+ L
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 24/153 (15%)

Query: 111 HSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLK-------------------ELDLWG 151
           H    H     NL      +LR     + + +                      +++   
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 152 CSKLKTLP---EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSL 208
              LK      E ++      + L    + + P     LS L  + +D    L  LP ++
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM 123

Query: 209 CKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
            +   L  + L     L++LP  + +L  L  L
Sbjct: 124 QQFAGLETLTLARN-PLRALPASIASLNRLREL 155

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNG 174
           HL KL  L+L  C +LR  P        LK L L  CS L TLP +I     +E + L G
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 175 -TAIEELPSSIECLSRLSALYLDNC---KRLKSLPSSL 208
              +  LPS I  L     + +      +  +  P + 
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 7/64 (10%), Positives = 11/64 (17%), Gaps = 1/64 (1%)

Query: 177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE 236
           +          S    LY      L+     L +             S         N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-NSNNPQ 59

Query: 237 ALDS 240
               
Sbjct: 60  IETR 63

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 24/154 (15%), Positives = 41/154 (26%), Gaps = 19/154 (12%)

Query: 102 CNFFTKSPN-----HSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK 156
            +   ++P          + L      NL N   +  +   I RL  L+ +         
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTN--RITFISKAIQRLTKLQIIYFANS-PFT 461

Query: 157 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF 216
                    +    Y      E    S   L  L+ + L NC  +  LP  L  L  L  
Sbjct: 462 YDNIAVDWEDANSDYAKQY--ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 217 IYLR---------WCSSLKSLPDELGNLEALDSL 241
           + +            +    L D+      +   
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 38/201 (18%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           LK +P+  + + +         +  +  D  +N K+                        
Sbjct: 631 LKYIPNIFNAKSVY-------VMGSV--DFSYN-KIGSEGRNISCSMD-------DYKGI 673

Query: 119 KLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE---------ISSAGNIE 168
               + L+  + ++  P  +F     +  + L     + ++PE           +   + 
Sbjct: 674 NASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLT 731

Query: 169 VMYLNGTAIEELPSSIEC--LSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR------ 220
            + L    +  L        L  LS + +       S P+     + L    +R      
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 221 WCSSLKSLPDELGNLEALDSL 241
               L+  P  +    +L  L
Sbjct: 791 GNRILRQWPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS 162
           +  T S        L   ++    +   +      +   + L   DL     +   PE+ 
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL-QDAINRNPEMK 415

Query: 163 SAGNIEVMYLNGT-------AIEELPSSIECLSRLSALYLDNCK---------------- 199
                  + L  T        I  +  +I+ L++L  +Y  N                  
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 200 ---RLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
              + ++   S   L  L  + L  C ++  LPD L +L  L SL
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 80  NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA--G 137
            +Q L  ++  N    + IS A      +          K+    +     L   PA   
Sbjct: 516 ELQSL--NIACN----RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS 568

Query: 138 IFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI-ECLSRLSALYLD 196
           + ++  L  LD     K++ L    +   +  + L+   IEE+P        ++  L   
Sbjct: 569 LQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 197 NCKRLKSLPS--SLCKLNSLNFIYLRWCSSLKSLPDELG---------NLEALD 239
           + K LK +P+  +   +  +  +   +   + S    +          N   + 
Sbjct: 628 HNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVT 679

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 18/154 (11%), Positives = 39/154 (25%), Gaps = 14/154 (9%)

Query: 98  ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKT 157
            ++  + +   P   L  +  ++  L+L    +   +P  I +L  LK L   G      
Sbjct: 304 FNKELDMWGDQPGVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF-GTHSETV 361

Query: 158 LPEISSAGNIEVMYLN----------GTAIEELPSSIECLSRLSALYLDNCKRLKSLPSS 207
              +     +                     +    +     L      N +       S
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 208 LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
              L       L   + +  +   +  L  L  +
Sbjct: 422 RISLKDTQIGNLT--NRITFISKAIQRLTKLQII 453

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 22/162 (13%), Positives = 41/162 (25%), Gaps = 42/162 (25%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           L SL  +     L         +  +  DV +N       ++  N         L     
Sbjct: 740 LTSLSDDFRATTLP-------YLSNM--DVSYN-CFSSFPTQPLNS------SQLK-AFG 782

Query: 119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 178
                +    + LR  P GI     L +L +                           I 
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-----------------------IR 819

Query: 179 ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220
           ++   +    +L  L + +   +    +S+C         L 
Sbjct: 820 KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 23/201 (11%), Positives = 61/201 (30%), Gaps = 37/201 (18%)

Query: 50  RYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD-DVEHNGKLKQIISRACNFFTKS 108
             +      +  +   +              + +L    + ++  + + I  A       
Sbjct: 186 TQIGQLSNNITFVSKAV------------MRLTKLRQFYMGNSPFVAENICEAWENENSE 233

Query: 109 PNHSLTL------HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS 162
                        +L  L ++ + NC +L  LP  +  L  ++ +++    +  +  ++ 
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLK 292

Query: 163 SAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSL--PSSLCKLNSLNFIYLR 220
                              +      ++  +Y+     LK+    +SL K+  L  +   
Sbjct: 293 DDWQA-------------LADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECL 338

Query: 221 WCSSLKSLPDELGNLEALDSL 241
           +   L+      G+   L SL
Sbjct: 339 YNQ-LEGKLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 9/142 (6%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EI 161
           +   KS   S  + L K   +   +   +  +   + RL  L++  +     +     E 
Sbjct: 169 DPQQKSIKKSSRITL-KDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 162 SSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRW 221
               N E      T         + L  L+ + + NC  L  LP+ L  L  +  I +  
Sbjct: 227 WENENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 222 C--SSLKSLPDELGNLEALDSL 241
               S + L D+   L      
Sbjct: 283 NRGISGEQLKDDWQALADAPVG 304

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 13/150 (8%), Positives = 42/150 (28%), Gaps = 6/150 (4%)

Query: 93  KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGC 152
             +Q      ++     ++        L+   +N+    + +           ++     
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS- 192

Query: 153 SKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKL 211
           + +  +   +     +   Y+  +       +            +  ++ K+       L
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPF----VAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 212 NSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
             L  + +  C +L  LP  L  L  +  +
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 28/201 (13%), Positives = 61/201 (30%), Gaps = 36/201 (17%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           LK +P+    + +         +  +  D  +N    +I S     F             
Sbjct: 389 LKYIPNIFDAKSVS-------VMSAI--DFSYN----EIGSVDGKNFDPLDPTPFKGI-- 433

Query: 119 KLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLP---------EISSAGNIE 168
            + ++NL+N + +   P  +F     L  ++L   + L  +P            +   + 
Sbjct: 434 NVSSINLSNNQ-ISKFPKELFSTGSPLSSINL-MGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 169 VMYLNGTAIEELPSSIEC--LSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSL- 225
            + L    + +L        L  L  + L         P+     ++L    +R      
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 226 -----KSLPDELGNLEALDSL 241
                +  P+ +    +L  L
Sbjct: 551 GNRTLREWPEGITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 34/264 (12%), Positives = 82/264 (31%), Gaps = 57/264 (21%)

Query: 11  PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEK 70
                ++ KLR     NS    EN C+                   +  ++       ++
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICE------------------AWENENSEYA---QQ 237

Query: 71  LVSIEMPHGNIQQLWD-DVEHNGKLKQI---ISR---------ACNFFTKSPNHSLTLH- 116
             + ++   N++ L D +V +   L ++   +           ACN              
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 117 ------LDKLVNLNLNNCK--SLRILPAGIFRLEFLKELDLWGCSKLKTL-PEISSAGNI 167
                  +K+  + +      +  +    + +++ L  L+     +L+   P   S   +
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKL 355

Query: 168 EVMYLNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSL--CKLNSLNFIYLR---- 220
             + L    I E+P++      ++  L   + K LK +P+      ++ ++ I       
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 221 ---WCSSLKSLPDELGNLEALDSL 241
                 +   L         + S+
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSI 438

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 99  SRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDL-----WGCS 153
           ++  + +   P  SL     ++  L+L    +   +P  I +L  L+ L L         
Sbjct: 63  NKELDMWGAQPGVSL-NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 154 KLKTLPEISS-----AGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSL 208
           +L     IS+           M+   T ++  P      S L    +++  + KS+  S 
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED--FSDLIKDCINSDPQQKSIKKSS 179

Query: 209 CKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL 241
                   I     +++  +   +  L  L   
Sbjct: 180 RITLKDTQIGQ-LSNNITFVSKAVMRLTKLRQF 211

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 21/161 (13%), Positives = 42/161 (26%), Gaps = 42/161 (26%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           L  L  +     L         +  +  D+ +N    +  ++  N        +L     
Sbjct: 500 LTKLSDDFRATTLP-------YLVGI--DLSYN-SFSKFPTQPLNS------STLK-GFG 542

Query: 119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 178
                +    ++LR  P GI     L +L +                           I 
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-----------------------IR 579

Query: 179 ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYL 219
           ++   I     +S L + +   +    S +C         L
Sbjct: 580 KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 27/243 (11%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           L SLP N+ P ++  +E+    +  L +       L+ + +   N  +     +L     
Sbjct: 71  LSSLPDNL-PPQITVLEITQNALISLPELP---ASLEYLDAC-DNRLS-----TLPELPA 120

Query: 119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 178
            L +L+++N + L +LP     LE    ++     +L  LPE     ++EV+ +    + 
Sbjct: 121 SLKHLDVDNNQ-LTMLPELPALLE---YINADNN-QLTMLPE--LPTSLEVLSVRNNQLT 173

Query: 179 ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR-WCSS--LKSLPDELGNL 235
            LP   E    L AL +     L+SLP+   + +      +   C    +  +P+ + +L
Sbjct: 174 FLP---ELPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 236 EALDSLIAEG---TAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFS 292
           +   ++I E    ++       Q + +    G  I    S     +    L      WF 
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289

Query: 293 NNK 295
            NK
Sbjct: 290 ENK 292

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.4 bits (172), Expect = 3e-13
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 22/168 (13%)

Query: 72  VSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSL 131
           +SI +P  N   L  +  +N  +    +   + + K          +K      N  +++
Sbjct: 1   MSIMLPINNNFSLSQNSFYN-TISGTYADYFSAWDK---------WEKQALPGENRNEAV 50

Query: 132 RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLS 191
            +L   +  +    EL L     L +LP+ +    I V+ +   A+  LP     L  L 
Sbjct: 51  SLLKECL--INQFSELQL-NRLNLSSLPD-NLPPQITVLEITQNALISLPELPASLEYLD 106

Query: 192 ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALD 239
           A       RL +LP     L  L+    +    L  LP+    LE ++
Sbjct: 107 ACDN----RLSTLPELPASLKHLDVDNNQ----LTMLPELPALLEYIN 146

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 37/191 (19%), Positives = 58/191 (30%), Gaps = 40/191 (20%)

Query: 44  PGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN---------GKL 94
              A + YL      L +LP                +++ L  DV++N           L
Sbjct: 97  ELPASLEYLDACDNRLSTLPELP------------ASLKHL--DVDNNQLTMLPELPALL 142

Query: 95  KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSK 154
           + I +   N  T  P          L  L++ N + L  LP     LE    LD+     
Sbjct: 143 EYINADN-NQLTMLPEL-----PTSLEVLSVRNNQ-LTFLPELPESLE---ALDVSTN-L 191

Query: 155 LKTLPE-----ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLC 209
           L++LP        S             I  +P +I  L     + L++   L S      
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESL 250

Query: 210 KLNSLNFIYLR 220
              +    Y  
Sbjct: 251 SQQTAQPDYHG 261

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 14/123 (11%)

Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 176
            +    LN+     L  LP  +     +  L +   + L +LP       +  + ++G  
Sbjct: 39  NNGNAVLNVGESG-LTTLPDCLPAH--ITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ 92

Query: 177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE 236
           +  LP     L  LS         L +LPS LCKL           + L SLP     L+
Sbjct: 93  LTSLPVLPPGLLELSIFSN-PLTHLPALPSGLCKLWIFG-------NQLTSLPVLPPGLQ 144

Query: 237 ALD 239
            L 
Sbjct: 145 ELS 147

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 40/224 (17%), Positives = 67/224 (29%), Gaps = 34/224 (15%)

Query: 44  PGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACN 103
              +E+  L  Y   L SLP       L  + +    +  L        +L ++ +    
Sbjct: 158 ALPSELCKLWAYNNQLTSLPMLP--SGLQELSVSDNQLASLPTLP---SELYKLWAYNNR 212

Query: 104 FFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISS 163
                   SL      L  L ++  + L  LP     L   KEL + G  +L +LP    
Sbjct: 213 L------TSLPALPSGLKELIVSGNR-LTSLPVLPSEL---KELMVSGN-RLTSLPM--L 259

Query: 164 AGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCS 223
              +  + +    +  LP S+  LS  + + L+    L        +             
Sbjct: 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQALR------------- 305

Query: 224 SLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEI 267
            + S P   G +   D   A     RE      +    L     
Sbjct: 306 EITSAPGYSGPIIRFDMAGASAP--RETRALHLAAADWLVPARE 347

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 140 RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCK 199
           R   ++++     +    L             +  + +  LP  +   + ++ L + +  
Sbjct: 27  RAAVVQKMRACLNNGNAVL------------NVGESGLTTLPDCL--PAHITTLVIPDN- 71

Query: 200 RLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGR 259
            L SLP+   +L +L     +    L SLP     L  L       T +  +       +
Sbjct: 72  NLTSLPALPPELRTLEVSGNQ----LTSLPVLPPGLLELSIFSNPLTHLPAL--PSGLCK 125

Query: 260 LLLPGNEI 267
           L + GN++
Sbjct: 126 LWIFGNQL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 13/151 (8%)

Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 176
              L  +   N + L  LP  +  L FL  +       LK LP+     ++E +      
Sbjct: 172 PPSLEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNNI 226

Query: 177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE 236
           +EELP  ++ L  L+ +Y DN   LK+LP     L +LN         L  LP+   +L 
Sbjct: 227 LEELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY----LTDLPELPQSLT 280

Query: 237 ALDSLIAEGTAIREVYFFQSSGRLLLPGNEI 267
            LD      + + E     +   L    NEI
Sbjct: 281 FLDVSENIFSGLSE--LPPNLYYLNASSNEI 309

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 50  RYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSP 109
            YL      L+ LP   +   L  I++ + ++++L D       L+ I +   N   + P
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG-NNQLEELP 189

Query: 110 NHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV 169
                 +L  L  +  +N   L+ LP     LE    +       L+ LPE+ +   +  
Sbjct: 190 ELQ---NLPFLTAIYADNNS-LKKLPDLPLSLE---SIVAGNN-ILEELPELQNLPFLTT 241

Query: 170 MYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP 229
           +Y +   ++ LP     L  L+         L  LP     L  L+            L 
Sbjct: 242 IYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSEN----IFSGLS 293

Query: 230 DELGNLEALD 239
           +   NL  L+
Sbjct: 294 ELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 20/130 (15%)

Query: 112 SLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 171
           SL      L  LN++N K L  LPA   RLE    L       L  +PE     N++ ++
Sbjct: 311 SLCDLPPSLEELNVSNNK-LIELPALPPRLE---RLIASFN-HLAEVPE--LPQNLKQLH 363

Query: 172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSS--LKSLP 229
           +    + E P   E +  L    +++   L  +P     L  L+        +  L+  P
Sbjct: 364 VEYNPLREFPDIPESVEDL---RMNS--HLAEVPELPQNLKQLH------VETNPLREFP 412

Query: 230 DELGNLEALD 239
           D   ++E L 
Sbjct: 413 DIPESVEDLR 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 16/128 (12%)

Query: 112 SLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 171
            L+     L  LN ++ + +R L      LE   EL++    KL  LP  +    +E + 
Sbjct: 291 GLSELPPNLYYLNASSNE-IRSLCDLPPSLE---ELNVSNN-KLIELP--ALPPRLERLI 343

Query: 172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDE 231
            +   + E+P        L  L+++    L+  P     +  L        S L  +P+ 
Sbjct: 344 ASFNHLAEVPELP---QNLKQLHVEYN-PLREFPDIPESVEDLRM-----NSHLAEVPEL 394

Query: 232 LGNLEALD 239
             NL+ L 
Sbjct: 395 PQNLKQLH 402

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 14/128 (10%)

Query: 124 NLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS 183
            L +  +L  +P     ++   E         +  P                A+  L   
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-------GNGEQREMAVSRLRDC 68

Query: 184 IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA 243
           +    +   L L+N   L SLP     L SL       C+SL  LP+   +L++L     
Sbjct: 69  L--DRQAHELELNNLG-LSSLPELPPHLESLVA----SCNSLTELPELPQSLKSLLVDNN 121

Query: 244 EGTAIREV 251
              A+ ++
Sbjct: 122 NLKALSDL 129

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 159 PEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
           P   S   ++    + + + E+P   E +   +  Y    +  ++ P    +   +    
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 219 LRWCS------------SLKSLPDELGNLEALD 239
           LR C              L SLP+   +LE+L 
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPPHLESLV 97

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 18/144 (12%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF--RLEFLKELDLWGCSKLKTLPE 160
           N  T   +        ++  L+L   + +  +         + L+ L+L     +  +  
Sbjct: 130 NKITMLRDLDEG-CRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKG 186

Query: 161 ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220
                 ++ + L+   +  +    +  + ++ + L N K L  +  +L    +L    LR
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLR 245

Query: 221 W----CSSLKSLPDELGNLEALDS 240
                C +L+    +   ++ +  
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 30/183 (16%)

Query: 111 HSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLP--EISSAGNI 167
           H +  + ++     + +   L+   A + +    +KELDL G   L  +   +++    +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 168 EVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP--SSLCKL----NSLNFIYLRW 221
           E++ L+   + E    +E LS L  L L+N   ++ L    S+  L    N+++ +    
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSR 118

Query: 222 CSSLKSL-----------PDELGNLEALDSLIAEG---TAIREVYFFQSSGR---LLLPG 264
               K++             + G    +  L  +      +       SS     L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 265 NEI 267
           N I
Sbjct: 179 NFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 18/142 (12%), Positives = 49/142 (34%), Gaps = 7/142 (4%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF--RLEFLKELDLWGCSKLKTLPE 160
           N  T   +        ++  L+L   + +  +         + L+ L+L     +  +  
Sbjct: 130 NKITMLRDLDEG-CRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKG 186

Query: 161 ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220
                 ++ + L+   +  +    +  + ++ + L N K L  +  +L    +L    LR
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLR 245

Query: 221 WCS-SLKSLPDELGNLEALDSL 241
                  +L D     + + ++
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 111 HSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLP--EISSAGNI 167
           H +  + ++     + +   L+   A + +    +KELDL G   L  +   +++    +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 168 EVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS 227
           E++ L+   + E    +E LS L  L L+N   ++ L        S+  ++     ++  
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANN-NISR 113

Query: 228 LPDELG-NLEALD 239
           +    G   + + 
Sbjct: 114 VSCSRGQGKKNIY 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 29/161 (18%), Positives = 43/161 (26%), Gaps = 30/161 (18%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EI 161
           N         L    D L +LNL     +  +   +     LK LDL    KL  +  E 
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEF 210

Query: 162 SSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNC----------------------- 198
            SA  +  + L    +  +  ++     L    L                          
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 199 --KRLKSLPSSLCKLNSLNFIYLRWCSSL-KSLPDELGNLE 236
             K+L       C + +L       C  L     D L  L 
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 48/244 (19%), Positives = 87/244 (35%), Gaps = 40/244 (16%)

Query: 8   YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEV---RYLHWYGYPLKSLPS 64
            +  D F+ + KL  ++   +         + Y+    F  +   +YL      +K LP 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKAN-------NLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121

Query: 65  NIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN 124
                          ++Q++  D++ N  +  I             +S      + V L 
Sbjct: 122 VHKI----------HSLQKVLLDIQDNINIHTI-----------ERNSFVGLSFESVILW 160

Query: 125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAIEELPS 182
           LN    ++ +    F    L EL+L   + L+ LP      A    ++ ++ T I  LPS
Sbjct: 161 LNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 183 SI-ECLSRLSALYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALD 239
              E L +L A    N   LK LP+   L  L   +  Y   C +  +   ++  L  + 
Sbjct: 220 YGLENLKKLRARSTYN---LKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPIC 276

Query: 240 SLIA 243
           +   
Sbjct: 277 NKSI 280

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 33/190 (17%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           +  +PS++             N  +L        KL+ I   A   F+            
Sbjct: 21  VTEIPSDLPR-----------NAIEL--RFVLT-KLRVIQKGA---FS---------GFG 54

Query: 119 KLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGT 175
            L  + ++    L ++ A +F  L  L E+ +   + L  +   +     N++ + ++ T
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 176 AIEELPSSIEC-LSRLSALYLDNCKRLKSLPS-SLCKL-NSLNFIYLRWCSSLKSLPDEL 232
            I+ LP   +    +   L + +   + ++   S   L      ++L     ++ + +  
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSA 173

Query: 233 GNLEALDSLI 242
            N   LD L 
Sbjct: 174 FNGTQLDELN 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 24/253 (9%)

Query: 2   SRIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKS 61
           ++   +       + +  L    F +  D+  +    +   G     V  ++   +   +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP---AVFEGLCEMSVESINLQKHYFFN 268

Query: 62  LPSNI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI-ISRACNFFTKSPNHSLTLHLD 118
           + SN       L  +++   ++ +L   +     LK++ +S   N F      S + +  
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA--NKFENLCQISAS-NFP 325

Query: 119 KLVNLNL-NNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSA----GNIEVMYLN 173
            L +L++  N K L +    +  LE L+ELDL     ++T    +       +++ + L+
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDL-SHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 174 GTAIEELPS-SIECLSRLSALYLDNCKRLKSL--PSSLCKLNSLNFIYLRWCSSLKSLPD 230
                 L + + +   +L  L L    RLK     S    L+ L  + L     L    +
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE 442

Query: 231 E----LGNLEALD 239
           +    L  L+ L+
Sbjct: 443 QLFDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 36/247 (14%), Positives = 74/247 (29%), Gaps = 26/247 (10%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAE---VRYLHWYGYPLKSLP-- 63
           +          L  L   +          +S +  P       ++ L +    +  L   
Sbjct: 120 IDFIPLHNQKTLESLYLGS--------NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 64  --SNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLV 121
             S++     +S+ +   +I  +      +   + +                   +  L 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 122 NLNLNNCKSLRILPAGIFRLEF--LKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAI 177
                +     I PA    L    ++ ++L        +   +      ++ + L  T +
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHL 290

Query: 178 EELPSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPDE----L 232
            ELPS +  LS L  L L    + ++L   S     SL  + ++  +    L       L
Sbjct: 291 SELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 233 GNLEALD 239
            NL  LD
Sbjct: 350 ENLRELD 356

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEI 161
           N      N + +  L  L  L+L  C+ +  +    F+    L  L L     L  + E 
Sbjct: 43  NVLPTIQNTTFS-RLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAET 99

Query: 162 SSAG--NIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFI 217
           + +G   ++ ++   T I  +    +     L +LYL +   + S+          L  +
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVL 158

Query: 218 YLRWCSSLKSL-PDELGNLEALDSL 241
             +   ++  L  +++ +L+   +L
Sbjct: 159 DFQNN-AIHYLSKEDMSSLQQATNL 182

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 18/151 (11%)

Query: 103 NFFTKSPNHSLTLH-LDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE 160
           +    S   +L L  L  L +LNL+  +    L    F+    L+ LDL    +LK    
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFT-RLKVKDA 417

Query: 161 ---ISSAGNIEVMYLNGTAIEELP-SSIECLSRLSALYLDNCKRLKSL----PSSLCKLN 212
                +   ++V+ L+ + ++       + L  L  L L              +SL  L 
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLG 476

Query: 213 SLNFIYLRWCSSLKSLPDE----LGNLEALD 239
            L  + L +C  L S+       L  +  +D
Sbjct: 477 RLEILVLSFC-DLSSIDQHAFTSLKMMNHVD 506

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 175
            LD++  L  +    ++ +  G+  L  L +++     +L  +  + +   +  + +N  
Sbjct: 44  DLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN 100

Query: 176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
            I ++   +  L+ L+ L L N + +  +   L  L +LN + L    ++  +   L  L
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSN-TISDIS-ALSGL 155

Query: 236 EALDSL 241
            +L  L
Sbjct: 156 TSLQQL 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 25/155 (16%)

Query: 116 HLDKLVNLNLNN----------CKSLRIL---------PAGIFRLEFLKELDLWGCSKLK 156
            L  L  L+  N            +L  L          + + +L  L+ L      ++ 
Sbjct: 154 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QIS 212

Query: 157 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF 216
            +  +    N++ + LNG  ++++  ++  L+ L+ L L N + + +L   L  L  L  
Sbjct: 213 DITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTKLTE 269

Query: 217 IYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
           + L   + + ++   L  L AL +L      + ++
Sbjct: 270 LKLG-ANQISNIS-PLAGLTALTNLELNENQLEDI 302

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 175
           +L  L  L L++   +  + A +  L  L++L     +++  L  +++   +E + ++  
Sbjct: 132 NLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSF--GNQVTDLKPLANLTTLERLDISSN 187

Query: 176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
            + ++   +  L+ L +L   N + +  +   L  L +L+ + L     LK +   L +L
Sbjct: 188 KVSDIS-VLAKLTNLESLIATNNQ-ISDIT-PLGILTNLDELSLNGN-QLKDIG-TLASL 242

Query: 236 EALDSL 241
             L  L
Sbjct: 243 TNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 141 LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKR 200
           L    +  L G + +      +    +  +  +   I+ +   +E L+ L+ +   N + 
Sbjct: 23  LAEKMKTVL-GKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ- 79

Query: 201 LKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQS 256
           L  +   L  L  L  I +     +  +   L NL  L  L      I ++   ++
Sbjct: 80  LTDIT-PLKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTLFNNQITDIDPLKN 132

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 44/263 (16%), Positives = 78/263 (29%), Gaps = 38/263 (14%)

Query: 8   YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIH 67
                    +C L   +F  +  D          +      V         ++ +    +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLD--YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 68  PEKLVSIEMPHGNIQQL---------WDDVEHNGKLKQIISRAC-----------NFFTK 107
                 +E+ +    Q                N K     S              N  + 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 108 SPNHSLTL-HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS---S 163
               S +      L  L+L+    +  + +    LE L+ LD      LK + E S   S
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLS 419

Query: 164 AGNIEVMYLNGTAIEELPSSI-ECLSRLSALYLDNCKRLKS--LPSSLCKLNSLNFIYLR 220
             N+  + ++ T      + I   LS L  L +      +   LP    +L +L F+ L 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLS 478

Query: 221 WCSSLKSLPDE----LGNLEALD 239
            C  L+ L       L +L+ L+
Sbjct: 479 QC-QLEQLSPTAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEI 161
           +   +    S+ L L  L+ L++++    R+   GIF  L  L+ L + G S  +     
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 162 SSAG--NIEVMYLNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFI 217
                 N+  + L+   +E+L  +    LS L  L + +  +LKS+P     +L SL  I
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523

Query: 218 YL 219
           +L
Sbjct: 524 WL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 34/248 (13%), Positives = 75/248 (30%), Gaps = 29/248 (11%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHP 68
           +       +  L   +    +   E    +          +  L      ++        
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGN--LEKFDKSALEGLCNLT-----IEEFRLAYLD 268

Query: 69  EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTK-------SPNHSLTLHLDKLV 121
             L  I      +  +      +  ++++   + NF  +             TL L  L 
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 122 NLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG----NIEVMYLNGTAI 177
            L   + K      + +  L  L+ LDL   + L      S +     +++ + L+   +
Sbjct: 329 RLTFTSNK-GGNAFSEVD-LPSLEFLDL-SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 178 EELPSSIECLSRLSALYLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLPDE---- 231
             + S+   L +L  L   +   LK +   S    L +L ++ +      +   +     
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNG 443

Query: 232 LGNLEALD 239
           L +LE L 
Sbjct: 444 LSSLEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 41/218 (18%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWD------------DVEHNGKLKQIISRAC---- 102
              +P N+ P    ++++    ++ L              D+    +++ I   A     
Sbjct: 19  FYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS 76

Query: 103 ---------NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGC 152
                    N        + +  L  L  L       L  L       L+ LKEL++   
Sbjct: 77  HLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN 134

Query: 153 SKLKTLPE---ISSAGNIEVMYLNGTAIEELP-SSIECLSRLSA----LYLDNCKRLKSL 204
             +++       S+  N+E + L+   I+ +  + +  L ++      L L     +  +
Sbjct: 135 -LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFI 192

Query: 205 PSSLCKLNSLNFIYLRWCSSLKSLPDE-LGNLEALDSL 241
                K   L+ + LR      ++    +  L  L+  
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 176
               +N  L    +  I  A    +  L  + L     +  L  I  A NI+ + +N   
Sbjct: 22  FKAYLNGLLGQSSTANITEAQ---MNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIH 77

Query: 177 IEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE 236
                + I  LS L  L +           +L  L SL  + +   +   S+  ++  L 
Sbjct: 78  ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 237 ALDSL 241
            ++S+
Sbjct: 137 KVNSI 141

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 9/160 (5%)

Query: 94  LKQIISRACNFFTKSPNHSLT-LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGC 152
            K  ++       +S   ++T   ++ L  + L N     +   GI     +K+L +   
Sbjct: 22  FKAYLNGLLG---QSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNI 76

Query: 153 SKLKTLPEISSAGNIEVMYLNGTAI-EELPSSIECLSRLSALYLDNCKRLKSLPSSLCKL 211
                   IS   N+E + + G  +  +   ++  L+ L+ L + +     S+ + +  L
Sbjct: 77  -HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 212 NSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV 251
             +N I L +  ++  +   L  L  L SL  +   + + 
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 175
            L  L  L++++      +   I  L  +  +DL     +  +  + +   ++ + +   
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

Query: 176 AIEELPSSIECLSRLSALYLDNCK 199
            + +    IE   +L+ LY  +  
Sbjct: 170 GVHDY-RGIEDFPKLNQLYAFSQT 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 7e-10
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 116 HLDKLVNLNLNNCK---SLRILPAGIFRLEFLKELDLWGCSKLK-TLP-EISSAGNIEVM 170
              ++ NL+L+         I P+ +  L +L  L + G + L   +P  I+    +  +
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 171 YLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK-SL 228
           Y+  T +   +P  +  +  L  L         +LP S+  L +L  I     + +  ++
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAI 165

Query: 229 PDELGNLEALDSLI 242
           PD  G+   L + +
Sbjct: 166 PDSYGSFSKLFTSM 179

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 24/150 (16%), Positives = 64/150 (42%), Gaps = 14/150 (9%)

Query: 111 HSLTLHLDKLVNL-NLNNCKSLRIL---------PAGIFRLEFLKELDLWGCSKLKTLPE 160
           H  T +++++ ++  + N   L  L          + +  L  L  L++    ++  +  
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDINA 260

Query: 161 ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220
           +     ++++ +    I ++ S +  LS+L++L+L+N +        +  L +L  ++L 
Sbjct: 261 VKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 221 WCSSLKSLPDELGNLEALDSLIAEGTAIRE 250
               +  +   L +L  +DS       I++
Sbjct: 320 QN-HITDIR-PLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 175
           +L KL NL +   K +  + A +  L  L+EL L     +  +  +++   +  + L   
Sbjct: 86  NLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGAN 142

Query: 176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
                 S +  ++ L+ L +   K +K +   +  L  L  + L +   ++ +   L +L
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSLNYN-QIEDIS-PLASL 198

Query: 236 EALDSLIAEGTAIREV 251
            +L    A    I ++
Sbjct: 199 TSLHYFTAYVNQITDI 214

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 43/245 (17%), Positives = 89/245 (36%), Gaps = 44/245 (17%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHP 68
           +  DTF     L+ L+  +         +++++       + + +     L +L   I  
Sbjct: 162 IEDDTFQATTSLQNLQLSS--------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213

Query: 69  EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRAC----------NFFTKSPNHSLTLHLD 118
           E+L               D  HN  +  +               N  T +      L+  
Sbjct: 214 EEL---------------DASHN-SINVVRGPVNVELTILKLQHNNLTDTAW---LLNYP 254

Query: 119 KLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTA 176
            LV ++L+  + L  +    F  ++ L+ L +   ++L  L         ++V+ L+   
Sbjct: 255 GLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH 312

Query: 177 IEELPSSIECLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYLRW-CSSLKSLPDELGN 234
           +  +  +     RL  LYLD+   + +L  S+   L +L   +  W C+SL++L   +  
Sbjct: 313 LLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 371

Query: 235 LEALD 239
               D
Sbjct: 372 PAVDD 376

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 12/161 (7%)

Query: 115 LHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMY 171
           + L+    +   N   +R LPA +      ++ L+L    +++ +   + A    I+ +Y
Sbjct: 48  ITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLY 105

Query: 172 LNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSL-CKLNSLNFIYLRWCSSLKSLP 229
           +   AI  LP  + + +  L+ L L+    L SLP  +      L  + +    +L+ + 
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIE 163

Query: 230 DE-LGNLEALDSLIAEGTAIREVYF--FQSSGRLLLPGNEI 267
           D+      +L +L      +  V      S     +  N +
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 44/251 (17%), Positives = 82/251 (32%), Gaps = 29/251 (11%)

Query: 3   RIKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAE---VRYLHWYGYPL 59
           R+K I      FT +  L  L             K+  L+   F +   ++ L      L
Sbjct: 91  RLKLI--PLGVFTGLSNLTKLDISE--------NKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 60  KSLPSNI--HPEKLVSIEMPHGNIQQLWDDV-EHNGKLKQIISRACNFFTKSPNHSLTLH 116
             +          L  + +   N+  +  +   H   L  ++           ++S    
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL-IVLRLRHLNINAIRDYSFK-R 198

Query: 117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNG 174
           L +L  L +++   L  +         L  L +  C  L  +P   +     +  + L+ 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSY 257

Query: 175 TAIEELPSSI-ECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLP--- 229
             I  +  S+   L RL  + L   + L  +   +   LN L  + +     L +L    
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315

Query: 230 -DELGNLEALD 239
              +GNLE L 
Sbjct: 316 FHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 120 LVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTA 176
              L+L   + ++ L    F     L+EL+L     +  +   +     N+  + L    
Sbjct: 34  TRLLDLGKNR-IKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 177 IEELPSSI-ECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPDE--- 231
           ++ +P  +   LS L+ L +    ++  L       L +L  + +     L  +      
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFS 149

Query: 232 -LGNLEALD 239
            L +LE L 
Sbjct: 150 GLNSLEQLT 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 42/236 (17%), Positives = 92/236 (38%), Gaps = 26/236 (11%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHP 68
           +  DTF     L+ L+  +         +++++       + + +     L +L   I  
Sbjct: 156 IEDDTFQATTSLQNLQLSS--------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA- 206

Query: 69  EKLVSIEMPHGNIQQLWDDVEHNGKLKQI-ISRACNFFTKSPNHSLTLHLDKLVNLNLNN 127
             +  ++  H +I  +   V     L  + +    N  T +      L+   LV ++L+ 
Sbjct: 207 --VEELDASHNSINVVRGPVNVE--LTILKLQH--NNLTDTAW---LLNYPGLVEVDLSY 257

Query: 128 CKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIE 185
            + L  +    F  ++ L+ L +   ++L  L         ++V+ L+   +  +  +  
Sbjct: 258 NE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP 315

Query: 186 CLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYLRW-CSSLKSLPDELGNLEALD 239
              RL  LYLD+   + +L  S+   L +L   +  W C+SL++L   +      D
Sbjct: 316 QFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 12/161 (7%)

Query: 115 LHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMY 171
           + L+    +   N   +R LPA +      ++ L+L    +++ +   + A    I+ +Y
Sbjct: 42  ITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLY 99

Query: 172 LNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSL-CKLNSLNFIYLRWCSSLKSLP 229
           +   AI  LP  + + +  L+ L L+    L SLP  +      L  + +    +L+ + 
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIE 157

Query: 230 DE-LGNLEALDSLIAEGTAIREVYF--FQSSGRLLLPGNEI 267
           D+      +L +L      +  V      S     +  N +
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 39/195 (20%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
           L ++P ++                 L  D+ HN  L ++ +      T          L 
Sbjct: 30  LPNVPQSLPS-----------YTALL--DLSHN-NLSRLRAEW--TPT---------RLT 64

Query: 119 KLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGT 175
            L +L L++   L  + +  F  +  L+ LDL     L TL E   +    +EV+ L   
Sbjct: 65  NLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN 122

Query: 176 AIEELPSSI-ECLSRLSALYLDNCKRLKSLP----SSLCKLNSLNFIYLRWCSSLKSLPD 230
            I  +  +  E +++L  LYL    ++   P        KL  L  + L   + LK LP 
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLS-SNKLKKLPL 180

Query: 231 ELGNLEALDSLIAEG 245
              +L+ L + +  G
Sbjct: 181 --TDLQKLPAWVKNG 193

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 13/146 (8%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE- 160
           N  +  P  S       L  L L++   L  + A  F  L  L++LDL   ++L+++   
Sbjct: 42  NRISHVPAASFR-ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 161 -ISSAGNIEVMYLNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFI 217
                G +  ++L+   ++EL   +   L+ L  LYL +   L++LP  +   L +L  +
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHL 158

Query: 218 YLRWCSSLKSLPDE----LGNLEALD 239
           +L   + + S+P+     L +L+ L 
Sbjct: 159 FLHG-NRISSVPERAFRGLHSLDRLL 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNL-NNCKSLRILPAGIFR---LEFLKELDLWGCSKLKTL 158
           N      ++  T  L  L  L+L N+  SLR L    F       L  L+L    K+  +
Sbjct: 339 NDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKI 396

Query: 159 PE--ISSAGNIEVMYLNGTAIEEL--PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSL 214
                S  G++EV+ L    I +         L  +  +YL   K L+   +S   + SL
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 215 NFIYLR--WCSSLKSLPDELGNLEALDSL 241
             + LR     ++ S P     L  L  L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE- 160
           N  ++  + +       L  L+L +   ++ +    F   + L  LDL     L +    
Sbjct: 83  NELSQLSDKTFA-FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLG 139

Query: 161 -ISSAGNIEVMYLNGTAIEELPS---SIECLSRLSALYLDNCKRLKSL-PSSLCKLNSLN 215
                 N++ + L+   I+ L S    I   S L  L L + + +K   P     +  L 
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLF 198

Query: 216 FIYLRWCSSLKSLPDELGNLEALDSL 241
            ++L       SL ++L    A  S+
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSI 224

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 103 NFFTKSPNHSLTLH-LDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE 160
                  +       L  L  L+L+N   +  +   +   LE L+ LDL     L  L +
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWK 521

Query: 161 ISSAG----------NIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSL-PSSL 208
            ++ G          ++ ++ L     +E+     + L  L  + L     L +L  S  
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVF 580

Query: 209 CKLNSLNFIYLRWCSSLKSLPDE-----LGNLEALD 239
               SL  + L+  + + S+  +       NL  LD
Sbjct: 581 NNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELD 615

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 122 NLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEEL 180
            L+L+    L             L +L+L    +L  L    +   +  + L+   ++ L
Sbjct: 35  ILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 181 PSSIECLSRLSALYLDNCKRLKSLPSSL-CKLNSLNFIYLRWCSSLKSLP----DELGNL 235
           P   + L  L+ L +   + L SLP      L  L  +YL+  + LK+LP         L
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKL 150

Query: 236 EALD 239
           E L 
Sbjct: 151 EKLS 154

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYL 172
            L  L  L+++  + L  LP G    L  L+EL L G ++LKTLP   ++    +E + L
Sbjct: 98  TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSL 155

Query: 173 NGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR---W-CS 223
               + ELP+ +   L  L  L L     L ++P      + L F +L    W C+
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 40/269 (14%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHP 68
           L       +  +R+L+  ++     N  +  +   P       +      L    S +  
Sbjct: 187 LLEIFADILSSVRYLELRDT-----NLARFQFSPLPVDEVSSPMKK----LAFRGSVLTD 237

Query: 69  EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNC 128
           E    +      I +L +    +  L  +     +           +    +  L++   
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG-KVETVTIRRLHIPQF 296

Query: 129 KSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAIEEL----PS 182
                L      LE +K + +   SK+  +P   S    ++E + L+   + E      +
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 183 SIECLSRLSALYLDNCK--RLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDS 240
                  L  L L       ++     L  L +L  + +    +   +PD     E +  
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRF 414

Query: 241 LIAEGTAIREV--YFFQSSGRLLLPGNEI 267
           L    T IR V     Q+   L +  N +
Sbjct: 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 6/184 (3%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE- 160
           N +      SL  +L  L  L + N ++   +    F  L  L EL++     L+     
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQ 166

Query: 161 -ISSAGNIEVMYLNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
            + S  +I  + L+ +    L     + LS +  L L +    +   S L      + + 
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 219 LRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGS 278
                      +    L  L   I E + + E      +G      +E  +      + +
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEV-EFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 279 SSIT 282
            +I 
Sbjct: 286 VTIR 289

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 116 HLDKLVNLNL--NNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSA----GNIE 168
           HL  L  L+L  N      +  +        L+ L L     L+++ +         N+ 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLT 390

Query: 169 VMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSL 228
            + ++      +P S +   ++  L L +   ++ + +  C   +L  + +   + L S 
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT--CIPQTLEVLDVSNNN-LDSF 446

Query: 229 PDELGNLEALD 239
              L  L+ L 
Sbjct: 447 SLFLPRLQELY 457

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 27/200 (13%)

Query: 8   YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAE----VRYLHWYGYPLKSLP 63
            +       +  L FL          N     YL           ++ L      L+S+ 
Sbjct: 324 LVPCSFSQHLKSLEFLDLSE------NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 64  SNIHP----EKLVSIEMPHGNIQQLWDDVEHNGKLKQI-ISRACNFFTKSPNHSLTLHLD 118
                    + L S+++       + D  +   K++ + +S                   
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS--TGIRVVKTCIPQ---- 431

Query: 119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 178
            L  L+++N   L         L  L+EL +    KLKTLP+ S    + VM ++   ++
Sbjct: 432 TLEVLDVSNNN-LDSFSLF---LPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLK 486

Query: 179 ELPSSI-ECLSRLSALYLDN 197
            +P  I + L+ L  ++L  
Sbjct: 487 SVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 59  LKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD 118
             S+PS +    + S+++    I  +           Q++    +        +    L 
Sbjct: 17  FTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY-SLG 74

Query: 119 KLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLP---EISSAGNIEVMYL-N 173
            L +L+L++   L  L +  F  L  LK L+L G    +TL       +  N++ + + N
Sbjct: 75  SLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 174 GTAIEELP-SSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPDE 231
                E+       L+ L+ L +     L++  S SL  +  ++ + L   S    L + 
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHL-SESAFLLEI 190

Query: 232 ----LGNLEALD 239
               L ++  L+
Sbjct: 191 FADILSSVRYLE 202

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYL 172
           +L KL  L L N   +  +P+  F  +  L  LDL    KL+ + E +  G  N++ + L
Sbjct: 145 YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPDE 231
               I+++P ++  L  L  L +        +   S   L+SL  +++     +  +   
Sbjct: 204 GMCNIKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERN 260

Query: 232 ----LGNLEALD 239
               L +L  L+
Sbjct: 261 AFDGLASLVELN 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYL 172
           +L KL  L L N   +  +P+  F  +  L+ LDL    +L  + E +  G  N+  + L
Sbjct: 134 YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPDE 231
               + E+P ++  L +L  L L     L ++   S   L  L  +++     ++ +   
Sbjct: 193 AMCNLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERN 249

Query: 232 ----LGNLEALD 239
               L +L  ++
Sbjct: 250 AFDNLQSLVEIN 261

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 49/188 (26%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNL----------------NNCKSLRIL---------PAG 137
           N        S  L L+ L  L+L                + C  L+ L            
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

Query: 138 IFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE-ELPSSIECLSRLSALYLD 196
           + R   L+ LD+   +    +P +     ++ + ++G  +  +   +I   + L  L + 
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 197 -----------NCKRLKSL-----------PSSLC-KLNSLNFIYLRWCSSLKSLPDELG 233
                        K L+ L           P  L    ++L  + L       ++P   G
Sbjct: 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 234 NLEALDSL 241
           +   L+SL
Sbjct: 316 SCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 125 LNNCKSLRIL-----------PAGIFRLEFLKELDLWGCSKLK-TLP-EISSAGNIEVMY 171
           L+NC  L  L           P+ +  L  L++L LW    L+  +P E+     +E + 
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLI 472

Query: 172 LNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD 230
           L+   +  E+PS +   + L+ + L N +    +P  + +L +L  + L   S   ++P 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 231 ELGNLEALDSL 241
           ELG+  +L  L
Sbjct: 533 ELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 7/133 (5%)

Query: 116 HLDKLVNLNLNNC---KSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 172
             DK+ +++L++         + + +  L  L+ L L       ++     + ++  + L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 173 NGTAIE-ELPS--SIECLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSL 228
           +  ++   + +  S+   S L  L + +         S   KLNSL  + L   S   + 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 229 PDELGNLEALDSL 241
                  +    L
Sbjct: 168 VVGWVLSDGCGEL 180

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 32/161 (19%)

Query: 112 SLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEV 169
            L+   D L  L+L+       +P        L+ L L   +    LP   +     ++V
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 170 MYLNGTAIE-ELPSSI-ECLSRLSALYLDNCK------------RLKSL----------- 204
           + L+      ELP S+    + L  L L +                 +L           
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 205 ---PSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSL 241
              P +L   + L  ++L +   L  ++P  LG+L  L  L
Sbjct: 408 GKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDL 447

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 24/225 (10%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF---AEVRYLHWYGYPLKSLPSN 65
           L    F K+ +L  L   +      N                 ++YL      + ++ SN
Sbjct: 43  LPHGVFDKLTQLTKLSLSS------NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96

Query: 66  IHP-EKLVSIEMPHGNIQQLWDDV--EHNGKLKQI-ISRACNFFTKSPNHSLTLHLDKLV 121
               E+L  ++  H N++Q+ +         L  + IS        + N      L  L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFN-GLSSLE 153

Query: 122 NLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAIE 178
            L +            IF  L  L  LDL  C +L+ L   +     +++V+ ++     
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 179 ELPSSI-ECLSRLSALYLDNCKRLKSLPSSLCK--LNSLNFIYLR 220
            L +   +CL+ L  L       + +      +   +SL F+ L 
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 120 LVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSA----GNIEVMYLNG 174
              L L + K L+ LP G+F +L  L +L L     L      S +     +++ + L+ 
Sbjct: 30  ATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 175 TAIEELPSSIECLSRLSALYLDNCKRLKSLPSS--LCKLNSLNFIYLRWCSSLKSLPDE- 231
             +  + S+   L +L  L   +   LK +        L +L ++ +      +   +  
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI 145

Query: 232 ---LGNLEALD 239
              L +LE L 
Sbjct: 146 FNGLSSLEVLK 156

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE- 160
           +   +    S  L L+KL+ L+++     +I   GIF  L  L  L + G S        
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 161 -ISSAGNIEVMYLNGTAIEELP-SSIECLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFI 217
             ++  N+  + L+   +E++     + L RL  L + +   L  L  S   +L SL+ +
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTL 526

Query: 218 YLRWCSSLKSLPDE----LGNLEALD 239
              +   +++          +L   +
Sbjct: 527 DCSFN-RIETSKGILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE- 160
           N      ++S + +  +L  L+L+ C+ +  +    +  L  L  L L G   +++    
Sbjct: 42  NPLKILKSYSFS-NFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN-PIQSFSPG 98

Query: 161 -ISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKS--LPSSLCKLNSLNF 216
             S   ++E +    T +  L S  I  L  L  L + +   + S  LP+    L +L  
Sbjct: 99  SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVH 157

Query: 217 IYLRWCSSLKSLPDE-LGNLEALDSL 241
           + L +   ++++    L  L     +
Sbjct: 158 VDLSYN-YIQTITVNDLQFLRENPQV 182

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 21/180 (11%)

Query: 70  KLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK 129
            + ++ +   +I+ L D  +H       I R      + P   L      L +L L   K
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR--CQLKQFPTLDLP----FLKSLTLTMNK 339

Query: 130 SLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG----NIEVMYLNGTAIEELPSSIE 185
              I    +  L  L  LDL   + L      S +     ++  + L+      + ++  
Sbjct: 340 -GSISFKKVA-LPSLSYLDL-SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM 396

Query: 186 CLSRLSALYLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLPDE----LGNLEALD 239
            L  L  L   +   LK +   S+   L  L ++ + +  + K   D     L +L  L 
Sbjct: 397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/227 (16%), Positives = 62/227 (27%), Gaps = 39/227 (17%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEIS 162
           N     P+    L    +    L               L  +  + L G   +K L ++ 
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVP 304

Query: 163 SAGNIEVMYLNGTAIEELPS--------------------SIECLSRLSALYLDNCK--R 200
                + + +    +++ P+                        L  LS L L       
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364

Query: 201 LKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG---TAIREVYFFQSS 257
                 S    NSL  + L +      +      LE L  L  +      + E   F S 
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 258 GRLL---LPGNEIPMWF--SFQSLGSSSITLKMPHAGWFSNNKVIGF 299
            +LL   +      + F   F  L +S  TLKM      + N     
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKM------AGNSFKDN 463

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 8/147 (5%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-- 160
           N      ++S      +L  L+L+ C+   I       L  L  L L G   +++L    
Sbjct: 38  NPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA 95

Query: 161 ISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSL--PSSLCKLNSLNFI 217
            S   +++ +    T +  L    I  L  L  L + +   ++S   P     L +L  +
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHL 154

Query: 218 YLRWCSSLKSLPDELGNLEALDSLIAE 244
            L           +L  L  +  L   
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAI 177
             NL+L+      +     F    L+ LDL  C  ++T+ +    S  ++  + L G  I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 178 EEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWC--SSLKSLPDELGN 234
           + L   +   LS L  L              +  L +L  + +      S K LP+   N
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSN 147

Query: 235 LEALDSL 241
           L  L+ L
Sbjct: 148 LTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLP-- 159
           +   +    S+ L L  L+ L++++    R+   GIF  L  L+ L + G S  +     
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 160 EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSL-PSSLCKLNSLNFI 217
             +   N+  + L+   +E+L P++   LS L  L + +     SL       LNSL  +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVL 523

Query: 218 YLR 220
              
Sbjct: 524 DYS 526

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 11/237 (4%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHP 68
                   +C L   +F  +  D      +          V         ++ +    + 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 69  EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNC 128
                +E+ +    Q          LK++   +           L   L+ L +L+ N  
Sbjct: 304 FGWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFL-DLSRNGL 359

Query: 129 KSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL--PSSIE 185
                     F    LK LDL     + T+         +E +    + ++++   S   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 186 CLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCS-SLKSLPDELGNLEALDSL 241
            L  L  L + +     +       L+SL  + +   S     LPD    L  L  L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 175
           H  +L+      C+ ++ L   +     L  LD      +  L  +S    +  +YLN T
Sbjct: 273 HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA-GITELD-LSQNPKLVYLYLNNT 328

Query: 176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
            + EL   +   ++L +L   N   ++    S+ K+ +LN  +        ++P E    
Sbjct: 329 ELTELD--VSHNTKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEA-EGQTITMPKETLTN 383

Query: 236 EAL 238
            +L
Sbjct: 384 NSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 9/134 (6%)

Query: 118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAI 177
           D   +      +          +L  L  LD      +  +  I     +  +      I
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNI 76

Query: 178 EELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA 237
             L   +   + L+ L  D+ K L +L   +  L  L ++       L  L   +     
Sbjct: 77  TTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPL 128

Query: 238 LDSLIAEGTAIREV 251
           L  L      + E+
Sbjct: 129 LTYLNCARNTLTEI 142

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 53/256 (20%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHP 68
           L     ++   L +L              ++ +      ++  L  +     +       
Sbjct: 118 LTKLDVSQNPLLTYLNCAR--------NTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQ 169

Query: 69  EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLD--KLVNLNLN 126
            +L +++     I +L  DV  N  L                    L+ D   +  L+LN
Sbjct: 170 TQLTTLDCSFNKITEL--DVSQNKLLN------------------RLNCDTNNITKLDLN 209

Query: 127 NCKSLRILPAGIFRLEF--LKELDLWGCSKLKTL---------PEISSAGNIEVMYLNGT 175
               L  L           L E+D+   ++L             ++S+   +  ++   T
Sbjct: 210 QNIQLTFL-----DCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264

Query: 176 AIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL 235
            + E+  +    ++L     + C+++K L   +     L  +  +    +  L   L   
Sbjct: 265 DLLEIDLTH--NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA-GITELD--LSQN 317

Query: 236 EALDSLIAEGTAIREV 251
             L  L    T + E+
Sbjct: 318 PKLVYLYLNNTELTEL 333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 36/271 (13%), Positives = 71/271 (26%), Gaps = 63/271 (23%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPG-FAEVRYLHW----YGYPLKSLP 63
           L    F  +  L FL                 L     F+ +  L             + 
Sbjct: 115 LSSSWFKPLSSLTFLNLLG--------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 64  SNI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLV 121
                    L  +E+   ++Q                                  +  + 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKS----------------LK---------SIQNVS 201

Query: 122 NLNLNNCKSLRILPAGIF-RLEFLKELDL----WGCSKLKTLPEISSAG-----NIEVMY 171
           +L L+  +   +L          ++ L+L            L    +           + 
Sbjct: 202 HLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCK-LNSLNFIYLR---W---CSS 224
           +   ++ ++   +  +S L  L      +LKS+P  +   L SL  I+L    W   C  
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319

Query: 225 LKSLPDELGNLEALDSLIAE----GTAIREV 251
           +  L   L      +   A+    G  +R +
Sbjct: 320 IDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 350

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 12/193 (6%)

Query: 80  NIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLH-LDKLVNLNLNN-----CKSLRI 133
            +Q+L  + +       ++ RA +              L  +  +          K L  
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 134 LPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSAL 193
                     ++ L L     L  L  +     +  + L+   +  LP ++  L  L  L
Sbjct: 433 NSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 194 YLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD--ELGNLEALDSLIAEGTAIREV 251
              +   L+++   +  L  L  + L   + L+       L +   L  L  +G ++ + 
Sbjct: 492 QASDN-ALENVD-GVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 252 YFFQSSGRLLLPG 264
              Q     +LP 
Sbjct: 549 EGIQERLAEMLPS 561

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 35/159 (22%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEISSAGNI------- 167
           +L K+ ++ + N ++L  +     + L  LK L ++    LK  P+++   +        
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILE 136

Query: 168 ----------------------EVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP 205
                                   + L       +       ++L A+YL+  K L  + 
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 206 SSLCK--LNSLNFIYLRWCSSLKSLPDE-LGNLEALDSL 241
                   +  + + +    S+ +LP + L +L+ L + 
Sbjct: 197 KDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 20/146 (13%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPE- 160
                 P+H+ + +L  +  + ++   +L+ L +  F  L  +  +++     L  +   
Sbjct: 41  THLRTIPSHAFS-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

Query: 161 -ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALYLDNCKRLKSLPS-SLCKL-NSLN 215
            +     ++ + +  T ++  P  + +        L + +   + S+P  +   L N   
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 216 FIYLRWCSSLKSLPDELGNLEALDSL 241
            + L       S+     N   LD++
Sbjct: 160 TLKLYNN-GFTSVQGYAFNGTKLDAV 184

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 34/193 (17%), Positives = 55/193 (28%), Gaps = 55/193 (28%)

Query: 8   YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIH 67
           Y+ PD   ++  L+FL  +N+                              LK  P    
Sbjct: 95  YIDPDALKELPLLKFLGIFNTG-----------------------------LKMFPDLTK 125

Query: 68  PEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNN 127
                              ++  N  +  I   A   F    N +LTL L        NN
Sbjct: 126 VYSTDI---------FFILEITDNPYMTSIPVNA---FQGLCNETLTLKLY-------NN 166

Query: 128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG---NIEVMYLNGTAIEELPSSI 184
                 +    F    L  + L     L  + + +  G      ++ ++ T++  LPS  
Sbjct: 167 --GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

Query: 185 ECLSRLSALYLDN 197
             L  L  L   N
Sbjct: 225 --LEHLKELIARN 235

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 26/180 (14%), Positives = 63/180 (35%), Gaps = 7/180 (3%)

Query: 45  GFAEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRAC 102
            F+ +   ++     + +           + ++  +  +     +   +    + +    
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 103 NFFTKSPNHS-LTLHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE 160
           N   +    + +T  +  L  L+++          G     + L  L++     L     
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIF 416

Query: 161 ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYL 219
                 I+V+ L+   I+ +P  +  L  L  L + + + LKS+P     +L SL  I+L
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWL 475

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 32/227 (14%)

Query: 8   YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNI- 66
            +H   F+ + KL+ L          N   +  +     + +  L  +   ++ +P  + 
Sbjct: 92  KIHEKAFSPLRKLQKLYISK------NH--LVEIPPNLPSSLVELRIHDNRIRKVPKGVF 143

Query: 67  -HPEKLVSIEMPHGNIQQLW--DDVEHNGKLKQI-ISRACNFFTKSPNHSLTLHLDKLVN 122
                +  IEM    ++            KL  + IS      T  P          L  
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE--AKLTGIPKDLPE----TLNE 197

Query: 123 LNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAIEE 179
           L+L++ K ++ +      R   L  L L    +++ +    +S    +  ++L+   +  
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSR 255

Query: 180 LPSSIECLSRLSALYLDNCKRLKSLPSS-------LCKLNSLNFIYL 219
           +P+ +  L  L  +YL     +  +  +         K    N I L
Sbjct: 256 VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 27/207 (13%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFA--EVRYLHWYGYPLKSLPSNI 66
           +    F+ +  +  +      + G N  + S      F   ++ YL      L  +P ++
Sbjct: 138 VPKGVFSGLRNMNCI------EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL 191

Query: 67  HPEKLVSIEMPHGNIQQLWDDV-EHNGKLKQI-ISRACNFFTKSPNHSLTLHLDKLVNLN 124
            PE L  + + H  IQ +  +      KL ++ +    N      N SL+  L  L  L+
Sbjct: 192 -PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH--NQIRMIENGSLS-FLPTLRELH 247

Query: 125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--------ISSAGNIEVMYLNGTA 176
           L+N K L  +PAG+  L+ L+ + L   + +  +                   + L    
Sbjct: 248 LDNNK-LSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

Query: 177 IEEL---PSSIECLSRLSALYLDNCKR 200
           +      P++  C++   A+   N K+
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNYKK 332

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 65/429 (15%), Positives = 120/429 (27%), Gaps = 153/429 (35%)

Query: 12  DTFTKMCKL----RFLKFYNSKDDGENKCKVSYLVGPGF--AEVRYL--HWYGYPLKSLP 63
           + F   CK+    RF +  +                      EV+ L   +     + LP
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 64  S---NIHPEKLVSI-EMPHGNIQQLWDDVEHNG--KLKQIISRACNFFTKSPNHSLTLHL 117
                 +P +L  I E     +   WD+ +H    KL  II                   
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIE------------------ 360

Query: 118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE---ISSAGNIEVMYLNG 174
                       SL +L    +R  F +         L   P    I +   + +++ + 
Sbjct: 361 -----------SSLNVLEPAEYRKMFDR---------LSVFPPSAHIPTI-LLSLIWFDV 399

Query: 175 TAIEELPSSIEC-LSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG 233
             I+     +   L + S +     +   S+PS          IYL     LK   +   
Sbjct: 400 --IKSDVMVVVNKLHKYSLVEKQPKESTISIPS----------IYLE----LKVKLENEY 443

Query: 234 NLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKMPHAGWFSN 293
            L    S++ +   I + +        L+P      ++S                     
Sbjct: 444 ALHR--SIV-DHYNIPKTFDSDD----LIPPYLDQYFYSH-------------------- 476

Query: 294 NKVIGFAYSAVVGFRDHHVKEKR---RFHLFCE------FMKAKPEDCTEPLVGRCFLWH 344
              IG           HH+K      R  LF        F++ K       +      W+
Sbjct: 477 ---IG-----------HHLKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAWN 515

Query: 345 FNYVEADHLLLGYYFFGDHDFSAFRKHNCDHVAVKFYLEDVNNQHERLDCCP---VKKCG 401
            +    + L              ++ + CD+          + ++ERL       + K  
Sbjct: 516 ASGSILNTL---------QQLKFYKPYICDN----------DPKYERLVNAILDFLPKIE 556

Query: 402 IHLLYAPDS 410
            +L+ +  +
Sbjct: 557 ENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 83/480 (17%), Positives = 138/480 (28%), Gaps = 148/480 (30%)

Query: 4   IKEIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLP 63
           I  I +  D  +       L F+      E    V   V      + Y  +   P+K+  
Sbjct: 51  IDHIIMSKDAVSG---TLRL-FWTLLSKQEEM--VQKFVEEVL-RINY-KFLMSPIKTEQ 102

Query: 64  SNIHPEKLVSIEMPHGNIQQLWDDV-----------EHNGKLKQIISRACNFFTKSPNHS 112
                   + IE       +L++D            +   KL+Q +          P  +
Sbjct: 103 RQPSMMTRMYIE----QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------RPAKN 152

Query: 113 LTLH----LDK--LVNLNLNNCKSLRILPAGIF------------RLEFLKELDLWGCSK 154
           + +       K  +      + K    +   IF             LE L++L       
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 155 LKTLPEISSAG--NIEVMYLNGTAIEELPSSIECLSRLSALYLDN-------------CK 199
             +  + SS     I  +      + +      CL     L L N             CK
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLLNVQNAKAWNAFNLSCK 267

Query: 200 ----------------------RLKSLPSSLCKLNSLNFIYLRWCS-SLKSLPDE--LGN 234
                                  L     +L      + + L++     + LP E    N
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTN 326

Query: 235 LEALDSLIAE----GTAIREVY----------FFQSSGRLLLPGNEIPMWFSFQSLG--- 277
              L S+IAE    G A  + +            +SS  +L P     M   F  L    
Sbjct: 327 PRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSVFP 382

Query: 278 -SSSITLKMPHAGWF--SNNKVIGFA-----YSAVVGFRDHHVKEKR-RFH-LFCEFMKA 327
            S+ I   +    WF    + V+        YS V    +   KE       ++ E +K 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV----EKQPKESTISIPSIYLE-LKV 437

Query: 328 KPEDCTEPLVGRCFLWHFNYVEA---DHLLL----GYYFF--GDH--------DFSAFRK 370
           K E+  E  + R  + H+N  +    D L+      Y++   G H          + FR 
Sbjct: 438 KLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 13/186 (6%)

Query: 42  VGPGFAEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIIS 99
           +   FAE+            +       P     +                  K  Q + 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 100 RACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEF-----LKELDLWGCSK 154
              N        +L      + +L   +  SL  L +  +         +  L+L     
Sbjct: 384 LQRNGLKNFFKVAL--MTKNMSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNLSSN-M 439

Query: 155 LKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP-SSLCKLNS 213
           L           ++V+ L+   I  +P  +  L  L  L + +  +LKS+P     +L S
Sbjct: 440 LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTS 498

Query: 214 LNFIYL 219
           L +I+L
Sbjct: 499 LQYIWL 504

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 34/189 (17%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 103 NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWGCSKLKTLPEI 161
           N      N    L    + +L+L++   +  L + +F  L+ LK L+L    K+  + + 
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KINKIADE 308

Query: 162 SSAG--NIEVMYLNGTAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY 218
           +  G  N++V+ L+   + EL SS    L +++ + L           +   L  L  + 
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368

Query: 219 LRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGS 278
           LR   +L ++      + ++  +   G  +  +     +  L+            ++L  
Sbjct: 369 LRDN-ALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLI-----HLSENRLENLDI 418

Query: 279 SSITLKMPH 287
               L++PH
Sbjct: 419 LYFLLRVPH 427

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 19/150 (12%)

Query: 102 CNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEI 161
            N     P  +LT +L  L    L N   L  L     R+  L+ L L    +  +    
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFL----LRVPHLQILILNQN-RFSSCSGD 444

Query: 162 SSAG---NIEVMYLNGTAIEEL------PSSIECLSRLSALYLDNCKRLKSLP-SSLCKL 211
            +     ++E ++L    ++            E LS L  LYL++   L SLP      L
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHL 503

Query: 212 NSLNFIYLRWCSSLKSLPDE--LGNLEALD 239
            +L  + L     L  L       NLE LD
Sbjct: 504 TALRGLSLNSN-RLTVLSHNDLPANLEILD 532

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 56/340 (16%), Positives = 108/340 (31%), Gaps = 61/340 (17%)

Query: 8   YLHPDTFTKMCKLRFLKFYNSK--------------------DDGENKCKVSYLVG--PG 45
           +LHPD F  +  L  L+ Y                       D  +N+ +  YL      
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 46  FAEVRYLHWYGYPLKSLP----SNIHPEKLVSIEMPHGNIQQLWD--------------- 86
              ++ + +    +  +       +  + L    +   ++                    
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 87  ---DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR--- 140
              DV  NG    I     N  +KS   SL L    ++         ++      F    
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLIL-AHHIMGAGFGFHN-IKDPDQNTFAGLA 264

Query: 141 LEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAIEELPSSI-ECLSRLSALYLDN 197
              ++ LDL     + +L      +  +++V+ L    I ++       L  L  L L  
Sbjct: 265 RSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 198 CKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPDE-LGNLEALDSLIAEGTAIREVYFFQ 255
              L  L S +   L  + +I L+    +  + D+    LE L +L     A+  ++F  
Sbjct: 324 N-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381

Query: 256 SSGRLLLPGNEI----PMWFSFQSLGSSSITLKMPHAGWF 291
           S   + L GN++     +  +   +  S   L+     +F
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 20/127 (15%)

Query: 122 NLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAG------NIEVMYLNG 174
            L L++ + +  L  G+F  L  LKEL L   ++L  LP     G       + V+ L  
Sbjct: 44  ILYLHDNQ-ITKLEPGVFDSLINLKELYLGS-NQLGALP----VGVFDSLTQLTVLDLGT 97

Query: 175 TAIEELPSSI-ECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP---- 229
             +  LPS++ + L  L  L++   K L  LP  + +L  L  + L   + LKS+P    
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALD-QNQLKSIPHGAF 155

Query: 230 DELGNLE 236
           D L +L 
Sbjct: 156 DRLSSLT 162

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 120 LVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTA 176
           +  ++L+    +  L    F RL+ L+ L +   +    +         ++ ++ L+   
Sbjct: 32  VNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 177 IEELPSSI-ECLSRLSALYLDNCKRLKSL---PSSLCKLNSLNFIYLRWCSSLKSLP--- 229
             +L +     L+ L  L L  C  L       +    L SL  + LR  +++K +    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPAS 148

Query: 230 --DELGNLEALD 239
               +     LD
Sbjct: 149 FFLNMRRFHVLD 160

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 117 LDKLVNLNLNNCKSLRILPAGIFR-LEFLKELDLWG-CSKLKTLPE--ISSAGNIEVMYL 172
              L  L ++  + +  +   +F  L  +  ++L     K   +          +  + +
Sbjct: 120 PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPDE 231
             T I  +P  +     L+ L+LD   ++  + + SL  LN+L  + L +  S+ ++ + 
Sbjct: 179 ADTNITTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNG 234

Query: 232 -LGNLEALDSLIAEGTAIREV--YFFQSSG--RLLLPGNEI 267
            L N   L  L      + +V            + L  N I
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 34/205 (16%), Positives = 77/205 (37%), Gaps = 28/205 (13%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAE---VRYLHWYGYPLKSLPSN 65
           +    F  + ++  +      + G N  K S +    F     + Y+      + ++P  
Sbjct: 136 VRKSVFNGLNQMIVV------ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189

Query: 66  IHPEKLVSIEMPHGNIQQLWDDV-EHNGKLKQI-ISRACNFFTKSPNHSLTLHLDKLVNL 123
           + P  L  + +    I ++     +    L ++ +S   N  +   N SL  +   L  L
Sbjct: 190 L-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF--NSISAVDNGSLA-NTPHLREL 245

Query: 124 NLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--------ISSAGNIEVMYLNGT 175
           +LNN K L  +P G+   ++++ + L   + +  +           +   +   + L   
Sbjct: 246 HLNNNK-LVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 176 AIEEL---PSSIECLSRLSALYLDN 197
            ++     PS+  C+   +A+ L N
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/216 (17%), Positives = 78/216 (36%), Gaps = 41/216 (18%)

Query: 9   LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNI-- 66
           + P  F  + KL  L          N  ++  L       ++ L  +   +  +  ++  
Sbjct: 91  ISPGAFAPLVKLERLYLSK------N--QLKELPEKMPKTLQELRVHENEITKVRKSVFN 142

Query: 67  HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN 126
              +++ +E+    ++              I + A   F           + KL  + + 
Sbjct: 143 GLNQMIVVELGTNPLKSSG-----------IENGA---FQ---------GMKKLSYIRIA 179

Query: 127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAIEELPS-S 183
           +   +  +P G+     L EL L G  K+  +   S  G  N+  + L+  +I  + + S
Sbjct: 180 DTN-ITTIPQGLPP--SLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 184 IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYL 219
           +     L  L+L+N K L  +P  L     +  +YL
Sbjct: 236 LANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYL 270

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 11/128 (8%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIFRLEF--LKELDLWGCSKLKTLPEISSAGNIEVMYLN 173
            L KL  L++N  +   +       +    L  L L    +L+    +    N+E++ + 
Sbjct: 83  DLTKLEELSVNRNRLKNLNG-----IPSACLSRLFLDNN-ELRDTDSLIHLKNLEILSIR 136

Query: 174 GTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG 233
              ++ +   +  LS+L  L L   + + +    L +L  +N+I L     +        
Sbjct: 137 NNKLKSI-VMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 234 NLEALDSL 241
            L   +++
Sbjct: 194 ELYITNTV 201

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 122 NLNLNNCKSLRILPAGIFRLEFLKELDLWGCS--KLKTLPEISSAGNIEVMYLNGTAIEE 179
             NL   KS+            L  +D    +   +K++  I    N+  + L G  + +
Sbjct: 23  KANLKK-KSVTDAVTQNE----LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD 77

Query: 180 LPSSIECLSRLSALYLDNCKRLKSLPSSL-CKLNSLNFIYLRWCSSLKSLP----DELGN 234
           +  +++ L+ L+ L L    +L+SLP+ +  KL +L  + L   + L+SLP    D+L N
Sbjct: 78  IS-ALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTN 134

Query: 235 LEALD 239
           L  L+
Sbjct: 135 LTYLN 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 116 HLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEI---SSAGNIEVMY 171
            L  L  L       L  L       L+ LKEL++   + +++       S+  N+E + 
Sbjct: 98  GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV-AHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 172 LNGTAIEELPSSI-ECLSRLSALYLD---NCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS 227
           L+   I+ +  +    L ++  L L    +   +  +     K   L  + L     LKS
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKS 214

Query: 228 LPDE-LGNLEALDSL 241
           +PD     L +L  +
Sbjct: 215 VPDGIFDRLTSLQKI 229

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 29/157 (18%)

Query: 45  GFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNF 104
               +  L      L++LP  +  ++LV       N+ +L   ++ N +LK +  R    
Sbjct: 83  ELKNLETLWVTDNKLQALPIGV-FDQLV-------NLAELR--LDRN-QLKSLPPRV--- 128

Query: 105 FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE--I 161
           F           L KL  L+L   + L+ LP G+F +L  LKEL L   ++LK +PE   
Sbjct: 129 FDS---------LTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAF 177

Query: 162 SSAGNIEVMYLNGTAIEELPSSI-ECLSRLSALYLDN 197
                ++ + L+   ++ +P    + L +L  L L  
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 111 HSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL--KTLPEI-SSAGNI 167
           H +     KL NL+L   +    +   + +   L  L+L GCS      L  + SS   +
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 168 EVMYLNGT------AIEELPSSIECLSRLSALYLDNCKR------LKSLPSSLCKLNSLN 215
           + + L+         ++   +       ++ L L   ++      L +L      L  L+
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAH--VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 216 FIYLRWCSSL 225
              L     L
Sbjct: 229 ---LSDSVML 235

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 22/122 (18%)

Query: 109 PNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE 168
           P   L  +  K+  ++  +   + I    +  L++++++ L  C        I       
Sbjct: 54  PTGPLDKY--KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY------IEDGC--- 102

Query: 169 VMYLNGTAIEELPSSIECLSRLSALYLDNCKRL--KSLPSSLCKLNSLNFIYLRWCSSLK 226
                   +E L         +  + + +C  +  K +  +L    +L +++L     +K
Sbjct: 103 --------LERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK 153

Query: 227 SL 228
             
Sbjct: 154 EK 155

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 19/143 (13%)

Query: 97  IISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK----SLRILPAGIFRLEFLKELDLWGC 152
           +I      +       ++ +L +L +++          L  L     R + L+ L L  C
Sbjct: 91  LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA--RADDLETLKLDKC 148

Query: 153 SKL--KTLPEISSA-GNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLC 209
           S      L  I +    I+ + +  ++  E     + L  L      +   L+ L   + 
Sbjct: 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEK--DGKWLHEL----AQHNTSLEVLNFYMT 202

Query: 210 KLNSLNFIYLRW----CSSLKSL 228
           +   ++   L      C SL S+
Sbjct: 203 EFAKISPKDLETIARNCRSLVSV 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	422
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.43
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.35
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.17
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.95
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.87
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.98
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.77

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.1e-25  Score=216.63  Aligned_cols=200  Identities=21%  Similarity=0.281  Sum_probs=165.6

Q ss_pred             CCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcc
Q 014575           16 KMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGK   93 (422)
Q Consensus        16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~   93 (422)
                      ...+++.|++++|.+.       .+|..+.. ++|++|++++|.+..+|..+ .+++|++|+|++|.+..++..      
T Consensus        79 ~~~~l~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~------  145 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS------  145 (328)
T ss_dssp             TSTTCCEEEEESSCCS-------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG------
T ss_pred             cccceeEEEccCCCch-------hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH------
Confidence            4578999999998753       36777766 89999999999999999877 888999999999988866544      


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCC---------CCCCCEEEeeCCCCCCCCc-CCCC
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR---------LEFLKELDLWGCSKLKTLP-EISS  163 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~---------l~~L~~L~Ls~~~~l~~~p-~~~~  163 (422)
                                          ++.+++|++|+|++|...+.+|..+..         +++|++|++++|... .+| .++.
T Consensus       146 --------------------l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~  204 (328)
T 4fcg_A          146 --------------------IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN  204 (328)
T ss_dssp             --------------------GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred             --------------------HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence                                567778888888888888888876654         888888888888655 566 5788


Q ss_pred             CCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575          164 AGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA  243 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l  243 (422)
                      +++|++|+|++|.++.+|..++.+++|++|++++|+..+.+|..++.+++|+.|++++|+..+.+|..++.+++|+.|++
T Consensus       205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCcccc
Q 014575          244 EGTAIR  249 (422)
Q Consensus       244 ~~n~l~  249 (422)
                      ++|.+.
T Consensus       285 ~~n~~~  290 (328)
T 4fcg_A          285 RGCVNL  290 (328)
T ss_dssp             TTCTTC
T ss_pred             CCCCch
Confidence            888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=5.1e-25  Score=237.39  Aligned_cols=232  Identities=18%  Similarity=0.186  Sum_probs=127.9

Q ss_pred             ChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCcccc-cc
Q 014575           10 HPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQ-LW   85 (422)
Q Consensus        10 ~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~-l~   85 (422)
                      -|.+|.++++|+.|++++|.+.+.      +|..+.. ++|++|++.+|.+. .+|..+ .+++|++|++++|++.+ ++
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  483 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGT------IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP  483 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESC------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cCHHHhcCCCCCEEECcCCcccCc------ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence            345556666666666665543221      3444444 56666666666655 445544 55666666666666653 33


Q ss_pred             ccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-----
Q 014575           86 DDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-----  160 (422)
Q Consensus        86 ~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-----  160 (422)
                      ..+..+++|+++....+.+.  ...|..++.+++|++|+|++|...+.+|..+.++++|+.|++++|...+.+|.     
T Consensus       484 ~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          484 SGLSNCTNLNWISLSNNRLT--GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             HHHhcCCCCCEEEccCCccC--CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            44455555555532222221  12233355666666666666665556666666666666666666654433331     


Q ss_pred             ------------------------------------------------------------------CCCCCCcCEEEeeC
Q 014575          161 ------------------------------------------------------------------ISSAGNIEVMYLNG  174 (422)
Q Consensus       161 ------------------------------------------------------------------~~~l~~L~~L~L~~  174 (422)
                                                                                        +..+++|+.|+|++
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~  641 (768)
T 3rgz_A          562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY  641 (768)
T ss_dssp             TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred             cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence                                                                              22234555666666


Q ss_pred             ccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          175 TAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       175 n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      |+++ .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|||++|+..+.+|..++.+++|+.|++++|+++
T Consensus       642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            6655 55556666666666666665555566666666666666666666555566666666666666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2.1e-24  Score=209.56  Aligned_cols=216  Identities=22%  Similarity=0.250  Sum_probs=183.4

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccc-ccccc
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQ-LWDDV   88 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~-l~~~~   88 (422)
                      ..+.++++|++|++++|.+.       .+|..+.. ++|++|++++|.+..+|..+ .+++|++|+|++|++.+ ++..+
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~-------~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM-------ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC-------CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             hhhhhCCCCCEEECCCCCcc-------chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence            44777999999999998753       37877777 99999999999999999888 88999999999976554 43332


Q ss_pred             cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcC
Q 014575           89 EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE  168 (422)
Q Consensus        89 ~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~  168 (422)
                      ...                 .....++.+++|++|+|++|.. ..+|..+.++++|+.|++++|...+..+.+..+++|+
T Consensus       171 ~~~-----------------~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~  232 (328)
T 4fcg_A          171 AST-----------------DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE  232 (328)
T ss_dssp             EEE-----------------C-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred             hhc-----------------cchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence            110                 0011156789999999999854 4899989999999999999998776555799999999


Q ss_pred             EEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575          169 VMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       169 ~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~  247 (422)
                      +|+|++|.+. .+|..++.+++|+.|++++|+..+.+|..+..+++|+.|+|++|+.++.+|+.++++++|+.+++..+.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            9999998775 789999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccccc
Q 014575          248 IREVY  252 (422)
Q Consensus       248 l~~lp  252 (422)
                      +..++
T Consensus       313 ~~~l~  317 (328)
T 4fcg_A          313 QAQLD  317 (328)
T ss_dssp             SCC--
T ss_pred             HHHHh
Confidence            76554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=3.5e-25  Score=213.60  Aligned_cols=210  Identities=15%  Similarity=0.165  Sum_probs=136.0

Q ss_pred             hhhhhCCCCCceEEEec-CCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCccccccc
Q 014575           11 PDTFTKMCKLRFLKFYN-SKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~-~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~l~~   86 (422)
                      |.+|.++++|++|++++ |.+.+      .+|..+.. ++|++|++++|.+. .+|..+ .+++|++|+|++|.+.+.  
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--  140 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVG------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT--  140 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEES------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC--
T ss_pred             ChhHhCCCCCCeeeCCCCCcccc------cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc--
Confidence            34566666666666663 43221      14444444 66666666666665 455545 556666666666666532  


Q ss_pred             cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCC-CCCEEEeeCCCCCCCCc-CCCCC
Q 014575           87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLE-FLKELDLWGCSKLKTLP-EISSA  164 (422)
Q Consensus        87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~l~~~p-~~~~l  164 (422)
                                             .+..++.+++|++|++++|...+.+|..+..++ +|+.|++++|...+.+| .+..+
T Consensus       141 -----------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          141 -----------------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             -----------------------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             -----------------------CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence                                   112256677777777777766667777777776 77777777776665555 45555


Q ss_pred             CCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575          165 GNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA  243 (422)
Q Consensus       165 ~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l  243 (422)
                      + |+.|+|++|.++ .+|..+..+++|+.|++++|...+.+|. +..+++|++|++++|...+.+|..+..+++|+.|++
T Consensus       198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence            5 777777777776 4455677777777777777665555554 667777777777777776677777777777777777


Q ss_pred             cCcccc-cccc
Q 014575          244 EGTAIR-EVYF  253 (422)
Q Consensus       244 ~~n~l~-~lp~  253 (422)
                      ++|.++ .+|.
T Consensus       276 s~N~l~~~ip~  286 (313)
T 1ogq_A          276 SFNNLCGEIPQ  286 (313)
T ss_dssp             CSSEEEEECCC
T ss_pred             cCCcccccCCC
Confidence            777776 4444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=9.1e-24  Score=227.61  Aligned_cols=187  Identities=16%  Similarity=0.180  Sum_probs=103.1

Q ss_pred             hhhhhCCC-CCceEEEecCCCCCCCceeEEccCCCCC---CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCcccc-
Q 014575           11 PDTFTKMC-KLRFLKFYNSKDDGENKCKVSYLVGPGF---AEVRYLHWYGYPLK-SLPSNI-HPEKLVSIEMPHGNIQQ-   83 (422)
Q Consensus        11 ~~~f~~m~-~L~~L~l~~~~~~~~~~~~~~lp~~l~~---~~Lr~L~l~~~~l~-~lP~~~-~~~~L~~L~L~~~~l~~-   83 (422)
                      |.+|.+++ +|+.|++++|.+.+      .+|..+..   ++|++|++.+|.+. .+|..+ .+++|++|++++|.+.+ 
T Consensus       360 p~~l~~l~~~L~~L~Ls~N~l~~------~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          360 PESLTNLSASLLTLDLSSNNFSG------PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT  433 (768)
T ss_dssp             CTTHHHHTTTCSEEECCSSEEEE------ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             cHHHHhhhcCCcEEEccCCCcCC------CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence            45566666 78888888765321      23433332   56667777666655 455555 56666666666666653 


Q ss_pred             ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCC
Q 014575           84 LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EIS  162 (422)
Q Consensus        84 l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~  162 (422)
                      ++..+..+++|+.+....+.+.+  ..+..++.+++|++|++++|...+.+|..+.++++|+.|++++|...+.+| .++
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  511 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG  511 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             ccHHHhcCCCCCEEECCCCcccC--cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence            34445555555555322222211  222235555556666666655555555555555666666666655555555 355


Q ss_pred             CCCCcCEEEeeCccCc-ccCccccCCCCCCEEecCCCCCCCccc
Q 014575          163 SAGNIEVMYLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       163 ~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      .+++|++|+|++|.++ .+|..++.+++|+.|++++|...+.+|
T Consensus       512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            5555555555555555 455555555555555555554444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=3.7e-23  Score=208.95  Aligned_cols=238  Identities=17%  Similarity=0.127  Sum_probs=137.5

Q ss_pred             eeeChhhhhCCCCCceEEEecCCCCCCCceeEEc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCccc
Q 014575            7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSY-LVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQ   82 (422)
Q Consensus         7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~l-p~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~   82 (422)
                      ..+.+.+|.+|++|++|++++|...+      .+ +..+.. ++|++|++++|.+..+ |..| .+++|++|++++|+++
T Consensus        43 ~~~~~~~~~~l~~L~~L~L~~n~~~~------~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  116 (455)
T 3v47_A           43 AELNETSFSRLQDLQFLKVEQQTPGL------VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD  116 (455)
T ss_dssp             CEECTTTTSSCTTCCEEECCCCSTTC------EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred             CcCChhHhccCccccEEECcCCcccc------eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC
Confidence            34567888899999999998876421      13 345555 8888888888888776 5555 7888888888888887


Q ss_pred             cc-ccc--ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCC-------------------
Q 014575           83 QL-WDD--VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR-------------------  140 (422)
Q Consensus        83 ~l-~~~--~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~-------------------  140 (422)
                      +. +..  +..+++|+++....+.+.... +..+++.+++|++|++++|...+..|..+..                   
T Consensus       117 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~  195 (455)
T 3v47_A          117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM  195 (455)
T ss_dssp             THHHHSSTTTTCTTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred             ccccCcccccCcccCCEEECCCCccCccC-cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence            62 222  566777777644433333221 2223667778888888887665555543332                   


Q ss_pred             ---------------CCCCCEEEeeCCCCCCCCcC--------------------------------------CC--CCC
Q 014575          141 ---------------LEFLKELDLWGCSKLKTLPE--------------------------------------IS--SAG  165 (422)
Q Consensus       141 ---------------l~~L~~L~Ls~~~~l~~~p~--------------------------------------~~--~l~  165 (422)
                                     +++|++|++++|...+..|.                                      +.  ..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
T 3v47_A          196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS  275 (455)
T ss_dssp             STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred             chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence                           24566666666543221110                                      00  113


Q ss_pred             CcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575          166 NIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       166 ~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~  244 (422)
                      +|+.|++++|.++.+ |..++.+++|+.|++++|...+..|..+..+++|+.|++++|...+..|..++.+++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            455555555555432 3345555555555555544444444455555555555555554433344455555555555555


Q ss_pred             Ccccccc
Q 014575          245 GTAIREV  251 (422)
Q Consensus       245 ~n~l~~l  251 (422)
                      +|.++.+
T Consensus       356 ~N~l~~~  362 (455)
T 3v47_A          356 YNHIRAL  362 (455)
T ss_dssp             SSCCCEE
T ss_pred             CCccccc
Confidence            5555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=1.7e-22  Score=204.51  Aligned_cols=222  Identities=18%  Similarity=0.170  Sum_probs=161.0

Q ss_pred             CCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccccc-ccCCcch
Q 014575           19 KLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWDD-VEHNGKL   94 (422)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L   94 (422)
                      +|+.|+|++|.+.      ...+..+.. ++|++|++++|.+..++. .| .+++|++|+|++|+|+.++.+ +..+++|
T Consensus        76 ~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           76 NTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            5666666665432      113444444 666666666666666553 23 566666666666666665543 4445555


Q ss_pred             HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc-cCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEee
Q 014575           95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA-GIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN  173 (422)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~  173 (422)
                      ++|....+.+..  ..+..+..+++|++|++++|..++.+|. .+.++++|+.|++++|. +..+|.+..+++|+.|+|+
T Consensus       150 ~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          150 RELWLRNNPIES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMS  226 (452)
T ss_dssp             CEEECCSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECT
T ss_pred             CEEECCCCCcce--eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECc
Confidence            555332222221  1122377889999999999888888875 47789999999999986 5567889999999999999


Q ss_pred             CccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          174 GTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       174 ~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      +|.++.+ |..+..+++|+.|++++|...+..|..+..+++|+.|+|++|+..+..+..+..+++|+.|++++|.+.
T Consensus       227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            9999977 567899999999999998777777888899999999999998666555566788999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=2e-22  Score=203.33  Aligned_cols=223  Identities=16%  Similarity=0.184  Sum_probs=158.0

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccc-cccCCcc
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWD-DVEHNGK   93 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~   93 (422)
                      ++|+.|+|++|.+.      ...+..+.. ++|++|++++|.+..++.. | .+++|++|+|++|+|+.++. .+..+++
T Consensus        64 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            34566666655432      112233444 5566666666665555532 3 45566666666666655544 2444555


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc-cCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEe
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA-GIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL  172 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L  172 (422)
                      |++|....+.+..  ..+..+..+++|++|+|++|..++.++. .+.++++|+.|++++|. +..+|.+..+++|+.|+|
T Consensus       138 L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L  214 (440)
T 3zyj_A          138 LKELWLRNNPIES--IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDL  214 (440)
T ss_dssp             CCEEECCSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEEC
T ss_pred             CceeeCCCCcccc--cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEEC
Confidence            5544222222211  1122377889999999999888887775 57789999999999986 567888999999999999


Q ss_pred             eCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          173 NGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       173 ~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      ++|.|+.+ |..+..+++|+.|+|++|...+..|..+..+++|+.|+|++|+..+..+..+..+++|+.|++++|.+.
T Consensus       215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99999977 668899999999999998777667778899999999999998766655667788999999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=6.5e-23  Score=210.83  Aligned_cols=84  Identities=17%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc-
Q 014575            7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL-   84 (422)
Q Consensus         7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l-   84 (422)
                      ..+.+.+|.++++|++|++++|.+..      ..|..+.. ++|++|++++|.++.+|.. .+++|++|++++|.+.++ 
T Consensus        34 ~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~  106 (520)
T 2z7x_B           34 SELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALP  106 (520)
T ss_dssp             CCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCC
T ss_pred             cccChhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccccc
Confidence            34667788888888888888876431      24566666 8888888888888888877 788888888888888763 


Q ss_pred             -cccccCCcchHHH
Q 014575           85 -WDDVEHNGKLKQI   97 (422)
Q Consensus        85 -~~~~~~l~~L~~l   97 (422)
                       +..+..+++|+++
T Consensus       107 ~p~~~~~l~~L~~L  120 (520)
T 2z7x_B          107 ICKEFGNMSQLKFL  120 (520)
T ss_dssp             CCGGGGGCTTCCEE
T ss_pred             chhhhccCCcceEE
Confidence             4566666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=206.14  Aligned_cols=241  Identities=20%  Similarity=0.122  Sum_probs=167.5

Q ss_pred             eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccc
Q 014575            7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQ   83 (422)
Q Consensus         7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~   83 (422)
                      ..+.+.+|.++++|+.|+|++|.+.      -..|..+.. ++|++|++++|.+..+|...  .+++|++|+|++|++..
T Consensus        45 ~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  118 (477)
T 2id5_A           45 KTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI  118 (477)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE
T ss_pred             ceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc
Confidence            3566788999999999999887643      124666666 88888888888888888753  77888888888888877


Q ss_pred             ccc-cccCCcchHHHHHhhccCCCC----------------------CCcchhhhcCCCCcEEeccCCCCCccccccCCC
Q 014575           84 LWD-DVEHNGKLKQIISRACNFFTK----------------------SPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFR  140 (422)
Q Consensus        84 l~~-~~~~l~~L~~l~~~~~~~~~~----------------------~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~  140 (422)
                      +.+ .+..+++|+.|....+.+...                      ...+..+..+++|+.|+|++|...+..+..+..
T Consensus       119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~  198 (477)
T 2id5_A          119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR  198 (477)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS
T ss_pred             CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhccc
Confidence            543 455666666662222211111                      011122455556666666665544444445666


Q ss_pred             CCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEE
Q 014575          141 LEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIY  218 (422)
Q Consensus       141 l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~  218 (422)
                      +++|+.|++++|.....+| ......+|+.|+|++|.++.+|. .+..+++|+.|+|++|...+..+..+..+++|+.|+
T Consensus       199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (477)
T 2id5_A          199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ  278 (477)
T ss_dssp             CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred             CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence            6777777777766666555 33444578888888888888884 578888888888888765555555678888888888


Q ss_pred             ccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          219 LRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       219 Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      |++|...+..|..+..+++|+.|++++|.++.+|.
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             CCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence            88887777778888888888888888888887764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.1e-22  Score=211.52  Aligned_cols=85  Identities=14%  Similarity=0.149  Sum_probs=67.0

Q ss_pred             eeeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc
Q 014575            6 EIYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL   84 (422)
Q Consensus         6 ~~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l   84 (422)
                      -..+.+.+|.++++|++|++++|.+..      ..|..+.. ++|++|++++|.+..+|.. .+++|++|++++|++.++
T Consensus        64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l  136 (562)
T 3a79_B           64 ISELRMPDISFLSELRVLRLSHNRIRS------LDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVL  136 (562)
T ss_dssp             CCCCCGGGTTTCTTCCEEECCSCCCCE------ECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBC
T ss_pred             ccccChhhhccCCCccEEECCCCCCCc------CCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCcccc
Confidence            345667889999999999999887531      24566766 8899999999999999888 888999999999998876


Q ss_pred             c--ccccCCcchHHH
Q 014575           85 W--DDVEHNGKLKQI   97 (422)
Q Consensus        85 ~--~~~~~l~~L~~l   97 (422)
                      +  ..+..+++|+++
T Consensus       137 ~~p~~~~~l~~L~~L  151 (562)
T 3a79_B          137 PVCKEFGNLTKLTFL  151 (562)
T ss_dssp             CCCGGGGGCTTCCEE
T ss_pred             CchHhhcccCcccEE
Confidence            4  466777777766

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=7e-22  Score=191.51  Aligned_cols=222  Identities=14%  Similarity=0.137  Sum_probs=168.3

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCccccccccccCCcch
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKL   94 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L   94 (422)
                      ++|+.|++++|.+...      .+..+.. ++|++|++++|.+..+ |..| .+++|++|++++|.++.++..+.  ++|
T Consensus        52 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL  123 (330)
T ss_dssp             TTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred             CCCeEEECCCCcCCEe------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence            4788888888764321      2234555 7888888888888777 5555 77888888888888887765443  455


Q ss_pred             HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCC--ccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEE
Q 014575           95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSL--RILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY  171 (422)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~  171 (422)
                      +++....+.+.  ...+..+..+++|++|++++|...  +..+..+.++++|+.|++++|... .+| .+.  ++|++|+
T Consensus       124 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~  198 (330)
T 1xku_A          124 QELRVHENEIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH  198 (330)
T ss_dssp             CEEECCSSCCC--BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred             cEEECCCCccc--ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence            55532222222  223344788999999999998764  356777888999999999998754 455 343  6999999


Q ss_pred             eeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575          172 LNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       172 L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      +++|.++.+ |..+..+++|+.|++++|...+..|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.++.
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCc
Confidence            999999977 568899999999999997766655667889999999999997 456899999999999999999999998


Q ss_pred             ccc
Q 014575          251 VYF  253 (422)
Q Consensus       251 lp~  253 (422)
                      +|.
T Consensus       278 ~~~  280 (330)
T 1xku_A          278 IGS  280 (330)
T ss_dssp             CCT
T ss_pred             cCh
Confidence            764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=2.4e-22  Score=204.46  Aligned_cols=225  Identities=14%  Similarity=0.123  Sum_probs=162.4

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCcccccccc-ccCCcc
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQLWDD-VEHNGK   93 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~   93 (422)
                      ++|+.|++++|.+..      ..+..+.. ++|++|++++|.+..+ |..| .+++|++|+|++|+++.++.+ +..+++
T Consensus        32 ~~l~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKNRIKT------LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             TTCSEEECCSSCCCE------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred             CCCcEEECCCCccce------ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence            589999999987532      13556766 9999999999999988 5556 889999999999999998765 477888


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEe
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYL  172 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L  172 (422)
                      |++|....+.+...  .+..+..+++|++|++++|...+..|..+.++++|+.|++++|......+ .+..+++|+.|+|
T Consensus       106 L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          106 LTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             CCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             CCEEECCCCccccC--ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            88884444433222  23347889999999999998777777788899999999999987554444 4888899999999


Q ss_pred             eCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCC-cccCCCCCCCEEeccCccccc
Q 014575          173 NGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP-DELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       173 ~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      ++|.++.++. .+..+++|+.|++++|..++.+|..+....+|+.|++++|.. ..+| ..+..+++|+.|++++|.++.
T Consensus       184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred             CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCc
Confidence            9999987764 677888888888888776666665544444555555555432 2333 234444444444444444443


Q ss_pred             c
Q 014575          251 V  251 (422)
Q Consensus       251 l  251 (422)
                      +
T Consensus       263 ~  263 (477)
T 2id5_A          263 I  263 (477)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=2e-22  Score=203.50  Aligned_cols=240  Identities=14%  Similarity=0.075  Sum_probs=168.8

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCC-CCCC--C-CCCCceEEEccCCccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKS-LPSN--I-HPEKLVSIEMPHGNIQ   82 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~-lP~~--~-~~~~L~~L~L~~~~l~   82 (422)
                      .+.+.+|.++++|++|++++|.+.      ...|..+.. ++|++|++++|.+.. +|..  + .+++|++|+|++|.+.
T Consensus        69 ~i~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  142 (455)
T 3v47_A           69 VIRNNTFRGLSSLIILKLDYNQFL------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK  142 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTCTTC------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred             eECcccccccccCCEEeCCCCccC------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence            466788999999999999988643      224666776 888888888888775 2332  4 6788888888888888


Q ss_pred             ccccc--ccCCcchHHHHHhhccCCCCCC--cchh------------------------------hhcCCCCcEEeccCC
Q 014575           83 QLWDD--VEHNGKLKQIISRACNFFTKSP--NHSL------------------------------TLHLDKLVNLNLNNC  128 (422)
Q Consensus        83 ~l~~~--~~~l~~L~~l~~~~~~~~~~~~--~~~l------------------------------i~~l~~L~~L~L~~~  128 (422)
                      .+.+.  +..+++|+++....+.+.....  ...+                              +..+++|++|++++|
T Consensus       143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred             ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence            76433  5667777776333332222111  0000                              123467888888887


Q ss_pred             CCCccccccCC---------------------------------------CCCCCCEEEeeCCCCCCCCc-CCCCCCCcC
Q 014575          129 KSLRILPAGIF---------------------------------------RLEFLKELDLWGCSKLKTLP-EISSAGNIE  168 (422)
Q Consensus       129 ~~l~~lp~~i~---------------------------------------~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~  168 (422)
                      ...+..|..+.                                       ..++|+.|++++|...+..| .++.+++|+
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  302 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE  302 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCC
Confidence            65544333221                                       12578888888887766666 477888888


Q ss_pred             EEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575          169 VMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       169 ~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~  247 (422)
                      .|+|++|.++.+ |..++.+++|+.|++++|...+..|..+..+++|+.|+|++|...+..|..+..+++|++|++++|.
T Consensus       303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            888888888866 4577888888888888876655557778888888888888887766678888888888888888888


Q ss_pred             cccccc
Q 014575          248 IREVYF  253 (422)
Q Consensus       248 l~~lp~  253 (422)
                      ++.+|.
T Consensus       383 l~~~~~  388 (455)
T 3v47_A          383 LKSVPD  388 (455)
T ss_dssp             CSCCCT
T ss_pred             cccCCH
Confidence            887764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=8.7e-23  Score=195.67  Aligned_cols=226  Identities=18%  Similarity=0.147  Sum_probs=180.4

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCC-CCC-CCeeEEEecCCCCCCC---CCCC-CCCCceEEEccCCccccccccccCC
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVG-PGF-AEVRYLHWYGYPLKSL---PSNI-HPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~-l~~-~~Lr~L~l~~~~l~~l---P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      ++|+.|++++|.+.       .+|.+ +.. ++|++|++++|.+..+   |..+ .+++|++|++++|.+..++..+..+
T Consensus        28 ~~l~~L~L~~n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCEEECCCCccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence            57889999887643       25554 445 8899999999888765   3333 6788999999999988887777788


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC-CCc-CCCCCCCcCE
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK-TLP-EISSAGNIEV  169 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~  169 (422)
                      ++|+++....+.+...... ..+..+++|++|++++|...+..|..+.++++|++|++++|.... .+| .+..+++|++
T Consensus       101 ~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             TTCCEEECTTSEEESSTTT-TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCEEECCCCcccccccc-hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            8888774443333332221 236788999999999998777788888899999999999997665 355 5889999999


Q ss_pred             EEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC-CCCEEeccCcc
Q 014575          170 MYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE-ALDSLIAEGTA  247 (422)
Q Consensus       170 L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~-~L~~L~l~~n~  247 (422)
                      |+|++|.++.+ |..+..+++|+.|++++|...+..+..+..+++|+.|++++|...+..|..+..++ +|+.|++++|.
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            99999999977 66789999999999999776555555788999999999999998888898898884 89999999999


Q ss_pred             cccc
Q 014575          248 IREV  251 (422)
Q Consensus       248 l~~l  251 (422)
                      ++..
T Consensus       260 ~~~~  263 (306)
T 2z66_A          260 FACT  263 (306)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            8743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=1.3e-23  Score=202.65  Aligned_cols=204  Identities=16%  Similarity=0.129  Sum_probs=157.6

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecC-CCCC-CCCCCC-CCCCceEEEccCCccccccccccCCcc
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYG-YPLK-SLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGK   93 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~-~~l~-~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~   93 (422)
                      .+++.|+++++.+.+.    ..+|..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.+.+..        
T Consensus        50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--------  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--------  117 (313)
T ss_dssp             CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC--------
T ss_pred             ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC--------
Confidence            3556666666554321    124444444 5666666663 4443 455555 5566666666666655321        


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCC-CcCEEE
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAG-NIEVMY  171 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~-~L~~L~  171 (422)
                                       +..+..+++|++|+|++|...+.+|..+.++++|++|++++|...+.+| .+..++ +|+.|+
T Consensus       118 -----------------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          118 -----------------PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             -----------------CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             -----------------CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence                             2227788999999999998888999999999999999999998776777 688887 999999


Q ss_pred             eeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc-
Q 014575          172 LNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR-  249 (422)
Q Consensus       172 L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-  249 (422)
                      |++|.++ .+|..+..++ |+.|++++|...+..|..+..+++|+.|++++|...+.+|. +..+++|++|++++|.++ 
T Consensus       181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence            9999998 7899999987 99999999988888999999999999999999887766666 788999999999999998 


Q ss_pred             ccc
Q 014575          250 EVY  252 (422)
Q Consensus       250 ~lp  252 (422)
                      .+|
T Consensus       259 ~~p  261 (313)
T 1ogq_A          259 TLP  261 (313)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=3.6e-22  Score=197.98  Aligned_cols=232  Identities=12%  Similarity=0.076  Sum_probs=157.1

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL   84 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l   84 (422)
                      .+++..|.++++|+.|++++|.+.      -..+..+.. ++|++|++++|.+..+|+. + .+++|++|++++|.++.+
T Consensus        59 ~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  132 (390)
T 3o6n_A           59 KLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL  132 (390)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             hCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC
Confidence            467778889999999999887643      113345666 8899999998888888765 3 788899999999988888


Q ss_pred             cccc-cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC--------
Q 014575           85 WDDV-EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL--------  155 (422)
Q Consensus        85 ~~~~-~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l--------  155 (422)
                      +.++ ..+++|+++....+.+...  .+..++.+++|++|++++|..... +  +..+++|+.|++++|...        
T Consensus       133 ~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L  207 (390)
T 3o6n_A          133 PRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAV  207 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred             CHHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcc
Confidence            7764 6777777774433333222  223366778888888888754432 2  223444444444443211        


Q ss_pred             ----------CCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCC
Q 014575          156 ----------KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSL  225 (422)
Q Consensus       156 ----------~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l  225 (422)
                                ..+|. ...++|+.|++++|.++.+ +.+..+++|++|++++|...+..|..+..+++|+.|++++| .+
T Consensus       208 ~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l  284 (390)
T 3o6n_A          208 EELDASHNSINVVRG-PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RL  284 (390)
T ss_dssp             SEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CC
T ss_pred             eEEECCCCeeeeccc-cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cC
Confidence                      11221 1234677778887777765 36777888888888887666666777888888888888875 44


Q ss_pred             CCCCcccCCCCCCCEEeccCcccccccc
Q 014575          226 KSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       226 ~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      ..+|..+..+++|+.|++++|.++.+|.
T Consensus       285 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~  312 (390)
T 3o6n_A          285 VALNLYGQPIPTLKVLDLSHNHLLHVER  312 (390)
T ss_dssp             CEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             cccCcccCCCCCCCEEECCCCcceecCc
Confidence            5566666777888888888888877764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=4.9e-22  Score=208.02  Aligned_cols=239  Identities=18%  Similarity=0.157  Sum_probs=155.0

Q ss_pred             eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCcccc
Q 014575            7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQ   83 (422)
Q Consensus         7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~   83 (422)
                      ..+.+.+|.++++|++|++++|.+.      ...|..+.. ++|++|++++|.+..+ |..| .+++|++|++++|.++.
T Consensus        46 ~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           46 PTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             SEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             CcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence            3456778888888888888887642      124566666 7788888888877766 3344 67778888888877777


Q ss_pred             c-cccccCCcchHHHHHhhccCCCCCCc----------------------chhhhcCCCCc--EEeccCCCCCccccccC
Q 014575           84 L-WDDVEHNGKLKQIISRACNFFTKSPN----------------------HSLTLHLDKLV--NLNLNNCKSLRILPAGI  138 (422)
Q Consensus        84 l-~~~~~~l~~L~~l~~~~~~~~~~~~~----------------------~~li~~l~~L~--~L~L~~~~~l~~lp~~i  138 (422)
                      + +..+..+++|+++....+.+......                      +..++.+++|+  .|++++|...+..|..+
T Consensus       120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~  199 (606)
T 3t6q_A          120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF  199 (606)
T ss_dssp             GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred             CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence            5 34556666666663333322221111                      11244455555  45555554333333221


Q ss_pred             CCCC----------------------------------------------------CCCEEEeeCCCCCCCCc-CCCCCC
Q 014575          139 FRLE----------------------------------------------------FLKELDLWGCSKLKTLP-EISSAG  165 (422)
Q Consensus       139 ~~l~----------------------------------------------------~L~~L~Ls~~~~l~~~p-~~~~l~  165 (422)
                       ...                                                    +|+.|++++|......+ .+..++
T Consensus       200 -~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~  278 (606)
T 3t6q_A          200 -DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS  278 (606)
T ss_dssp             -TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred             -hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence             111                                                    34444444444333333 277788


Q ss_pred             CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcc-cCCCCCCCEEecc
Q 014575          166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDE-LGNLEALDSLIAE  244 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~-~~~l~~L~~L~l~  244 (422)
                      +|++|++++|.++++|..++.+++|++|++++|...+..|..+..+++|+.|++++|...+.+|.. ++.+++|+.|+++
T Consensus       279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  358 (606)
T 3t6q_A          279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS  358 (606)
T ss_dssp             TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred             CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence            889999998888888888888888999999887766666777888888888888888777666654 6777888888888


Q ss_pred             Cccccccc
Q 014575          245 GTAIREVY  252 (422)
Q Consensus       245 ~n~l~~lp  252 (422)
                      +|.++.++
T Consensus       359 ~n~l~~~~  366 (606)
T 3t6q_A          359 HDDIETSD  366 (606)
T ss_dssp             SSCCCEEE
T ss_pred             CCcccccc
Confidence            88776653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=4.3e-23  Score=217.81  Aligned_cols=212  Identities=12%  Similarity=0.070  Sum_probs=140.9

Q ss_pred             ccCCCCC-CCeeEEEecCCCCCC------------------CCCCCC---CCCceEEEccCCcccc-ccccccCCcchHH
Q 014575           40 YLVGPGF-AEVRYLHWYGYPLKS------------------LPSNIH---PEKLVSIEMPHGNIQQ-LWDDVEHNGKLKQ   96 (422)
Q Consensus        40 lp~~l~~-~~Lr~L~l~~~~l~~------------------lP~~~~---~~~L~~L~L~~~~l~~-l~~~~~~l~~L~~   96 (422)
                      +|..+.. ++|++|++++|.+..                  +|..+.   +++|++|++++|.+.+ ++..+..+++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            5666655 777777777777776                  777654   6777777777777654 4556666777766


Q ss_pred             HHHhhccCCCCCCcchhhhcC------CCCcEEeccCCCCCccccc--cCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcC
Q 014575           97 IISRACNFFTKSPNHSLTLHL------DKLVNLNLNNCKSLRILPA--GIFRLEFLKELDLWGCSKLKTLPEISSAGNIE  168 (422)
Q Consensus        97 l~~~~~~~~~~~~~~~li~~l------~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~  168 (422)
                      +....+........|..++.+      ++|++|++++|... .+|.  .+.++++|++|++++|...+.+|.++.+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence            633332211110223334444      77777777777544 6776  67777777777777776655666666777777


Q ss_pred             EEEeeCccCcccCccccCCCC-CCEEecCCCCCCCcccccccCCC--CCcEEEccCCCCCCCCCcccC-------CCCCC
Q 014575          169 VMYLNGTAIEELPSSIECLSR-LSALYLDNCKRLKSLPSSLCKLN--SLNFIYLRWCSSLKSLPDELG-------NLEAL  238 (422)
Q Consensus       169 ~L~L~~n~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~Ls~c~~l~~lp~~~~-------~l~~L  238 (422)
                      +|+|++|.++.+|..+..+++ |+.|++++|. +..+|..+..++  +|+.|++++|...+.+|..+.       .+++|
T Consensus       357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             EEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred             EEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence            777777777777777777777 7777777755 336777665544  677777777777776776666       66677


Q ss_pred             CEEeccCcccccccc
Q 014575          239 DSLIAEGTAIREVYF  253 (422)
Q Consensus       239 ~~L~l~~n~l~~lp~  253 (422)
                      +.|++++|.++.+|.
T Consensus       436 ~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          436 SSINLSNNQISKFPK  450 (636)
T ss_dssp             EEEECCSSCCCSCCT
T ss_pred             CEEECcCCccCcCCH
Confidence            777777777776664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=3.3e-22  Score=194.06  Aligned_cols=231  Identities=19%  Similarity=0.159  Sum_probs=181.8

Q ss_pred             eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccc
Q 014575            7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLW   85 (422)
Q Consensus         7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~   85 (422)
                      ..+.+.+|.++++|++|++++|.+.      ...|..+.. ++|++|++++|.+..+|..+. ++|++|++++|.+..++
T Consensus        67 ~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~  139 (332)
T 2ft3_A           67 SELRKDDFKGLQHLYALVLVNNKIS------KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVP  139 (332)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCC------EECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCC
T ss_pred             CccCHhHhhCCCCCcEEECCCCccC------ccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccC
Confidence            3566788999999999999988643      124666776 899999999999999998775 79999999999999887


Q ss_pred             cc-ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCC
Q 014575           86 DD-VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISS  163 (422)
Q Consensus        86 ~~-~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~  163 (422)
                      .. +..+++|+.+....+.+......+..+..+ +|++|++++|. +..+|..+.  ++|+.|++++|......+ .+..
T Consensus       140 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~  215 (332)
T 2ft3_A          140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLR  215 (332)
T ss_dssp             SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTT
T ss_pred             HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcC
Confidence            64 677888887744443332222333335566 89999999985 455776553  799999999998766665 5899


Q ss_pred             CCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCC------CC
Q 014575          164 AGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGN------LE  236 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~------l~  236 (422)
                      +++|+.|+|++|.++.++. .+..+++|+.|++++| .+..+|..+..+++|+.|++++|+..+.-+..+..      ..
T Consensus       216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  294 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA  294 (332)
T ss_dssp             CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred             CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence            9999999999999998875 7899999999999996 46699999999999999999997655444444443      36


Q ss_pred             CCCEEeccCcccc
Q 014575          237 ALDSLIAEGTAIR  249 (422)
Q Consensus       237 ~L~~L~l~~n~l~  249 (422)
                      +|+.|++++|.+.
T Consensus       295 ~l~~L~l~~N~~~  307 (332)
T 2ft3_A          295 YYNGISLFNNPVP  307 (332)
T ss_dssp             CBSEEECCSSSSC
T ss_pred             cccceEeecCccc
Confidence            7899999999887

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.88  E-value=4.1e-22  Score=208.59  Aligned_cols=236  Identities=15%  Similarity=0.127  Sum_probs=153.8

Q ss_pred             eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccc-cc
Q 014575            9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQ-QL   84 (422)
Q Consensus         9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~-~l   84 (422)
                      +.+.+|.++++|+.|++++|.+.       .+|.++.. ++|++|++++|.+..++. .+ .+++|++|++++|.+. .+
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred             cCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence            44556777777777777776532       25666655 677777777777766543 33 5667777777777665 23


Q ss_pred             ccc-ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-C-C
Q 014575           85 WDD-VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-E-I  161 (422)
Q Consensus        85 ~~~-~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~-~  161 (422)
                      +.+ +..+++|+++....+.+......+..++.+++|++|++++|...+..|..+.++++|+.|++++|......| . +
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  421 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF  421 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence            332 455666665533333332222112336677777777777776666666667777778888887776655544 2 6


Q ss_pred             CCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCc---ccccccCCCCCcEEEccCCCCCCCCCcccCCCCC
Q 014575          162 SSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKS---LPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA  237 (422)
Q Consensus       162 ~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~---lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~  237 (422)
                      ..+++|+.|++++|.++.. |..++.+++|++|++++|...+.   .+..+..+++|+.|++++|...+..|..++.+++
T Consensus       422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  501 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM  501 (606)
T ss_dssp             TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence            7777788888888777744 45667777888888887665442   2245677778888888877766666777777788


Q ss_pred             CCEEeccCcccccc
Q 014575          238 LDSLIAEGTAIREV  251 (422)
Q Consensus       238 L~~L~l~~n~l~~l  251 (422)
                      |+.|++++|.++..
T Consensus       502 L~~L~Ls~N~l~~~  515 (606)
T 3t6q_A          502 MNHVDLSHNRLTSS  515 (606)
T ss_dssp             CCEEECCSSCCCGG
T ss_pred             CCEEECCCCccCcC
Confidence            88888888877654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=1.6e-22  Score=213.37  Aligned_cols=228  Identities=16%  Similarity=0.178  Sum_probs=151.6

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCC-ceEEEccCCcccccccccc
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEK-LVSIEMPHGNIQQLWDDVE   89 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~-L~~L~L~~~~l~~l~~~~~   89 (422)
                      +|.+|++|+.|++++|.+.+      .+| .+.. ++|++|++++|.+..+|..+ .+++ |++|++++|.++.++..+.
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~  397 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEG------KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD  397 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEE------ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred             hhccCCCCCEEeCcCCcCcc------chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence            67777777777777765432      355 4444 77777777777777777766 5666 7777777777776665544


Q ss_pred             CCc--chHHHHHhhccCCCCCCcchhhh-------cCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCc
Q 014575           90 HNG--KLKQIISRACNFFTKSPNHSLTL-------HLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLP  159 (422)
Q Consensus        90 ~l~--~L~~l~~~~~~~~~~~~~~~li~-------~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p  159 (422)
                      .+.  +|+.+....+.+.+.  .+..+.       .+++|++|+|++|... .+|..+. .+++|+.|+|++|... .+|
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~  473 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIP  473 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred             hcccCccCEEECcCCcCCCc--chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence            433  555553322222211  111122       5567888888887544 5665443 4778888888887655 555


Q ss_pred             C--CCC-------CCCcCEEEeeCccCcccCcccc--CCCCCCEEecCCCCCCCcccccccCCCCCcEEEc------cCC
Q 014575          160 E--ISS-------AGNIEVMYLNGTAIEELPSSIE--CLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYL------RWC  222 (422)
Q Consensus       160 ~--~~~-------l~~L~~L~L~~n~i~~lp~~i~--~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L------s~c  222 (422)
                      .  +..       +++|+.|+|++|.++.+|..+.  .+++|+.|+|++|+..+ +|..+..+++|+.|+|      ++|
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N  552 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN  552 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred             HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence            2  222       2278888888888888887776  78888888888865554 7888888888888888      445


Q ss_pred             CCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          223 SSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       223 ~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +..+.+|..++.+++|+.|++++|.+..+|
T Consensus       553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip  582 (636)
T 4eco_A          553 RTLREWPEGITLCPSLTQLQIGSNDIRKVN  582 (636)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred             cccccChHHHhcCCCCCEEECCCCcCCccC
Confidence            567778888888888888888888776554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=2.2e-21  Score=196.35  Aligned_cols=210  Identities=18%  Similarity=0.161  Sum_probs=176.9

Q ss_pred             ccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccc-ccccCCcchHHHHHhhccCCCCCCcchhhhc
Q 014575           40 YLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLW-DDVEHNGKLKQIISRACNFFTKSPNHSLTLH  116 (422)
Q Consensus        40 lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~  116 (422)
                      +|.++. ++|++|++++|.+..++. .| .+++|++|+|++|+|..+. ..+..+++|++|....+.+...  .+..+..
T Consensus        69 iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~  145 (452)
T 3zyi_A           69 VPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEY  145 (452)
T ss_dssp             CCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSS
T ss_pred             cCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--Chhhhcc
Confidence            554433 789999999999998855 45 8999999999999999876 4567788888885444443322  2334778


Q ss_pred             CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEe
Q 014575          117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALY  194 (422)
Q Consensus       117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~  194 (422)
                      +++|++|+|++|......+..+.++++|+.|++++|..++.++  .+..+++|++|+|++|.++.+| .+..+++|+.|+
T Consensus       146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  224 (452)
T 3zyi_A          146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELE  224 (452)
T ss_dssp             CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEE
T ss_pred             cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEE
Confidence            9999999999997655555578899999999999998888887  4889999999999999999997 588999999999


Q ss_pred             cCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          195 LDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       195 L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      |++|...+..|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.++.+|.
T Consensus       225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence            99988777778899999999999999998888888899999999999999999987764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=3.1e-21  Score=183.01  Aligned_cols=137  Identities=22%  Similarity=0.249  Sum_probs=115.3

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCc-cccCCCCCC
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPS-SIECLSRLS  191 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~  191 (422)
                      +..+++|++|++++|...+..|..+.++++|++|++++|......+. +..+++|++|+|++|.++.+|. .+..+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            66788999999999987777677788899999999999876655443 8889999999999999998886 488899999


Q ss_pred             EEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575          192 ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       192 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      .|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+..
T Consensus       181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            99999987777778889999999999999976665555668889999999999998763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.2e-21  Score=210.10  Aligned_cols=231  Identities=13%  Similarity=0.104  Sum_probs=168.7

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCC-ceEEEccCCccccccccc
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEK-LVSIEMPHGNIQQLWDDV   88 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~-L~~L~L~~~~l~~l~~~~   88 (422)
                      .+|.+|++|+.|++++|.+.       .+| .+.. ++|++|++++|.+..+|..+ .+++ |++|+|++|++..++..+
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~-------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~  638 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVR-------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF  638 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCC-------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred             hhhhcCCCCCEEECCCCCcc-------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence            48999999999999998753       366 6666 89999999999999999877 6777 999999999999887665


Q ss_pred             cCCcc--hHHHHHhhccCCCCC-Ccchhhh--cCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcC-C
Q 014575           89 EHNGK--LKQIISRACNFFTKS-PNHSLTL--HLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPE-I  161 (422)
Q Consensus        89 ~~l~~--L~~l~~~~~~~~~~~-~~~~li~--~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~-~  161 (422)
                      ..+..  |+.+....+.+.+.. ..+.-++  .+++|+.|+|++|... .+|..+. .+++|+.|+|++|... .+|. +
T Consensus       639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            55433  666633333332211 0110112  3447888888887544 6676554 6788888888887654 5552 2


Q ss_pred             CC--------CCCcCEEEeeCccCcccCcccc--CCCCCCEEecCCCCCCCcccccccCCCCCcEEEccC------CCCC
Q 014575          162 SS--------AGNIEVMYLNGTAIEELPSSIE--CLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRW------CSSL  225 (422)
Q Consensus       162 ~~--------l~~L~~L~L~~n~i~~lp~~i~--~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~------c~~l  225 (422)
                      ..        +++|+.|+|++|.|+.+|..+.  .+++|+.|+|++|...+ +|..+..+++|+.|+|++      |...
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred             hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence            22        2378888888888888888876  88888888888865444 788888888888888865      6667


Q ss_pred             CCCCcccCCCCCCCEEeccCcccccccc
Q 014575          226 KSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       226 ~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +.+|..+..+++|+.|++++|.+..+|.
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~  823 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSNDIRKVDE  823 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred             ccChHHHhcCCCCCEEECCCCCCCccCH
Confidence            7888888888888888888888877775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.3e-21  Score=204.94  Aligned_cols=231  Identities=12%  Similarity=0.086  Sum_probs=146.2

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQL   84 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l   84 (422)
                      .+++..|.++++|++|++++|.+..      ..|..+.. ++|++|++++|.+..+|+..  .+++|++|+|++|.|..+
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  138 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL  138 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CcCHHHHccCCCCcEEECCCCCCCC------CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence            4777888889999999998876431      13345666 88888888888888887654  788888888888888888


Q ss_pred             cccc-cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC--------
Q 014575           85 WDDV-EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL--------  155 (422)
Q Consensus        85 ~~~~-~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l--------  155 (422)
                      +..+ ..+++|++|....+.+..  ..+..++.+++|++|+|++|...+. +  +..+++|+.|++++|...        
T Consensus       139 ~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~L  213 (597)
T 3oja_B          139 PRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAV  213 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred             CHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCchh
Confidence            7764 677777777444333322  2223367778888888888754432 2  223344444444333211        


Q ss_pred             ----------CCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCC
Q 014575          156 ----------KTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       156 ----------~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~  224 (422)
                                ..+| .+  .++|+.|+|++|.++.. ..++.+++|+.|+|++|...+..|..++.+++|+.|+|++|. 
T Consensus       214 ~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-  289 (597)
T 3oja_B          214 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-  289 (597)
T ss_dssp             SEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-
T ss_pred             heeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-
Confidence                      1111 11  13566666666666653 456666777777777766555556666667777777776643 


Q ss_pred             CCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          225 LKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       225 l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +..+|..+..+++|+.|++++|.++.+|.
T Consensus       290 l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~  318 (597)
T 3oja_B          290 LVALNLYGQPIPTLKVLDLSHNHLLHVER  318 (597)
T ss_dssp             CCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCcccccCCCCcEEECCCCCCCccCc
Confidence            34456656666677777777776666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=2.3e-21  Score=192.20  Aligned_cols=234  Identities=15%  Similarity=0.094  Sum_probs=169.3

Q ss_pred             eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccc
Q 014575            7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQ   83 (422)
Q Consensus         7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~   83 (422)
                      ..+.+.+|.++++|++|++++|.+...      .|..+.. ++|++|++++|.+..+|...  .+++|++|++++|++..
T Consensus        82 ~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           82 EEIDTYAFAYAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             cccChhhccCCCCcCEEECCCCCCCcC------CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            346677999999999999999875432      3455666 99999999999999999874  78999999999999988


Q ss_pred             ccc-cccCCcchHHHHHhhccCCCCC--Ccchh------------hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEE
Q 014575           84 LWD-DVEHNGKLKQIISRACNFFTKS--PNHSL------------TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELD  148 (422)
Q Consensus        84 l~~-~~~~l~~L~~l~~~~~~~~~~~--~~~~l------------i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~  148 (422)
                      +.+ .+..+++|+++....+.+....  ..+.+            +...++|+.|++++|. +..+|..  ..++|+.|+
T Consensus       156 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~  232 (390)
T 3o6n_A          156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGP--VNVELTILK  232 (390)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECC--CCSSCCEEE
T ss_pred             cChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCe-eeecccc--ccccccEEE
Confidence            754 4677788887743333332221  01100            1222345555555553 2333432  346788888


Q ss_pred             eeCCCCCCCCcCCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575          149 LWGCSKLKTLPEISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS  227 (422)
Q Consensus       149 Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~  227 (422)
                      +++|.. ...+.+..+++|++|+|++|.++.+ |..+..+++|+.|++++| .+..+|..+..+++|+.|++++| .+..
T Consensus       233 l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~  309 (390)
T 3o6n_A          233 LQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLH  309 (390)
T ss_dssp             CCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred             CCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-ccee
Confidence            888764 4457788888888888888888865 677888888888888885 45667777778888888888886 4557


Q ss_pred             CCcccCCCCCCCEEeccCccccccc
Q 014575          228 LPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       228 lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +|..+..+++|+.|++++|.++.+|
T Consensus       310 ~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          310 VERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             cCccccccCcCCEEECCCCccceeC
Confidence            7777777888888888888887765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.1e-21  Score=210.25  Aligned_cols=218  Identities=11%  Similarity=0.051  Sum_probs=164.7

Q ss_pred             hhCCCCCceEEEecCCCCCCCceeEEccC--CCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccccccccc
Q 014575           14 FTKMCKLRFLKFYNSKDDGENKCKVSYLV--GPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVE   89 (422)
Q Consensus        14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~--~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~   89 (422)
                      |..+++|+.|++++|.+.       .+|.  .+.. ++|++|++++|.+..+| .+ .+++|++|+|++|.+..++..+.
T Consensus       544 ~~~l~~L~~L~Ls~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~  615 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLE-------EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFC  615 (876)
T ss_dssp             TTTTTTCCEEECCSSCCC-------BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSC
T ss_pred             ccccCCccEEEeeCCcCC-------ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHh
Confidence            344559999999988753       3676  6666 88999999999988888 55 78899999999999988887787


Q ss_pred             CCcc-hHHHHHhhccCCCCCCcchhhhcCC--CCcEEeccCCCCCccccc---cCC--CCCCCCEEEeeCCCCCCCCc-C
Q 014575           90 HNGK-LKQIISRACNFFTKSPNHSLTLHLD--KLVNLNLNNCKSLRILPA---GIF--RLEFLKELDLWGCSKLKTLP-E  160 (422)
Q Consensus        90 ~l~~-L~~l~~~~~~~~~~~~~~~li~~l~--~L~~L~L~~~~~l~~lp~---~i~--~l~~L~~L~Ls~~~~l~~~p-~  160 (422)
                      .+++ |+.|....+.+.   ..+..+..++  +|+.|+|++|...+.+|.   .+.  .+++|+.|+|++|... .+| .
T Consensus       616 ~l~~~L~~L~Ls~N~L~---~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~  691 (876)
T 4ecn_A          616 AFTDQVEGLGFSHNKLK---YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTE  691 (876)
T ss_dssp             EECTTCCEEECCSSCCC---SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHH
T ss_pred             hccccCCEEECcCCCCC---cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHH
Confidence            7877 887744444333   2233344444  489999999887766553   222  3458999999998755 566 3


Q ss_pred             -CCCCCCcCEEEeeCccCcccCccccCCC--------CCCEEecCCCCCCCccccccc--CCCCCcEEEccCCCCCCCCC
Q 014575          161 -ISSAGNIEVMYLNGTAIEELPSSIECLS--------RLSALYLDNCKRLKSLPSSLC--KLNSLNFIYLRWCSSLKSLP  229 (422)
Q Consensus       161 -~~~l~~L~~L~L~~n~i~~lp~~i~~l~--------~L~~L~L~~~~~l~~lp~~l~--~l~~L~~L~Ls~c~~l~~lp  229 (422)
                       +..+++|+.|+|++|.|+.+|..+....        +|+.|+|++|+ +..+|..+.  .+++|+.|+|++|...+ +|
T Consensus       692 ~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp  769 (876)
T 4ecn_A          692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FP  769 (876)
T ss_dssp             HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred             HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence             4477889999999999998887664433        89999999864 458888887  88999999999876655 88


Q ss_pred             cccCCCCCCCEEeccC
Q 014575          230 DELGNLEALDSLIAEG  245 (422)
Q Consensus       230 ~~~~~l~~L~~L~l~~  245 (422)
                      ..+..+++|+.|++++
T Consensus       770 ~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          770 TQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             CGGGGCTTCCEEECCC
T ss_pred             hhhhcCCCCCEEECCC
Confidence            8888899999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=3e-21  Score=194.60  Aligned_cols=210  Identities=17%  Similarity=0.173  Sum_probs=177.3

Q ss_pred             ccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccc-ccccCCcchHHHHHhhccCCCCCCcchhhhc
Q 014575           40 YLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLW-DDVEHNGKLKQIISRACNFFTKSPNHSLTLH  116 (422)
Q Consensus        40 lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~  116 (422)
                      +|.++. .++++|++++|.+..++. .| .+++|++|+|++|.|..+. ..+..+++|++|....+.+....  +..+..
T Consensus        58 iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~  134 (440)
T 3zyj_A           58 VPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFVY  134 (440)
T ss_dssp             CCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCS
T ss_pred             CCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--HhHhhc
Confidence            555444 889999999999999875 44 8899999999999999876 45677888888854444443322  234788


Q ss_pred             CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEe
Q 014575          117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALY  194 (422)
Q Consensus       117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~  194 (422)
                      +++|++|+|++|......+..+.++++|+.|++++|..++.++  .+..+++|++|+|++|.++.+|. +..+++|+.|+
T Consensus       135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~  213 (440)
T 3zyj_A          135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELD  213 (440)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEE
T ss_pred             cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEE
Confidence            9999999999997665555578899999999999988888877  48899999999999999999984 88999999999


Q ss_pred             cCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          195 LDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       195 L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      |++|...+..|..+..+++|+.|++++|...+..|..+..+++|+.|+|++|.++.+|.
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence            99987776668889999999999999988888888889999999999999999998774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=6.9e-22  Score=206.89  Aligned_cols=227  Identities=14%  Similarity=0.070  Sum_probs=139.4

Q ss_pred             hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575           14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG   92 (422)
Q Consensus        14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~   92 (422)
                      |..+++|+.|+++++.+.       .+| .+.. ++|++|++.+|.++.+|.. .+++|++|++++|+..... .+..++
T Consensus       281 ~~~l~~L~~L~l~~~~~~-------~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~  350 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIK-------YLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF-KKVALP  350 (606)
T ss_dssp             CGGGTTCSEEEEESCCCC-------CCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCT
T ss_pred             cccCCCCCEEEecCccch-------hhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch-hhccCC
Confidence            788899999999887642       244 4555 7888899888888888844 7777888888777433322 344556


Q ss_pred             chHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEE
Q 014575           93 KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVM  170 (422)
Q Consensus        93 ~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L  170 (422)
                      +|+++....+.+......+..+..+++|++|++++|. +..+|..+..+++|+.|++++|...+..|  .+..+++|+.|
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            6665533322222222123335666666666666664 33455556666666666666665555444  35566666666


Q ss_pred             EeeCccCcc-cCccccCCCCCCEEecCCCCCCC-cccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575          171 YLNGTAIEE-LPSSIECLSRLSALYLDNCKRLK-SLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       171 ~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l  248 (422)
                      ++++|.++. .|..++.+++|++|++++|...+ .+|..+..+++|+.|++++|...+..|..++.+++|+.|++++|.+
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            666666653 34556666666666666655444 2555566666666666666655555556666666666666666666


Q ss_pred             ccc
Q 014575          249 REV  251 (422)
Q Consensus       249 ~~l  251 (422)
                      +.+
T Consensus       510 ~~~  512 (606)
T 3vq2_A          510 LFL  512 (606)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.86  E-value=2.1e-21  Score=203.27  Aligned_cols=230  Identities=12%  Similarity=0.074  Sum_probs=186.6

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc---ccccc
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL---WDDVE   89 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l---~~~~~   89 (422)
                      .|.++++|+.|++++|.+ .      .+| .+..++|++|++++|....-.....+++|++|++++|.+...   +..+.
T Consensus       302 ~l~~~~~L~~L~l~~n~l-~------~lp-~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  373 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQL-K------QFP-TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL  373 (606)
T ss_dssp             CCCTTCCCSEEEEESCCC-S------SCC-CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred             hccccccCCEEEcccccC-c------ccc-cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence            678888999999999875 2      255 343389999999999533222333788999999999999876   45667


Q ss_pred             CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCc
Q 014575           90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSAGNI  167 (422)
Q Consensus        90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L  167 (422)
                      .+++|+.+....+.+..   .+..+..+++|+.|++++|...+..| ..+.++++|++|++++|......| .+..+++|
T Consensus       374 ~~~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  450 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL  450 (606)
T ss_dssp             CCSCCCEEECCSCSEEE---ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             cCCcccEeECCCCcccc---chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence            77888877433333222   12337789999999999998777776 568899999999999998877777 58899999


Q ss_pred             CEEEeeCccCcc--cCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 014575          168 EVMYLNGTAIEE--LPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG  245 (422)
Q Consensus       168 ~~L~L~~n~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~  245 (422)
                      ++|++++|.++.  +|..++.+++|+.|++++|...+..|..+..+++|+.|++++|+..+..|..++.+++|+.|++++
T Consensus       451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  530 (606)
T 3vq2_A          451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF  530 (606)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence            999999999985  788899999999999999887777788899999999999999988888899999999999999999


Q ss_pred             cccccccc
Q 014575          246 TAIREVYF  253 (422)
Q Consensus       246 n~l~~lp~  253 (422)
                      |+++.+|.
T Consensus       531 N~l~~~p~  538 (606)
T 3vq2_A          531 NRIETSKG  538 (606)
T ss_dssp             SCCCCEES
T ss_pred             CcCcccCH
Confidence            99987664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=192.13  Aligned_cols=224  Identities=17%  Similarity=0.156  Sum_probs=132.4

Q ss_pred             CCceEEEecCCCCCCCceeEEccC-CCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCcccccccc-ccCCcc
Q 014575           19 KLRFLKFYNSKDDGENKCKVSYLV-GPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDD-VEHNGK   93 (422)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~lp~-~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~   93 (422)
                      +|+.|++++|.+.       .++. .+.. ++|++|++++|.+..++.. | .+++|++|++++|+++.++.. +..+++
T Consensus        53 ~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  125 (353)
T 2z80_A           53 AVKSLDLSNNRIT-------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS  125 (353)
T ss_dssp             TCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred             cCcEEECCCCcCc-------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence            5666666665432       1222 3444 6666666666666655432 3 556666666666666655443 445555


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccc-cccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEE
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL-PAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY  171 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~  171 (422)
                      |+++....+.+..... ...+..+++|++|++++|..++.+ |..+.++++|+.|++++|...+..| .+..+++|++|+
T Consensus       126 L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             CSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             CCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence            5555333332222111 012455666666666666433333 3445566666666666665554444 466666666666


Q ss_pred             eeCccCcccCccc-cCCCCCCEEecCCCCCCC-------------------------------cccccccCCCCCcEEEc
Q 014575          172 LNGTAIEELPSSI-ECLSRLSALYLDNCKRLK-------------------------------SLPSSLCKLNSLNFIYL  219 (422)
Q Consensus       172 L~~n~i~~lp~~i-~~l~~L~~L~L~~~~~l~-------------------------------~lp~~l~~l~~L~~L~L  219 (422)
                      +++|.++.+|..+ ..+++|+.|++++|...+                               .+|..+..+++|+.|++
T Consensus       205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L  284 (353)
T 2z80_A          205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF  284 (353)
T ss_dssp             EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence            6666666655543 345666666666654332                               35666788899999999


Q ss_pred             cCCCCCCCCCccc-CCCCCCCEEeccCcccccc
Q 014575          220 RWCSSLKSLPDEL-GNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       220 s~c~~l~~lp~~~-~~l~~L~~L~l~~n~l~~l  251 (422)
                      ++|. +..+|..+ +.+++|+.|++++|.+...
T Consensus       285 s~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          285 SRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCC-CCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            9865 45777764 8889999999999988743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=3.4e-21  Score=209.58  Aligned_cols=111  Identities=18%  Similarity=0.155  Sum_probs=69.5

Q ss_pred             CCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEcc
Q 014575          143 FLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR  220 (422)
Q Consensus       143 ~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls  220 (422)
                      +|+.|++++|......| .+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|...+..|..+..+++|+.|+++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            44444444444333333 355666777777777777655 3456677777777777765555556667777777777777


Q ss_pred             CCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          221 WCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       221 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +|...+..+..+..+++|+.|++++|.++.++.
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  379 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF  379 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence            765544444556677777777777777766554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=5.2e-21  Score=186.37  Aligned_cols=223  Identities=12%  Similarity=0.129  Sum_probs=154.2

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCC-CCCCCCCCCCCceEEEccCCcccccccccc
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPL-KSLPSNIHPEKLVSIEMPHGNIQQLWDDVE   89 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l-~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~   89 (422)
                      ++|.++++|++|++++|.+..       ++. +.. ++|++|++++|+. ..++....+++|++|++++|.+..+.. +.
T Consensus       104 ~~~~~l~~L~~L~l~~n~i~~-------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~  174 (347)
T 4fmz_A          104 SALQNLTNLRELYLNEDNISD-------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IA  174 (347)
T ss_dssp             GGGTTCTTCSEEECTTSCCCC-------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred             hHHcCCCcCCEEECcCCcccC-------chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hc
Confidence            469999999999999987542       222 444 8888888888854 444443377888888888888877654 66


Q ss_pred             CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCE
Q 014575           90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV  169 (422)
Q Consensus        90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~  169 (422)
                      .+++|+.+....+.+.+..   . +..+++|+.|++++|.... ++. +..+++|++|++++|... .++.+..+++|++
T Consensus       175 ~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~  247 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDIS---P-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKIT-DLSPLANLSQLTW  247 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCG---G-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCE
T ss_pred             cCCCCCEEEccCCcccccc---c-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccC-CCcchhcCCCCCE
Confidence            6777776644433333222   1 5677778888888775443 333 667778888888887643 3444777778888


Q ss_pred             EEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          170 MYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       170 L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      |++++|.++.++ .+..+++|+.|++++|. +..+|. +..+++|+.|++++|...+..|..++.+++|+.|++++|.++
T Consensus       248 L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          248 LEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             EECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             EECCCCccCCCh-hHhcCCCcCEEEccCCc-cCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            888888777764 56777788888888764 444543 677778888888877766666677777778888888888777


Q ss_pred             cccc
Q 014575          250 EVYF  253 (422)
Q Consensus       250 ~lp~  253 (422)
                      .++.
T Consensus       325 ~~~~  328 (347)
T 4fmz_A          325 DIRP  328 (347)
T ss_dssp             CCGG
T ss_pred             cccC
Confidence            6654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=6.1e-21  Score=199.83  Aligned_cols=234  Identities=15%  Similarity=0.090  Sum_probs=169.3

Q ss_pred             eeeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCcccc
Q 014575            7 IYLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQ   83 (422)
Q Consensus         7 ~~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~   83 (422)
                      ..+.+.+|.++++|+.|+|++|.+.+.      .|..+.. ++|++|++++|.+..+|...  .+++|++|+|++|.+.+
T Consensus        88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B           88 EEIDTYAFAYAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCChHHhcCCCCCCEEECCCCcCCCC------CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence            346677999999999999999876432      3445566 99999999999999999874  78999999999999998


Q ss_pred             ccc-cccCCcchHHHHHhhccCCCCC--Ccchh------------hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEE
Q 014575           84 LWD-DVEHNGKLKQIISRACNFFTKS--PNHSL------------TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELD  148 (422)
Q Consensus        84 l~~-~~~~l~~L~~l~~~~~~~~~~~--~~~~l------------i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~  148 (422)
                      +++ .+..+++|+.|....+.+....  ..+++            +.....|+.|++++|. +..+|..+  .++|+.|+
T Consensus       162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~  238 (597)
T 3oja_B          162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPV--NVELTILK  238 (597)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCEEECSC--CSCCCEEE
T ss_pred             CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCc-cccccccc--CCCCCEEE
Confidence            765 4677888888744433333221  00100            1223344555555543 23333322  35788888


Q ss_pred             eeCCCCCCCCcCCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575          149 LWGCSKLKTLPEISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS  227 (422)
Q Consensus       149 Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~  227 (422)
                      |++|... ..+.+..+++|+.|+|++|.++.+ |..++.+++|+.|+|++| .+..+|..+..+++|+.|+|++|.. ..
T Consensus       239 L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l-~~  315 (597)
T 3oja_B          239 LQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LH  315 (597)
T ss_dssp             CCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCC-CC
T ss_pred             CCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCC-Cc
Confidence            8887644 456788888888888888888855 667888888888888885 4556777777788888888888644 47


Q ss_pred             CCcccCCCCCCCEEeccCccccccc
Q 014575          228 LPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       228 lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +|..+..+++|+.|++++|.+..+|
T Consensus       316 i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          316 VERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             cCcccccCCCCCEEECCCCCCCCcC
Confidence            7877788888888888888887765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=1.7e-20  Score=196.39  Aligned_cols=160  Identities=18%  Similarity=0.155  Sum_probs=90.0

Q ss_pred             CCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCC-cccccccCCCCC
Q 014575          139 FRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLK-SLPSSLCKLNSL  214 (422)
Q Consensus       139 ~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L  214 (422)
                      ..+++|+.++++++......+  .+..+++++.++++.|.++.+ |..+..++.|+.|++++|+... .+|..+..+++|
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            344555555555554433333  355666667777776666643 3345566666666666655433 345556666666


Q ss_pred             cEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc--cc---ccccccCCCCc----CCCccccccCcceeEEEec
Q 014575          215 NFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF--FQ---SSGRLLLPGNE----IPMWFSFQSLGSSSITLKM  285 (422)
Q Consensus       215 ~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~--f~---~~~~~~lpg~~----iP~wf~~~~~g~s~i~~~l  285 (422)
                      +.|+|++|...+..|..++.+++|++|+|++|+|+.+|.  |.   ....+.+.++.    +|.+|.+.. .+- -++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~~L-~~L~L  574 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSL-AFLNL  574 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC-TTC-CEEEC
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh-CcC-CEEEe
Confidence            666666665555556666666666666666666666543  21   11222233332    355554321 122 35677


Q ss_pred             CCCCCCCCCccceEE
Q 014575          286 PHAGWFSNNKVIGFA  300 (422)
Q Consensus       286 p~~~w~~~~~~~g~~  300 (422)
                      ..|+|.|++++..|.
T Consensus       575 ~~Np~~C~C~~~~~~  589 (635)
T 4g8a_A          575 TQNDFACTCEHQSFL  589 (635)
T ss_dssp             TTCCBCCSGGGHHHH
T ss_pred             eCCCCcccCCcHHHH
Confidence            777898988876664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=7e-21  Score=184.68  Aligned_cols=200  Identities=16%  Similarity=0.185  Sum_probs=95.0

Q ss_pred             CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccc-cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575           47 AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQL-WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL  123 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L  123 (422)
                      ++|++|++++|.+..+|. .| .+++|++|++++|+++.+ +..+..+++|+++....+.+......   +  .++|++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~--~~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN---L--PSSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS---C--CTTCCEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc---c--cccCCEE
Confidence            455555555555555543 23 555555555555555554 33444555555552222222211110   1  1445555


Q ss_pred             eccCCCCCccccccCCCCCCCCEEEeeCCCCCC--CCc-CCCCC--------------------CCcCEEEeeCccCccc
Q 014575          124 NLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK--TLP-EISSA--------------------GNIEVMYLNGTAIEEL  180 (422)
Q Consensus       124 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~p-~~~~l--------------------~~L~~L~L~~n~i~~l  180 (422)
                      ++++|...+..+..+.++++|+.|++++|....  ..| .+..+                    ++|++|++++|.++.+
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~  208 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI  208 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence            555554333223334455555555555544321  222 23333                    3555555555555544


Q ss_pred             C-ccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          181 P-SSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       181 p-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      + ..+..+++|+.|++++|...+..|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.++.+|
T Consensus       209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccC
Confidence            3 34555555555555554433333334555555555555554 23355555555555555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=1.5e-20  Score=183.09  Aligned_cols=222  Identities=13%  Similarity=0.167  Sum_probs=159.5

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      +|..+++|++|++++|.+..       ++. +.. ++|++|++++|.+..+|.-..+++|++|++++|.+..+.. +..+
T Consensus        61 ~~~~~~~L~~L~l~~n~i~~-------~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l  131 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGNQITD-------ISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANL  131 (347)
T ss_dssp             TGGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred             hhhhcCCccEEEccCCcccc-------chh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccC
Confidence            47778888888888776432       222 444 7777777777777776643366777777777777766544 4555


Q ss_pred             cchHHHHHhhccCC--------------------CCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeC
Q 014575           92 GKLKQIISRACNFF--------------------TKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWG  151 (422)
Q Consensus        92 ~~L~~l~~~~~~~~--------------------~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~  151 (422)
                      ++|+.+....+...                    .....+. +..+++|+.|++++|. +..++. +..+++|+.|++++
T Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYV  208 (347)
T ss_dssp             TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCS
T ss_pred             CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeeccc
Confidence            55555421111000                    0011111 6678888888888875 445555 77899999999999


Q ss_pred             CCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcc
Q 014575          152 CSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDE  231 (422)
Q Consensus       152 ~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~  231 (422)
                      |... .++.+..+++|++|++++|.++.+|. +..+++|++|++++|. +..++ .+..+++|+.|++++|.. ..+| .
T Consensus       209 n~l~-~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n~l-~~~~-~  282 (347)
T 4fmz_A          209 NQIT-DITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQI-SDIS-V  282 (347)
T ss_dssp             SCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCC-CCCG-G
T ss_pred             CCCC-CCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCCh-hHhcCCCcCEEEccCCcc-CCCh-h
Confidence            8644 44558889999999999999999987 8999999999999975 55565 488999999999999854 4454 5


Q ss_pred             cCCCCCCCEEeccCccccccc
Q 014575          232 LGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       232 ~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +..+++|+.|++++|.++..+
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGGG
T ss_pred             hcCCCCCCEEECcCCcCCCcC
Confidence            788999999999999998654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.8e-19  Score=169.70  Aligned_cols=198  Identities=20%  Similarity=0.146  Sum_probs=154.5

Q ss_pred             CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchHH
Q 014575           19 KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQ   96 (422)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~   96 (422)
                      +++.++++++.+.       .+|..+. .+|++|++++|.+..+|.. | .+++|++|++++|.++.++.+.        
T Consensus        17 ~~~~l~~~~~~l~-------~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~--------   80 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-------AIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI--------   80 (270)
T ss_dssp             TTTEEECTTSCCS-------SCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT--------
T ss_pred             CCCEEEccCCCCC-------ccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh--------
Confidence            5667777776532       1443332 6788888888888888763 4 7788888888888887665432        


Q ss_pred             HHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCc
Q 014575           97 IISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGT  175 (422)
Q Consensus        97 l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n  175 (422)
                                       +..+++|++|++++|......+..+.++++|++|++++|......+ .+..+++|++|+|++|
T Consensus        81 -----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           81 -----------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             -----------------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             -----------------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence                             5678899999999987655555566789999999999988666555 3789999999999999


Q ss_pred             cCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          176 AIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       176 ~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      .++.+|.. ++.+++|+.|++++|...+..+..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+.
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            99998875 789999999999997655444455888999999999998655544456888999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=1.5e-20  Score=180.12  Aligned_cols=208  Identities=18%  Similarity=0.177  Sum_probs=150.4

Q ss_pred             ccCCCCCCCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCccccc---cccccCCcchHHHHHhhccCCCCCCcchhh
Q 014575           40 YLVGPGFAEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQL---WDDVEHNGKLKQIISRACNFFTKSPNHSLT  114 (422)
Q Consensus        40 lp~~l~~~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~l~~~~~~~~~~~~~~~li  114 (422)
                      +|.++. ++|++|++++|.++.+|..+  .+++|++|++++|.+...   +.....+++|+++....+.+.   ..+..+
T Consensus        22 ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~---~l~~~~   97 (306)
T 2z66_A           22 VPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNF   97 (306)
T ss_dssp             CCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE---EEEEEE
T ss_pred             CCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc---cChhhc
Confidence            454332 78999999999999999874  889999999999999865   344455666666633222222   122226


Q ss_pred             hcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcc--cCccccCCCCC
Q 014575          115 LHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEE--LPSSIECLSRL  190 (422)
Q Consensus       115 ~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L  190 (422)
                      ..+++|++|++++|...+..+ ..+..+++|++|++++|......| .+..+++|++|+|++|.++.  +|..+..+++|
T Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A           98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            677888888888875443333 356678888888888887665555 36777888888888888874  67778888888


Q ss_pred             CEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          191 SALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       191 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      ++|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.++..
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            8888888765555577777888888888888766555555677788888888888877643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=7.2e-20  Score=173.60  Aligned_cols=180  Identities=21%  Similarity=0.300  Sum_probs=151.5

Q ss_pred             CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575           47 AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN  124 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~  124 (422)
                      ++|++|+++++.+..+|.. | .+++|++|++++|.++.+...                         .+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------------------------~~~~l~~L~~L~   86 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-------------------------AFTGLALLEQLD   86 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------------------------TTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-------------------------hcCCccCCCEEe
Confidence            6788888888888887754 4 678888888888888765332                         166788999999


Q ss_pred             ccCCCCCccc-cccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCC
Q 014575          125 LNNCKSLRIL-PAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRL  201 (422)
Q Consensus       125 L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l  201 (422)
                      +++|..++.+ |..+..+++|++|++++|......| .+..+++|++|++++|.++.+|.. ++.+++|+.|++++|+ +
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l  165 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-I  165 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-c
Confidence            9999755555 7778899999999999998776656 488999999999999999988864 7899999999999975 4


Q ss_pred             Ccccc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          202 KSLPS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       202 ~~lp~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      ..+|. .+..+++|+.|++++|...+..|..+..+++|+.|++++|.++.+|
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            55554 5889999999999999888888999999999999999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=6.1e-21  Score=183.71  Aligned_cols=198  Identities=16%  Similarity=0.178  Sum_probs=135.8

Q ss_pred             CCCCCceEEEecCCCCCCCceeEEccCCC--CC-CCeeEEEecCCCCCCCCCCC-CC-----CCceEEEccCCccccccc
Q 014575           16 KMCKLRFLKFYNSKDDGENKCKVSYLVGP--GF-AEVRYLHWYGYPLKSLPSNI-HP-----EKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus        16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l--~~-~~Lr~L~l~~~~l~~lP~~~-~~-----~~L~~L~L~~~~l~~l~~   86 (422)
                      ++++|++|++++|.+.+.      +|..+  .. ++|++|++++|.+..+|..+ .+     ++|++|+|++|++.++..
T Consensus        93 ~l~~L~~L~L~~n~l~~~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGT------APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC  166 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSC------CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred             CcCCccEEEccCCcccch------hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence            577777777777665433      45554  34 77777777777777766544 33     677777777777766543


Q ss_pred             cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc--ccccC--CCCCCCCEEEeeCCCCCCCCc---
Q 014575           87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI--LPAGI--FRLEFLKELDLWGCSKLKTLP---  159 (422)
Q Consensus        87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~--lp~~i--~~l~~L~~L~Ls~~~~l~~~p---  159 (422)
                      ..                         ++.+++|++|+|++|...+.  +|..+  .++++|++|++++|... .++   
T Consensus       167 ~~-------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~  220 (312)
T 1wwl_A          167 EQ-------------------------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME-TPSGVC  220 (312)
T ss_dssp             TT-------------------------CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC-CHHHHH
T ss_pred             HH-------------------------hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc-chHHHH
Confidence            21                         55677788888888876554  33344  67888888888887643 222   


Q ss_pred             -C-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCC
Q 014575          160 -E-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNL  235 (422)
Q Consensus       160 -~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l  235 (422)
                       . +..+++|++|+|++|.++..+  ..+..+++|++|+|++|. ++.+|..+.  ++|+.|++++|+. ..+|. +..+
T Consensus       221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~-~~~l  295 (312)
T 1wwl_A          221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRL-DRNPS-PDEL  295 (312)
T ss_dssp             HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCC-CSCCC-TTTS
T ss_pred             HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCC-CCChh-HhhC
Confidence             1 346678888888888887654  345667888888888865 447777665  7888888888644 44466 7778


Q ss_pred             CCCCEEeccCccccc
Q 014575          236 EALDSLIAEGTAIRE  250 (422)
Q Consensus       236 ~~L~~L~l~~n~l~~  250 (422)
                      ++|+.|++++|+++.
T Consensus       296 ~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          296 PQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CEEEEEECTTCTTTC
T ss_pred             CCCCEEeccCCCCCC
Confidence            888888888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=9.7e-20  Score=176.37  Aligned_cols=222  Identities=15%  Similarity=0.124  Sum_probs=173.0

Q ss_pred             CCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc-cccccCCcc
Q 014575           17 MCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL-WDDVEHNGK   93 (422)
Q Consensus        17 m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~   93 (422)
                      ..+|+.++++++.+.       .+|..+. ++|++|++++|.+..+|.. | .+++|++|++++|.+.++ +..+..+++
T Consensus        30 ~c~l~~l~~~~~~l~-------~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (330)
T 1xku_A           30 QCHLRVVQCSDLGLE-------KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK  101 (330)
T ss_dssp             EEETTEEECTTSCCC-------SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             cCCCeEEEecCCCcc-------ccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence            348999999876532       2454332 7899999999999999874 5 889999999999999987 566778888


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC--CCc-CCCCCCCcCEE
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK--TLP-EISSAGNIEVM  170 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~--~~p-~~~~l~~L~~L  170 (422)
                      |+++....+.+......     ..++|++|++++|...+..+..+.++++|+.|++++|....  ..+ .+..+++|++|
T Consensus       102 L~~L~Ls~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          102 LERLYLSKNQLKELPEK-----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             CCEEECCSSCCSBCCSS-----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCEEECCCCcCCccChh-----hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            88874433333322111     12689999999987666666667889999999999987642  333 57888899999


Q ss_pred             EeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575          171 YLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       171 ~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      ++++|.++.+|..+.  ++|+.|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+.|++++|.++.
T Consensus       177 ~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  254 (330)
T 1xku_A          177 RIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK  254 (330)
T ss_dssp             ECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred             ECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc
Confidence            999999999887664  789999999987666667888999999999999987766666678888999999999998886


Q ss_pred             ccc
Q 014575          251 VYF  253 (422)
Q Consensus       251 lp~  253 (422)
                      +|.
T Consensus       255 lp~  257 (330)
T 1xku_A          255 VPG  257 (330)
T ss_dssp             CCT
T ss_pred             CCh
Confidence            654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.83  E-value=6.1e-20  Score=186.13  Aligned_cols=212  Identities=16%  Similarity=0.094  Sum_probs=112.7

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      .+.++++|+.|++++|.+.+       +| ++.. ++|++|++++|.+..+| -..+++|++|++++|.++++.  +..+
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-------~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l  105 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-------MT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPL  105 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-------CT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred             ChhHcCCCCEEEccCCCccc-------Ch-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCC
Confidence            45556666666666655331       22 3333 56666666666666654 125556666666666666542  4555


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY  171 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~  171 (422)
                      ++|+++....+.+...   +  ++.+++|++|++++|...+ ++  +.++++|+.|++++|...+.+ .+..+++|+.|+
T Consensus       106 ~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEE
Confidence            5555553333322221   1  4455666666666654333 32  455666666666665544444 345555666666


Q ss_pred             eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      +++|.++.+|  ++.+++|+.|++++|.. ..++  ++.+++|+.|++++|+..+ +|  ++.+++|+.|++++|.++.+
T Consensus       177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l-~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          177 CSFNKITELD--VSQNKLLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CCSSCCCCCC--CTTCTTCCEEECCSSCC-SCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             CCCCccceec--cccCCCCCEEECcCCcC-Ceec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            6666666555  55555666666665432 2232  4555566666665543333 44  55555566666665555544


Q ss_pred             c
Q 014575          252 Y  252 (422)
Q Consensus       252 p  252 (422)
                      |
T Consensus       249 ~  249 (457)
T 3bz5_A          249 D  249 (457)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=2.8e-20  Score=175.51  Aligned_cols=176  Identities=15%  Similarity=0.087  Sum_probs=134.4

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ++|+.|++.++.+..++.-..+++|++|++++|.+..+. .                          +..+++|++|+++
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~--------------------------l~~l~~L~~L~L~   93 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-A--------------------------LKELTNLTYLILT   93 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-G--------------------------GTTCTTCCEEECT
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-h--------------------------hcCCCCCCEEECC
Confidence            778888888888888776557888888888888877642 1                          4567788888888


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      +|...+..+..+.++++|++|++++|......+. +..+++|++|+|++|.++.+|.. ++.+++|+.|++++|+..+..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            8866655555567888888888888876555443 67888888888888888877764 578888888888887655444


Q ss_pred             cccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          205 PSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       205 p~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      |..+..+++|+.|++++|...+..|..++.+++|+.|++++|.+.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            455678888888888887776666666788888888888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=193.53  Aligned_cols=125  Identities=14%  Similarity=0.072  Sum_probs=90.8

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCccccccccccCCcch
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKL   94 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L   94 (422)
                      ++|+.|++++|.+...      .|..+.. ++|++|++++|.+..+ |..| .+++|++|+|++|+|+.++..  .+++|
T Consensus        21 ~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNYISEL------WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCSSCCCCC------CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred             ccccEEECCCCccccc------ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence            7899999999875432      2344555 8999999999999988 5566 889999999999999998776  78888


Q ss_pred             HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC--CEEEeeCCCC
Q 014575           95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL--KELDLWGCSK  154 (422)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~~~~  154 (422)
                      +++....+.+... ..+..++.+++|++|++++|...+   ..+..+++|  +.|++++|..
T Consensus        93 ~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           93 KHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             cEEeccCCccccc-cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            8885544444332 233447888888888888876543   223445555  6666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=1.8e-19  Score=171.73  Aligned_cols=199  Identities=20%  Similarity=0.214  Sum_probs=162.6

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEH   90 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~   90 (422)
                      .+.++++|+.+++.++.+.       .+|.++. +++++|++++|.+..++.. | .+++|++|++++|.|+.++.    
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-------~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----   72 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-------ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----   72 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-------SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----
T ss_pred             cccccCCccEEECCCCCCC-------cCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----
Confidence            4678889999999887643       2454433 7889999999998887643 4 78899999999998887643    


Q ss_pred             CcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCE
Q 014575           91 NGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEV  169 (422)
Q Consensus        91 l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~  169 (422)
                                             .+.+++|++|++++|. +..+|..+..+++|++|++++|......| .+..+++|++
T Consensus        73 -----------------------~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           73 -----------------------DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             -----------------------CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             -----------------------CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence                                   1356789999999985 56888888899999999999998665555 4899999999


Q ss_pred             EEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCccccc-ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575          170 MYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       170 L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~  247 (422)
                      |+|++|+|+.+|.. +..+++|+.|+|++|+ +..+|.. +..+++|+.|+|++| .+..+|..+..+.+|+.+++++|+
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence            99999999988865 5789999999999965 5566654 578999999999985 566899999889999999999998


Q ss_pred             cc
Q 014575          248 IR  249 (422)
Q Consensus       248 l~  249 (422)
                      +.
T Consensus       207 ~~  208 (290)
T 1p9a_G          207 WL  208 (290)
T ss_dssp             BC
T ss_pred             cc
Confidence            76

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=1.5e-20  Score=181.26  Aligned_cols=221  Identities=14%  Similarity=0.075  Sum_probs=165.8

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccccccc
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVE   89 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~   89 (422)
                      ...|..+++|+.|++++|.+...      .|..+.. ++|++|++++|.+..+++-..+++|++|++++|.+++++..  
T Consensus        27 ~~~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--   98 (317)
T 3o53_A           27 ASLRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG--   98 (317)
T ss_dssp             HHHHTTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEEC--
T ss_pred             HHHhccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCC--
Confidence            34566677888888888765422      2334445 78888888888877666533777888888888888766432  


Q ss_pred             CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CC-CCCCCc
Q 014575           90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EI-SSAGNI  167 (422)
Q Consensus        90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~-~~l~~L  167 (422)
                        ++|+++....+.+....     ...+++|++|++++|...+..|..+..+++|++|++++|......| .+ ..+++|
T Consensus        99 --~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A           99 --PSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL  171 (317)
T ss_dssp             --TTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             --CCcCEEECCCCccCCcC-----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence              45554422222222111     2346789999999998777667778889999999999998666555 34 468899


Q ss_pred             CEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575          168 EVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       168 ~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~  247 (422)
                      ++|+|++|.++.+|... .+++|++|++++|+ +..+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.
T Consensus       172 ~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          172 EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CEEECTTSCCCEEECCC-CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             CEEECCCCcCccccccc-ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence            99999999999886544 58999999999964 5677777999999999999997 455789999999999999999999


Q ss_pred             cc
Q 014575          248 IR  249 (422)
Q Consensus       248 l~  249 (422)
                      +.
T Consensus       249 ~~  250 (317)
T 3o53_A          249 FH  250 (317)
T ss_dssp             CB
T ss_pred             cc
Confidence            87

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=3.6e-21  Score=198.92  Aligned_cols=128  Identities=13%  Similarity=0.049  Sum_probs=88.4

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL   84 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l   84 (422)
                      .+.+.+|.+|++|++|++++|.+..      ..|..+.. ++|++|++++|.+..+|.. | .+++|++|++++|.++.+
T Consensus        40 ~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  113 (549)
T 2z81_A           40 YIGHGDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL  113 (549)
T ss_dssp             EECSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred             ccChhhhhcCCcccEEECCCCCcCc------cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence            4557788899999999998876431      23455666 8899999999988888876 4 788899999999988853


Q ss_pred             --cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCC
Q 014575           85 --WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLE  142 (422)
Q Consensus        85 --~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~  142 (422)
                        +..+..+++|+++....+.... ...+..++.+++|++|++++|...+..|..+.+++
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  172 (549)
T 2z81_A          114 GVTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR  172 (549)
T ss_dssp             CSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             chhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence              4566777777777333322111 11122366778888888888776666666555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1e-20  Score=193.39  Aligned_cols=220  Identities=14%  Similarity=0.074  Sum_probs=170.8

Q ss_pred             hhhhCCC----CCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575           12 DTFTKMC----KLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus        12 ~~f~~m~----~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~   86 (422)
                      .++..+.    +|+.|+|++|.+...      .|..+.. ++|++|++++|.+..+++-..+++|++|+|++|.|..++.
T Consensus        24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           24 QALASLRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             HHHHTTSTTGGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE
T ss_pred             HHHHHhcccCCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC
Confidence            4444444    899999998875432      3455666 8899999999988876663378899999999998887754


Q ss_pred             cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCC-CC
Q 014575           87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EIS-SA  164 (422)
Q Consensus        87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~-~l  164 (422)
                      .    ++|+.|....+.+....     ...+++|+.|+|++|...+..|..+.++++|+.|+|++|...+..| .+. .+
T Consensus        98 ~----~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l  168 (487)
T 3oja_A           98 G----PSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (487)
T ss_dssp             C----TTCCEEECCSSCCCCEE-----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             C----CCcCEEECcCCcCCCCC-----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence            3    55555533333332221     2246789999999998888778888899999999999998777666 454 78


Q ss_pred             CCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575          165 GNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       165 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~  244 (422)
                      ++|+.|+|++|.|+.+|.. ..+++|+.|+|++|. +..+|..+..+++|+.|+|++|.. ..+|..+..+++|+.|+++
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             TTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECT
T ss_pred             CcccEEecCCCcccccccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcC
Confidence            9999999999999988654 468999999999965 556777799999999999999654 4689889999999999999


Q ss_pred             Ccccc
Q 014575          245 GTAIR  249 (422)
Q Consensus       245 ~n~l~  249 (422)
                      +|.+.
T Consensus       246 ~N~l~  250 (487)
T 3oja_A          246 GNGFH  250 (487)
T ss_dssp             TCCBC
T ss_pred             CCCCc
Confidence            99887

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.9e-19  Score=190.94  Aligned_cols=235  Identities=18%  Similarity=0.142  Sum_probs=104.7

Q ss_pred             eChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCC--CCCCCCCC----CCCCceEEEccCCcc
Q 014575            9 LHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYP--LKSLPSNI----HPEKLVSIEMPHGNI   81 (422)
Q Consensus         9 l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~--l~~lP~~~----~~~~L~~L~L~~~~l   81 (422)
                      +...+|..+++|+.|++++|.+.+.      .+..+.. ++|++|++++|.  +..+|...    ...+|+.|++++|++
T Consensus       320 i~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l  393 (680)
T 1ziw_A          320 IDDFSFQWLKCLEHLNMEDNDIPGI------KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI  393 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBCCC------CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred             cChhhcccCCCCCEEECCCCccCCC------ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence            4445677777777777777654321      2233333 556666655553  22333221    123455555555555


Q ss_pred             cccc-ccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCc--------------------------cc
Q 014575           82 QQLW-DDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR--------------------------IL  134 (422)
Q Consensus        82 ~~l~-~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~--------------------------~l  134 (422)
                      .++. ..+..+++|+.+....+.+.+ ...+..+..+++|++|++++|...+                          .+
T Consensus       394 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          394 SKIESDAFSWLGHLEVLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCEE-ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred             CeEChhhhhCCCCCCEEeCCCCcCcc-ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence            4432 233344444443211111110 0011123444444555554444333                          34


Q ss_pred             cccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc---------cccCCCCCCEEecCCCCCCCcc
Q 014575          135 PAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS---------SIECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       135 p~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~---------~i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      |..+.++++|+.|++++|......| .+..+++|+.|+|++|.++.++.         .++.+++|+.|++++|. +..+
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i  551 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEI  551 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCC
Confidence            4444455555555555544333322 24445555555555555543311         13445555555555532 2344


Q ss_pred             cc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          205 PS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       205 p~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      |. .+.++++|+.|++++|+..+..+..+..+++|+.|++++|.++.+
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  599 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV  599 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence            43 244555555555554333322222234455555555555555433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=2.1e-20  Score=193.89  Aligned_cols=233  Identities=15%  Similarity=0.128  Sum_probs=167.4

Q ss_pred             ChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccccccc
Q 014575           10 HPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVE   89 (422)
Q Consensus        10 ~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~   89 (422)
                      .+++|.++++|+.|++++|.+.       .+|..+...+|++|++.+|.+..+|. ..+++|+.|++++|.+...... .
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~-------~l~~~~~~~~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-~  344 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIE-------RVKDFSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE-V  344 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEEC-------SCCBCCSCCCCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC-C
T ss_pred             chhhhcCcCcccEEEecCccch-------hhhhhhccCCccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc-c
Confidence            4567888888888888886532       24444333578888888888887776 3566788888888877655433 5


Q ss_pred             CCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCc
Q 014575           90 HNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNI  167 (422)
Q Consensus        90 ~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L  167 (422)
                      .+++|+.+....+.+......+..+..+++|++|++++|... .+|..+..+++|++|++++|......|  .+..+++|
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            666666663333332222222344778888888888887544 444447788888888888887666555  47788888


Q ss_pred             CEEEeeCccCcc-cCccccCCCCCCEEecCCCCCC-CcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 014575          168 EVMYLNGTAIEE-LPSSIECLSRLSALYLDNCKRL-KSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG  245 (422)
Q Consensus       168 ~~L~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~  245 (422)
                      ++|++++|.++. .|..+..+++|+.|++++|... +.+|..+..+++|+.|++++|...+..|..++.+++|+.|++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            888888888874 4567788888888888887765 46888888888888888888877777788888888888888888


Q ss_pred             ccccccc
Q 014575          246 TAIREVY  252 (422)
Q Consensus       246 n~l~~lp  252 (422)
                      |.++.+|
T Consensus       504 n~l~~~~  510 (570)
T 2z63_A          504 NQLKSVP  510 (570)
T ss_dssp             SCCSCCC
T ss_pred             CcCCCCC
Confidence            8887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=5.1e-19  Score=164.75  Aligned_cols=178  Identities=21%  Similarity=0.245  Sum_probs=151.5

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ...+++++.++.+..+|..+. ++|+.|+|++|++.++....                         +..+++|++|+|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~-------------------------~~~l~~L~~L~L~   67 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDAT-------------------------FRGLTKLTWLNLD   67 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTT-------------------------TTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhH-------------------------hcCcccCCEEECC
Confidence            456789999999999998874 69999999999998875432                         6678899999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      +|...+..|..+.++++|++|++++|......+ .+..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|.. ..+
T Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~  146 (251)
T 3m19_A           68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSI  146 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred             CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-Ccc
Confidence            998777777778899999999999998665555 478999999999999999999876 58899999999999755 455


Q ss_pred             cc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          205 PS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       205 p~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      |. .+..+++|+.|+|++|...+..|..+..+++|+.|++++|.+...
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            54 689999999999999877766666889999999999999998743

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=1.1e-19  Score=184.46  Aligned_cols=170  Identities=13%  Similarity=0.159  Sum_probs=74.6

Q ss_pred             hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575           14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG   92 (422)
Q Consensus        14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~   92 (422)
                      |..+++|++|++++|.+..       ++. +.. ++|++|++++|.+..+|.-..+++|++|++++|.++.+.. +..++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTD-------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT  134 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             hhhhcCCCEEECCCCccCC-------chh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence            5666666666666665332       111 333 5555555555555555442244555555555555544432 34444


Q ss_pred             chHHHHHhhccCCCC------------------CCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCC
Q 014575           93 KLKQIISRACNFFTK------------------SPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSK  154 (422)
Q Consensus        93 ~L~~l~~~~~~~~~~------------------~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~  154 (422)
                      +|+++....+.+.+.                  ...+. ++.+++|+.|++++|. +..++. +.++++|++|++++|..
T Consensus       135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQI  211 (466)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCC
T ss_pred             CCCEEECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCcc
Confidence            444331111111000                  00111 4455566666666554 223332 44555555555555443


Q ss_pred             CCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCC
Q 014575          155 LKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDN  197 (422)
Q Consensus       155 l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~  197 (422)
                      .... .++.+++|+.|++++|.++.++ .+..+++|+.|++++
T Consensus       212 ~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          212 SDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN  252 (466)
T ss_dssp             CCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred             cccc-cccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCC
Confidence            3222 2333444444444444444432 233344444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.8e-19  Score=191.13  Aligned_cols=234  Identities=21%  Similarity=0.149  Sum_probs=112.8

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCC------CCCC----CC-CCCCceEEEccC
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLK------SLPS----NI-HPEKLVSIEMPH   78 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~------~lP~----~~-~~~~L~~L~L~~   78 (422)
                      +.+|.++++|+.|++++|.+.      -..|..+.. ++|++|++.++...      .+|.    .| .+++|++|++++
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~  338 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQ------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED  338 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBS------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred             cccccCcccccEeeCCCCccC------ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence            445555666666666555422      113334444 55666655544222      3332    23 556777777777


Q ss_pred             Cccccccc-cccCCcchHHHHHhhccCCCCCCcchhhh--cCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCC
Q 014575           79 GNIQQLWD-DVEHNGKLKQIISRACNFFTKSPNHSLTL--HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKL  155 (422)
Q Consensus        79 ~~l~~l~~-~~~~l~~L~~l~~~~~~~~~~~~~~~li~--~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l  155 (422)
                      |.+.++.+ .+..+++|+++....+...........+.  ..++|+.|++++|...+..|..+..+++|+.|++++|...
T Consensus       339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            77766543 24555666555222111100000000011  1134555555555555555555555666666666665544


Q ss_pred             CCCc--CCCCCCCcCEEEeeCccCcccC-ccccCCCCCCEEecCCCCCC--CcccccccCCCCCcEEEccCCCCCCCCCc
Q 014575          156 KTLP--EISSAGNIEVMYLNGTAIEELP-SSIECLSRLSALYLDNCKRL--KSLPSSLCKLNSLNFIYLRWCSSLKSLPD  230 (422)
Q Consensus       156 ~~~p--~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~  230 (422)
                      +.+|  .+..+++|++|++++|.++.++ ..+..+++|+.|++++|...  +.+|..+..+++|+.|++++|...+..|.
T Consensus       419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~  498 (680)
T 1ziw_A          419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD  498 (680)
T ss_dssp             EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence            4443  3555555666666655555432 23444555555555554322  34455555555555555555444333333


Q ss_pred             ccCCCCCCCEEeccCccccc
Q 014575          231 ELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       231 ~~~~l~~L~~L~l~~n~l~~  250 (422)
                      .+..+++|+.|++++|.++.
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~  518 (680)
T 1ziw_A          499 MLEGLEKLEILDLQHNNLAR  518 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCGG
T ss_pred             hhccccccCEEeCCCCCccc
Confidence            44555555555555555444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=7.6e-20  Score=190.02  Aligned_cols=125  Identities=17%  Similarity=0.120  Sum_probs=88.8

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCccccccccccCCcch
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLP-SNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKL   94 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP-~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L   94 (422)
                      ++|+.|++++|.+...      .|..+.. ++|++|++++|.+..++ ..| .+++|++|++++|+|+.++..  .+++|
T Consensus        52 ~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             TTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCcCEEECCCCCcccc------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            6899999999875432      3356666 89999999999999885 445 789999999999999988776  78888


Q ss_pred             HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC--CEEEeeCCCC
Q 014575           95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL--KELDLWGCSK  154 (422)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~~~~  154 (422)
                      +++....+.+.... .+..++.+++|++|++++|...+.   .+..+++|  +.|++++|..
T Consensus       124 ~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          124 RHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             SEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             CEEECCCCCccccC-chHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            88855444443332 223478888888888888765432   23333444  6666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=9.5e-20  Score=175.15  Aligned_cols=197  Identities=15%  Similarity=0.179  Sum_probs=157.1

Q ss_pred             hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575           14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG   92 (422)
Q Consensus        14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~   92 (422)
                      +..+++|+.|+++++.+.       .++ ++.. ++|++|++++|.+..+|.-..+++|++|++++|+++.+. .     
T Consensus        37 ~~~l~~L~~L~l~~~~i~-------~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~-----  102 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-------TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-A-----  102 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-------CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-G-----
T ss_pred             HHHcCCcCEEEeeCCCcc-------Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-h-----
Confidence            455778888888886532       133 4444 888888888888888887337788888888888877642 1     


Q ss_pred             chHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEe
Q 014575           93 KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL  172 (422)
Q Consensus        93 ~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L  172 (422)
                                           +..+++|++|++++|.. ..+|. +..+++|+.|++++|.. ..++.+..+++|+.|+|
T Consensus       103 ---------------------~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l  158 (308)
T 1h6u_A          103 ---------------------IAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSI  158 (308)
T ss_dssp             ---------------------GTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEEC
T ss_pred             ---------------------hcCCCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCcc-CcCccccCCCCccEEEc
Confidence                                 56788899999999864 45665 88999999999999864 55666888999999999


Q ss_pred             eCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       173 ~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      ++|.++.++. +..+++|+.|++++|. +..+|. +..+++|+.|++++|... .++. +..+++|+.|++++|.++..|
T Consensus       159 ~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          159 GNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred             cCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCCccC-cccc-ccCCCCCCEEEccCCeeecCC
Confidence            9999999887 8999999999999965 556665 889999999999997554 4543 788999999999999998766


Q ss_pred             c
Q 014575          253 F  253 (422)
Q Consensus       253 ~  253 (422)
                      .
T Consensus       234 ~  234 (308)
T 1h6u_A          234 V  234 (308)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=2.9e-19  Score=168.61  Aligned_cols=199  Identities=16%  Similarity=0.068  Sum_probs=137.2

Q ss_pred             CCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchH
Q 014575           19 KLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLK   95 (422)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~   95 (422)
                      +|+.|++++|.+..      ..+..+.. ++|++|++++|.+..++.. | .+++|++|++++|.+..+...        
T Consensus        29 ~l~~L~ls~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------   94 (276)
T 2z62_A           29 STKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG--------   94 (276)
T ss_dssp             TCCEEECTTCCCCE------ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------
T ss_pred             CccEEECCCCcccc------cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh--------
Confidence            46666666654321      01223444 6666666666666666542 3 556666666666666554322        


Q ss_pred             HHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC-CCc-CCCCCCCcCEEEee
Q 014575           96 QIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK-TLP-EISSAGNIEVMYLN  173 (422)
Q Consensus        96 ~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~L~L~  173 (422)
                                       .+..+++|++|++++|...+..+..+.++++|++|++++|.... .+| .+..+++|+.|+|+
T Consensus        95 -----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           95 -----------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             -----------------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             -----------------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence                             25677889999999887665555568888999999999987655 245 58888899999999


Q ss_pred             CccCcccCc-cccCCCCCC----EEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575          174 GTAIEELPS-SIECLSRLS----ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       174 ~n~i~~lp~-~i~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l  248 (422)
                      +|.++.+|. .+..+.+|+    .|++++|. +..+|.......+|+.|++++|...+..+..+..+++|+.|++++|++
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence            999987764 555555555    88999854 556665555666899999998765444444568889999999999987


Q ss_pred             c
Q 014575          249 R  249 (422)
Q Consensus       249 ~  249 (422)
                      .
T Consensus       237 ~  237 (276)
T 2z62_A          237 D  237 (276)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=2.5e-21  Score=197.96  Aligned_cols=220  Identities=12%  Similarity=0.061  Sum_probs=180.1

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~   86 (422)
                      .+.+.+|.++++|++|+|++|.+.+.      .|  +.. ++|++|++++|.+..+|..   ++|++|++++|.|..++.
T Consensus        48 ~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~l~~~~~  116 (487)
T 3oja_A           48 QISAADLAPFTKLELLNLSSNVLYET------LD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC  116 (487)
T ss_dssp             CCCGGGGTTCTTCCEEECTTSCCEEE------EE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCCCEEE
T ss_pred             CCCHHHHhCCCCCCEEEeeCCCCCCC------cc--cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCcCCCCCc
Confidence            46688999999999999999875321      22  555 9999999999999988863   799999999999998765


Q ss_pred             cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcCCCCCC
Q 014575           87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAG  165 (422)
Q Consensus        87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~~~~l~  165 (422)
                      .  .+++|+.|....+.+.+.  .+..++.+++|++|+|++|...+..|..+. .+++|++|+|++|... .+|....++
T Consensus       117 ~--~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~  191 (487)
T 3oja_A          117 S--RGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFA  191 (487)
T ss_dssp             C--CCSSCEEEECCSSCCCSG--GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCT
T ss_pred             c--ccCCCCEEECCCCCCCCC--CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-cccccccCC
Confidence            3  456777764444433332  233378899999999999988888888776 7999999999998744 457667799


Q ss_pred             CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCC-CCCCcccCCCCCCCEEecc
Q 014575          166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSL-KSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l-~~lp~~~~~l~~L~~L~l~  244 (422)
                      +|+.|+|++|.|+.+|+.+..+++|+.|+|++|. +..+|..+..+++|+.|++++|... +.+|..+..++.|+.++++
T Consensus       192 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999999999999999999999999999999965 5679999999999999999998877 5777878877777777664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=7.3e-19  Score=165.76  Aligned_cols=197  Identities=18%  Similarity=0.135  Sum_probs=162.2

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      .+..+++|+.|.+.++.+.        -..++.. ++|++|++++|.+..++....+++|++|++++|.+++++...   
T Consensus        36 ~~~~l~~L~~L~l~~~~i~--------~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---  104 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIK--------SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGV---  104 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCC--------CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTT---
T ss_pred             ccccccceeeeeeCCCCcc--------cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhH---
Confidence            4567889999999987632        2234555 999999999999999875448899999999999998775532   


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEE
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVM  170 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L  170 (422)
                                            ++.+++|++|++++|...+..+..+.++++|++|++++|......+. +..+++|+.|
T Consensus       105 ----------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A          105 ----------------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             ----------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ----------------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence                                  56788999999999987766666678999999999999976554443 7899999999


Q ss_pred             EeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          171 YLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       171 ~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      ++++|.++.+|.. ++.+++|+.|++++|...+..|..+..+++|+.|++++|+..+.       +++|+.|++..|.+.
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHS  235 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTG
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCC
Confidence            9999999988765 58899999999999877666666688999999999999876544       457888888888776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=1.7e-19  Score=183.05  Aligned_cols=220  Identities=16%  Similarity=0.165  Sum_probs=165.0

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      +|.++++|+.|++.++. .       .++ .+.. ++|++|++++|.+..++....+++|++|++++|.+..+.+ +..+
T Consensus       151 ~~~~l~~L~~L~l~~~~-~-------~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l  220 (466)
T 1o6v_A          151 ALSGLTSLQQLSFGNQV-T-------DLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGIL  220 (466)
T ss_dssp             GGTTCTTCSEEEEEESC-C-------CCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGC
T ss_pred             hhccCCcccEeecCCcc-c-------Cch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-cccc
Confidence            58889999999997532 1       122 2444 8899999999998888764478899999999998887654 5667


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY  171 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~  171 (422)
                      ++|+.+....+.+.+.   + .+..+++|+.|++++|...+. +. +..+++|+.|++++|... .++.+..+++|+.|+
T Consensus       221 ~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~  293 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDI---G-TLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQIS-NISPLAGLTALTNLE  293 (466)
T ss_dssp             TTCCEEECCSSCCCCC---G-GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEE
T ss_pred             CCCCEEECCCCCcccc---h-hhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccC-ccccccCCCccCeEE
Confidence            7777774444433332   2 267888999999999865544 33 778899999999998654 445588888999999


Q ss_pred             eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      |++|.++.+++ ++.+++|+.|++++|+..+..|  +..+++|+.|++++|...+ + ..+..+++|+.|++++|.++.+
T Consensus       294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCCEEeCCCCccCcc
Confidence            99999888776 7888999999999976555444  6788899999998875444 4 4678888999999999988876


Q ss_pred             ccc
Q 014575          252 YFF  254 (422)
Q Consensus       252 p~f  254 (422)
                      +.+
T Consensus       369 ~~~  371 (466)
T 1o6v_A          369 TPL  371 (466)
T ss_dssp             GGG
T ss_pred             chh
Confidence            553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=1e-18  Score=177.13  Aligned_cols=208  Identities=17%  Similarity=0.114  Sum_probs=152.9

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      +|.++++|++|++++|.+.+       +|  +.. ++|++|++++|.+..+| -..+++|++|++++|++++++  +..+
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l  126 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQN  126 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred             hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCC
Confidence            68999999999999987643       22  455 89999999999999886 227889999999999999874  7778


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY  171 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~  171 (422)
                      ++|+++....+.+.+.   +  ++.+++|++|++++|...+.++  +..+++|+.|++++|...+ +| ++.+++|+.|+
T Consensus       127 ~~L~~L~l~~N~l~~l---~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~-l~~l~~L~~L~  197 (457)
T 3bz5_A          127 PLLTYLNCARNTLTEI---D--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD-VSQNKLLNRLN  197 (457)
T ss_dssp             TTCCEEECTTSCCSCC---C--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC-CTTCTTCCEEE
T ss_pred             CcCCEEECCCCcccee---c--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-ec-cccCCCCCEEE
Confidence            8888875444444432   1  6678888888888887777763  6788888888888876443 55 77778888888


Q ss_pred             eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      +++|.++.++  ++.+++|+.|++++|+. ..+|  +..+++|+.|++++|+..+ +|  ++.+++|+.|++++|.++
T Consensus       198 l~~N~l~~~~--l~~l~~L~~L~Ls~N~l-~~ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~  267 (457)
T 3bz5_A          198 CDTNNITKLD--LNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLL  267 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCS
T ss_pred             CcCCcCCeec--cccCCCCCEEECcCCcc-cccC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCC
Confidence            8888888774  77788888888888654 4466  6777888888888765444 33  334455555555544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=4.4e-20  Score=180.59  Aligned_cols=224  Identities=15%  Similarity=0.109  Sum_probs=167.7

Q ss_pred             CCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccccc-cccCCcc
Q 014575           17 MCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWD-DVEHNGK   93 (422)
Q Consensus        17 m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~   93 (422)
                      ++.....+.+++.+.       .+|.++. ++|++|++++|.+..+|. .+ .+++|++|++++|+++++.. .+..+++
T Consensus        30 C~~~~~c~~~~~~l~-------~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-------SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             ECTTSEEECCSTTCS-------SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCeEeeCCCCCcc-------ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            344555666655432       2555443 789999999999999988 45 88999999999999998754 4777888


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccc--cCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCE
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPA--GIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEV  169 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~  169 (422)
                      |+++....+.+..  ..+..++.+++|++|++++|.. ..+|.  .+.++++|++|++++|..++.++  .+..+++|++
T Consensus       102 L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          102 LEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             CCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            8888544444432  2334478899999999999854 45665  67789999999999986565554  5888999999


Q ss_pred             EEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccc-cCCCCCcEEEccCCCCCCC--------------------
Q 014575          170 MYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSL-CKLNSLNFIYLRWCSSLKS--------------------  227 (422)
Q Consensus       170 L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~Ls~c~~l~~--------------------  227 (422)
                      |++++|.++.+ |..++.+++|++|++++|. ++.+|..+ ..+++|+.|++++|...+.                    
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence            99999999866 7788999999999999965 56676653 4589999999999866553                    


Q ss_pred             -----------CCcccCCCCCCCEEeccCccccccc
Q 014575          228 -----------LPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       228 -----------lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                                 +|+.+..+++|+.|++++|.++.+|
T Consensus       258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~  293 (353)
T 2z80_A          258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP  293 (353)
T ss_dssp             SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC
T ss_pred             cccccCcchhhhHHHHhcccCCCEEECCCCCCCccC
Confidence                       2333456677777777777776554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=9.5e-20  Score=188.92  Aligned_cols=227  Identities=15%  Similarity=0.146  Sum_probs=184.0

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccc---cccc
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQL---WDDV   88 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l---~~~~   88 (422)
                      ..+.++ +|+.|++++|.+.       .+|.. ..++|++|++.++.+........+++|++|++++|.+...   +..+
T Consensus       299 ~~~~~~-~L~~L~l~~n~~~-------~l~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  369 (570)
T 2z63_A          299 DFSYNF-GWQHLELVNCKFG-------QFPTL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD  369 (570)
T ss_dssp             BCCSCC-CCSEEEEESCBCS-------SCCBC-BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred             hhhccC-CccEEeeccCccc-------ccCcc-cccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc
Confidence            446677 9999999998643       23431 2288999999999877655556788999999999999876   3456


Q ss_pred             cCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCC
Q 014575           89 EHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSAGN  166 (422)
Q Consensus        89 ~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~  166 (422)
                      ..+++|+++....+.+...  .+. +..+++|++|++++|...+..| ..+.++++|++|++++|......| .+..+++
T Consensus       370 ~~~~~L~~L~l~~n~l~~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITM--SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEE--EEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             cccCccCEEECCCCccccc--ccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence            6777777773333222221  122 7789999999999997766655 457799999999999998877777 5889999


Q ss_pred             cCEEEeeCccCc--ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575          167 IEVMYLNGTAIE--ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       167 L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~  244 (422)
                      |++|+|++|.++  .+|..++.+++|+.|++++|+..+..|..+..+++|+.|++++|...+..|..+..+++|+.|+++
T Consensus       447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence            999999999997  689999999999999999988777779999999999999999988777777788999999999999


Q ss_pred             Cccccc
Q 014575          245 GTAIRE  250 (422)
Q Consensus       245 ~n~l~~  250 (422)
                      +|.++.
T Consensus       527 ~N~~~~  532 (570)
T 2z63_A          527 TNPWDC  532 (570)
T ss_dssp             SSCBCC
T ss_pred             CCcccC
Confidence            999873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=4e-19  Score=193.31  Aligned_cols=239  Identities=13%  Similarity=0.109  Sum_probs=180.1

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCcccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSY-LVGPGF-AEVRYLHWYGYPLKSL-PSNI-HPEKLVSIEMPHGNIQQ   83 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~l-p~~l~~-~~Lr~L~l~~~~l~~l-P~~~-~~~~L~~L~L~~~~l~~   83 (422)
                      .+.+.+|.++++|++|++++|...      ..+ |..+.. ++|++|++++|.+..+ |..| .+++|++|+|++|.+.+
T Consensus        38 ~i~~~~~~~l~~L~~LdLs~n~~~------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           38 TVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             EECSSSCSSCCSCSEEEECTTCCC------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred             ccChhHCcccccCeEEeCCCCCCc------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence            466788999999999999997532      224 666777 9999999999999987 6666 88999999999999987


Q ss_pred             -cccc--ccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCC--CC---------------
Q 014575           84 -LWDD--VEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRL--EF---------------  143 (422)
Q Consensus        84 -l~~~--~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l--~~---------------  143 (422)
                       .+..  +..+++|++|....+.+.... ++..++.+++|++|+|++|...+..|..+..+  ++               
T Consensus       112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~  190 (844)
T 3j0a_A          112 AVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV  190 (844)
T ss_dssp             CCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred             ccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence             3333  778888888855544444433 22348899999999999987665544433322  22               


Q ss_pred             ---------------CCEEEeeCCCCCCCCcC-------------------------------------CCC--CCCcCE
Q 014575          144 ---------------LKELDLWGCSKLKTLPE-------------------------------------ISS--AGNIEV  169 (422)
Q Consensus       144 ---------------L~~L~Ls~~~~l~~~p~-------------------------------------~~~--l~~L~~  169 (422)
                                     |+.|++++|......|.                                     +..  .++|+.
T Consensus       191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~  270 (844)
T 3j0a_A          191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH  270 (844)
T ss_dssp             CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred             ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence                           66666666643332221                                     111  257888


Q ss_pred             EEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccc
Q 014575          170 MYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       170 L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l  248 (422)
                      |+|++|.++.+ |..+..+++|+.|+|++|+..+..|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.+
T Consensus       271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  350 (844)
T 3j0a_A          271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI  350 (844)
T ss_dssp             EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred             EECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC
Confidence            88888888765 45678899999999999877777777889999999999999877777788899999999999999998


Q ss_pred             ccccc
Q 014575          249 REVYF  253 (422)
Q Consensus       249 ~~lp~  253 (422)
                      ..++.
T Consensus       351 ~~~~~  355 (844)
T 3j0a_A          351 AIIQD  355 (844)
T ss_dssp             CCCCS
T ss_pred             CccCh
Confidence            87764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.6e-18  Score=161.73  Aligned_cols=179  Identities=21%  Similarity=0.230  Sum_probs=148.1

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ..++.++.+++.++.+|..+ +++|++|++++|++..++...                         +..+++|++|+|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~-------------------------~~~l~~L~~L~l~   69 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKA-------------------------FHRLTKLRLLYLN   69 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTS-------------------------SSSCTTCCEEECC
T ss_pred             CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHH-------------------------hcCCCCCCEEECC
Confidence            56789999999999999877 468999999999998775432                         6678899999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      +|......+..+.++++|++|++++|......+ .+..+++|++|+|++|.++.+|. .++.+++|++|++++|. +..+
T Consensus        70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  148 (270)
T 2o6q_A           70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSL  148 (270)
T ss_dssp             SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred             CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCcc
Confidence            986554334445789999999999988655444 47889999999999999998876 46899999999999975 4455


Q ss_pred             cc-cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          205 PS-SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       205 p~-~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      |. .+..+++|+.|++++|...+..+..+..+++|+.|++++|.++.+|
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            54 4789999999999998666655566889999999999999998765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=5.9e-19  Score=166.46  Aligned_cols=186  Identities=17%  Similarity=0.101  Sum_probs=150.6

Q ss_pred             ccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcC
Q 014575           40 YLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHL  117 (422)
Q Consensus        40 lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l  117 (422)
                      +|..+. .+|++|++++|.+..+|. .| .+++|++|++++|.+..+....                         +..+
T Consensus        22 ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------~~~l   75 (276)
T 2z62_A           22 IPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-------------------------YQSL   75 (276)
T ss_dssp             CCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-------------------------TTTC
T ss_pred             cCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-------------------------ccCC
Confidence            454333 679999999999998887 44 7889999999999988765432                         5678


Q ss_pred             CCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcc--cCccccCCCCCCEEe
Q 014575          118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEE--LPSSIECLSRLSALY  194 (422)
Q Consensus       118 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~  194 (422)
                      ++|++|+|++|...+..|..+.++++|++|++++|......+ .+..+++|++|++++|.++.  +|..++.+++|+.|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence            899999999998777777788899999999999998666555 58899999999999999986  788999999999999


Q ss_pred             cCCCCCCCcccccccCCCCCc----EEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          195 LDNCKRLKSLPSSLCKLNSLN----FIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       195 L~~~~~l~~lp~~l~~l~~L~----~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +++|+..+..+..+..+++|+    .|++++|... .+|.......+|+.|++++|.++.+|
T Consensus       156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~  216 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVP  216 (276)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred             CCCCCCCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCCCcccEEECCCCceeecC
Confidence            999876555556666666666    8999997554 45554445568999999999998665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=2.9e-18  Score=163.41  Aligned_cols=176  Identities=22%  Similarity=0.262  Sum_probs=147.5

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ++++.+++.++.+..+|..+ +++++.|++++|.|..+....                         +..+++|++|+|+
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~-------------------------~~~l~~L~~L~L~   63 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLAT-------------------------LMPYTRLTQLNLD   63 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGG-------------------------GTTCTTCCEEECT
T ss_pred             CCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHH-------------------------hhcCCCCCEEECC
Confidence            77999999999999999887 479999999999998764432                         6678899999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      +|. +..++.. ..+++|++|++++|... .+| .+..+++|+.|+|++|+|+.+|+ .+..+++|++|+|++|...+..
T Consensus        64 ~n~-l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  140 (290)
T 1p9a_G           64 RAE-LTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (290)
T ss_dssp             TSC-CCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCc-cCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence            986 4555653 68999999999998754 566 58899999999999999999874 6899999999999997655444


Q ss_pred             cccccCCCCCcEEEccCCCCCCCCCc-ccCCCCCCCEEeccCccccccc
Q 014575          205 PSSLCKLNSLNFIYLRWCSSLKSLPD-ELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       205 p~~l~~l~~L~~L~Ls~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +..+..+++|+.|+|++|.. ..+|. .+..+++|+.|++++|.++.+|
T Consensus       141 ~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          141 PGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             TTTTTTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             hhhcccccCCCEEECCCCcC-CccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            44578899999999999755 45555 5688999999999999998665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=6.5e-20  Score=189.50  Aligned_cols=140  Identities=15%  Similarity=0.104  Sum_probs=110.7

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCcccccccc-ccCCcc
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWDD-VEHNGK   93 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~   93 (422)
                      ++|+.|++++|.+..      ..|..+.. ++|++|++++|.+..+|. .| .+++|++|++++|++.+++.. +..+++
T Consensus        26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCccEEECcCCccCc------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            689999999987532      24566777 999999999999998875 45 889999999999999998765 788899


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCc-CCCCC
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLP-EISSA  164 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l  164 (422)
                      |+++....+.+..... +..++.+++|++|++++|...+.+| ..+.++++|+.|++++|...+..| .+..+
T Consensus       100 L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             CCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             CcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            9988555554443322 2347899999999999998777776 578899999999999998776555 34443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=2.1e-19  Score=181.97  Aligned_cols=214  Identities=26%  Similarity=0.258  Sum_probs=116.2

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CC-------------eeEEEecCCCCCCCCCCCCCCCceEEEc
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AE-------------VRYLHWYGYPLKSLPSNIHPEKLVSIEM   76 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~-------------Lr~L~l~~~~l~~lP~~~~~~~L~~L~L   76 (422)
                      |++|++|++|++|++++|.+.+.      +|..+.. .+             +++|+++++.+..+|..  +++|++|++
T Consensus        27 P~~i~~L~~L~~L~l~~n~~~~~------~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l   98 (454)
T 1jl5_A           27 PVEAENVKSKTEYYNAWSEWERN------APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVA   98 (454)
T ss_dssp             -------CCHHHHHHHHHHHHHT------SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEEC
T ss_pred             ChhHhcccchhhhhccCCccccc------CCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEc
Confidence            45678888888888887654332      5665554 33             47788888877777762  467778888


Q ss_pred             cCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC
Q 014575           77 PHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK  156 (422)
Q Consensus        77 ~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~  156 (422)
                      ++|.+++++...   .+|+++....+.+......      .++|++|++++|... .+|. +.++++|++|++++|... 
T Consensus        99 ~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-  166 (454)
T 1jl5_A           99 SCNSLTELPELP---QSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-  166 (454)
T ss_dssp             CSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-
T ss_pred             cCCcCCcccccc---CCCcEEECCCCccCcccCC------CCCCCEEECcCCCCC-CCcc-cCCCCCCCEEECCCCcCc-
Confidence            877777765432   3444442222222221111      145666666666433 3553 666666666666666433 


Q ss_pred             CCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC
Q 014575          157 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE  236 (422)
Q Consensus       157 ~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~  236 (422)
                      .+|...  ++|++|++++|.++.+| .++.+++|+.|++++|. +..+|..   .++|+.|++++|.. ..+|+ ++.++
T Consensus       167 ~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l-~~lp~-~~~l~  237 (454)
T 1jl5_A          167 KLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNIL-EELPE-LQNLP  237 (454)
T ss_dssp             CCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCC-SSCCC-CTTCT
T ss_pred             ccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcC-Ccccc-cCCCC
Confidence            344322  26666666666666665 45666666666666643 3334432   23555555555432 35553 55555


Q ss_pred             CCCEEeccCcccccccc
Q 014575          237 ALDSLIAEGTAIREVYF  253 (422)
Q Consensus       237 ~L~~L~l~~n~l~~lp~  253 (422)
                      +|+.|++++|.++.+|.
T Consensus       238 ~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          238 FLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             TCCEEECCSSCCSSCCS
T ss_pred             CCCEEECCCCcCCcccc
Confidence            55555555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=9.4e-20  Score=175.36  Aligned_cols=183  Identities=15%  Similarity=0.091  Sum_probs=140.5

Q ss_pred             CCeeEEEecCCCCC-CCCCCC---CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcE
Q 014575           47 AEVRYLHWYGYPLK-SLPSNI---HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVN  122 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~-~lP~~~---~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~  122 (422)
                      ++|++|++++|.+. .+|..+   .+++|++|+|++|++.+.+..+.      .+.               ...+++|++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~l~---------------~~~~~~L~~  153 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA------ELQ---------------QWLKPGLKV  153 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH------HHH---------------TTCCTTCCE
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHH------HHH---------------HhhcCCCcE
Confidence            67888888888776 566653   57788888888888776632210      000               012378999


Q ss_pred             EeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCC--c-CC--CCCCCcCEEEeeCccCcccC---c-cccCCCCCCEE
Q 014575          123 LNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTL--P-EI--SSAGNIEVMYLNGTAIEELP---S-SIECLSRLSAL  193 (422)
Q Consensus       123 L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~--p-~~--~~l~~L~~L~L~~n~i~~lp---~-~i~~l~~L~~L  193 (422)
                      |+|++|...+..|..+.++++|++|++++|...+..  | .+  ..+++|++|+|++|.|+.+|   . .+..+++|+.|
T Consensus       154 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL  233 (312)
T ss_dssp             EEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred             EEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence            999999877777788999999999999999866542  2 34  88999999999999999544   3 34678999999


Q ss_pred             ecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          194 YLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       194 ~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      ++++|...+..| ..+..+++|+.|++++|.. +.+|..+.  ++|+.|++++|+++.+|.
T Consensus       234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCC--SEEEEEECCSSCCCSCCC
T ss_pred             ECCCCcCCcccchhhhhhcCCCCEEECCCCcc-Chhhhhcc--CCceEEECCCCCCCCChh
Confidence            999987666664 4466789999999999765 58888876  899999999999987765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=1.6e-18  Score=160.00  Aligned_cols=180  Identities=18%  Similarity=0.283  Sum_probs=123.5

Q ss_pred             CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCc-cccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575           47 AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGN-IQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL  123 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~-l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L  123 (422)
                      .+|++|++++|.++.+|.. | .+++|++|++++|+ ++.+....                         +..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-------------------------f~~l~~L~~L   85 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-------------------------FYNLSKVTHI   85 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-------------------------EESCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-------------------------cCCCcCCcEE
Confidence            5778888888888777763 4 67788888888886 77664421                         4566777888


Q ss_pred             eccCCCCCcccc-ccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcC---EEEeeCc-cCcccCcc-ccCCCCCC-EEecC
Q 014575          124 NLNNCKSLRILP-AGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE---VMYLNGT-AIEELPSS-IECLSRLS-ALYLD  196 (422)
Q Consensus       124 ~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~---~L~L~~n-~i~~lp~~-i~~l~~L~-~L~L~  196 (422)
                      ++++|..+..+| ..+.++++|++|++++|.. ..+|.+..+++|+   .|++++| .++.+|.. +..+++|+ .|+++
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            887722344444 4566777888888887764 3466677777777   8888887 77777653 67777788 88887


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCCCCCCC-CcccCCC-CCCCEEeccCcccccccc
Q 014575          197 NCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSL-PDELGNL-EALDSLIAEGTAIREVYF  253 (422)
Q Consensus       197 ~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~l-p~~~~~l-~~L~~L~l~~n~l~~lp~  253 (422)
                      +|. +..+|......++|+.|++++|..++.+ +..+..+ ++|+.|++++|.++.+|.
T Consensus       165 ~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          165 NNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             SCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             CCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence            754 4466665444477888888877544455 3456777 778888888887776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=3.4e-18  Score=157.82  Aligned_cols=192  Identities=18%  Similarity=0.210  Sum_probs=157.7

Q ss_pred             CCCceEEEecCCCCCCCceeEEccC-CCCC-CCeeEEEecCCC-CCCCCCC-C-CCCCceEEEccC-CccccccccccCC
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLV-GPGF-AEVRYLHWYGYP-LKSLPSN-I-HPEKLVSIEMPH-GNIQQLWDDVEHN   91 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~-~l~~-~~Lr~L~l~~~~-l~~lP~~-~-~~~~L~~L~L~~-~~l~~l~~~~~~l   91 (422)
                      ++|+.|++++|.+.       .+|. .+.. ++|++|++++|. ++.+|.. | .+++|++|++++ |+++.++...   
T Consensus        31 ~~l~~L~l~~n~l~-------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~---  100 (239)
T 2xwt_C           31 PSTQTLKLIETHLR-------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---  100 (239)
T ss_dssp             TTCCEEEEESCCCS-------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---
T ss_pred             CcccEEEEeCCcce-------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---
Confidence            38999999998753       2444 5655 999999999997 9999874 5 889999999999 9998875432   


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCC---EEEeeCCCCCCCCc--CCCCCCC
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLK---ELDLWGCSKLKTLP--EISSAGN  166 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~---~L~Ls~~~~l~~~p--~~~~l~~  166 (422)
                                            +..+++|++|++++|.. ..+|. +..+++|+   .|++++|..++.+|  .+..+++
T Consensus       101 ----------------------f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~  156 (239)
T 2xwt_C          101 ----------------------LKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN  156 (239)
T ss_dssp             ----------------------EECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred             ----------------------hCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence                                  66788999999999864 45887 88888888   99999994455555  3889999


Q ss_pred             cC-EEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc-ccccCC-CCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575          167 IE-VMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP-SSLCKL-NSLNFIYLRWCSSLKSLPDELGNLEALDSLIA  243 (422)
Q Consensus       167 L~-~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l-~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l  243 (422)
                      |+ .|++++|.++.+|......++|+.|++++|..++.+| ..+..+ ++|+.|++++|+ +..+|..  .+++|+.|++
T Consensus       157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l  233 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIA  233 (239)
T ss_dssp             SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEEC
T ss_pred             ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeec
Confidence            99 9999999999999876566899999999986566775 457888 999999999964 5677765  6789999999


Q ss_pred             cCc
Q 014575          244 EGT  246 (422)
Q Consensus       244 ~~n  246 (422)
                      +++
T Consensus       234 ~~~  236 (239)
T 2xwt_C          234 RNT  236 (239)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=6.9e-19  Score=169.08  Aligned_cols=183  Identities=15%  Similarity=0.085  Sum_probs=112.2

Q ss_pred             CCeeEEEecCCCCC-CCCCC---CCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcE
Q 014575           47 AEVRYLHWYGYPLK-SLPSN---IHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVN  122 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~-~lP~~---~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~  122 (422)
                      ++|++|++++|.+. ..|..   ..+++|++|+|++|.+.......      ..               ..+..+++|++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~------~~---------------~~~~~~~~L~~  149 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL------AE---------------LQQWLKPGLKV  149 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH------HH---------------HHTTBCSCCCE
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh------HH---------------HHhhhccCCCE
Confidence            56888888888876 34444   35678888888888887532110      00               00335666777


Q ss_pred             EeccCCCCCccccccCCCCCCCCEEEeeCCCCCCC--Cc---CCCCCCCcCEEEeeCccCcccCcc----ccCCCCCCEE
Q 014575          123 LNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKT--LP---EISSAGNIEVMYLNGTAIEELPSS----IECLSRLSAL  193 (422)
Q Consensus       123 L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~p---~~~~l~~L~~L~L~~n~i~~lp~~----i~~l~~L~~L  193 (422)
                      |+|++|...+..|..+.++++|++|+|++|...+.  ++   .++.+++|++|+|++|+++.+|..    ++.+++|++|
T Consensus       150 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          150 LSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             EEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSE
T ss_pred             EEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEE
Confidence            77777666555556666677777777777654431  11   135566677777777777655442    3566677777


Q ss_pred             ecCCCCCCCcccccccCC---CCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          194 YLDNCKRLKSLPSSLCKL---NSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       194 ~L~~~~~l~~lp~~l~~l---~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +|++|...+..|..+..+   ++|++|++++|.. +.+|..+.  ++|+.|++++|.++.+|.
T Consensus       230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~--~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL-EQVPKGLP--AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC-CSCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred             ECCCCCCCccchhhHHhccCcCcCCEEECCCCCC-Cchhhhhc--CCCCEEECCCCcCCCCch
Confidence            777765555556555555   4677777766543 36666553  567777777777666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.9e-19  Score=173.57  Aligned_cols=222  Identities=12%  Similarity=0.064  Sum_probs=180.7

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~   86 (422)
                      .+.+.+|.++++|+.|++++|.+.+       .+. +.. ++|++|++++|.+..+|.   .++|++|++++|++..+..
T Consensus        48 ~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~~n~l~~~~~  116 (317)
T 3o53_A           48 QISAADLAPFTKLELLNLSSNVLYE-------TLD-LESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVSC  116 (317)
T ss_dssp             CCCHHHHTTCTTCCEEECTTSCCEE-------EEE-ETTCTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCCSEEEE
T ss_pred             cCCHHHhhCCCcCCEEECCCCcCCc-------chh-hhhcCCCCEEECcCCccccccC---CCCcCEEECCCCccCCcCc
Confidence            4568899999999999999987532       121 555 899999999999988875   4799999999999998754


Q ss_pred             cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCC-CCCCCCEEEeeCCCCCCCCcCCCCCC
Q 014575           87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIF-RLEFLKELDLWGCSKLKTLPEISSAG  165 (422)
Q Consensus        87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~~~~l~~~p~~~~l~  165 (422)
                      .  .+++|+.+....+.+...  .+..++.+++|++|++++|...+..|..+. .+++|++|++++|. +..+|....++
T Consensus       117 ~--~~~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~  191 (317)
T 3o53_A          117 S--RGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFA  191 (317)
T ss_dssp             C--CCSSCEEEECCSSCCCSG--GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCT
T ss_pred             c--ccCCCCEEECCCCCCCCc--cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccccccc
Confidence            3  366777664443333332  222377889999999999987776666664 78999999999987 44557666789


Q ss_pred             CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCC-CCCCcccCCCCCCCEEecc
Q 014575          166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSL-KSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l-~~lp~~~~~l~~L~~L~l~  244 (422)
                      +|++|+|++|.++.+|+.+..+++|+.|++++| .+..+|..+..+++|+.|++++|+.. +.+|..+..+++|+.++++
T Consensus       192 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            999999999999999999999999999999996 56689999999999999999998887 6788888888889988887


Q ss_pred             Cc
Q 014575          245 GT  246 (422)
Q Consensus       245 ~n  246 (422)
                      ++
T Consensus       271 ~~  272 (317)
T 3o53_A          271 TV  272 (317)
T ss_dssp             HH
T ss_pred             Cc
Confidence            54

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=1.7e-17  Score=159.29  Aligned_cols=173  Identities=20%  Similarity=0.301  Sum_probs=148.2

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ++|++|++.++.+..+|....+++|++|++++|.+..+..                           +..+++|++|+++
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---------------------------~~~l~~L~~L~L~   93 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---------------------------LKNLTKITELELS   93 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------GTTCCSCCEEECC
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---------------------------HccCCCCCEEEcc
Confidence            7899999999999999854488999999999999887532                           4577889999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|. +..+| .+..+++|+.|++++|.. ..++.+..+++|+.|++++|.++.+|. ++.+++|+.|++++|. +..++.
T Consensus        94 ~n~-l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~  168 (308)
T 1h6u_A           94 GNP-LKNVS-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP  168 (308)
T ss_dssp             SCC-CSCCG-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG
T ss_pred             CCc-CCCch-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh
Confidence            986 55566 488999999999999874 557779999999999999999999887 8899999999999975 556766


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccccc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFF  254 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~f  254 (422)
                       +..+++|+.|++++|.. ..++. +..+++|+.|++++|.++.++.+
T Consensus       169 -l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~N~l~~~~~l  213 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNNQISDVSPL  213 (308)
T ss_dssp             -GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECTTSCCCBCGGG
T ss_pred             -hcCCCCCCEEECCCCcc-CcChh-hcCCCCCCEEEccCCccCccccc
Confidence             89999999999999755 45554 78899999999999999887653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=1.5e-17  Score=174.35  Aligned_cols=58  Identities=22%  Similarity=0.217  Sum_probs=34.6

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccc
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~   86 (422)
                      ++|+.|++++|.+.       .+|.  ..++|++|++++|.++.+|.  .+++|++|++++|+|+.++.
T Consensus        61 ~~L~~L~L~~N~l~-------~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~  118 (622)
T 3g06_A           61 AHITTLVIPDNNLT-------SLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA  118 (622)
T ss_dssp             TTCSEEEECSCCCS-------CCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC
T ss_pred             CCCcEEEecCCCCC-------CCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC
Confidence            46777777776543       1333  11566666666666666666  45666666666666666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.75  E-value=8.4e-18  Score=170.24  Aligned_cols=216  Identities=21%  Similarity=0.140  Sum_probs=142.1

Q ss_pred             CCeeeeeeChhhhhC----CCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEc
Q 014575            2 SRIKEIYLHPDTFTK----MCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEM   76 (422)
Q Consensus         2 s~~~~~~l~~~~f~~----m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L   76 (422)
                      ++++.++++...+..    +.+|++|++++|.+.+       +| ++.. ++|++|++++|.+..+|...  .+|++|++
T Consensus       153 ~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-------l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-------LP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-------CC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEEC
T ss_pred             CCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-------Cc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEEC
Confidence            345566665555543    3478999998887542       34 4555 88888888888888877643  58888888


Q ss_pred             cCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCC
Q 014575           77 PHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLK  156 (422)
Q Consensus        77 ~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~  156 (422)
                      ++|.+..++ .+..+++|+++....+.+.....      .+++|+.|++++|... .+|..   +++|+.|++++|...+
T Consensus       223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSE
T ss_pred             cCCcCCccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCc
Confidence            888888766 46777777777443333332211      2367888888887543 46652   4788888888876433


Q ss_pred             CCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCC
Q 014575          157 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLE  236 (422)
Q Consensus       157 ~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~  236 (422)
                       +|.+.  ++|+.|++++|.++.++..   .++|+.|++++|+ +..+|..   +++|+.|++++|. +..+|.   .++
T Consensus       292 -l~~~~--~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N~-l~~lp~---~l~  357 (454)
T 1jl5_A          292 -LSELP--PNLYYLNASSNEIRSLCDL---PPSLEELNVSNNK-LIELPAL---PPRLERLIASFNH-LAEVPE---LPQ  357 (454)
T ss_dssp             -ESCCC--TTCCEEECCSSCCSEECCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCT
T ss_pred             -ccCcC--CcCCEEECcCCcCCcccCC---cCcCCEEECCCCc-ccccccc---CCcCCEEECCCCc-cccccc---hhh
Confidence             44332  4777777777777766531   2467777777754 3446653   4677777777754 445666   356


Q ss_pred             CCCEEeccCccccccc
Q 014575          237 ALDSLIAEGTAIREVY  252 (422)
Q Consensus       237 ~L~~L~l~~n~l~~lp  252 (422)
                      +|+.|++++|.++.+|
T Consensus       358 ~L~~L~L~~N~l~~l~  373 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFP  373 (454)
T ss_dssp             TCCEEECCSSCCSSCC
T ss_pred             hccEEECCCCCCCcCC
Confidence            7777777777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.6e-17  Score=156.82  Aligned_cols=171  Identities=19%  Similarity=0.241  Sum_probs=142.2

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ++|++|+++++.++.+|..-.+++|++|++++|++..+..                           +..+++|++|+++
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------l~~l~~L~~L~l~   98 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---------------------------LANLKNLGWLFLD   98 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------GTTCTTCCEEECC
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---------------------------cccCCCCCEEECC
Confidence            7889999999999988764478899999999998887532                           4567889999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|. +..+|. +..+++|++|++++|. +..++.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|. +..++.
T Consensus        99 ~n~-l~~~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~  173 (291)
T 1h6t_A           99 ENK-VKDLSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP  173 (291)
T ss_dssp             SSC-CCCGGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred             CCc-CCCChh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh
Confidence            985 445665 8899999999999986 45568888899999999999999988 578899999999999975 455555


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                       +..+++|+.|++++|. +..+|. +..+++|+.|++++|.+...|
T Consensus       174 -l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             -hcCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCcccCCc
Confidence             8899999999999974 555664 888999999999999887655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=9.1e-17  Score=149.46  Aligned_cols=176  Identities=19%  Similarity=0.130  Sum_probs=143.5

Q ss_pred             CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchHH
Q 014575           19 KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQ   96 (422)
Q Consensus        19 ~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~   96 (422)
                      +.+.++++++.+.       .+|.++. .+|+.|++++|.+..++.. | .+++|++|+|++|.|+.+....        
T Consensus        15 ~~~~l~~~~~~l~-------~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------   78 (251)
T 3m19_A           15 GKKEVDCQGKSLD-------SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV--------   78 (251)
T ss_dssp             GGTEEECTTCCCS-------SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------
T ss_pred             CCeEEecCCCCcc-------ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH--------
Confidence            4567777776532       2554443 7899999999999988875 4 7899999999999998765432        


Q ss_pred             HHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCc
Q 014575           97 IISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGT  175 (422)
Q Consensus        97 l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n  175 (422)
                                       +..+++|++|+|++|...+..+..+..+++|++|+|++|......+. +..+++|++|+|++|
T Consensus        79 -----------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A           79 -----------------FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             -----------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             -----------------hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence                             56788999999999977666666678999999999999976554443 788999999999999


Q ss_pred             cCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575          176 AIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS  227 (422)
Q Consensus       176 ~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~  227 (422)
                      +|+.+|. .++.+++|+.|+|++|...+..|..+..+++|+.|++++|+....
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999987 689999999999999766655555788999999999999876544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=1.3e-16  Score=167.14  Aligned_cols=201  Identities=21%  Similarity=0.183  Sum_probs=121.6

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHH
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI   97 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l   97 (422)
                      .+++.|+++++.+.       .+|..+. ++|++|++++|.++.+|.  .+++|++|+|++|+|+.++.   .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-------~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-------CCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-------ccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence            46999999998753       3565444 899999999999999998  57899999999999998876   56677766


Q ss_pred             HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCC----------------
Q 014575           98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEI----------------  161 (422)
Q Consensus        98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~----------------  161 (422)
                      ....+.+.....      .+++|+.|++++|. +..+|..   +++|++|++++|... .+|..                
T Consensus       107 ~Ls~N~l~~l~~------~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          107 SIFSNPLTHLPA------LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             EECSCCCCCCCC------CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC
T ss_pred             ECcCCcCCCCCC------CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCC
Confidence            443333333221      34556666666653 3345542   356666666665432 23321                


Q ss_pred             --CCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCC
Q 014575          162 --SSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALD  239 (422)
Q Consensus       162 --~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~  239 (422)
                        ..+++|+.|+|++|.|+.+|..   +++|+.|++++| .+..+|..   +++|+.|++++| .+..+|   ..+++|+
T Consensus       176 l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~  244 (622)
T 3g06_A          176 LPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELK  244 (622)
T ss_dssp             CCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCC
T ss_pred             CcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCc
Confidence              1124555555555555555542   234444555443 23334432   355666666664 333455   3345666


Q ss_pred             EEeccCcccccccc
Q 014575          240 SLIAEGTAIREVYF  253 (422)
Q Consensus       240 ~L~l~~n~l~~lp~  253 (422)
                      .|++++|.|+.+|.
T Consensus       245 ~L~Ls~N~L~~lp~  258 (622)
T 3g06_A          245 ELMVSGNRLTSLPM  258 (622)
T ss_dssp             EEECCSSCCSCCCC
T ss_pred             EEECCCCCCCcCCc
Confidence            66666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=4.5e-20  Score=182.70  Aligned_cols=239  Identities=10%  Similarity=0.071  Sum_probs=145.7

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCC----CCC--------CCCCceEEEcc
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLP----SNI--------HPEKLVSIEMP   77 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP----~~~--------~~~~L~~L~L~   77 (422)
                      .+++.++++|+.|+|++|.+...  ....++..+.. ++|++|++++|.+..+.    ..+        .+++|++|+|+
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHhcCCCccEEECCCCCCCHH--HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            45678889999999998763311  00113444555 88999999988766443    222        56889999999


Q ss_pred             CCcccc-----ccccccCCcchHHHHHhhccCCCC--CCcchhhhcC---------CCCcEEeccCCCCC-cccc---cc
Q 014575           78 HGNIQQ-----LWDDVEHNGKLKQIISRACNFFTK--SPNHSLTLHL---------DKLVNLNLNNCKSL-RILP---AG  137 (422)
Q Consensus        78 ~~~l~~-----l~~~~~~l~~L~~l~~~~~~~~~~--~~~~~li~~l---------~~L~~L~L~~~~~l-~~lp---~~  137 (422)
                      +|.+..     ++..+..+++|++|....+.+.+.  ......+..+         ++|++|+|++|... ..+|   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            998876     333444455555442222211100  0011112223         67777777777544 3344   34


Q ss_pred             CCCCCCCCEEEeeCCCCCC-----CCc-CCCCCCCcCEEEeeCccC-----cccCccccCCCCCCEEecCCCCCCCc---
Q 014575          138 IFRLEFLKELDLWGCSKLK-----TLP-EISSAGNIEVMYLNGTAI-----EELPSSIECLSRLSALYLDNCKRLKS---  203 (422)
Q Consensus       138 i~~l~~L~~L~Ls~~~~l~-----~~p-~~~~l~~L~~L~L~~n~i-----~~lp~~i~~l~~L~~L~L~~~~~l~~---  203 (422)
                      +..+++|++|++++|....     ..| .+..+++|+.|+|++|.+     ..+|..+..+++|+.|+|++|.....   
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            5566777777777775431     234 566677777777777777     45666777777777777777654433   


Q ss_pred             -ccccc--cCCCCCcEEEccCCCCCC----CCCccc-CCCCCCCEEeccCcccccc
Q 014575          204 -LPSSL--CKLNSLNFIYLRWCSSLK----SLPDEL-GNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       204 -lp~~l--~~l~~L~~L~Ls~c~~l~----~lp~~~-~~l~~L~~L~l~~n~l~~l  251 (422)
                       +|..+  +.+++|+.|+|++|....    .+|..+ .++++|+.|++++|.++..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence             45555  337777777777765554    366665 5567777777777776643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=5.3e-17  Score=146.52  Aligned_cols=108  Identities=20%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             hcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCE
Q 014575          115 LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSA  192 (422)
Q Consensus       115 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~  192 (422)
                      +.+++|++|++++|...+..+..+.++++|++|++++|......+. +..+++|++|+|++|.|+.+|.. +..+++|+.
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence            3444555555555433322222234455555555555543322222 44555555555555555544443 345555555


Q ss_pred             EecCCCCCCCcccccccCCCCCcEEEccCC
Q 014575          193 LYLDNCKRLKSLPSSLCKLNSLNFIYLRWC  222 (422)
Q Consensus       193 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c  222 (422)
                      |++++|...+..+..+..+++|+.|++++|
T Consensus       129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EECCCCccceeCHHHhccCCCccEEEecCC
Confidence            555554332222222444555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=8.6e-17  Score=166.69  Aligned_cols=186  Identities=19%  Similarity=0.249  Sum_probs=150.0

Q ss_pred             hhhhhCCC-----CCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccc
Q 014575           11 PDTFTKMC-----KLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLW   85 (422)
Q Consensus        11 ~~~f~~m~-----~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~   85 (422)
                      +.+|.+++     +|+.|++++|.+.+       +|..+. ++|++|++++|.++.+| . .+++|+.|++++|+|++++
T Consensus        47 ~~~~~~l~~C~~~~L~~L~Ls~n~L~~-------lp~~l~-~~L~~L~Ls~N~l~~ip-~-~l~~L~~L~Ls~N~l~~ip  116 (571)
T 3cvr_A           47 NEAVSLLKECLINQFSELQLNRLNLSS-------LPDNLP-PQITVLEITQNALISLP-E-LPASLEYLDACDNRLSTLP  116 (571)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCSSCCSC-------CCSCCC-TTCSEEECCSSCCSCCC-C-CCTTCCEEECCSSCCSCCC
T ss_pred             cchhhhccccccCCccEEEeCCCCCCc-------cCHhHc-CCCCEEECcCCCCcccc-c-ccCCCCEEEccCCCCCCcc
Confidence            34677776     99999999987542       555443 78999999999999999 3 4689999999999998764


Q ss_pred             ccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCC
Q 014575           86 DDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAG  165 (422)
Q Consensus        86 ~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~  165 (422)
                      . +.                          .  +|++|+|++|...+ +|.   .+++|+.|++++|... .+|.  .++
T Consensus       117 ~-l~--------------------------~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~  160 (571)
T 3cvr_A          117 E-LP--------------------------A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE--LPT  160 (571)
T ss_dssp             C-CC--------------------------T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC--CCT
T ss_pred             h-hh--------------------------c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC--cCC
Confidence            3 21                          1  68999999986544 777   6899999999998755 4776  577


Q ss_pred             CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCC-------cEEEccCCCCCCCCCcccCCCCCC
Q 014575          166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSL-------NFIYLRWCSSLKSLPDELGNLEAL  238 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L-------~~L~Ls~c~~l~~lp~~~~~l~~L  238 (422)
                      +|+.|+|++|.|+.+|. +.  ++|+.|+|++| .+..+|. +..  +|       +.|+|++| .+..+|..+..+++|
T Consensus       161 ~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L  232 (571)
T 3cvr_A          161 SLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPT  232 (571)
T ss_dssp             TCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred             CcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence            99999999999999998 65  89999999996 4668888 654  77       99999996 556799988889999


Q ss_pred             CEEeccCccccc
Q 014575          239 DSLIAEGTAIRE  250 (422)
Q Consensus       239 ~~L~l~~n~l~~  250 (422)
                      +.|++++|.++.
T Consensus       233 ~~L~L~~N~l~~  244 (571)
T 3cvr_A          233 CTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSSCCH
T ss_pred             CEEEeeCCcCCC
Confidence            999999999874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.6e-17  Score=159.44  Aligned_cols=198  Identities=16%  Similarity=0.133  Sum_probs=149.6

Q ss_pred             CCCCCceEEEecCCCCCCCceeEEccCCC--CC-CCeeEEEecCCCCCCCCCC------CCCCCceEEEccCCccccccc
Q 014575           16 KMCKLRFLKFYNSKDDGENKCKVSYLVGP--GF-AEVRYLHWYGYPLKSLPSN------IHPEKLVSIEMPHGNIQQLWD   86 (422)
Q Consensus        16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l--~~-~~Lr~L~l~~~~l~~lP~~------~~~~~L~~L~L~~~~l~~l~~   86 (422)
                      .+++|+.|++++|.+.+.      .|..+  .. ++|++|++++|.+......      ..+++|++|+|++|++..++.
T Consensus        89 ~~~~L~~L~l~~n~l~~~------~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  162 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGT------MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC  162 (310)
T ss_dssp             HHSCCCEEEEESCCCBSC------CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred             ccCceeEEEeeCCEeccc------hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence            456799999999876543      55555  44 8899999999988753221      157899999999999877644


Q ss_pred             cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcc--cc--ccCCCCCCCCEEEeeCCCCCCCCcC--
Q 014575           87 DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI--LP--AGIFRLEFLKELDLWGCSKLKTLPE--  160 (422)
Q Consensus        87 ~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~Ls~~~~l~~~p~--  160 (422)
                      ..                         ++.+++|++|+|++|...+.  ++  ..+..+++|++|++++|.. +.+|.  
T Consensus       163 ~~-------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~  216 (310)
T 4glp_A          163 EQ-------------------------VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVC  216 (310)
T ss_dssp             TS-------------------------CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHH
T ss_pred             HH-------------------------hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHH
Confidence            32                         56778899999999876543  32  2235788999999999864 44443  


Q ss_pred             ---CCCCCCcCEEEeeCccCccc-CccccCC---CCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccC
Q 014575          161 ---ISSAGNIEVMYLNGTAIEEL-PSSIECL---SRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELG  233 (422)
Q Consensus       161 ---~~~l~~L~~L~L~~n~i~~l-p~~i~~l---~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~  233 (422)
                         +..+++|++|+|++|.++.+ |..+..+   ++|++|+|++|. +..+|..+.  ++|+.|+|++|+.. .+|. +.
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~  291 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLN-RAPQ-PD  291 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCC-SCCC-TT
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCC-CCch-hh
Confidence               46778999999999999876 7777766   699999999965 558888764  79999999987554 4555 67


Q ss_pred             CCCCCCEEeccCccccc
Q 014575          234 NLEALDSLIAEGTAIRE  250 (422)
Q Consensus       234 ~l~~L~~L~l~~n~l~~  250 (422)
                      .+++|+.|++++|+++.
T Consensus       292 ~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          292 ELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCSCEECSSTTTSC
T ss_pred             hCCCccEEECcCCCCCC
Confidence            78999999999998863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=7.1e-17  Score=168.78  Aligned_cols=172  Identities=19%  Similarity=0.210  Sum_probs=129.1

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      .+|++|+++++.+..+|..-.+++|+.|+|++|.|..+++                           +..+++|+.|+|+
T Consensus        43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---------------------------l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---------------------------LTNLKNLGWLFLD   95 (605)
T ss_dssp             TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---------------------------GGGCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---------------------------hccCCCCCEEECc
Confidence            7788888888888888754477888888888888776532                           4467778888888


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|. +..+| .+..+++|+.|+|++|.. ..++.+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|...+ ++.
T Consensus        96 ~N~-l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~  170 (605)
T 1m9s_A           96 ENK-IKDLS-SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP  170 (605)
T ss_dssp             SSC-CCCCT-TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG
T ss_pred             CCC-CCCCh-hhccCCCCCEEEecCCCC-CCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh
Confidence            874 44455 477888888888888764 4467788888888888888888877 567888888888888865444 433


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                       +..+++|+.|+|++|.. ..+| .+..+++|+.|+|++|.+...|.
T Consensus       171 -l~~l~~L~~L~Ls~N~i-~~l~-~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHI-SDLR-ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             -GTTCTTCCEEECCSSCC-CBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred             -hccCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence             77888888888888644 4454 47778888888888888776553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=5.2e-17  Score=169.82  Aligned_cols=229  Identities=17%  Similarity=0.172  Sum_probs=155.2

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccc---------
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQ---------   82 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~---------   82 (422)
                      ..|..+.+|+.|++.++.+...       + ......|+.+.+.++.....+....+++|+.|++++|.+.         
T Consensus       322 ~~~~~~~~L~~L~l~~~~~~~~-------~-~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  393 (635)
T 4g8a_A          322 KDFSYNFGWQHLELVNCKFGQF-------P-TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD  393 (635)
T ss_dssp             GGGGSCCCCSEEEEESCEESSC-------C-CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred             cccccchhhhhhhcccccccCc-------C-cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch
Confidence            3567778899999888653211       0 0001455566666555555444445555666665555543         


Q ss_pred             -----------------cccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCC
Q 014575           83 -----------------QLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLK  145 (422)
Q Consensus        83 -----------------~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~  145 (422)
                                       .....+..+++|+.+.....+...... ...+..+++++.++++.|......|..+..+++|+
T Consensus       394 ~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~  472 (635)
T 4g8a_A          394 FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  472 (635)
T ss_dssp             HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             hhhhhhhhhhccccccccccccccccccccchhhhhcccccccc-ccccccccccccccccccccccccccccccchhhh
Confidence                             333333344444433221111111111 12266788888999988877777777777889999


Q ss_pred             EEEeeCCCCCCC-Cc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCC
Q 014575          146 ELDLWGCSKLKT-LP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWC  222 (422)
Q Consensus       146 ~L~Ls~~~~l~~-~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c  222 (422)
                      .|++++|..... .| .+..+++|++|+|++|+|+.+ |..++.+++|++|+|++|+..+..|..+..+++|+.|+|++|
T Consensus       473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  552 (635)
T 4g8a_A          473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  552 (635)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred             hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence            999999875544 34 478888999999999999876 456888999999999997665555667888999999999998


Q ss_pred             CCCCCCCcccCCC-CCCCEEeccCcccc
Q 014575          223 SSLKSLPDELGNL-EALDSLIAEGTAIR  249 (422)
Q Consensus       223 ~~l~~lp~~~~~l-~~L~~L~l~~n~l~  249 (422)
                      +..+..|+.+..+ ++|+.|++++|++.
T Consensus       553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          553 HIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            8888888888887 67999999998875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.3e-16  Score=143.95  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=133.2

Q ss_pred             CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEe
Q 014575           47 AEVRYLHWYGYPLKSLPSNI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLN  124 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~  124 (422)
                      ++|++|++++|.+..+|...  .+++|++|++++|+++.++...                         +..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------~~~l~~L~~L~   82 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-------------------------FNKLTSLTYLN   82 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------------------------TTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh-------------------------cCCCCCcCEEE
Confidence            78999999999999888764  7899999999999988765432                         56788999999


Q ss_pred             ccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCC
Q 014575          125 LNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLK  202 (422)
Q Consensus       125 L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~  202 (422)
                      |++|...+..+..+.++++|++|++++|......+. +..+++|+.|+|++|.++.+|.. +..+++|+.|++++|... 
T Consensus        83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-  161 (208)
T 2o6s_A           83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-  161 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred             CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence            999976655555567999999999999976655453 78999999999999999988875 788999999999998544 


Q ss_pred             cccccccCCCCCcEEEccCCCCCCCCCcccCCCCC
Q 014575          203 SLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA  237 (422)
Q Consensus       203 ~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~  237 (422)
                            +.+++|+.|+++.|...+.+|+.++.++.
T Consensus       162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                  35668999999999999999998887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=3.2e-18  Score=165.66  Aligned_cols=198  Identities=19%  Similarity=0.243  Sum_probs=120.6

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCcccc--ccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575           47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQ--LWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL  123 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L  123 (422)
                      .+++.|++.++.+...+..+ .+++|++|++++|.+..  ++..+..+++|+++....+.+.+  ..+..++.+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEE
Confidence            34455555554444333222 44455555555554432  22233333444433221111100  112236677888888


Q ss_pred             eccCCCCCc--cccccCCCCCCCCEEEeeCCCCCCC--Cc-CCCCCC-CcCEEEeeCcc--C--cccCccccCCCCCCEE
Q 014575          124 NLNNCKSLR--ILPAGIFRLEFLKELDLWGCSKLKT--LP-EISSAG-NIEVMYLNGTA--I--EELPSSIECLSRLSAL  193 (422)
Q Consensus       124 ~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~~~~l~~--~p-~~~~l~-~L~~L~L~~n~--i--~~lp~~i~~l~~L~~L  193 (422)
                      ++++|..++  .++..+.++++|++|++++|..+..  ++ .+..++ +|++|+|++|.  +  ..+|..+..+++|+.|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            888885444  3666677788888888888833332  34 366677 88888888884  4  3677777888888888


Q ss_pred             ecCCCC-CCCcccccccCCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEeccCc
Q 014575          194 YLDNCK-RLKSLPSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAEGT  246 (422)
Q Consensus       194 ~L~~~~-~l~~lp~~l~~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n  246 (422)
                      ++++|. .....+..+..+++|+.|++++|.... .....++.+++|+.|++++|
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            888887 344666678888888888888885221 11124677888888888888

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.6e-16  Score=156.03  Aligned_cols=173  Identities=23%  Similarity=0.292  Sum_probs=139.2

Q ss_pred             eeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhh-cCCCCcEEeccC
Q 014575           49 VRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL-HLDKLVNLNLNN  127 (422)
Q Consensus        49 Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~-~l~~L~~L~L~~  127 (422)
                      -+.++..++.++.+|..+ ++.++.|+|++|+|+.++...                         +. .+++|++|+|++
T Consensus        20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~-------------------------~~~~l~~L~~L~L~~   73 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEW-------------------------TPTRLTNLHSLLLSH   73 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTS-------------------------SSSCCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhh-------------------------hhhcccccCEEECCC
Confidence            358899999999999876 457999999999999876542                         33 678899999999


Q ss_pred             CCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCccc
Q 014575          128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       128 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      |...+..|..+.++++|+.|+|++|......+ .+..+++|+.|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|
T Consensus        74 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~  152 (361)
T 2xot_A           74 NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFP  152 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCC
T ss_pred             CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeC
Confidence            97666666778899999999999987554444 488999999999999999977 567899999999999995 566677


Q ss_pred             ccc----cCCCCCcEEEccCCCCCCCCC-cccCCCCC--CCEEeccCcccc
Q 014575          206 SSL----CKLNSLNFIYLRWCSSLKSLP-DELGNLEA--LDSLIAEGTAIR  249 (422)
Q Consensus       206 ~~l----~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~--L~~L~l~~n~l~  249 (422)
                      ..+    ..+++|+.|+|++|.. ..+| ..+..++.  |+.|++++|.+.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCC-CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCC-CccCHHHhhhccHhhcceEEecCCCcc
Confidence            765    5799999999999654 4555 45666665  478999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.2e-16  Score=141.37  Aligned_cols=152  Identities=16%  Similarity=0.212  Sum_probs=117.0

Q ss_pred             CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCE
Q 014575           67 HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKE  146 (422)
Q Consensus        67 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~  146 (422)
                      .+++|++|++++|.+..++ +                          +..+++|++|++++| ....++ .+..+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~--------------------------l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~   92 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-G--------------------------IEYAHNIKDLTINNI-HATNYN-PISGLSNLER   92 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-T--------------------------GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCE
T ss_pred             hcCCccEEeccCCCccChH-H--------------------------HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCE
Confidence            4567888888888887654 2                          456778899999988 444554 4778899999


Q ss_pred             EEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcc-cCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCC
Q 014575          147 LDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEE-LPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       147 L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~  224 (422)
                      |++++|......| .++.+++|++|+|++|.++. .|..++.+++|++|++++|..++.+| .+..+++|+.|++++|..
T Consensus        93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A           93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred             EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC
Confidence            9999987665334 68888899999999999884 67778889999999999977677887 588889999999998754


Q ss_pred             CCCCCcccCCCCCCCEEeccCccccc
Q 014575          225 LKSLPDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       225 l~~lp~~~~~l~~L~~L~l~~n~l~~  250 (422)
                       ..++ .+..+++|+.|++++|++..
T Consensus       172 -~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          172 -HDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -CCCT-TGGGCSSCCEEEECBC----
T ss_pred             -cChH-HhccCCCCCEEEeeCcccCC
Confidence             4455 67788899999999988753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=1.9e-16  Score=150.77  Aligned_cols=173  Identities=20%  Similarity=0.252  Sum_probs=144.2

Q ss_pred             hhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCC
Q 014575           13 TFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        13 ~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      .+.++++|+.|++++|.+..       + .++.. ++|++|++++|.+..++.-..+++|++|++++|.++.+..     
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~-------~-~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-----  107 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKS-------V-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-----  107 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-------C-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-----
T ss_pred             chhhcCcccEEEccCCCccc-------C-hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-----
Confidence            35678899999999986431       2 34555 9999999999999999883389999999999999887521     


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEE
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY  171 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~  171 (422)
                                            +..+++|++|++++|.. ..++ .+..+++|+.|++++|... .++.+..+++|+.|+
T Consensus       108 ----------------------l~~l~~L~~L~L~~n~i-~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~  162 (291)
T 1h6t_A          108 ----------------------LKDLKKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLS  162 (291)
T ss_dssp             ----------------------GTTCTTCCEEECTTSCC-CCCG-GGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEE
T ss_pred             ----------------------hccCCCCCEEECCCCcC-CCCh-hhcCCCCCCEEEccCCcCC-cchhhccCCCCCEEE
Confidence                                  56788999999999864 4455 4889999999999998754 458899999999999


Q ss_pred             eeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCC
Q 014575          172 LNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK  226 (422)
Q Consensus       172 L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~  226 (422)
                      |++|.++.+++ +..+++|+.|++++| .+..+|. +..+++|+.|++++|+...
T Consensus       163 L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          163 LEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             ccCCccccchh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCcccC
Confidence            99999999887 999999999999996 5666776 8999999999999976543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=8.3e-16  Score=140.28  Aligned_cols=111  Identities=15%  Similarity=0.178  Sum_probs=69.0

Q ss_pred             CCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcE
Q 014575          139 FRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNF  216 (422)
Q Consensus       139 ~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~  216 (422)
                      .++++|+.|+|++|......+ .+..+++|++|+|++|.|+.+|.. +..+++|++|+|++|...+..|..+..+++|+.
T Consensus        54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  133 (220)
T 2v70_A           54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL  133 (220)
T ss_dssp             GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred             ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence            344445555555444333333 355555666666666666655543 566666777777766555555666677777777


Q ss_pred             EEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          217 IYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       217 L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      |+|++|...+..|..+..+++|+.|++++|.+.
T Consensus       134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             EECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            777776665655777777777888888887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.4e-16  Score=149.55  Aligned_cols=170  Identities=22%  Similarity=0.212  Sum_probs=129.8

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      .++..+++.++.+..++....+++|++|++++|.|+.+. +                          +..+++|++|+|+
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~--------------------------l~~l~~L~~L~L~   71 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G--------------------------MQFFTNLKELHLS   71 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T--------------------------GGGCTTCCEEECC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H--------------------------HhhCCCCCEEECC
Confidence            455666677777777773336778888888888877653 1                          4567788889998


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|. +..+|. +.++++|+.|++++|. ++.+|.+.. ++|+.|+|++|.++.+| .+..+++|+.|++++|+ +..+| 
T Consensus        72 ~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-  144 (263)
T 1xeu_A           72 HNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-  144 (263)
T ss_dssp             SSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-
T ss_pred             CCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-
Confidence            885 444555 7788899999999876 445665555 78999999999998876 58889999999999865 55666 


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      .+..+++|+.|++++|...+.  ..+..+++|+.|++++|.+...|
T Consensus       145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            588899999999998765544  66788899999999999887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=1.5e-15  Score=139.46  Aligned_cols=128  Identities=23%  Similarity=0.249  Sum_probs=63.3

Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-C-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecC
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-E-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLD  196 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~  196 (422)
                      |++|+|++|...+..|..+.++++|+.|+|++|.. +.+| . +..+++|+.|+|++|.|+.+|.. +..+++|+.|+|+
T Consensus        42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC  120 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence            44444444443333344444444455555555443 2222 1 34455555555555555555433 3455555555555


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          197 NCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       197 ~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      +|+ +..+|..+..+++|+.|+|++|...+..+..+..+++|+.|++++|.+.
T Consensus       121 ~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          121 CNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            532 3355555555555666666554333322334555666666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=1.3e-15  Score=138.93  Aligned_cols=112  Identities=21%  Similarity=0.205  Sum_probs=61.0

Q ss_pred             CCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCc
Q 014575          138 IFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLN  215 (422)
Q Consensus       138 i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~  215 (422)
                      +..+++|+.|+|++|......| .+..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|...+..|..+..+++|+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence            3344444444444443333323 344455555555555555555543 34555566666665544444455566666666


Q ss_pred             EEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          216 FIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       216 ~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      .|+|++|...+..+..+..+++|+.|++++|.+.
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6666665544444445666777777777777664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=6.5e-17  Score=158.05  Aligned_cols=209  Identities=18%  Similarity=0.165  Sum_probs=140.3

Q ss_pred             ccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCcccc-ccc-cccCCcchHHHHHh-hccCCCCCCcchhh
Q 014575           40 YLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQ-LWD-DVEHNGKLKQIISR-ACNFFTKSPNHSLT  114 (422)
Q Consensus        40 lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~-l~~-~~~~l~~L~~l~~~-~~~~~~~~~~~~li  114 (422)
                      +|.++. .++++|++++|.++.+|.. | .+++|++|+|++|++.+ ++. .+..+++++.+... .+++..  ..+..+
T Consensus        24 iP~~l~-~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~--l~~~~f  100 (350)
T 4ay9_X           24 IPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY--INPEAF  100 (350)
T ss_dssp             CCTTCC-TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE--ECTTSB
T ss_pred             cCcCcC-CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc--cCchhh
Confidence            555442 6788888888888888875 4 78888888888888755 333 23455555443111 111111  122336


Q ss_pred             hcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCC-CCcCEEEeeCccCcccCccccCCCCCC
Q 014575          115 LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSA-GNIEVMYLNGTAIEELPSSIECLSRLS  191 (422)
Q Consensus       115 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l-~~L~~L~L~~n~i~~lp~~i~~l~~L~  191 (422)
                      ..+++|++|++++|......+..+....++..|++.++..+..+|  .+..+ ..++.|+|++|+|+++|..+....+|+
T Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~  180 (350)
T 4ay9_X          101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD  180 (350)
T ss_dssp             CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred             hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence            778888888888876554444445566777888888877676666  34444 357888888888888888777778888


Q ss_pred             EEecCCCCCCCccccc-ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccC-ccccccccc
Q 014575          192 ALYLDNCKRLKSLPSS-LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG-TAIREVYFF  254 (422)
Q Consensus       192 ~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~-n~l~~lp~f  254 (422)
                      .|++.+++.++.+|.. +..+++|+.|+|++| .+..+|..  .+.+|+.|.+.+ +.++.+|.+
T Consensus       181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l  242 (350)
T 4ay9_X          181 ELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTL  242 (350)
T ss_dssp             EEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred             HHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence            8888887888888864 578888888888885 56677653  245566665544 356666653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=1.2e-15  Score=139.33  Aligned_cols=127  Identities=22%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             EEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCC
Q 014575          122 NLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCK  199 (422)
Q Consensus       122 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~  199 (422)
                      .++++++ .+..+|..+.  ++|+.|++++|......+ .+..+++|+.|+|++|.|+.+ |..+..+++|++|+|++|.
T Consensus        15 ~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            4455543 3445554442  456666666655433333 355566666666666666654 4456666666666666643


Q ss_pred             CCCccccc-ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          200 RLKSLPSS-LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       200 ~l~~lp~~-l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                       +..+|.. +..+++|+.|+|++|...+..|..+..+++|+.|++++|.++.+|
T Consensus        92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B           92 -ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             -CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence             3344433 455666666666665555555555666666666666666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=2.4e-16  Score=164.84  Aligned_cols=172  Identities=19%  Similarity=0.235  Sum_probs=141.3

Q ss_pred             hhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCc
Q 014575           14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNG   92 (422)
Q Consensus        14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~   92 (422)
                      +..|++|+.|++++|.+..       ++ ++.. ++|++|++++|.+..+|....+++|+.|+|++|.|..++ .     
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-------l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~-----  104 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-------VQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-S-----  104 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-------CT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-T-----
T ss_pred             hhcCCCCCEEECcCCCCCC-------Ch-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-h-----
Confidence            5678899999999876431       23 4555 999999999999999988448999999999999988642 1     


Q ss_pred             chHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEe
Q 014575           93 KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL  172 (422)
Q Consensus        93 ~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L  172 (422)
                                           +..+++|+.|+|++|... .++. +..+++|+.|+|++|... .++.+..+++|+.|+|
T Consensus       105 ---------------------l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~L  160 (605)
T 1m9s_A          105 ---------------------LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSL  160 (605)
T ss_dssp             ---------------------STTCTTCCEEECTTSCCC-CCGG-GGGCTTCSEEECCSSCCC-CCGGGGSCTTCSEEEC
T ss_pred             ---------------------hccCCCCCEEEecCCCCC-CCcc-ccCCCccCEEECCCCccC-CchhhcccCCCCEEEC
Confidence                                 557888999999998644 4554 778999999999998754 4588899999999999


Q ss_pred             eCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCC
Q 014575          173 NGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLK  226 (422)
Q Consensus       173 ~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~  226 (422)
                      ++|.|+.+++ +..+++|+.|+|++|. +..+|. +..+++|+.|+|++|+..+
T Consensus       161 s~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~-l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          161 EDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEECCSEEEEC
T ss_pred             cCCcCCCchh-hccCCCCCEEECcCCC-CCCChH-HccCCCCCEEEccCCcCcC
Confidence            9999998877 8999999999999964 555664 8899999999999986654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=1.3e-15  Score=139.03  Aligned_cols=108  Identities=16%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             CCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEcc
Q 014575          144 LKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR  220 (422)
Q Consensus       144 L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls  220 (422)
                      ++.|+|++|......|  .+..+++|+.|+|++|.|+.++. .+..+++|++|+|++|...+..|..+..+++|++|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            3445555544333222  14444455555555555554443 34445555555555543333333334445555555555


Q ss_pred             CCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          221 WCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       221 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      +|...+..|..+..+++|+.|++++|.++.+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence            5444444444444555555555555554444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=5.9e-16  Score=138.59  Aligned_cols=148  Identities=12%  Similarity=0.119  Sum_probs=118.1

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ++|++|+++++.+..+|.-..+++|++|++++|.+..+. .                          +..+++|++|+++
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~--------------------------l~~l~~L~~L~l~   96 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-P--------------------------ISGLSNLERLRIM   96 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-G--------------------------GTTCTTCCEEEEE
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-h--------------------------hhcCCCCCEEEeE
Confidence            778899999998888884337889999999988665432 1                          5577889999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCcc-CcccCccccCCCCCCEEecCCCCCCCcc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA-IEELPSSIECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~-i~~lp~~i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      +|...+..|..+..+++|++|++++|......| .+..+++|++|+|++|. ++.+| .+..+++|+.|++++|. +..+
T Consensus        97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~  174 (197)
T 4ezg_A           97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDY  174 (197)
T ss_dssp             CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCC
T ss_pred             CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcCh
Confidence            987776677778889999999999987665555 58888899999999997 88887 68889999999999865 4556


Q ss_pred             cccccCCCCCcEEEccCCCC
Q 014575          205 PSSLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       205 p~~l~~l~~L~~L~Ls~c~~  224 (422)
                      + .+..+++|+.|++++|+.
T Consensus       175 ~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          175 R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             T-TGGGCSSCCEEEECBC--
T ss_pred             H-HhccCCCCCEEEeeCccc
Confidence            6 578889999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=3.4e-15  Score=137.06  Aligned_cols=128  Identities=20%  Similarity=0.270  Sum_probs=66.5

Q ss_pred             cEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCC
Q 014575          121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNC  198 (422)
Q Consensus       121 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~  198 (422)
                      +.++.+++ .++.+|..+.  ++|++|+|++|...+..| .+..+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus        22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            34555443 3445554332  555566666555444434 355555566666666655555533 355555666666554


Q ss_pred             CCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          199 KRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       199 ~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +..+..+..+..+++|+.|+|++|. +..+|..+..+++|+.|++++|.++.+|
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccC
Confidence            3332222334555556666665533 3355555555555666666665555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=1.4e-15  Score=148.64  Aligned_cols=216  Identities=18%  Similarity=0.124  Sum_probs=144.4

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCC-CCC-CCeeEEEecCCCC-CCCCCC-C-CCCCceE-EEccCCccccccc-cccC
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVG-PGF-AEVRYLHWYGYPL-KSLPSN-I-HPEKLVS-IEMPHGNIQQLWD-DVEH   90 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~-l~~-~~Lr~L~l~~~~l-~~lP~~-~-~~~~L~~-L~L~~~~l~~l~~-~~~~   90 (422)
                      ++|+.|+|++|.+.       .+|.+ +.. ++|++|++++|.+ +.+|.. | ++++|.+ +.+.+|+|..+.+ .+..
T Consensus        30 ~~l~~L~Ls~N~i~-------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~  102 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN  102 (350)
T ss_dssp             TTCSEEEEESCCCS-------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred             CCCCEEEccCCcCC-------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence            46677777776532       24443 444 6777777777765 345543 3 5555544 4455566766643 3456


Q ss_pred             CcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCcccccc-CCCC-CCCCEEEeeCCCCCCCCcCCCCCCCcC
Q 014575           91 NGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAG-IFRL-EFLKELDLWGCSKLKTLPEISSAGNIE  168 (422)
Q Consensus        91 l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~-i~~l-~~L~~L~Ls~~~~l~~~p~~~~l~~L~  168 (422)
                      +++|+++....+.+.......  +....++..|++.++..+..+|.. +..+ ..++.|++++|......+.....++|+
T Consensus       103 l~~L~~L~l~~n~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~  180 (350)
T 4ay9_X          103 LPNLQYLLISNTGIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD  180 (350)
T ss_dssp             CTTCCEEEEEEECCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred             ccccccccccccccccCCchh--hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence            666666633333322222111  334556788899887777777653 4444 468889999987544334555667899


Q ss_pred             EEEee-CccCcccCc-cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCc
Q 014575          169 VMYLN-GTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGT  246 (422)
Q Consensus       169 ~L~L~-~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n  246 (422)
                      .|++. +|.++.+|. .++.+++|++|+|++| .+..+|..  .+.+|+.|.+.+|+.++.+|. +..+++|+.+++.++
T Consensus       181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          181 ELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             EEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             HHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            99997 478889986 4688999999999995 57788864  477888888888889999995 788899999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.64  E-value=3.9e-15  Score=154.23  Aligned_cols=159  Identities=23%  Similarity=0.256  Sum_probs=133.3

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      .+|+.|+++++.+..+|..+ +++|++|+|++|+|+.++ +                            .+++|++|+|+
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip-~----------------------------~l~~L~~L~Ls  108 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP-E----------------------------LPASLEYLDAC  108 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC-C----------------------------CCTTCCEEECC
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc-c----------------------------ccCCCCEEEcc
Confidence            48999999999999999877 478999999999998764 2                            24679999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|...+ +|. +.+  +|+.|+|++|...+ +|.  .+++|+.|+|++|.|+.+|.   .+++|+.|+|++|+ ++.+|.
T Consensus       109 ~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~  177 (571)
T 3cvr_A          109 DNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE  177 (571)
T ss_dssp             SSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC
T ss_pred             CCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch
Confidence            996554 888 655  99999999987555 777  68899999999999999997   67899999999975 556998


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCC-------CEEeccCcccccccc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEAL-------DSLIAEGTAIREVYF  253 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L-------~~L~l~~n~l~~lp~  253 (422)
                       +.  ++|+.|+|++| .+..+|. +..  +|       +.|++++|.|+.+|.
T Consensus       178 -l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~  224 (571)
T 3cvr_A          178 -LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPE  224 (571)
T ss_dssp             -CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCCCCCG
T ss_pred             -hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcceecCH
Confidence             65  99999999997 4558888 654  77       999999999998886

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=1.4e-15  Score=132.35  Aligned_cols=135  Identities=24%  Similarity=0.204  Sum_probs=116.4

Q ss_pred             cCCCCcEEeccCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcc-cCccccCCCCCCEE
Q 014575          116 HLDKLVNLNLNNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE-LPSSIECLSRLSAL  193 (422)
Q Consensus       116 ~l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L  193 (422)
                      ..++|+.|++++|... +.+|..+..+++|+.|++++|.... ++.+..+++|+.|+|++|.++. +|..+..+++|+.|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3477999999999765 5889888899999999999998554 4889999999999999999997 78778889999999


Q ss_pred             ecCCCCCCCccc--ccccCCCCCcEEEccCCCCCCCCCc----ccCCCCCCCEEeccCcccccccc
Q 014575          194 YLDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       194 ~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l~~lp~----~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      ++++|. +..+|  ..+..+++|+.|++++|... .+|.    .+..+++|+.|++++|.+.++|.
T Consensus       101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            999975 56665  67899999999999997655 4554    78999999999999999987764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=1.7e-16  Score=153.53  Aligned_cols=198  Identities=17%  Similarity=0.171  Sum_probs=158.6

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CC--CCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575           47 AEVRYLHWYGYPLKSLPSNI-HP--EKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL  123 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~-~~--~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L  123 (422)
                      ..++.|+++++.+.  |..+ .+  .+++.|++++|.+.+.+.....+++|+++....+.+. ....+..+..+++|++|
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEE
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEE
Confidence            34778888887665  3323 33  7999999999999998887888888888844333321 11244558899999999


Q ss_pred             eccCCCCCccccccCCCCCCCCEEEeeCCCCCCC--CcC-CCCCCCcCEEEeeCc-cCcc--cCccccCCC-CCCEEecC
Q 014575          124 NLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKT--LPE-ISSAGNIEVMYLNGT-AIEE--LPSSIECLS-RLSALYLD  196 (422)
Q Consensus       124 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~--~p~-~~~l~~L~~L~L~~n-~i~~--lp~~i~~l~-~L~~L~L~  196 (422)
                      ++++|...+..|..+..+++|++|++++|..++.  ++. +..+++|++|++++| .++.  ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            9999987778888898999999999999954542  553 777899999999999 9984  788889999 99999999


Q ss_pred             CCC--CC-CcccccccCCCCCcEEEccCCC-CCCCCCcccCCCCCCCEEeccCcc
Q 014575          197 NCK--RL-KSLPSSLCKLNSLNFIYLRWCS-SLKSLPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       197 ~~~--~l-~~lp~~l~~l~~L~~L~Ls~c~-~l~~lp~~~~~l~~L~~L~l~~n~  247 (422)
                      +|.  .. +.+|..+..+++|+.|++++|. ..+..+..+..+++|+.|++++|.
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            984  23 5678888899999999999998 445777788999999999999995

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=6.2e-15  Score=144.57  Aligned_cols=171  Identities=19%  Similarity=0.196  Sum_probs=135.4

Q ss_pred             ceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCCC---CCCCceEEEccCCccccccccccCCcchHHH
Q 014575           21 RFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSNI---HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQI   97 (422)
Q Consensus        21 ~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~~---~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l   97 (422)
                      +.++++++.+.       .+|.++. ..+++|++++|.+..+|...   .+++|++|+|++|+|..+..+.         
T Consensus        21 ~~l~c~~~~l~-------~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~---------   83 (361)
T 2xot_A           21 NILSCSKQQLP-------NVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA---------   83 (361)
T ss_dssp             TEEECCSSCCS-------SCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT---------
T ss_pred             CEEEeCCCCcC-------ccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh---------
Confidence            46666665532       2454433 67999999999999998764   7899999999999999875432         


Q ss_pred             HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCcc
Q 014575           98 ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA  176 (422)
Q Consensus        98 ~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~  176 (422)
                                      +..+++|++|+|++|......+..+.++++|+.|+|++|......| .+..+++|+.|+|++|.
T Consensus        84 ----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A           84 ----------------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             ----------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ----------------ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence                            6678899999999997665555668899999999999998766656 58999999999999999


Q ss_pred             CcccCccc----cCCCCCCEEecCCCCCCCccc-ccccCCCC--CcEEEccCCCCC
Q 014575          177 IEELPSSI----ECLSRLSALYLDNCKRLKSLP-SSLCKLNS--LNFIYLRWCSSL  225 (422)
Q Consensus       177 i~~lp~~i----~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~--L~~L~Ls~c~~l  225 (422)
                      |+.+|..+    ..+++|+.|+|++|+ +..+| ..+..++.  |+.|+|++|+..
T Consensus       148 l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          148 ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999875    679999999999965 55565 45677776  488999997643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=4.4e-17  Score=169.24  Aligned_cols=183  Identities=15%  Similarity=0.115  Sum_probs=141.7

Q ss_pred             CCCCceEEEccCCccccccccccCCcchHHHHHh-----------hccCCCCCCcchhhhcCCCCcEEe-ccCCCCCccc
Q 014575           67 HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISR-----------ACNFFTKSPNHSLTLHLDKLVNLN-LNNCKSLRIL  134 (422)
Q Consensus        67 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~-----------~~~~~~~~~~~~li~~l~~L~~L~-L~~~~~l~~l  134 (422)
                      ..++|+.|+|++|+++.+|+.+..+++|+.+...           ..........+..++.+++|+.|+ ++.+ ....+
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchh
Confidence            5678999999999999999988888888877210           001111234445578888888888 4443 12222


Q ss_pred             cc------cCC--CCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          135 PA------GIF--RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       135 p~------~i~--~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +.      .+.  ....|+.|+|++|.. ..+|.++.+++|+.|+|++|.|+.+|..++.+++|+.|+|++|. +..+| 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-
Confidence            11      011  123599999999864 45788999999999999999999999999999999999999965 55588 


Q ss_pred             cccCCCCCcEEEccCCCCCCCC-CcccCCCCCCCEEeccCcccccccc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSL-PDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      .++.+++|+.|+|++|...+.. |..++.+++|+.|++++|.++.+|+
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            7999999999999998766665 9999999999999999999998765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=7.2e-17  Score=158.41  Aligned_cols=238  Identities=15%  Similarity=0.070  Sum_probs=130.9

Q ss_pred             hhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-C-CeeEEEecCCCCCCCCC-CC-C-----CCCceEEEccCCcc
Q 014575           11 PDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-A-EVRYLHWYGYPLKSLPS-NI-H-----PEKLVSIEMPHGNI   81 (422)
Q Consensus        11 ~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~-~Lr~L~l~~~~l~~lP~-~~-~-----~~~L~~L~L~~~~l   81 (422)
                      +..+...++|+.|++++|.+.....  ..+.+.+.. + +|++|++++|.+..... .+ .     .++|++|+|++|.+
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            3444455569999999887543211  001122333 4 79999999998876543 22 2     27899999999988


Q ss_pred             cccccc-----ccCC-cchHHHHHhhccCCCCCC--cchhhhc-CCCCcEEeccCCCCCc----cccccCCCCC-CCCEE
Q 014575           82 QQLWDD-----VEHN-GKLKQIISRACNFFTKSP--NHSLTLH-LDKLVNLNLNNCKSLR----ILPAGIFRLE-FLKEL  147 (422)
Q Consensus        82 ~~l~~~-----~~~l-~~L~~l~~~~~~~~~~~~--~~~li~~-l~~L~~L~L~~~~~l~----~lp~~i~~l~-~L~~L  147 (422)
                      ......     +..+ ++|+++....+.+.+...  ....+.. .++|++|+|++|....    .++..+..++ +|++|
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            764322     2222 344444222222211110  0111223 2467777777765442    3333344444 77777


Q ss_pred             EeeCCCCCCCCc-C----CCCC-CCcCEEEeeCccCcc-----cCccccC-CCCCCEEecCCCCCCCccc----ccccCC
Q 014575          148 DLWGCSKLKTLP-E----ISSA-GNIEVMYLNGTAIEE-----LPSSIEC-LSRLSALYLDNCKRLKSLP----SSLCKL  211 (422)
Q Consensus       148 ~Ls~~~~l~~~p-~----~~~l-~~L~~L~L~~n~i~~-----lp~~i~~-l~~L~~L~L~~~~~l~~lp----~~l~~l  211 (422)
                      +|++|......+ .    +... ++|+.|+|++|.|+.     ++..+.. .++|++|+|++|.....-+    ..+..+
T Consensus       173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l  252 (362)
T 3goz_A          173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL  252 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred             eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence            777776544443 1    2333 477777777777765     5555554 3477777777754333222    234556


Q ss_pred             CCCcEEEccCCCC-------CCCCCcccCCCCCCCEEeccCccccc
Q 014575          212 NSLNFIYLRWCSS-------LKSLPDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       212 ~~L~~L~Ls~c~~-------l~~lp~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      ++|+.|++++|..       ...++..+..+++|+.|++++|.+..
T Consensus       253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            7777777777641       12333455566677777777776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=6e-17  Score=160.19  Aligned_cols=210  Identities=15%  Similarity=0.066  Sum_probs=134.2

Q ss_pred             cCCCCC-CCeeEEEecCCCCCC-----CCCCC-CCCCceEEEccCCcccccc----ccc-------cCCcchHHHHHhhc
Q 014575           41 LVGPGF-AEVRYLHWYGYPLKS-----LPSNI-HPEKLVSIEMPHGNIQQLW----DDV-------EHNGKLKQIISRAC  102 (422)
Q Consensus        41 p~~l~~-~~Lr~L~l~~~~l~~-----lP~~~-~~~~L~~L~L~~~~l~~l~----~~~-------~~l~~L~~l~~~~~  102 (422)
                      +..+.. ++|++|++++|.+..     ++..+ .+++|++|+|+++.+..+.    .++       ..+++|++|....+
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            333333 789999999998765     33334 6789999999998665432    222       45555655533333


Q ss_pred             cCCCCC--CcchhhhcCCCCcEEeccCCCCCcc----ccccCCCC---------CCCCEEEeeCCCCC-CCCc----CCC
Q 014575          103 NFFTKS--PNHSLTLHLDKLVNLNLNNCKSLRI----LPAGIFRL---------EFLKELDLWGCSKL-KTLP----EIS  162 (422)
Q Consensus       103 ~~~~~~--~~~~li~~l~~L~~L~L~~~~~l~~----lp~~i~~l---------~~L~~L~Ls~~~~l-~~~p----~~~  162 (422)
                      .+.+..  ..+..+..+++|++|+|++|.....    ++..+..+         ++|++|++++|... ..+|    .+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            322211  1333467777888888887765322    22223333         77888888887654 3344    245


Q ss_pred             CCCCcCEEEeeCccCc------ccCccccCCCCCCEEecCCCCCC----CcccccccCCCCCcEEEccCCCCCCC----C
Q 014575          163 SAGNIEVMYLNGTAIE------ELPSSIECLSRLSALYLDNCKRL----KSLPSSLCKLNSLNFIYLRWCSSLKS----L  228 (422)
Q Consensus       163 ~l~~L~~L~L~~n~i~------~lp~~i~~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~Ls~c~~l~~----l  228 (422)
                      .+++|++|+|++|.|+      -+|..+..+++|+.|+|++|...    +.+|..+..+++|+.|+|++|...+.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            5677888888888777      23336777788888888876643    56777777778888888887765443    4


Q ss_pred             Cccc--CCCCCCCEEeccCccccc
Q 014575          229 PDEL--GNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       229 p~~~--~~l~~L~~L~l~~n~l~~  250 (422)
                      |..+  +.+++|+.|++++|.++.
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHhhccCCCeEEEECcCCcCCH
Confidence            5555  347778888888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=2.2e-17  Score=166.62  Aligned_cols=16  Identities=0%  Similarity=0.146  Sum_probs=8.7

Q ss_pred             hhCCCCCceEEEecCC
Q 014575           14 FTKMCKLRFLKFYNSK   29 (422)
Q Consensus        14 f~~m~~L~~L~l~~~~   29 (422)
                      |..+++|+.|++++|.
T Consensus        24 ~~~~~~L~~L~L~~~~   39 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCG   39 (461)
T ss_dssp             HHHHTTCSEEEEESSC
T ss_pred             HhhcCCccEEEccCCC
Confidence            4455555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=2e-14  Score=134.74  Aligned_cols=170  Identities=18%  Similarity=0.203  Sum_probs=133.6

Q ss_pred             CCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcch
Q 014575           16 KMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKL   94 (422)
Q Consensus        16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L   94 (422)
                      ++.++..+++.++...     .  ++ .+.. ++|++|++++|.+..+|.--.+++|++|++++|.|..+..        
T Consensus        17 ~l~~l~~l~l~~~~i~-----~--~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--------   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-----D--LV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--------   80 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-----S--EE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--------
T ss_pred             HHHHHHHHHhcCCCcc-----c--cc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--------
Confidence            3445666667665432     1  22 2333 8999999999999999943388999999999999887632        


Q ss_pred             HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeC
Q 014575           95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG  174 (422)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~  174 (422)
                                         +..+++|++|+|++|. +..+|. +.. ++|+.|++++|. ++.++.+..+++|+.|+|++
T Consensus        81 -------------------l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           81 -------------------LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRN  137 (263)
T ss_dssp             -------------------GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTT
T ss_pred             -------------------hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEEEccCCc-cCCChhhcCcccccEEECCC
Confidence                               4577889999999985 455665 334 999999999986 45578899999999999999


Q ss_pred             ccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575          175 TAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS  227 (422)
Q Consensus       175 n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~  227 (422)
                      |.|+.+| .+..+++|+.|++++|... .+ ..+..+++|+.|++++|.....
T Consensus       138 N~i~~~~-~l~~l~~L~~L~L~~N~i~-~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          138 NKLKSIV-MLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBCG-GGGGCTTCCEEECTTSCCC-BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCCCCh-HHccCCCCCEEECCCCcCc-ch-HHhccCCCCCEEeCCCCcccCC
Confidence            9999997 6899999999999997654 44 5688999999999999765443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=4.5e-17  Score=169.15  Aligned_cols=192  Identities=19%  Similarity=0.153  Sum_probs=141.6

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCc-------------ccc-ccccccCCcchHHHH-Hhhcc---CCCC
Q 014575           47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGN-------------IQQ-LWDDVEHNGKLKQII-SRACN---FFTK  107 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~-------------l~~-l~~~~~~l~~L~~l~-~~~~~---~~~~  107 (422)
                      ++|+.|++++|.++.+|..+ ++++|++|+++++.             +.+ .++.+..+++|+.+. .....   +...
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            78889999999999999888 78899999997664             111 223345555665552 11110   0000


Q ss_pred             CCcchhhhc--CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccc
Q 014575          108 SPNHSLTLH--LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSI  184 (422)
Q Consensus       108 ~~~~~li~~--l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i  184 (422)
                      ....+.+..  ...|+.|+|++|. +..+|. +.++++|+.|+|++|... .+| .++.+++|+.|+|++|.|+.+| .+
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l  504 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GV  504 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred             hhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence            000000111  1258999999985 556887 999999999999999765 676 6999999999999999999998 89


Q ss_pred             cCCCCCCEEecCCCCCCCcc-cccccCCCCCcEEEccCCCCCCCCCccc----CCCCCCCEEec
Q 014575          185 ECLSRLSALYLDNCKRLKSL-PSSLCKLNSLNFIYLRWCSSLKSLPDEL----GNLEALDSLIA  243 (422)
Q Consensus       185 ~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~c~~l~~lp~~~----~~l~~L~~L~l  243 (422)
                      +.+++|+.|+|++|...+.. |..++.+++|+.|+|++|+..+. |...    ..+++|+.|++
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence            99999999999997665554 99999999999999999765554 4333    34788998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=6.9e-15  Score=125.33  Aligned_cols=127  Identities=20%  Similarity=0.162  Sum_probs=107.0

Q ss_pred             CCCCcEEeccCCCCC-ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcc-cCccccCCCCCCEEe
Q 014575          117 LDKLVNLNLNNCKSL-RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE-LPSSIECLSRLSALY  194 (422)
Q Consensus       117 l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~  194 (422)
                      .++|+.|++++|... +.+|..+..+++|+.|++++|..... +.++.+++|++|+|++|.++. +|..++.+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            467999999999766 58898888999999999999975544 889999999999999999997 787788899999999


Q ss_pred             cCCCCCCCccc--ccccCCCCCcEEEccCCCCCCCCC---cccCCCCCCCEEeccC
Q 014575          195 LDNCKRLKSLP--SSLCKLNSLNFIYLRWCSSLKSLP---DELGNLEALDSLIAEG  245 (422)
Q Consensus       195 L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~~l~~lp---~~~~~l~~L~~L~l~~  245 (422)
                      +++|. +..+|  ..+..+++|+.|++++|...+..+   ..+..+++|+.|++++
T Consensus        95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99976 44443  779999999999999986544433   3688899999998863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=3.1e-14  Score=126.95  Aligned_cols=127  Identities=17%  Similarity=0.151  Sum_probs=110.6

Q ss_pred             cEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC--CCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCC
Q 014575          121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDN  197 (422)
Q Consensus       121 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~  197 (422)
                      +.++++++ .++.+|..+..  +|+.|++++|......+.  +..+++|++|+|++|.|+.+ |..++.+++|++|+|++
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            68899997 56888886643  899999999976655553  88999999999999999977 67899999999999999


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccc
Q 014575          198 CKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       198 ~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      |+..+..|..+..+++|+.|+|++|...+..|..+..+++|+.|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            87666666678999999999999998888889999999999999999999873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=2.8e-17  Score=165.95  Aligned_cols=233  Identities=15%  Similarity=0.141  Sum_probs=149.8

Q ss_pred             CCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-----CC--CCCCceEEEccCCcccc----
Q 014575           16 KMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-----NI--HPEKLVSIEMPHGNIQQ----   83 (422)
Q Consensus        16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-----~~--~~~~L~~L~L~~~~l~~----   83 (422)
                      ..++|+.|++++|.+....  ...++..+.. ++|++|++++|++...+.     .+  ..++|++|++++|.+..    
T Consensus       140 ~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             CCCcceEEECCCCCCCHHH--HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence            3567888888887643211  0112333333 778888888887654221     11  24578888888887765    


Q ss_pred             -ccccccCCcchHHHHHhhccCCCCC---CcchhhhcCCCCcEEeccCCCCCcc----ccccCCCCCCCCEEEeeCCCCC
Q 014575           84 -LWDDVEHNGKLKQIISRACNFFTKS---PNHSLTLHLDKLVNLNLNNCKSLRI----LPAGIFRLEFLKELDLWGCSKL  155 (422)
Q Consensus        84 -l~~~~~~l~~L~~l~~~~~~~~~~~---~~~~li~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~~~~l  155 (422)
                       +...+..+++|+++....+.+.+..   ..+.++..+++|++|++++|.....    ++..+.++++|++|++++|...
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence             2333444455554422111111100   0012233578899999999855443    6777777899999999998643


Q ss_pred             CCCc-CC-----CCCCCcCEEEeeCccCcc-----cCccccCCCCCCEEecCCCCCCCcccccccC-----CCCCcEEEc
Q 014575          156 KTLP-EI-----SSAGNIEVMYLNGTAIEE-----LPSSIECLSRLSALYLDNCKRLKSLPSSLCK-----LNSLNFIYL  219 (422)
Q Consensus       156 ~~~p-~~-----~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~-----l~~L~~L~L  219 (422)
                      ...+ .+     ...++|+.|+|++|.++.     +|..+..+++|+.|++++|......+..+..     .++|+.|++
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            2222 11     233689999999998874     5677788899999999997544333333332     678999999


Q ss_pred             cCCCCCC----CCCcccCCCCCCCEEeccCccccc
Q 014575          220 RWCSSLK----SLPDELGNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       220 s~c~~l~----~lp~~~~~l~~L~~L~l~~n~l~~  250 (422)
                      ++|....    .+|..+..+++|++|++++|.++.
T Consensus       378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            9986654    778888888999999999998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.53  E-value=8.4e-16  Score=150.75  Aligned_cols=224  Identities=11%  Similarity=0.018  Sum_probs=131.8

Q ss_pred             eEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCC-----CC-CCC-CceEEEccCCcccccc-ccccCC-
Q 014575           22 FLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPS-----NI-HPE-KLVSIEMPHGNIQQLW-DDVEHN-   91 (422)
Q Consensus        22 ~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~-----~~-~~~-~L~~L~L~~~~l~~l~-~~~~~l-   91 (422)
                      +++++.|.+++.      +|..+.. .+|++|++++|.+...+.     .+ .++ +|++|+|++|.|.... ..+..+ 
T Consensus         2 ~~~ls~n~~~~~------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l   75 (362)
T 3goz_A            2 NYKLTLHPGSNP------VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL   75 (362)
T ss_dssp             EEECCCCTTCCH------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             ccccccccchHH------HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence            456666665433      4444444 679999999999998874     33 566 8999999999998752 222221 


Q ss_pred             ----cchHHHHHhhccCCCCC--CcchhhhcC-CCCcEEeccCCCCCcccccc----CCC-CCCCCEEEeeCCCCCCCCc
Q 014575           92 ----GKLKQIISRACNFFTKS--PNHSLTLHL-DKLVNLNLNNCKSLRILPAG----IFR-LEFLKELDLWGCSKLKTLP  159 (422)
Q Consensus        92 ----~~L~~l~~~~~~~~~~~--~~~~li~~l-~~L~~L~L~~~~~l~~lp~~----i~~-l~~L~~L~Ls~~~~l~~~p  159 (422)
                          ++|+++....+.+.+..  .....+..+ ++|++|+|++|......+..    +.. .++|++|+|++|......+
T Consensus        76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  155 (362)
T 3goz_A           76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS  155 (362)
T ss_dssp             HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred             hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence                44554422222222111  111113344 67788888877654433322    223 2577888888776543222


Q ss_pred             -----CCCCCC-CcCEEEeeCccCcccCc-----cccCC-CCCCEEecCCCCCCC----cccccccC-CCCCcEEEccCC
Q 014575          160 -----EISSAG-NIEVMYLNGTAIEELPS-----SIECL-SRLSALYLDNCKRLK----SLPSSLCK-LNSLNFIYLRWC  222 (422)
Q Consensus       160 -----~~~~l~-~L~~L~L~~n~i~~lp~-----~i~~l-~~L~~L~L~~~~~l~----~lp~~l~~-l~~L~~L~Ls~c  222 (422)
                           .+..++ +|++|+|++|.++..+.     .+... ++|+.|+|++|....    .++..+.. .++|+.|+|++|
T Consensus       156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence                 123333 78888888887775442     34444 478888888765332    15555555 347888888876


Q ss_pred             CCCCCCC----cccCCCCCCCEEeccCcccccc
Q 014575          223 SSLKSLP----DELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       223 ~~l~~lp----~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      .....-+    ..+..+++|+.|++++|.+..+
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i  268 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM  268 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence            5443322    3346667788888888775544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=5.6e-15  Score=157.84  Aligned_cols=133  Identities=20%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             CeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           48 EVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        48 ~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ++..+++..+.+...|..+ .+.+|+.|+|++|.+..++..                          +..+++|++|+|+
T Consensus       202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--------------------------~~~l~~L~~L~Ls  255 (727)
T 4b8c_D          202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN--------------------------IFKYDFLTRLYLN  255 (727)
T ss_dssp             --------------------CCCCCCEEECTTSCCSCCCGG--------------------------GGGCCSCSCCBCT
T ss_pred             cccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh--------------------------hcCCCCCCEEEee
Confidence            3444444445555445555 778888999998888876554                          3356777888888


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      +|... .+|..+.++++|++|+|++|... .+| .++.+++|++|+|++|.|+.+|..|+.+++|+.|+|++|...+.+|
T Consensus       256 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          256 GNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             TSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence            87544 77777778888888888887755 556 5777788888888888888888778888888888888877766666


Q ss_pred             ccc
Q 014575          206 SSL  208 (422)
Q Consensus       206 ~~l  208 (422)
                      ..+
T Consensus       334 ~~~  336 (727)
T 4b8c_D          334 KIL  336 (727)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=8.7e-14  Score=120.93  Aligned_cols=135  Identities=19%  Similarity=0.219  Sum_probs=109.5

Q ss_pred             CCCCceEEEccCCccc--cccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC
Q 014575           67 HPEKLVSIEMPHGNIQ--QLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL  144 (422)
Q Consensus        67 ~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L  144 (422)
                      .+++|++|++++|.+.  .++..                          +..+++|++|++++|... .+ ..+..+++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~--------------------------~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L   73 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL--------------------------TAEFVNLEFLSLINVGLI-SV-SNLPKLPKL   73 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC--------------------------CGGGGGCCEEEEESSCCC-CC-SSCCCCSSC
T ss_pred             CcccCCEEECCCCCCChhhHHHH--------------------------HHhCCCCCEEeCcCCCCC-Ch-hhhccCCCC
Confidence            3578999999999987  44332                          456778999999999744 44 668899999


Q ss_pred             CEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEecCCCCCCCcccc----cccCCCCCcEE
Q 014575          145 KELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALYLDNCKRLKSLPS----SLCKLNSLNFI  217 (422)
Q Consensus       145 ~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L  217 (422)
                      ++|++++|.....+|. +..+++|+.|+|++|.++.+|  ..+..+++|+.|++++|.. ..+|.    .+..+++|+.|
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEE
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEe
Confidence            9999999987776775 556899999999999999887  6889999999999999754 45555    78899999999


Q ss_pred             EccCCCCCCCCCcc
Q 014575          218 YLRWCSSLKSLPDE  231 (422)
Q Consensus       218 ~Ls~c~~l~~lp~~  231 (422)
                      ++++|. ...+|+.
T Consensus       153 ~l~~n~-~~~~~~~  165 (168)
T 2ell_A          153 DGYDRE-DQEAPDS  165 (168)
T ss_dssp             TTEETT-SCBCCSS
T ss_pred             cCCCCC-hhhcccc
Confidence            999974 4556654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=2.6e-14  Score=152.71  Aligned_cols=134  Identities=22%  Similarity=0.255  Sum_probs=92.6

Q ss_pred             hhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCC
Q 014575          113 LTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLS  191 (422)
Q Consensus       113 li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~  191 (422)
                      .+..++.|+.|+|++|.. ..+|..++++++|++|+|++|... .+| .++.+++|++|+|++|.|+.+|..++.+++|+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             ---CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            366777788888887754 467766777788888888887655 555 47777778888888888777777777777888


Q ss_pred             EEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCC-CCEEeccCcccc
Q 014575          192 ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEA-LDSLIAEGTAIR  249 (422)
Q Consensus       192 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~-L~~L~l~~n~l~  249 (422)
                      +|+|++| .++.+|..|+.+++|+.|+|++|...+.+|..+..+.. +..+++++|.++
T Consensus       297 ~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          297 YFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             EEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             EEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence            8888775 45677777777778888888877777776666543221 123556666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=3.3e-13  Score=120.19  Aligned_cols=131  Identities=20%  Similarity=0.215  Sum_probs=94.4

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCC
Q 014575           50 RYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK  129 (422)
Q Consensus        50 r~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~  129 (422)
                      ++++++++.++.+|..+. .+|++|++++|+|..++..                        ..++.+++|++|+|++|.
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~------------------------~~~~~l~~L~~L~Ls~N~   65 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSD------------------------GLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCS------------------------CSGGGCTTCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCc------------------------cccccCCCCCEEECCCCC
Confidence            577888888888887663 3888888888888776432                        015567778888888887


Q ss_pred             CCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCccc
Q 014575          130 SLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       130 ~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      ..+..|..+.++++|++|+|++|...+..|. +..+++|++|+|++|+|+.+ |..+..+++|++|+|++|......+
T Consensus        66 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            6666677777788888888888776555553 77777788888888877755 5567777777777777766554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.46  E-value=7.8e-13  Score=118.00  Aligned_cols=123  Identities=18%  Similarity=0.204  Sum_probs=78.9

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCC
Q 014575           50 RYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCK  129 (422)
Q Consensus        50 r~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~  129 (422)
                      ++++.+++.++.+|..+ +++|++|++++|.|+.++..                          +..+++|++|+|++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~--------------------------~~~l~~L~~L~Ls~N~   65 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKE--------------------------LSNYKHLTLIDLSNNR   65 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGG--------------------------GGGCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHH--------------------------hhcccCCCEEECCCCc
Confidence            46667777777777655 35777777777777655422                          4556667777777776


Q ss_pred             CCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCC
Q 014575          130 SLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCK  199 (422)
Q Consensus       130 ~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~  199 (422)
                      ..+..+..+.++++|++|+|++|......| .+..+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|.
T Consensus        66 i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            555555556667777777777766544444 366666777777777777666653 5566666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1e-13  Score=121.67  Aligned_cols=133  Identities=16%  Similarity=0.182  Sum_probs=112.3

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCC-CCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccc-cCCCCCC
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLE-FLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI-ECLSRLS  191 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~  191 (422)
                      +..+.+|+.|++++|.. ..+|. +..+. +|+.|++++|.... ++.+..+++|++|+|++|.|+.+|+.+ ..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l-~~i~~-~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKI-PVIEN-LGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCC-CSCCC-GGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCC-chhHH-hhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            45678899999999854 46665 55555 99999999987554 588999999999999999999998765 8999999


Q ss_pred             EEecCCCCCCCcccc--cccCCCCCcEEEccCCCCCCCCCcc----cCCCCCCCEEeccCcccccc
Q 014575          192 ALYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSSLKSLPDE----LGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       192 ~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~l~~lp~~----~~~l~~L~~L~l~~n~l~~l  251 (422)
                      +|++++|. ++.+|.  .+..+++|+.|++++|.. ..+|..    +..+++|+.|++++|.+.+.
T Consensus        92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            99999965 578887  789999999999999765 567774    88899999999999987653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.45  E-value=7.7e-13  Score=118.03  Aligned_cols=125  Identities=23%  Similarity=0.270  Sum_probs=103.9

Q ss_pred             cEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCC
Q 014575          121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNC  198 (422)
Q Consensus       121 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~  198 (422)
                      +.++++++ .++.+|..+.  ++|+.|++++|... .+| .+..+++|+.|+|++|.|+.++. .+..+++|++|+|++|
T Consensus        13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888886 5678887663  68999999998754 565 68899999999999999998875 6899999999999997


Q ss_pred             CCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          199 KRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       199 ~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      ...+..|..+..+++|+.|+|++|......+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            766555667999999999999997655444446889999999999999876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.45  E-value=1.1e-13  Score=117.76  Aligned_cols=126  Identities=21%  Similarity=0.246  Sum_probs=102.4

Q ss_pred             CCCCceEEEccCCccc--cccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC
Q 014575           67 HPEKLVSIEMPHGNIQ--QLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL  144 (422)
Q Consensus        67 ~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L  144 (422)
                      .+++|++|++++|.+.  .++..                          +..+++|++|++++|...+ + ..+.++++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~--------------------------~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L   66 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL--------------------------TDEFEELEFLSTINVGLTS-I-ANLPKLNKL   66 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC--------------------------CTTCTTCCEEECTTSCCCC-C-TTCCCCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHH--------------------------HhhcCCCcEEECcCCCCCC-c-hhhhcCCCC
Confidence            3468999999999887  44322                          5577889999999986544 4 568899999


Q ss_pred             CEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccC--ccccCCCCCCEEecCCCCCCCcccc----cccCCCCCcEE
Q 014575          145 KELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELP--SSIECLSRLSALYLDNCKRLKSLPS----SLCKLNSLNFI  217 (422)
Q Consensus       145 ~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L  217 (422)
                      ++|++++|.....+|. +..+++|++|++++|.++.+|  ..++.+++|++|++++|. +..+|.    .+..+++|+.|
T Consensus        67 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEE
T ss_pred             CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccc
Confidence            9999999987776775 556889999999999999875  789999999999999975 445554    68889999999


Q ss_pred             EccC
Q 014575          218 YLRW  221 (422)
Q Consensus       218 ~Ls~  221 (422)
                      ++++
T Consensus       146 ~l~d  149 (149)
T 2je0_A          146 DGYD  149 (149)
T ss_dssp             TTBC
T ss_pred             cCCC
Confidence            9864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.43  E-value=1.8e-12  Score=113.62  Aligned_cols=130  Identities=18%  Similarity=0.195  Sum_probs=76.2

Q ss_pred             eeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCC
Q 014575           49 VRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNC  128 (422)
Q Consensus        49 Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~  128 (422)
                      .+.++.+++.+..+|..+ +++|++|++++|++++++...                         ++.+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~-------------------------~~~l~~L~~L~l~~n   62 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGV-------------------------FDKLTQLTKLSLSQN   62 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTT-------------------------TTTCTTCSEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHH-------------------------hcCcccccEEECCCC
Confidence            345666666677776544 356777777777766554321                         345566677777766


Q ss_pred             CCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcc
Q 014575          129 KSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSL  204 (422)
Q Consensus       129 ~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l  204 (422)
                      ...+..+..+.++++|+.|++++|......+. +..+++|++|+|++|.++.+|.. +..+++|+.|++++|...+..
T Consensus        63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            44433333345666666666666654433332 45666666666666666666554 355666666666665544433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.43  E-value=2.6e-12  Score=112.61  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=102.8

Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCC
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDN  197 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~  197 (422)
                      .+.++++++ .+..+|..+  .++|+.|++++|...+..+ .+..+++|++|+|++|.++.+|.. +..+++|+.|++++
T Consensus         9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467888886 466777654  4799999999988655444 378899999999999999998865 68999999999999


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCCCCCCCCc-ccCCCCCCCEEeccCcccccc
Q 014575          198 CKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD-ELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       198 ~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      |...+..+..+..+++|+.|++++|... .+|. .+..+++|+.|++++|.+...
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence            7655444445788999999999997655 5554 468899999999999998743

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=3.7e-13  Score=118.00  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=66.0

Q ss_pred             CCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCc--cccCCCCCCEEec
Q 014575          119 KLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPS--SIECLSRLSALYL  195 (422)
Q Consensus       119 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~L  195 (422)
                      +|++|++++|... .+ ..+..+++|++|++++|......+. +..+++|++|+|++|.|+.+|.  .+..+++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCC-cc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence            5667777766433 33 3466677777777777654433333 3666777777777777777776  6677777777777


Q ss_pred             CCCCCCCccccc----ccCCCCCcEEEccCCC
Q 014575          196 DNCKRLKSLPSS----LCKLNSLNFIYLRWCS  223 (422)
Q Consensus       196 ~~~~~l~~lp~~----l~~l~~L~~L~Ls~c~  223 (422)
                      ++|. +..+|..    +..+++|+.|++++|.
T Consensus       121 ~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          121 LRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            7754 3456653    6677777777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.35  E-value=6.8e-14  Score=145.50  Aligned_cols=201  Identities=12%  Similarity=0.054  Sum_probs=104.4

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccc--cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575           47 AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQL--WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL  123 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l--~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L  123 (422)
                      .+|+.|.+.++....+|..+ .+++|++|++++|.+...  ...+..+++|+.+... .+ ......+.++..+++|++|
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~-~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NV-IGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GG-GHHHHHHHHHHHCTTCCEE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc-cCHHHHHHHHHhCCCCCEE
Confidence            66777777766666666655 567888888888776431  1223455555554111 11 1111222334556677777


Q ss_pred             eccC----------CCCCcc--ccccCCCCCCCCEEEeeCCCCCCCCc-CCCC-CCCcCEEEee----CccCcccC----
Q 014575          124 NLNN----------CKSLRI--LPAGIFRLEFLKELDLWGCSKLKTLP-EISS-AGNIEVMYLN----GTAIEELP----  181 (422)
Q Consensus       124 ~L~~----------~~~l~~--lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~-l~~L~~L~L~----~n~i~~lp----  181 (422)
                      ++++          |..++.  ++.....+++|++|+++.+......+ .++. +++|+.|+++    .|.++..|    
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            7773          433331  22222246666666665444332222 2332 5566666665    44555433    


Q ss_pred             --ccccCCCCCCEEecCCCCC--CCccccccc-CCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEeccCcccc
Q 014575          182 --SSIECLSRLSALYLDNCKR--LKSLPSSLC-KLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       182 --~~i~~l~~L~~L~L~~~~~--l~~lp~~l~-~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                        ..+..+++|+.|+++.|..  ....+..+. .+++|+.|++++|...+ .++..+..+++|+.|++++|.++
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence              2245566666666655432  222222222 35666666666655433 23444556666677777666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=4.6e-14  Score=146.79  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=76.0

Q ss_pred             CCeeEEEecCCCCCCC-----CCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhh-ccCCCCCCcchhhhcCCC
Q 014575           47 AEVRYLHWYGYPLKSL-----PSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRA-CNFFTKSPNHSLTLHLDK  119 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~l-----P~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~-~~~~~~~~~~~li~~l~~  119 (422)
                      ++|++|++.++.+..+     +..+ .+++|++|+++++.+.+++..+..+++|+.+.... ............+..+++
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            6677777776666422     2222 45677777777777666555555555555552211 111111111122445556


Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCc--ccCccccCCCCCCEEec
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIE--ELPSSIECLSRLSALYL  195 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L  195 (422)
                      |+.|+++++ ....+|..+..+++|++|++++|.......  .+..+++|+.|+++ +.+.  .++..+..+++|++|++
T Consensus       272 L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          272 LCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             CCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             ccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence            666666653 344555555566677777777765221111  14555666666666 3332  23333345556666666


Q ss_pred             C
Q 014575          196 D  196 (422)
Q Consensus       196 ~  196 (422)
                      +
T Consensus       350 ~  350 (592)
T 3ogk_B          350 E  350 (592)
T ss_dssp             E
T ss_pred             e
Confidence            6

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=2.3e-14  Score=128.25  Aligned_cols=129  Identities=21%  Similarity=0.253  Sum_probs=77.5

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCccccCCCCCCE
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSRLSA  192 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~  192 (422)
                      +..+++|++|++++|.. ..+| .+.++++|++|++++|... .+|. +..+++|+.|+|++|.++.+| .+..+++|+.
T Consensus        44 ~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred             HhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence            55666677777776643 3355 4666677777777776533 4453 344456777777777777665 4666667777


Q ss_pred             EecCCCCCCCcccc--cccCCCCCcEEEccCCCCCCCCCcc----------cCCCCCCCEEeccCcccc
Q 014575          193 LYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSSLKSLPDE----------LGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       193 L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~l~~lp~~----------~~~l~~L~~L~l~~n~l~  249 (422)
                      |++++|. +..+|.  .+..+++|+.|++++|...+..|..          +..+++|+.|+  ++.++
T Consensus       120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777643 344332  4666677777777766554444432          45566666664  44443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=4.1e-14  Score=126.65  Aligned_cols=131  Identities=18%  Similarity=0.265  Sum_probs=105.7

Q ss_pred             CCCCcEEeccCCCCCcc------ccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCC
Q 014575          117 LDKLVNLNLNNCKSLRI------LPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRL  190 (422)
Q Consensus       117 l~~L~~L~L~~~~~l~~------lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L  190 (422)
                      ...++.++++.+...+.      +|..+..+++|++|++++|... .+|.+..+++|+.|++++|.++.+|..+..+++|
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L   95 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIKKIENLDAVADTL   95 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-cccccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence            34445555555444444      4447889999999999998754 4788888999999999999999999988888999


Q ss_pred             CEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCc--ccCCCCCCCEEeccCcccccc
Q 014575          191 SALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPD--ELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       191 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      +.|++++|. +..+| .+..+++|+.|++++|.. ..+|.  .+..+++|+.|++++|.+...
T Consensus        96 ~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           96 EELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CEEECcCCc-CCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccc
Confidence            999999974 55677 588999999999999754 44443  688999999999999998654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=1.1e-10  Score=101.81  Aligned_cols=104  Identities=26%  Similarity=0.314  Sum_probs=67.7

Q ss_pred             CCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCcccc-cccCCCCCcEEEcc
Q 014575          144 LKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLR  220 (422)
Q Consensus       144 L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls  220 (422)
                      .+.++++++. ++.+| .+.  ++|+.|+|++|.|+.+ |..+..+++|++|+|++|+. ..+|. .+..+++|+.|+|+
T Consensus        11 ~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCC-cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECC
Confidence            4566666654 33444 343  4677777777777766 44567777777777777543 34443 35677788888888


Q ss_pred             CCCCCCCCCcccCCCCCCCEEeccCcccccc
Q 014575          221 WCSSLKSLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       221 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      +|...+..+..+..+++|+.|++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            7654444444577788888888888877643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.19  E-value=1.7e-10  Score=100.92  Aligned_cols=103  Identities=23%  Similarity=0.363  Sum_probs=68.3

Q ss_pred             CEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCccc-CccccCCCCCCEEecCCCCCCCccccc-ccCCCCCcEEEccC
Q 014575          145 KELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL-PSSIECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRW  221 (422)
Q Consensus       145 ~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~  221 (422)
                      +.++++++. ++.+| .+.  ++|+.|+|++|.|+.+ |..++.+++|++|+|++|+ +..+|.. +..+++|+.|+|++
T Consensus        15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence            556666654 34455 343  4777777777777766 4456777777777777753 4445544 46778888888887


Q ss_pred             CCCCCCCCc-ccCCCCCCCEEeccCccccccc
Q 014575          222 CSSLKSLPD-ELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       222 c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      |... .+|. .+..+++|+.|++++|.+...+
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCCccccc
Confidence            5444 4444 4777888888888888877554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.18  E-value=1.6e-10  Score=100.63  Aligned_cols=103  Identities=24%  Similarity=0.310  Sum_probs=86.1

Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCC
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDN  197 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~  197 (422)
                      .+.|+++++ .+..+|..+  .++|+.|+|++|...+..| .+..+++|++|+|++|+|+.+|+. +..+++|++|+|++
T Consensus        11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            578999997 567788766  3899999999998777666 489999999999999999999876 58999999999999


Q ss_pred             CCCCCcccc-cccCCCCCcEEEccCCCCCC
Q 014575          198 CKRLKSLPS-SLCKLNSLNFIYLRWCSSLK  226 (422)
Q Consensus       198 ~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~  226 (422)
                      |+ +..+|. .+..+++|+.|+|++|+...
T Consensus        88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             Cc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            75 445554 58899999999999976543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.18  E-value=1.5e-10  Score=101.35  Aligned_cols=102  Identities=28%  Similarity=0.352  Sum_probs=86.2

Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCC
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDN  197 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~  197 (422)
                      -+.++++++ .++.+|..+.  ++|+.|+|++|...+..| .+..+++|++|+|++|+|+.+|.. +..+++|+.|+|++
T Consensus        14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368899987 5688888774  899999999998776666 589999999999999999999886 58999999999999


Q ss_pred             CCCCCccccc-ccCCCCCcEEEccCCCCC
Q 014575          198 CKRLKSLPSS-LCKLNSLNFIYLRWCSSL  225 (422)
Q Consensus       198 ~~~l~~lp~~-l~~l~~L~~L~Ls~c~~l  225 (422)
                      |+ +..+|.. +..+++|+.|+|++|+..
T Consensus        91 N~-l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NH-LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             Cc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence            65 5566654 889999999999997543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=4.7e-11  Score=115.20  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccc-cccCCCCCc-EEEccCCCCCCCC-CcccCCCCCCC
Q 014575          164 AGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLN-FIYLRWCSSLKSL-PDELGNLEALD  239 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~-~L~Ls~c~~l~~l-p~~~~~l~~L~  239 (422)
                      +++|+.|+|++|+++.+|. .+..+++|+.|++.++  +..++. .|.++++|+ .+++.+  .+..+ +..+.+|++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            6789999999999999986 5788999999999985  666665 478899999 999987  44444 46788999999


Q ss_pred             EEeccCcccccccc
Q 014575          240 SLIAEGTAIREVYF  253 (422)
Q Consensus       240 ~L~l~~n~l~~lp~  253 (422)
                      .+++++|+++.++.
T Consensus       301 ~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          301 YVLATGDKITTLGD  314 (329)
T ss_dssp             EEEECSSCCCEECT
T ss_pred             EEEeCCCccCccch
Confidence            99999998887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.17  E-value=4.1e-13  Score=139.56  Aligned_cols=14  Identities=29%  Similarity=0.361  Sum_probs=10.4

Q ss_pred             hCCCCCceEEEecC
Q 014575           15 TKMCKLRFLKFYNS   28 (422)
Q Consensus        15 ~~m~~L~~L~l~~~   28 (422)
                      .++++|+.|+++++
T Consensus       208 ~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          208 TRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHCTTCCEEECCTT
T ss_pred             HhCCCCcEEecCCC
Confidence            34588888888875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.17  E-value=5.9e-14  Score=145.97  Aligned_cols=229  Identities=15%  Similarity=0.118  Sum_probs=117.3

Q ss_pred             hCCCCCceEEEecCCCCCCCceeEEccCCCC--CCCeeEEEecCC-CCCC--CCCCC-CCCCceEEEccCCccccc----
Q 014575           15 TKMCKLRFLKFYNSKDDGENKCKVSYLVGPG--FAEVRYLHWYGY-PLKS--LPSNI-HPEKLVSIEMPHGNIQQL----   84 (422)
Q Consensus        15 ~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~--~~~Lr~L~l~~~-~l~~--lP~~~-~~~~L~~L~L~~~~l~~l----   84 (422)
                      ..+++|+.|+++++.+...      .+..+.  .++|++|++.+| .+..  ++... .+++|++|+|++|.+...    
T Consensus       102 ~~~~~L~~L~L~~~~~~~~------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDD------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHH------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred             HhCCCCCeEEeeCcEEcHH------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence            4556666666666542211      111111  166777777776 3332  33333 466777777777775432    


Q ss_pred             -cccccCCcchHHHHHhhcc-CCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCC--------
Q 014575           85 -WDDVEHNGKLKQIISRACN-FFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSK--------  154 (422)
Q Consensus        85 -~~~~~~l~~L~~l~~~~~~-~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~--------  154 (422)
                       ......+++|+.|....+. .........++..+++|++|++++|...+.+|..+.++++|+.|++++|..        
T Consensus       176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  255 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS  255 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred             HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence             1122244455555222221 011112233345677888888888765556666666777777777655421        


Q ss_pred             -----------CCC-----------CcC-CCCCCCcCEEEeeCccCcc--cCccccCCCCCCEEecCCCCCCCccccccc
Q 014575          155 -----------LKT-----------LPE-ISSAGNIEVMYLNGTAIEE--LPSSIECLSRLSALYLDNCKRLKSLPSSLC  209 (422)
Q Consensus       155 -----------l~~-----------~p~-~~~l~~L~~L~L~~n~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~  209 (422)
                                 ++.           +|. +..+++|++|+|++|.++.  ++..+..+++|+.|++++|-....++....
T Consensus       256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~  335 (594)
T 2p1m_B          256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS  335 (594)
T ss_dssp             HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHH
Confidence                       111           111 1134567777777766552  333355667777777776522122333233


Q ss_pred             CCCCCcEEEccCC--------CCCCC--CCcccCCCCCCCEEeccCcccc
Q 014575          210 KLNSLNFIYLRWC--------SSLKS--LPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       210 ~l~~L~~L~Ls~c--------~~l~~--lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      .+++|+.|++++|        +.++.  +......+++|+.|.+.++.++
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~  385 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT  385 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence            4667777777432        22221  1111123667777776666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.07  E-value=3e-09  Score=105.54  Aligned_cols=223  Identities=11%  Similarity=0.137  Sum_probs=157.3

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQL   84 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l   84 (422)
                      .|...+|.+. +|+.+.+..+-        ..++..... .+|+.+.+.+ .++.++.. | .+.+|+.+++++|+++.+
T Consensus       126 ~I~~~aF~~~-~L~~i~l~~~i--------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I  195 (401)
T 4fdw_A          126 SIPKDAFRNS-QIAKVVLNEGL--------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKL  195 (401)
T ss_dssp             EECTTTTTTC-CCSEEECCTTC--------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEE
T ss_pred             EehHhhcccC-CccEEEeCCCc--------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEe
Confidence            3567899985 79999887642        124433333 7788888875 77777754 4 788999999999999888


Q ss_pred             cccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCC
Q 014575           85 WDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EIS  162 (422)
Q Consensus        85 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~  162 (422)
                      ..+.....+|+.+... .++.  ......|.++++|+.+++..+  +..++...+.-.+|+.+.+..+  +..++  .|.
T Consensus       196 ~~~aF~~~~L~~l~lp-~~l~--~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~  268 (401)
T 4fdw_A          196 PASTFVYAGIEEVLLP-VTLK--EIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFY  268 (401)
T ss_dssp             CTTTTTTCCCSEEECC-TTCC--EECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTT
T ss_pred             chhhEeecccCEEEeC-Cchh--eehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhh
Confidence            7766555555544111 0000  112223778899999999874  5566554444488999999653  45554  588


Q ss_pred             CCCCcCEEEeeCccCc-----ccC-ccccCCCCCCEEecCCCCCCCcccc-cccCCCCCcEEEccCCCCCCCC-CcccCC
Q 014575          163 SAGNIEVMYLNGTAIE-----ELP-SSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSL-PDELGN  234 (422)
Q Consensus       163 ~l~~L~~L~L~~n~i~-----~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~l-p~~~~~  234 (422)
                      ++++|+.+.+.++.+.     .++ ..+..+++|+.+.+.+  .+..++. .|.++++|+.++|..+  +..+ +..+.+
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~  344 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN  344 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC
Confidence            8999999999988776     454 4678899999999995  3566654 5778899999999653  4444 456788


Q ss_pred             CCCCCEEeccCccccccc
Q 014575          235 LEALDSLIAEGTAIREVY  252 (422)
Q Consensus       235 l~~L~~L~l~~n~l~~lp  252 (422)
                      + +|+.+.+.+|.+..++
T Consensus       345 ~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          345 T-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             S-CCCEEEECCSSCCBCC
T ss_pred             C-CCCEEEEcCCCCcccc
Confidence            8 9999999999776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=7.6e-10  Score=107.30  Aligned_cols=100  Identities=19%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             EEeccCCCCCccccccCCCCCCCCEEEeeC-CCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCC
Q 014575          122 NLNLNNCKSLRILPAGIFRLEFLKELDLWG-CSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNC  198 (422)
Q Consensus       122 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~-~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~  198 (422)
                      .++.+++..+..+|. +..+++|+.|+|++ |...+..| .|..+++|+.|+|++|+|+.+|+ .|..+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            345555434555666 66666666666664 43322222 35666666666666666665543 4566666666666664


Q ss_pred             CCCCcccccccCCCCCcEEEccCCC
Q 014575          199 KRLKSLPSSLCKLNSLNFIYLRWCS  223 (422)
Q Consensus       199 ~~l~~lp~~l~~l~~L~~L~Ls~c~  223 (422)
                      + +..+|..+.....|+.|+|.+|+
T Consensus        91 ~-l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 A-LESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             C-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             c-cceeCHHHcccCCceEEEeeCCC
Confidence            3 33444433222236666665543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=2.1e-09  Score=103.59  Aligned_cols=219  Identities=10%  Similarity=0.036  Sum_probs=125.2

Q ss_pred             eeChhhhhC--------CCCCceEEEecCCCCCCCceeEEccCC-CCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEE
Q 014575            8 YLHPDTFTK--------MCKLRFLKFYNSKDDGENKCKVSYLVG-PGF-AEVRYLHWYGYPLKSLPSNI--HPEKLVSIE   75 (422)
Q Consensus         8 ~l~~~~f~~--------m~~L~~L~l~~~~~~~~~~~~~~lp~~-l~~-~~Lr~L~l~~~~l~~lP~~~--~~~~L~~L~   75 (422)
                      .|++.+|.+        +++|+.|.|.+ ..       ..++.+ +.. .+|+.|++.++.+..++...  ...++..+.
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i-------~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~  154 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KI-------KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP  154 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TC-------CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cc-------cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence            577888888        88888888876 21       124443 444 78888888888887777764  444555555


Q ss_pred             ccCCcc----ccccc-cccCCcchHHHHHhhccCCCCCCcchh-h---hcCCCCcEEeccCCCCCccccccCC-CCCCCC
Q 014575           76 MPHGNI----QQLWD-DVEHNGKLKQIISRACNFFTKSPNHSL-T---LHLDKLVNLNLNNCKSLRILPAGIF-RLEFLK  145 (422)
Q Consensus        76 L~~~~l----~~l~~-~~~~l~~L~~l~~~~~~~~~~~~~~~l-i---~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~  145 (422)
                      +..+..    ..+.. .+..+.+|+..    .........+.. +   ....++..+.+.+.-...... .+. .+++|+
T Consensus       155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~----i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~l~~~~~~L~  229 (329)
T 3sb4_A          155 LGSSDAYRFKNRWEHFAFIEGEPLETT----IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK-LIRDYMPNLV  229 (329)
T ss_dssp             TTCTHHHHTSTTTTTSCEEESCCCEEE----EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH-HHHHHCTTCC
T ss_pred             Ccchhhhhcccccccccccccccccee----EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHH-HHHHhcCCCe
Confidence            444211    11100 01111111100    000000000000 0   023344555555431111111 111 367888


Q ss_pred             EEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCC-EEecCCCCCCCccc-ccccCCCCCcEEEcc
Q 014575          146 ELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLS-ALYLDNCKRLKSLP-SSLCKLNSLNFIYLR  220 (422)
Q Consensus       146 ~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~-~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls  220 (422)
                      .|++++|+ +..+|  .|.++++|+.|+|.+| ++.++. +|..+++|+ .+++.+  .+..++ ..|.++++|+.++++
T Consensus       230 ~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          230 SLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             EEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred             EEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence            88888865 44555  4788888888888887 777765 577888888 888887  355554 567888889999887


Q ss_pred             CCCCCCCCCcccCCCCCCCEEec
Q 014575          221 WCSSLKSLPDELGNLEALDSLIA  243 (422)
Q Consensus       221 ~c~~l~~lp~~~~~l~~L~~L~l  243 (422)
                      +++....-+..+.++++|+.++.
T Consensus       306 ~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          306 GDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             SSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCccCccchhhhcCCcchhhhcc
Confidence            75444444457788888888763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.93  E-value=3e-08  Score=98.30  Aligned_cols=222  Identities=8%  Similarity=0.088  Sum_probs=155.0

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccC-CCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCccccc
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLV-GPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPHGNIQQL   84 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~-~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~~~l~~l   84 (422)
                      .|...||.+. +|+.+.+.++-        ..+.. .+.. .+|+.+++.++.+..+|... ...+|+.+.++.+ ++.+
T Consensus       148 ~I~~~aF~~~-~L~~i~lp~~l--------~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I  217 (401)
T 4fdw_A          148 SIGDMAFFNS-TVQEIVFPSTL--------EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEI  217 (401)
T ss_dssp             EECTTTTTTC-CCCEEECCTTC--------CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEE
T ss_pred             EECHHhcCCC-CceEEEeCCCc--------cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hhee
Confidence            4667899994 79999887521        12433 3444 88999999999999998765 6689999999854 7766


Q ss_pred             cc-cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccc-cccCCCCCCCCEEEeeCCCCC----CCC
Q 014575           85 WD-DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL-PAGIFRLEFLKELDLWGCSKL----KTL  158 (422)
Q Consensus        85 ~~-~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l----~~~  158 (422)
                      .. .+..+.+|+.+.... ++.  ......|.. .+|+.+.+.++  +..+ +..+.++++|+.+++.++...    ..+
T Consensus       218 ~~~aF~~~~~L~~l~l~~-~l~--~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          218 GSQAFLKTSQLKTIEIPE-NVS--TIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             CTTTTTTCTTCCCEECCT-TCC--EECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             hhhHhhCCCCCCEEecCC-Ccc--Ccccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence            54 345566666552110 110  011122445 68999999653  4445 456778999999999987543    124


Q ss_pred             c--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCCcccCC
Q 014575          159 P--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLPDELGN  234 (422)
Q Consensus       159 p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~  234 (422)
                      +  .|.++++|+.+.|. ++++.++. .+..+++|+.+.+..+  +..++ ..|.++ +|+.++++++......+..+..
T Consensus       292 ~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             CTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             CHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence            4  58899999999998 56888865 6788999999999763  55554 457788 9999999997655545556666


Q ss_pred             CC-CCCEEeccCcccc
Q 014575          235 LE-ALDSLIAEGTAIR  249 (422)
Q Consensus       235 l~-~L~~L~l~~n~l~  249 (422)
                      ++ +++.|++..+.+.
T Consensus       368 ~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          368 FPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCTTCCEEEECGGGHH
T ss_pred             CCCCccEEEeCHHHHH
Confidence            64 6788887776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=5.1e-09  Score=101.41  Aligned_cols=85  Identities=16%  Similarity=0.085  Sum_probs=38.4

Q ss_pred             hhcCCCCcEEeccC-CCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCC
Q 014575          114 TLHLDKLVNLNLNN-CKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLS  191 (422)
Q Consensus       114 i~~l~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~  191 (422)
                      +..+++|+.|+|++ |...+..|..+.++++|+.|+|++|...+..| .|..+++|+.|+|++|.|+.+|..+.....|+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence            44444555555553 33222222344455555555555544333333 24445555555555555555544332222255


Q ss_pred             EEecCCC
Q 014575          192 ALYLDNC  198 (422)
Q Consensus       192 ~L~L~~~  198 (422)
                      .|+|.+|
T Consensus       107 ~l~l~~N  113 (347)
T 2ifg_A          107 ELVLSGN  113 (347)
T ss_dssp             EEECCSS
T ss_pred             EEEeeCC
Confidence            5555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.87  E-value=9.9e-11  Score=115.12  Aligned_cols=163  Identities=12%  Similarity=0.038  Sum_probs=111.1

Q ss_pred             CCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhh-cCCCCcEEeccCCCCCccccccCC-CCCCCC
Q 014575           68 PEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTL-HLDKLVNLNLNNCKSLRILPAGIF-RLEFLK  145 (422)
Q Consensus        68 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~-~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~  145 (422)
                      +++|++|+|++|.|.....        ..+...             +. ..++|+.|+|++|.....-...+. .+++|+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~--------~~l~~~-------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~  129 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKC--------TVVAAV-------------LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR  129 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHH--------HHHHHH-------------HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEE
T ss_pred             HhhCCEEEecCCCCCHHHH--------HHHHHH-------------HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            4578999999998865311        111100             11 236799999999865433222232 467899


Q ss_pred             EEEeeCCCCCCCCc-CC-----CCCCCcCEEEeeCccCcc-----cCccccCCCCCCEEecCCCCCCC----cccccccC
Q 014575          146 ELDLWGCSKLKTLP-EI-----SSAGNIEVMYLNGTAIEE-----LPSSIECLSRLSALYLDNCKRLK----SLPSSLCK  210 (422)
Q Consensus       146 ~L~Ls~~~~l~~~p-~~-----~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~  210 (422)
                      .|+|++|....... .+     ...++|++|+|++|.|+.     ++..+...++|++|+|++|....    .++..+..
T Consensus       130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~  209 (372)
T 3un9_A          130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR  209 (372)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred             HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence            99999986432221 12     345789999999999874     56667888999999999976432    34556777


Q ss_pred             CCCCcEEEccCCCCCC----CCCcccCCCCCCCEEeccCcccccc
Q 014575          211 LNSLNFIYLRWCSSLK----SLPDELGNLEALDSLIAEGTAIREV  251 (422)
Q Consensus       211 l~~L~~L~Ls~c~~l~----~lp~~~~~l~~L~~L~l~~n~l~~l  251 (422)
                      .++|+.|+|++|....    .++..+...++|++|+|++|.|...
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            8899999999986543    3444455668899999999988743

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.73  E-value=8.1e-10  Score=108.56  Aligned_cols=179  Identities=13%  Similarity=0.118  Sum_probs=114.5

Q ss_pred             CCeeEEEecCCCCCCCCC-----CC--CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCC
Q 014575           47 AEVRYLHWYGYPLKSLPS-----NI--HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDK  119 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~-----~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~  119 (422)
                      ..|++|++++|.+.....     .+  ..++|++|+|++|.|...  +.      +.+                ...+++
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~--~~------~~l----------------~~~L~~  127 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA--GL------RTL----------------LPVFLR  127 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH--HH------HHT----------------HHHHHT
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH--HH------HHH----------------HHHHHh
Confidence            678999999998765322     11  236899999999988642  11      111                223446


Q ss_pred             CcEEeccCCCCCccccccC-----CCCCCCCEEEeeCCCCCCC----Cc-CCCCCCCcCEEEeeCccCcc-----cCccc
Q 014575          120 LVNLNLNNCKSLRILPAGI-----FRLEFLKELDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIEE-----LPSSI  184 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i-----~~l~~L~~L~Ls~~~~l~~----~p-~~~~l~~L~~L~L~~n~i~~-----lp~~i  184 (422)
                      |+.|+|++|.....-...+     ...++|++|+|++|.....    ++ .+...++|++|+|++|.|+.     ++..+
T Consensus       128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L  207 (372)
T 3un9_A          128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL  207 (372)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred             ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence            8999999986543322222     2467899999999874321    22 24667889999999999873     45677


Q ss_pred             cCCCCCCEEecCCCCCCC----cccccccCCCCCcEEEccCCCCCCCCCcccC---CCC--CCCEEe--ccCcccc
Q 014575          185 ECLSRLSALYLDNCKRLK----SLPSSLCKLNSLNFIYLRWCSSLKSLPDELG---NLE--ALDSLI--AEGTAIR  249 (422)
Q Consensus       185 ~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~---~l~--~L~~L~--l~~n~l~  249 (422)
                      ...++|+.|+|++|....    .++..+...++|+.|+|++|.....-...+.   ...  .|+.+.  +.++.+.
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            788899999999976543    3445566678999999999865433222221   112  166666  6666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.48  E-value=7.6e-08  Score=94.00  Aligned_cols=135  Identities=14%  Similarity=0.114  Sum_probs=91.7

Q ss_pred             hhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CC--CCCCCcCEEEeeC--cc------Cccc
Q 014575          112 SLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EI--SSAGNIEVMYLNG--TA------IEEL  180 (422)
Q Consensus       112 ~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~--~~l~~L~~L~L~~--n~------i~~l  180 (422)
                      .++..+++|+.|+|++|... .++. + .+++|+.|++..|......- .+  ..+++|+.|+|+.  +.      +..+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            44778899999999987433 3444 4 48899999999876332111 23  3688999999863  21      2233


Q ss_pred             Cccc--cCCCCCCEEecCCCCCCCcccccc---cCCCCCcEEEccCCCCCC----CCCcccCCCCCCCEEeccCcccc
Q 014575          181 PSSI--ECLSRLSALYLDNCKRLKSLPSSL---CKLNSLNFIYLRWCSSLK----SLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       181 p~~i--~~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~Ls~c~~l~----~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      ...+  ..+++|+.|+|.+|......+..+   ..+++|+.|+|+.|....    .++..+..+++|+.|++++|.+.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            2333  357899999999876554333323   247899999999865433    24444456789999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.42  E-value=7.7e-08  Score=93.95  Aligned_cols=60  Identities=13%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             CCCcCEEEeeCccCcc-cCccc---cCCCCCCEEecCCCCCCC----cccccccCCCCCcEEEccCCC
Q 014575          164 AGNIEVMYLNGTAIEE-LPSSI---ECLSRLSALYLDNCKRLK----SLPSSLCKLNSLNFIYLRWCS  223 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~-lp~~i---~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~  223 (422)
                      +++|+.|+|.+|.+.. .+..+   ..+++|++|+|+.|....    .++..+..+++|+.|+|++|.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            4455555555555441 11111   234555555555533221    123333345556666665553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.04  E-value=6.2e-05  Score=73.91  Aligned_cols=103  Identities=14%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             CCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCccc-ccccCCCC
Q 014575          138 IFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLP-SSLCKLNS  213 (422)
Q Consensus       138 i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~  213 (422)
                      +.+...|+.+.+....  ..+.  .+.++++|+.+.+. +.++.++. .+..+.+|+.+.+..+  +..+. ..|.++++
T Consensus       261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred             eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence            4456777777776532  2233  46777888888885 55677765 4677888888888762  45554 34777888


Q ss_pred             CcEEEccCCCCCCCCC-cccCCCCCCCEEeccCcc
Q 014575          214 LNFIYLRWCSSLKSLP-DELGNLEALDSLIAEGTA  247 (422)
Q Consensus       214 L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~n~  247 (422)
                      |+.+.+..  .+..+. ..+.+|++|+.+++.++.
T Consensus       336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence            88888864  244554 467888888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.98  E-value=2e-06  Score=75.64  Aligned_cols=82  Identities=13%  Similarity=0.186  Sum_probs=41.2

Q ss_pred             hhcCCCCcEEeccCC-CCCc----cccccCCCCCCCCEEEeeCCCCCCCC----c-CCCCCCCcCEEEeeCccCcc----
Q 014575          114 TLHLDKLVNLNLNNC-KSLR----ILPAGIFRLEFLKELDLWGCSKLKTL----P-EISSAGNIEVMYLNGTAIEE----  179 (422)
Q Consensus       114 i~~l~~L~~L~L~~~-~~l~----~lp~~i~~l~~L~~L~Ls~~~~l~~~----p-~~~~l~~L~~L~L~~n~i~~----  179 (422)
                      +...+.|++|+|++| ....    .+...+...++|++|+|++|.....-    . .+...++|++|+|++|.|+.    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            455667777777776 3321    23334445566666666665432110    0 12233455555555555552    


Q ss_pred             -cCccccCCCCCCEEec
Q 014575          180 -LPSSIECLSRLSALYL  195 (422)
Q Consensus       180 -lp~~i~~l~~L~~L~L  195 (422)
                       +...+...+.|++|+|
T Consensus       112 ~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          112 ALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHhCCCceEEEe
Confidence             3344444445555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.96  E-value=1.1e-06  Score=77.18  Aligned_cols=115  Identities=13%  Similarity=0.001  Sum_probs=85.3

Q ss_pred             cccCCCCCCCCEEEeeCC-CCCCC----Cc-CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCC-
Q 014575          135 PAGIFRLEFLKELDLWGC-SKLKT----LP-EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLK-  202 (422)
Q Consensus       135 p~~i~~l~~L~~L~Ls~~-~~l~~----~p-~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~-  202 (422)
                      ...+...++|+.|+|++| .....    +. .+...++|++|+|++|.|.     .+...+...+.|++|+|++|.... 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344667899999999998 53321    11 3566789999999999997     355667777899999999975432 


Q ss_pred             ---cccccccCCCCCcEEEc--cCCCCCCC----CCcccCCCCCCCEEeccCcccc
Q 014575          203 ---SLPSSLCKLNSLNFIYL--RWCSSLKS----LPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       203 ---~lp~~l~~l~~L~~L~L--s~c~~l~~----lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                         .+...+...++|+.|+|  ++|.....    +.+.+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               25566778889999999  76654332    3445556689999999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.93  E-value=5.3e-05  Score=74.44  Aligned_cols=122  Identities=15%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCC
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRL  190 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L  190 (422)
                      +..+..|+.+.+..+ ....-...+.+...++.+......    ++  .+..+.+|+.+.+..+ ++.++. ++..+.+|
T Consensus       249 f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          249 FYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL  322 (394)
T ss_dssp             TTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             ccccccceeEEcCCC-cceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCC
Confidence            445555555555543 122222334445555555544321    22  3555667777776543 555543 45667777


Q ss_pred             CEEecCCCCCCCccc-ccccCCCCCcEEEccCCCCCCCCC-cccCCCCCCCEEeccC
Q 014575          191 SALYLDNCKRLKSLP-SSLCKLNSLNFIYLRWCSSLKSLP-DELGNLEALDSLIAEG  245 (422)
Q Consensus       191 ~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~l~~  245 (422)
                      +.+++..  .+..++ ..|.++++|+.+++..+  +..++ ..+.+|.+|+.+++..
T Consensus       323 ~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          323 VSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            7777764  244443 34666777777777542  33333 3566777777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=9e-06  Score=70.60  Aligned_cols=86  Identities=13%  Similarity=0.197  Sum_probs=46.5

Q ss_pred             CCCCEEEeeCCCCCC-CCcCCCCCCCcCEEEeeCc-cCccc-CccccCC----CCCCEEecCCCCCCCcc-cccccCCCC
Q 014575          142 EFLKELDLWGCSKLK-TLPEISSAGNIEVMYLNGT-AIEEL-PSSIECL----SRLSALYLDNCKRLKSL-PSSLCKLNS  213 (422)
Q Consensus       142 ~~L~~L~Ls~~~~l~-~~p~~~~l~~L~~L~L~~n-~i~~l-p~~i~~l----~~L~~L~L~~~~~l~~l-p~~l~~l~~  213 (422)
                      ..|+.||+++|.... .+..+..+++|+.|+|++| .|+.- -..+..+    ++|++|+|++|..++.- -..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            346666666665221 1123556666666666666 34421 1122332    35777777777654421 122556777


Q ss_pred             CcEEEccCCCCCCC
Q 014575          214 LNFIYLRWCSSLKS  227 (422)
Q Consensus       214 L~~L~Ls~c~~l~~  227 (422)
                      |+.|+|++|..++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            77777777766553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.80  E-value=1.3e-05  Score=74.58  Aligned_cols=77  Identities=21%  Similarity=0.163  Sum_probs=37.8

Q ss_pred             CCCcCEEEeeCccCccc---CccccCCCCCCEEecCCCCCCCcccccccCCC--CCcEEEccCCCCCCCCCc-------c
Q 014575          164 AGNIEVMYLNGTAIEEL---PSSIECLSRLSALYLDNCKRLKSLPSSLCKLN--SLNFIYLRWCSSLKSLPD-------E  231 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~Ls~c~~l~~lp~-------~  231 (422)
                      +++|+.|+|++|.|+.+   |..++.+++|+.|+|++|+. ..+ ..+..+.  +|+.|+|++|+..+.+|+       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            44555555555555533   23445556666666665432 222 1123333  566666666555554442       2


Q ss_pred             cCCCCCCCEEe
Q 014575          232 LGNLEALDSLI  242 (422)
Q Consensus       232 ~~~l~~L~~L~  242 (422)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            34455555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.79  E-value=9.9e-06  Score=75.37  Aligned_cols=80  Identities=15%  Similarity=0.225  Sum_probs=60.5

Q ss_pred             CCCCCCCEEEeeCCCCCC--CCcC-CCCCCCcCEEEeeCccCcccCccccCCC--CCCEEecCCCCCCCcccc-------
Q 014575          139 FRLEFLKELDLWGCSKLK--TLPE-ISSAGNIEVMYLNGTAIEELPSSIECLS--RLSALYLDNCKRLKSLPS-------  206 (422)
Q Consensus       139 ~~l~~L~~L~Ls~~~~l~--~~p~-~~~l~~L~~L~L~~n~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~-------  206 (422)
                      .++++|+.|+|++|....  .+|. +..+++|+.|+|++|.|+.+. .+..+.  +|++|+|++|...+.+|.       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            357899999999987544  2232 457889999999999999773 344444  899999999887776663       


Q ss_pred             cccCCCCCcEEEc
Q 014575          207 SLCKLNSLNFIYL  219 (422)
Q Consensus       207 ~l~~l~~L~~L~L  219 (422)
                      .+..+++|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3677899998873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=2.1e-05  Score=68.20  Aligned_cols=34  Identities=12%  Similarity=0.276  Sum_probs=14.3

Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCC
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCS  153 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~  153 (422)
                      |+.||+++|.....--..+.++++|+.|+|++|.
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            4445555444222211223344445555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.73  E-value=0.0013  Score=63.97  Aligned_cols=62  Identities=11%  Similarity=0.100  Sum_probs=33.4

Q ss_pred             eeChhhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccC
Q 014575            8 YLHPDTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNI-HPEKLVSIEMPH   78 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~-~~~~L~~L~L~~   78 (422)
                      .|...||.++.+|+.+.|..+-        ..+...... .+|..+.+.. .++.++... ...+|+.+.++.
T Consensus        59 ~Ig~~aF~~C~~L~~I~lp~~v--------~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~  122 (379)
T 4h09_A           59 SIGEANFNSCYNMTKVTVASTV--------TSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG  122 (379)
T ss_dssp             EECTTTTTTCTTCCEEEECTTC--------CEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred             ChHHHHhhCCCCCCEEEeCCcc--------eEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCC
Confidence            4667799999999999986532        112222222 4455554432 244444332 333566666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.73  E-value=0.00083  Score=65.78  Aligned_cols=20  Identities=15%  Similarity=0.089  Sum_probs=13.5

Q ss_pred             eeChhhhhCCCCCceEEEec
Q 014575            8 YLHPDTFTKMCKLRFLKFYN   27 (422)
Q Consensus         8 ~l~~~~f~~m~~L~~L~l~~   27 (422)
                      .|...||.++++|+.+.|..
T Consensus        61 sIg~~AF~~c~~L~~i~lp~   80 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS   80 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT
T ss_pred             EhHHHHhhCCCCceEEEeCC
Confidence            46667777777777777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.50  E-value=0.0014  Score=64.25  Aligned_cols=88  Identities=13%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             CCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc-cccCCCCCcEEEccCCCCCCCCC-cccCCCCCC
Q 014575          161 ISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLP-DELGNLEAL  238 (422)
Q Consensus       161 ~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L  238 (422)
                      +..+++|+.+.+..+-.+--...+..+.+|+.+.+..  .+..++. .|.++++|+.++|..  .+..+. ..+.+|.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence            5567788888886554332234577889999999975  4566665 477899999999975  244443 468889999


Q ss_pred             CEEeccCcccccccc
Q 014575          239 DSLIAEGTAIREVYF  253 (422)
Q Consensus       239 ~~L~l~~n~l~~lp~  253 (422)
                      +.+.+..+ ++.++.
T Consensus       337 ~~i~ip~s-v~~I~~  350 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPE  350 (394)
T ss_dssp             CEEEECTT-CCBCCG
T ss_pred             CEEEECcc-cCEEhH
Confidence            99998644 666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.98  E-value=0.017  Score=55.78  Aligned_cols=55  Identities=27%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             CCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecC
Q 014575          140 RLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLD  196 (422)
Q Consensus       140 ~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~  196 (422)
                      +..+|+.+.+...  +..++  .+..+++|+.+.+.++.++.++. .+.++.+|+.+.|.
T Consensus       261 ~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          261 NCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             eeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            4444555554332  22222  24444455555555444544432 34444455555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.40  E-value=0.01  Score=52.26  Aligned_cols=85  Identities=16%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             hhcCCCCcEEeccCCCCCcc-----ccccCCCCCCCCEEEeeCCCCCCC----Cc-CCCCCCCcCEEEeeCccCc-----
Q 014575          114 TLHLDKLVNLNLNNCKSLRI-----LPAGIFRLEFLKELDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIE-----  178 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~~~l~~----~p-~~~~l~~L~~L~L~~n~i~-----  178 (422)
                      +..-+.|+.|+|++++.++.     +-..+..-+.|+.|+|++|.....    +. .+..-+.|+.|+|+.|.|+     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            44556788888887533332     334455556777777777753311    11 1223356777777777776     


Q ss_pred             ccCccccCCCCCCEEecCCC
Q 014575          179 ELPSSIECLSRLSALYLDNC  198 (422)
Q Consensus       179 ~lp~~i~~l~~L~~L~L~~~  198 (422)
                      .+-..+..-+.|+.|+|++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence            23344444555777777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.27  E-value=0.033  Score=45.38  Aligned_cols=52  Identities=19%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             EEEeeCCCCC-CCCc-CCCCCCCcCEEEeeCccCcccCcc-ccCCCCCCEEecCCCC
Q 014575          146 ELDLWGCSKL-KTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSRLSALYLDNCK  199 (422)
Q Consensus       146 ~L~Ls~~~~l-~~~p-~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~  199 (422)
                      .++.++.... ..+| .+..  +|+.|+|++|+|+.+|.. +..+++|+.|+|.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~--~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCT--TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCCc--CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4555554322 1555 3443  677777777777777654 4667777777777753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.95  E-value=0.044  Score=44.62  Aligned_cols=50  Identities=22%  Similarity=0.268  Sum_probs=22.3

Q ss_pred             EEEeeCccCc--ccCccccCCCCCCEEecCCCCCCCccccc-ccCCCCCcEEEccC
Q 014575          169 VMYLNGTAIE--ELPSSIECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRW  221 (422)
Q Consensus       169 ~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~  221 (422)
                      .++.++++++  .+|..+  -.+|+.|+|++| .+..+|.. +..+++|+.|+|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCS
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecC
Confidence            4555556655  555432  124555555553 23333332 33344444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.77  E-value=0.0089  Score=52.58  Aligned_cols=111  Identities=18%  Similarity=0.042  Sum_probs=75.1

Q ss_pred             CCCCCCCCEEEeeCCCCCCCC-----c-CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCC----
Q 014575          138 IFRLEFLKELDLWGCSKLKTL-----P-EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLK----  202 (422)
Q Consensus       138 i~~l~~L~~L~Ls~~~~l~~~-----p-~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~----  202 (422)
                      +.+-++|+.|+|+++..++.-     - .+..-+.|+.|+|++|.|.     .+-..+..-+.|+.|+|+.|....    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445678999999986334321     1 2556678999999999998     355566677899999999965432    


Q ss_pred             cccccccCCCCCcEEEccCCC--CCCC-----CCcccCCCCCCCEEeccCccc
Q 014575          203 SLPSSLCKLNSLNFIYLRWCS--SLKS-----LPDELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       203 ~lp~~l~~l~~L~~L~Ls~c~--~l~~-----lp~~~~~l~~L~~L~l~~n~l  248 (422)
                      .+-+.+..-+.|+.|+|++|.  .++.     +-+.+..=++|+.|+++.+.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            233445556789999998753  2331     223334446889999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	422
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 11/171 (6%)

Query: 50  RYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSP 109
             L   G  LK + +      L  +++ +  I  L   +    KL ++   A      SP
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP 280

Query: 110 NHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV 169
              LT   +  +N N           + I  L+ L  L L+    +  +  +SS   ++ 
Sbjct: 281 LAGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQR 333

Query: 170 MYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLR 220
           ++     + ++ S +  L+ ++ L   +  ++  L   L  L  +  + L 
Sbjct: 334 LFFANNKVSDVSS-LANLTNINWLSAGHN-QISDLT-PLANLTRITQLGLN 381

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 3/154 (1%)

Query: 120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE 178
              L+L N K   I       L+ L  L L      K  P   +    +E +YL+   ++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 179 ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEAL 238
           ELP  +    +   ++ +   +++    +      +  +      S          ++ L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 239 DSLIAEGTAIREVY--FFQSSGRLLLPGNEIPMW 270
             +    T I  +      S   L L GN+I   
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 150 WGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLC 209
              S  +         ++E + ++   + ELP+      RL  L       L  +P    
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQ 324

Query: 210 KLNSLNFIYLRWCSSLKSLPDELGNLEAL 238
            L  L+   + +   L+  PD   ++E L
Sbjct: 325 NLKQLH---VEYNP-LREFPDIPESVEDL 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	422
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.8
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.5
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.28

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=6.3e-21  Score=181.14  Aligned_cols=229  Identities=15%  Similarity=0.106  Sum_probs=159.9

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecC-CCCC-CCCCCC-CCCCceEEEccCCcccccccc-ccCCc
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYG-YPLK-SLPSNI-HPEKLVSIEMPHGNIQQLWDD-VEHNG   92 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~-~~l~-~lP~~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~   92 (422)
                      .+++.|+|+++.+.+.    ..+|..+.. ++|++|++++ |.+. .+|..+ ++++|++|+|++|++.++... +..+.
T Consensus        50 ~~v~~L~L~~~~l~g~----~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCC----CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh
Confidence            3678888888765543    457777777 8888888876 4554 788777 788888888888888775443 44455


Q ss_pred             chHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCC-CEEEeeCCCCCCCCcC-CCCCCCcCEE
Q 014575           93 KLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFL-KELDLWGCSKLKTLPE-ISSAGNIEVM  170 (422)
Q Consensus        93 ~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L-~~L~Ls~~~~l~~~p~-~~~l~~L~~L  170 (422)
                      +|+.+....+..  ....+..++.+++|+.+++++|...+.+|..+..+..+ +.+++++|...+..|. +..+ .+..+
T Consensus       126 ~L~~l~l~~N~~--~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l  202 (313)
T d1ogqa_         126 TLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV  202 (313)
T ss_dssp             TCCEEECCSSEE--ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEE
T ss_pred             hhcccccccccc--cccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            555442211111  11223337778888888888887777888777777665 6777777766655553 4443 33467


Q ss_pred             EeeCccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          171 YLNGTAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       171 ~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      +++.+.+. .+|..++.+++|+.|++++|...+.+| .++.+++|+.|+|++|+..+.+|+.++++++|++|+|++|+++
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            77776665 566677788888888888876665555 4778888888888888887788888888888888888888887


Q ss_pred             -ccccc
Q 014575          250 -EVYFF  254 (422)
Q Consensus       250 -~lp~f  254 (422)
                       .+|.+
T Consensus       282 g~iP~~  287 (313)
T d1ogqa_         282 GEIPQG  287 (313)
T ss_dssp             EECCCS
T ss_pred             ccCCCc
Confidence             55653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.9e-19  Score=164.25  Aligned_cols=199  Identities=18%  Similarity=0.172  Sum_probs=157.7

Q ss_pred             hhCCCCCceEEEecCCCCCCCceeEEccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCC
Q 014575           14 FTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHN   91 (422)
Q Consensus        14 f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l   91 (422)
                      +.++..+...+-+++++.       .+|.++. ++|++|++++|.++.+|.. | .+++|++|+|++|+|+.++.     
T Consensus         6 ~~~~~~~~~v~C~~~~L~-------~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-----   72 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLT-------ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----   72 (266)
T ss_dssp             EECSTTCCEEECTTSCCS-------SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----
T ss_pred             EcccCCCeEEEccCCCCC-------eeCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-----
Confidence            345566666665554432       2565443 6788888888888888754 4 78888888888888876532     


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEE
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVM  170 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L  170 (422)
                                            ++.+++|++|+|++|+ +...+..+.++++|+.|++++|......+ .+..+.+++.|
T Consensus        73 ----------------------~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L  129 (266)
T d1p9ag_          73 ----------------------DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (266)
T ss_dssp             ----------------------CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             ----------------------cccccccccccccccc-ccccccccccccccccccccccccceeeccccccccccccc
Confidence                                  3467889999999985 55567778899999999999988665555 47788999999


Q ss_pred             EeeCccCcccCcc-ccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          171 YLNGTAIEELPSS-IECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       171 ~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      ++++|.++.+|.. +..+++|+.|++++|+..+..+..+..+++|++|+|++|. +..+|+.+..+++|+.|+|++|.+.
T Consensus       130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCCC
Confidence            9999999998765 5678999999999976665555668899999999999975 6699999999999999999999865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.5e-19  Score=162.63  Aligned_cols=206  Identities=18%  Similarity=0.185  Sum_probs=163.3

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      ..+...+-+++.++++|..+ +++|++|+|++|+|+.++.+.                         +..+++|++|+|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~-------------------------f~~l~~L~~L~L~   63 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLAT-------------------------LMPYTRLTQLNLD   63 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGG-------------------------GTTCTTCCEEECT
T ss_pred             CCCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHH-------------------------hhccccccccccc
Confidence            45566788888999999877 468999999999999886542                         6788999999999


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      +|. +..+|. +..+++|++|+|++|......+.+..+++|+.|++++|.+..++. .+..+.+++.|++++|.....-+
T Consensus        64 ~N~-l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          64 RAE-LTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             TSC-CCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccc-cccccc-ccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecc
Confidence            985 567775 678999999999999766555578899999999999999998764 56889999999999975544444


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccccccccccccCCCCcCCCccccccCcceeEEEec
Q 014575          206 SSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFFQSSGRLLLPGNEIPMWFSFQSLGSSSITLKM  285 (422)
Q Consensus       206 ~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~f~~~~~~~lpg~~iP~wf~~~~~g~s~i~~~l  285 (422)
                      ..+..+++|+.|++++|+..+..++.++.+++|++|+|++|+|+.+|.               ++|.   ..+- -.+.|
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~---------------~~~~---~~~L-~~L~L  202 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK---------------GFFG---SHLL-PFAFL  202 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------TTTT---TCCC-SEEEC
T ss_pred             ccccccccchhcccccccccccCccccccccccceeecccCCCcccCh---------------hHCC---CCCC-CEEEe
Confidence            556789999999999987776666778999999999999999987653               1121   1112 34667


Q ss_pred             CCCCCCCCCccceE
Q 014575          286 PHAGWFSNNKVIGF  299 (422)
Q Consensus       286 p~~~w~~~~~~~g~  299 (422)
                      ..|+|.|++++..|
T Consensus       203 ~~Np~~CdC~~~~l  216 (266)
T d1p9ag_         203 HGNPWLCNCEILYF  216 (266)
T ss_dssp             CSCCBCCSGGGHHH
T ss_pred             cCCCCCCCcchHHH
Confidence            77789888765444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=8.4e-19  Score=165.56  Aligned_cols=218  Identities=14%  Similarity=0.179  Sum_probs=132.7

Q ss_pred             CCCceEEEecCCCCCCCceeEEccC-CCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccccccccCCcc
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLV-GPGF-AEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWDDVEHNGK   93 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~-~l~~-~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~   93 (422)
                      ++|++|+|++|.+.       .+|. .+.. ++|++|++.++++..++. .| ++++|+.|++++|+|+.++....  ..
T Consensus        31 ~~l~~L~Ls~N~i~-------~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~--~~  101 (305)
T d1xkua_          31 PDTALLDLQNNKIT-------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT  101 (305)
T ss_dssp             TTCCEEECCSSCCC-------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred             CCCCEEECcCCcCC-------CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchh--hh
Confidence            46777777776532       2443 3444 677777777777776644 34 56777777777777766544321  11


Q ss_pred             hHHH------------------------HHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEe
Q 014575           94 LKQI------------------------ISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDL  149 (422)
Q Consensus        94 L~~l------------------------~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L  149 (422)
                      +..+                        ................+..+++|+.+++++|. +..+|..+  +++|+.|++
T Consensus       102 l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~--~~~L~~L~l  178 (305)
T d1xkua_         102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHL  178 (305)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC--CTTCSEEEC
T ss_pred             hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCccc--CCccCEEEC
Confidence            1111                        00000000011112225667777788887764 34455433  567788888


Q ss_pred             eCCCCCCCCc-CCCCCCCcCEEEeeCccCcccC-ccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCC
Q 014575          150 WGCSKLKTLP-EISSAGNIEVMYLNGTAIEELP-SSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKS  227 (422)
Q Consensus       150 s~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~  227 (422)
                      ++|......+ .+..++.++.|++++|.++.++ ..+..+++|++|+|++| .+..+|..+..+++|+.|+|++|+ ++.
T Consensus       179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~  256 (305)
T d1xkua_         179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISA  256 (305)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCC
T ss_pred             CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCc-cCc
Confidence            7777665555 4677777888888888777664 45677778888888875 456777777778888888887754 445


Q ss_pred             CCc-------ccCCCCCCCEEeccCcccc
Q 014575          228 LPD-------ELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       228 lp~-------~~~~l~~L~~L~l~~n~l~  249 (422)
                      ++.       ....+.+|+.|++++|.++
T Consensus       257 i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cChhhccCcchhcccCCCCEEECCCCcCc
Confidence            543       2334567777888887765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=163.20  Aligned_cols=207  Identities=18%  Similarity=0.197  Sum_probs=161.0

Q ss_pred             ccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccc-cCCcchHHHHHh-hccCCCCCCcchhhh
Q 014575           40 YLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDV-EHNGKLKQIISR-ACNFFTKSPNHSLTL  115 (422)
Q Consensus        40 lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~l~~~-~~~~~~~~~~~~li~  115 (422)
                      +|..+. +.+++|++++|+++.+|.. | .+++|++|+++++++..+.... ..+..++.+... ...+..  ..+..+.
T Consensus        26 iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~--l~~~~~~  102 (284)
T d1ozna_          26 VPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFH  102 (284)
T ss_dssp             CCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC--CCTTTTT
T ss_pred             cCCCCC-CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc--ccchhhc
Confidence            454433 6789999999999999975 4 7899999999999998765433 223333332111 111111  1233378


Q ss_pred             cCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEE
Q 014575          116 HLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSAL  193 (422)
Q Consensus       116 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L  193 (422)
                      .+++|++|++++|......+..+...++|+.+++++|......+ .+..+++|+.|++++|.++.+|+ .+..+++|+.|
T Consensus       103 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchh
Confidence            89999999999997666666667788999999999987654444 47888999999999999998864 66889999999


Q ss_pred             ecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          194 YLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       194 ~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      ++++|+..+..|..+..+++|++|++++|...+..|..++.+++|+.|++++|.+.
T Consensus       183 ~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            99998887777899999999999999998887777788899999999999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=7e-19  Score=166.81  Aligned_cols=202  Identities=16%  Similarity=0.135  Sum_probs=161.1

Q ss_pred             CCeeEEEecCCCCC---CCCCCC-CCCCceEEEccC-Cccc-cccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCC
Q 014575           47 AEVRYLHWYGYPLK---SLPSNI-HPEKLVSIEMPH-GNIQ-QLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKL  120 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~---~lP~~~-~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L  120 (422)
                      .+++.|++.++.+.   .+|..+ ++++|++|+|++ |.+. .++..+..+++|++|....+.+...  .+..+..+.+|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~--~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA--IPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE--CCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc--ccccccchhhh
Confidence            47999999999876   588888 899999999986 7787 5778888888888885444444332  22337788889


Q ss_pred             cEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCc-CEEEeeCccCc-ccCccccCCCCCCEEecCC
Q 014575          121 VNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNI-EVMYLNGTAIE-ELPSSIECLSRLSALYLDN  197 (422)
Q Consensus       121 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L-~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~  197 (422)
                      +.+++++|...+.+|..+.+++.|+.+++++|...+.+| .+..+..+ +.+++++|+++ ..|..+..+.. ..+++..
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~  206 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCS
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            999999988888888889899999999999988777777 46666565 78888999888 45666666654 4789998


Q ss_pred             CCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc-ccc
Q 014575          198 CKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR-EVY  252 (422)
Q Consensus       198 ~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lp  252 (422)
                      +...+.+|..+..+++|+.+++++|...+.+| .++.+++|+.|++++|+++ .+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP  261 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCC
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCC
Confidence            88888899988999999999999987766655 5788899999999999987 444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.2e-18  Score=163.72  Aligned_cols=132  Identities=21%  Similarity=0.281  Sum_probs=73.9

Q ss_pred             hcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCc------------
Q 014575          115 LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPS------------  182 (422)
Q Consensus       115 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~------------  182 (422)
                      ...++|+.|++++|. +..+| .+..+++|+.|++++|. +..++.+..+++|++|+++++.++.+++            
T Consensus       216 ~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         216 GILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             GGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCc-cCCCCcccccccCCEeeccCcccCCCCccccccccccccc
Confidence            445566666666653 33343 25566677777777765 3345556666677777777666654432            


Q ss_pred             ---------cccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          183 ---------SIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       183 ---------~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                               .+..+++++.|++++|+ +..++. +..+++|++|++++| .++.+| .++.+++|++|++++|+++.+++
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~-l~~l~~-l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccccccccccchhcccCeEECCCCC-CCCCcc-cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCcCCCChh
Confidence                     13344555555555543 333332 555666666666665 334444 35556666666666666665544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=6.1e-17  Score=152.53  Aligned_cols=211  Identities=13%  Similarity=0.119  Sum_probs=156.5

Q ss_pred             EccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCccccccc-cccCCcchHHHHHhhccCCCCCC------
Q 014575           39 SYLVGPGFAEVRYLHWYGYPLKSLPS-NI-HPEKLVSIEMPHGNIQQLWD-DVEHNGKLKQIISRACNFFTKSP------  109 (422)
Q Consensus        39 ~lp~~l~~~~Lr~L~l~~~~l~~lP~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~l~~~~~~~~~~~~------  109 (422)
                      .+|.++. +++++|++++|.++.+|. .| .+++|++|++++|.+..+.+ .+..+++|+++....+.+.....      
T Consensus        24 ~lP~~l~-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l  102 (305)
T d1xkua_          24 KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL  102 (305)
T ss_dssp             SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTC
T ss_pred             ccCCCCC-CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhh
Confidence            3666553 789999999999999997 46 88999999999999998754 56778888877332222211110      


Q ss_pred             -------------cchhhhcCCCCcEEeccCCCCC--ccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeC
Q 014575          110 -------------NHSLTLHLDKLVNLNLNNCKSL--RILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG  174 (422)
Q Consensus       110 -------------~~~li~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~  174 (422)
                                   ....+.....++.++...+...  ...+..+..+++|+.+++++|... .+|. ..+++|+.|++++
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~-~~~~~L~~L~l~~  180 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ-GLPPSLTELHLDG  180 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS-SCCTTCSEEECTT
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc-ccCCccCEEECCC
Confidence                         0011334455556665554322  223345667889999999998644 4542 1256899999999


Q ss_pred             ccCc-ccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          175 TAIE-ELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       175 n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      |.++ ..+..+..++.++.|++++|...+..|..+.++++|++|+|++| .+..+|+.+..+++|+.|++++|+|+.++.
T Consensus       181 n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCccCccCh
Confidence            9888 44667899999999999997666555777889999999999997 567899999999999999999999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8e-17  Score=150.39  Aligned_cols=198  Identities=19%  Similarity=0.227  Sum_probs=157.5

Q ss_pred             EEecCCCCCCCCCCCCCCCceEEEccCCccccccc-cccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCC
Q 014575           52 LHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWD-DVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKS  130 (422)
Q Consensus        52 L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~  130 (422)
                      +..++..++++|..+ ++++++|+|++|+|++++. .+..+++|+++......+...  .+..+..+..++.+....+..
T Consensus        16 v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i--~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc--ccccccccccccccccccccc
Confidence            456677899999876 4689999999999999876 467778887774333332222  222366778889988876666


Q ss_pred             Cccc-cccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCccccc
Q 014575          131 LRIL-PAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPSS  207 (422)
Q Consensus       131 l~~l-p~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~  207 (422)
                      +..+ |..+.++++|++|++++|......+ .+..+++|+.+++++|.|+.+|+ .+..+++|+.|++++|+..+..|..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            6666 5667789999999999987655444 47778899999999999999875 5788999999999997654444567


Q ss_pred             ccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          208 LCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       208 l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +.++++|+.+++++|+..+..|..+..+++|+.|++++|.+..+|
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            889999999999999888888999999999999999999998664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.4e-16  Score=149.80  Aligned_cols=193  Identities=21%  Similarity=0.279  Sum_probs=145.7

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccC
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEH   90 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~   90 (422)
                      .++..+++++.|.+++|.+...       +. ... .+|+.|++.+|.++.+|.-..+++|+.|++++|.++++.+    
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~-------~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----  258 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDI-------TP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP----  258 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCC-------GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----
T ss_pred             cccccccccceeeccCCccCCC-------Cc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc----
Confidence            4566777777777776653221       11 122 6677777777777776643366777777777776665422    


Q ss_pred             CcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEE
Q 014575           91 NGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM  170 (422)
Q Consensus        91 l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L  170 (422)
                                             ++.+++|+.|+++++... .++. +.+++.++.+.++.|.. ..++.+..+++++.|
T Consensus       259 -----------------------~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~l~~l~~~~n~l-~~~~~~~~~~~l~~L  312 (384)
T d2omza2         259 -----------------------LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQL-EDISPISNLKNLTYL  312 (384)
T ss_dssp             -----------------------GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCC-SCCGGGGGCTTCSEE
T ss_pred             -----------------------ccccccCCEeeccCcccC-CCCc-ccccccccccccccccc-ccccccchhcccCeE
Confidence                                   567788999999998644 4444 66899999999999864 456778888999999


Q ss_pred             EeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcc
Q 014575          171 YLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       171 ~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~  247 (422)
                      ++++|+++.+++ +..+++|++|++++| .++.+| .+.++++|++|++++|+. ..++. +.++++|+.|++++|+
T Consensus       313 ~ls~n~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~l-~~l~~-l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         313 TLYFNNISDISP-VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQI-SDLTP-LANLTRITQLGLNDQA  384 (384)
T ss_dssp             ECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSCC-CBCGG-GTTCTTCSEEECCCEE
T ss_pred             ECCCCCCCCCcc-cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCcC-CCChh-hccCCCCCEeeCCCCc
Confidence            999999999874 889999999999997 466677 489999999999998755 45554 7899999999999884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.6e-16  Score=140.30  Aligned_cols=185  Identities=15%  Similarity=0.219  Sum_probs=102.1

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      .+|++|++.++.+++++.--.+++|++|++++|.+..+.+ +..+++++.+....+...+   .+. +..+++|+.++++
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~---i~~-l~~l~~L~~l~l~  115 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN---VSA-IAGLQSIKTLDLT  115 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC---CGG-GTTCTTCCEEECT
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccc---ccc-ccccccccccccc
Confidence            4455555555555555322255555555555555544321 2222222222111111100   111 4456677777777


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|..... +. +...+.++.+.+++|.. ...+.+..+++|+.|++++|.++..+. ++.+++|+.|+|++| .+..+|.
T Consensus       116 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~~  190 (227)
T d1h6ua2         116 STQITDV-TP-LAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP  190 (227)
T ss_dssp             TSCCCCC-GG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG
T ss_pred             ccccccc-ch-hccccchhhhhchhhhh-chhhhhccccccccccccccccccchh-hcccccceecccCCC-ccCCChh
Confidence            7654332 22 44666777777766543 333445566677777777777765543 667777777777775 3455554


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAE  244 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~  244 (422)
                       +..+++|++|+|++|+ +..+|. ++++++|+.|+++
T Consensus       191 -l~~l~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         191 -LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             -GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEE
T ss_pred             -hcCCCCCCEEECcCCc-CCCCcc-cccCCCCCEEEee
Confidence             6677777777777763 455553 6677777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.4e-16  Score=137.85  Aligned_cols=164  Identities=20%  Similarity=0.253  Sum_probs=127.5

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      .+|++|+++++.++.++.--.+++|++|++++|+|+.+..                           ++.+++|++|+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~---------------------------~~~l~~L~~L~l~   98 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---------------------------LANLKNLGWLFLD   98 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------GTTCTTCCEEECC
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc---------------------------cccCccccccccc
Confidence            5788888888888887753378889999999888876532                           4567788899998


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|+ +..+|. +.++++|+.|++++|.. ..++.+..+++|+.+++++|.++.++ .+..+++|+.+++++|. +..++.
T Consensus        99 ~n~-i~~l~~-l~~l~~L~~L~l~~~~~-~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~  173 (210)
T d1h6ta2          99 ENK-VKDLSS-LKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP  173 (210)
T ss_dssp             SSC-CCCGGG-GTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG
T ss_pred             ccc-cccccc-ccccccccccccccccc-cccccccccccccccccccccccccc-ccccccccccccccccc-cccccc
Confidence            875 556664 77888999999988764 45677888888999999998888755 46778889999999865 455654


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEG  245 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~  245 (422)
                       +.++++|+.|++++|. ++.+| .+..+++|+.|++++
T Consensus       174 -l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 -LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEE
T ss_pred             -ccCCCCCCEEECCCCC-CCCCh-hhcCCCCCCEEEccC
Confidence             7888999999998874 56676 478888999988764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=135.12  Aligned_cols=160  Identities=19%  Similarity=0.297  Sum_probs=108.7

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEecc
Q 014575           47 AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLN  126 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~  126 (422)
                      .+|++|+++++.+++++.--.+++|++|++++|+++.+.+                           ++.+++|++|+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~---------------------------l~~l~~L~~L~l~   92 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP---------------------------LKNLTKLVDILMN   92 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---------------------------GTTCTTCCEEECC
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc---------------------------ccCCccccccccc
Confidence            6677777777777777643367778888888877765432                           4566777778887


Q ss_pred             CCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccc
Q 014575          127 NCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPS  206 (422)
Q Consensus       127 ~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~  206 (422)
                      +|. ...++. +.+++.|+.|++++|.. ...+.+..+++|+.|++++|.+..+| .+..+++|+.|++.+|+ +..++.
T Consensus        93 ~n~-~~~~~~-l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~  167 (199)
T d2omxa2          93 NNQ-IADITP-LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP  167 (199)
T ss_dssp             SSC-CCCCGG-GTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG
T ss_pred             ccc-cccccc-ccccccccccccccccc-ccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCcc
Confidence            764 344443 66777788888877654 33455667777888888877777665 46677778888887754 445554


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEE
Q 014575          207 SLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSL  241 (422)
Q Consensus       207 ~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L  241 (422)
                       ++++++|+.|++++|+ +..+| .++.+++|++|
T Consensus       168 -l~~l~~L~~L~ls~N~-i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         168 -LANLTTLERLDISSNK-VSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             -GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEE
T ss_pred             -ccCCCCCCEEECCCCC-CCCCc-cccCCCCCCcC
Confidence             6777778888887764 45554 35667777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4e-16  Score=139.23  Aligned_cols=165  Identities=19%  Similarity=0.259  Sum_probs=136.8

Q ss_pred             CCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcch
Q 014575           16 KMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKL   94 (422)
Q Consensus        16 ~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L   94 (422)
                      .|.+|+.|+++++.+.        -..+++. ++|++|++++|.++.++....+++|+.|++++|+|+.++.        
T Consensus        44 ~L~~L~~L~l~~~~i~--------~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--------  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK--------SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--------  107 (210)
T ss_dssp             HHHTCCEEECTTSCCC--------CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--------
T ss_pred             HhcCccEEECcCCCCC--------CchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--------
Confidence            4678999999987642        2245666 9999999999999999876689999999999999987532        


Q ss_pred             HHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeC
Q 014575           95 KQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG  174 (422)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~  174 (422)
                                         +..+++|+.|++++|.. ..++. +.+++.|+.+++++|. +...+.+..+++|+.+++++
T Consensus       108 -------------------l~~l~~L~~L~l~~~~~-~~~~~-l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~  165 (210)
T d1h6ta2         108 -------------------LKDLKKLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLED  165 (210)
T ss_dssp             -------------------GTTCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCS
T ss_pred             -------------------ccccccccccccccccc-ccccc-cccccccccccccccc-cccccccccccccccccccc
Confidence                               45678899999999864 44554 7789999999999986 45566778889999999999


Q ss_pred             ccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccC
Q 014575          175 TAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRW  221 (422)
Q Consensus       175 n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~  221 (422)
                      |+++.+++ +..+++|+.|++++| .+..+|. +.++++|+.|+|++
T Consensus       166 n~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         166 NQISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEE
T ss_pred             cccccccc-ccCCCCCCEEECCCC-CCCCChh-hcCCCCCCEEEccC
Confidence            99998874 889999999999997 4677874 89999999999975

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.9e-15  Score=133.41  Aligned_cols=189  Identities=17%  Similarity=0.223  Sum_probs=144.5

Q ss_pred             EecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCc
Q 014575           53 HWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR  132 (422)
Q Consensus        53 ~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~  132 (422)
                      .+..+++..+...-.+.+|+.|++.+++|+.+ +++..+++|+++....+.+.+..   . +..+++|+++++++|. .+
T Consensus        25 ~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~---~-l~~l~~l~~l~~~~n~-~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA---P-LKNLTKITELELSGNP-LK   98 (227)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG---G-GTTCCSCCEEECCSCC-CS
T ss_pred             HhCCCCcCCcCCHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc---c-cccccccccccccccc-cc
Confidence            34444555443323678999999999999987 67888999988844444333322   1 6788999999999874 45


Q ss_pred             cccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCC
Q 014575          133 ILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLN  212 (422)
Q Consensus       133 ~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~  212 (422)
                      .++. +.++++|+.+++++|.. ..++.+...+.++.+.++++.+...+ .+...++|+.|++++|.. ...+. +.+++
T Consensus        99 ~i~~-l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~-~~~~~-l~~l~  173 (227)
T d1h6ua2          99 NVSA-IAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQV-SDLTP-LANLS  173 (227)
T ss_dssp             CCGG-GTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCC-CCCGG-GTTCT
T ss_pred             cccc-ccccccccccccccccc-cccchhccccchhhhhchhhhhchhh-hhcccccccccccccccc-ccchh-hcccc
Confidence            6654 77899999999998764 44556677788999999998887654 367788999999999754 44443 78999


Q ss_pred             CCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccccc
Q 014575          213 SLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYFF  254 (422)
Q Consensus       213 ~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~f  254 (422)
                      +|+.|++++| .+..+|. ++++++|++|++++|+++.+|.+
T Consensus       174 ~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~l  213 (227)
T d1h6ua2         174 KLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQISDVSPL  213 (227)
T ss_dssp             TCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCCCBCGGG
T ss_pred             cceecccCCC-ccCCChh-hcCCCCCCEEECcCCcCCCCccc
Confidence            9999999997 4566765 78899999999999999988764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.9e-15  Score=132.35  Aligned_cols=162  Identities=18%  Similarity=0.263  Sum_probs=133.5

Q ss_pred             hCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCccccccccccCCcc
Q 014575           15 TKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLWDDVEHNGK   93 (422)
Q Consensus        15 ~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~   93 (422)
                      ..+.+|+.|+++++.+.        --++++. ++|++|++++|.+..+++--.+++|++|++++|.+..+..       
T Consensus        37 ~~l~~l~~L~l~~~~i~--------~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-------  101 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIK--------SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-------  101 (199)
T ss_dssp             HHHTTCCEEECTTSCCC--------CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-------
T ss_pred             HHhcCCCEEECCCCCCC--------CccccccCCCcCcCccccccccCcccccCCcccccccccccccccccc-------
Confidence            45789999999997632        1245666 9999999999999998874488999999999998876532       


Q ss_pred             hHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEee
Q 014575           94 LKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN  173 (422)
Q Consensus        94 L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~  173 (422)
                                          +..+++|+.|++++|.... ++ .+..+++|+.|++++|. +..++.+..+++|+.|++.
T Consensus       102 --------------------l~~l~~L~~L~l~~~~~~~-~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~  158 (199)
T d2omxa2         102 --------------------LANLTNLTGLTLFNNQITD-ID-PLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFS  158 (199)
T ss_dssp             --------------------GTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECC
T ss_pred             --------------------ccccccccccccccccccc-cc-ccchhhhhHHhhhhhhh-hcccccccccccccccccc
Confidence                                5577889999999886554 33 37789999999999986 5667788999999999999


Q ss_pred             CccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEE
Q 014575          174 GTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFI  217 (422)
Q Consensus       174 ~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L  217 (422)
                      +|.++.+++ ++.+++|+.|++++|+ +..+|. ++.+++|+.|
T Consensus       159 ~n~l~~l~~-l~~l~~L~~L~ls~N~-i~~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         159 SNQVTDLKP-LANLTTLERLDISSNK-VSDISV-LAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred             cccccCCcc-ccCCCCCCEEECCCCC-CCCCcc-ccCCCCCCcC
Confidence            999999874 8899999999999975 667764 7889999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=1.2e-14  Score=127.49  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=128.9

Q ss_pred             eeEEEecCCCCCCCCCCCCCCCceEEEccCCcccccc-ccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccC
Q 014575           49 VRYLHWYGYPLKSLPSNIHPEKLVSIEMPHGNIQQLW-DDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNN  127 (422)
Q Consensus        49 Lr~L~l~~~~l~~lP~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~  127 (422)
                      .+.++.+++.+.++|..+ ++++++|+|++|+|+... ...                         ++.+++|+.|+|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~-------------------------f~~l~~L~~L~L~~   63 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGL-------------------------FGRLPHLVKLELKR   63 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCS-------------------------GGGCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccc-------------------------cCCCceEeeeeccc
Confidence            346788888999999887 479999999999997632 221                         67889999999999


Q ss_pred             CCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCccc
Q 014575          128 CKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLP  205 (422)
Q Consensus       128 ~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp  205 (422)
                      |......+..+..+++|++|+|++|......| .|.++++|++|+|++|+|+.+|+ .+..+++|++|+|++|......+
T Consensus        64 N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            98888888888899999999999987655555 48999999999999999999876 57899999999999976544332


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccc
Q 014575          206 SSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIR  249 (422)
Q Consensus       206 ~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~  249 (422)
                      .. .-...++.+.+..+......|..   +..++.++++.+.++
T Consensus       144 ~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         144 LA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             GH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             hH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCc
Confidence            21 11123455556555544455544   445666677777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.7e-14  Score=126.74  Aligned_cols=186  Identities=16%  Similarity=0.181  Sum_probs=95.1

Q ss_pred             ccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcC
Q 014575           40 YLVGPGFAEVRYLHWYGYPLKSLPSN-I-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHL  117 (422)
Q Consensus        40 lp~~l~~~~Lr~L~l~~~~l~~lP~~-~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l  117 (422)
                      +|+++. .++++|++++|.++.+|.. | ++++|++|++++|.+....+..                        .+..+
T Consensus        23 iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~------------------------~f~~l   77 (242)
T d1xwdc1          23 IPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD------------------------VFSNL   77 (242)
T ss_dssp             CCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSS------------------------SEESC
T ss_pred             cCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecc------------------------ccccc
Confidence            555443 6788999999999888875 4 7889999999998876542210                        03344


Q ss_pred             CCCcEEeccCCCCCccc-cccCCCCCCCCEEEeeCCCCCCCCcCCC---CCCCcCEEEeeCccCcccCc-cccCC-CCCC
Q 014575          118 DKLVNLNLNNCKSLRIL-PAGIFRLEFLKELDLWGCSKLKTLPEIS---SAGNIEVMYLNGTAIEELPS-SIECL-SRLS  191 (422)
Q Consensus       118 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~~~p~~~---~l~~L~~L~L~~n~i~~lp~-~i~~l-~~L~  191 (422)
                      +++++|.+..+..+..+ +..+.++++|+.|++++|.. ...+...   .+..+..+...++.+..++. .+..+ ..++
T Consensus        78 ~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l-~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~  156 (242)
T d1xwdc1          78 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  156 (242)
T ss_dssp             TTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCC-CSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             cccccccccccccccccccccccccccccccccchhhh-cccccccccccccccccccccccccccccccccccccccce
Confidence            45555554443333222 23334555555555555432 2233222   22233333334444544432 22222 2455


Q ss_pred             EEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcc-cCCCCCCCEEeccCccccccc
Q 014575          192 ALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDE-LGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       192 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      .|++++| .+..++.......+++.+....++.++.+|.. +..+++|+.|++++|+++.+|
T Consensus       157 ~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         157 ILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             EEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             eeecccc-cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            5555552 33344444444444444444344444555432 455555555555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.49  E-value=1e-12  Score=124.40  Aligned_cols=59  Identities=25%  Similarity=0.274  Sum_probs=39.6

Q ss_pred             CCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCcccccccc
Q 014575          187 LSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       187 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +++|++|++++|+ +..+|..   +++|+.|++++|+ ++.+|+.   +++|++|++++|+++.+|.
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N~-L~~l~~~---~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPAL---PPRLERLIASFNH-LAEVPEL---PQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCEEECCCCc-cCccccc---cCCCCEEECCCCc-CCccccc---cCCCCEEECcCCcCCCCCc
Confidence            4577788887753 5567753   5677777777753 5567654   3567778888887777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.3e-14  Score=127.40  Aligned_cols=198  Identities=17%  Similarity=0.203  Sum_probs=139.8

Q ss_pred             CCCceEEEecCCCCCCCceeEEccCC-CCC-CCeeEEEecCCCCCC-CCCC-C-CCCCceEEEccC-CccccccccccCC
Q 014575           18 CKLRFLKFYNSKDDGENKCKVSYLVG-PGF-AEVRYLHWYGYPLKS-LPSN-I-HPEKLVSIEMPH-GNIQQLWDDVEHN   91 (422)
Q Consensus        18 ~~L~~L~l~~~~~~~~~~~~~~lp~~-l~~-~~Lr~L~l~~~~l~~-lP~~-~-~~~~L~~L~L~~-~~l~~l~~~~~~l   91 (422)
                      ++++.|++++|.+.       .+|.+ +.. ++|++|++.+|.+.. +|.. | .++++.++.+.. +++.......   
T Consensus        29 ~~l~~L~Ls~n~i~-------~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~---   98 (242)
T d1xwdc1          29 RNAIELRFVLTKLR-------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA---   98 (242)
T ss_dssp             SCCSEEEEESCCCC-------EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS---
T ss_pred             CCCCEEECcCCcCC-------ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc---
Confidence            48999999998742       35553 555 999999999998765 4443 4 688999998764 5666654332   


Q ss_pred             cchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCCEE---EeeCCCCCCCCc--CCCCC-C
Q 014575           92 GKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKEL---DLWGCSKLKTLP--EISSA-G  165 (422)
Q Consensus        92 ~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L---~Ls~~~~l~~~p--~~~~l-~  165 (422)
                                            +..+++|+.|++++|.. ...+. ...+.+++.+   ...+ ..+..++  .+..+ .
T Consensus        99 ----------------------~~~l~~L~~l~l~~~~l-~~~~~-~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~  153 (242)
T d1xwdc1          99 ----------------------FQNLPNLQYLLISNTGI-KHLPD-VHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSF  153 (242)
T ss_dssp             ----------------------EECCTTCCEEEEESCCC-CSCCC-CTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBS
T ss_pred             ----------------------ccccccccccccchhhh-ccccc-ccccccccccccccccc-cccccccccccccccc
Confidence                                  56788999999999854 44443 3344444444   4444 3444444  34444 3


Q ss_pred             CcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCccccc-ccCCCCCcEEEccCCCCCCCCCc-ccCCCCCCCEEec
Q 014575          166 NIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSS-LCKLNSLNFIYLRWCSSLKSLPD-ELGNLEALDSLIA  243 (422)
Q Consensus       166 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~c~~l~~lp~-~~~~l~~L~~L~l  243 (422)
                      .++.|++++|+++.++..+....+++.+....++.++.+|.. +.++++|++|++++|+ +..+|. .+.++++|+.+++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcC
Confidence            788999999999999988888888888876666788888865 7889999999999976 556765 4556665555443


Q ss_pred             cCcccccccc
Q 014575          244 EGTAIREVYF  253 (422)
Q Consensus       244 ~~n~l~~lp~  253 (422)
                        ++++.+|.
T Consensus       233 --~~l~~lp~  240 (242)
T d1xwdc1         233 --YNLKKLPT  240 (242)
T ss_dssp             --ESSSCSCC
T ss_pred             --CCCCcCCC
Confidence              45667764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=8.8e-13  Score=124.90  Aligned_cols=70  Identities=20%  Similarity=0.331  Sum_probs=57.1

Q ss_pred             CCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEec
Q 014575          164 AGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIA  243 (422)
Q Consensus       164 l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l  243 (422)
                      +++|++|+|++|.|+.+|..   +++|+.|+|++|+ ++.+|..   +++|++|++++|+ +..+|+.+.   +|+.|.+
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~---~L~~L~~  351 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPEL---PQNLKQLHVEYNP-LREFPDIPE---SVEDLRM  351 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCCCCCT---TCCEEEC
T ss_pred             CCCCCEEECCCCccCccccc---cCCCCEEECCCCc-CCccccc---cCCCCEEECcCCc-CCCCCcccc---ccCeeEC
Confidence            46899999999999999964   5789999999964 6788863   5789999999986 788987653   5677765


Q ss_pred             c
Q 014575          244 E  244 (422)
Q Consensus       244 ~  244 (422)
                      +
T Consensus       352 ~  352 (353)
T d1jl5a_         352 N  352 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.6e-13  Score=110.27  Aligned_cols=105  Identities=18%  Similarity=0.165  Sum_probs=71.1

Q ss_pred             CEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCCCCcccccccCCCCCcEEEccCCCC
Q 014575          145 KELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKRLKSLPSSLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       145 ~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~  224 (422)
                      |.|+|++|. ++.++.+..+++|++|++++|.|+.+|+.++.+++|+.|++++| .+..+|. +..+++|+.|++++|. 
T Consensus         1 R~L~Ls~n~-l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCC-CCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCc-cccccccCeEECCCCc-
Confidence            456777765 34556666777777777777777777777777777777777774 4555654 6777777777777754 


Q ss_pred             CCCCC--cccCCCCCCCEEeccCcccccccc
Q 014575          225 LKSLP--DELGNLEALDSLIAEGTAIREVYF  253 (422)
Q Consensus       225 l~~lp--~~~~~l~~L~~L~l~~n~l~~lp~  253 (422)
                      +..+|  ..+..+++|+.|++++|++...+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            33333  346667777777777777765543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=6.6e-13  Score=116.17  Aligned_cols=130  Identities=15%  Similarity=0.094  Sum_probs=105.7

Q ss_pred             CcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccC-ccccCCCCCCEEecC
Q 014575          120 LVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELP-SSIECLSRLSALYLD  196 (422)
Q Consensus       120 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~  196 (422)
                      .+.++.+++ .+..+|..+.  +++++|+|++|...+.++  .+..+++|+.|+|++|.+..++ ..+..+++|++|+|+
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCC-CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356788775 5678888763  789999999998766554  4788999999999999999765 567889999999999


Q ss_pred             CCCCCCcccccccCCCCCcEEEccCCCCCCCCCcccCCCCCCCEEeccCccccccc
Q 014575          197 NCKRLKSLPSSLCKLNSLNFIYLRWCSSLKSLPDELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       197 ~~~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                      +|+....-|..|.++++|+.|+|++|...+.-|+.+..+++|++|+|++|.+...+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            97554444556889999999999997766666677899999999999999887544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.1e-13  Score=115.09  Aligned_cols=125  Identities=16%  Similarity=0.219  Sum_probs=100.4

Q ss_pred             hhcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccc-cCCCCCCE
Q 014575          114 TLHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI-ECLSRLSA  192 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~  192 (422)
                      +.++.+|++|+|++|+ +..+|..+..+++|+.|++++|. +..++.+..+++|++|++++|.++.+|..+ ..+++|+.
T Consensus        14 ~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCC-CCccCCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            4466789999999985 56667656679999999999986 556778899999999999999999998764 67999999


Q ss_pred             EecCCCCCCCcccc--cccCCCCCcEEEccCCCCCCCCCc----ccCCCCCCCEEe
Q 014575          193 LYLDNCKRLKSLPS--SLCKLNSLNFIYLRWCSSLKSLPD----ELGNLEALDSLI  242 (422)
Q Consensus       193 L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~c~~l~~lp~----~~~~l~~L~~L~  242 (422)
                      |++++|+ +..+++  .+..+++|++|++++|+. ...|.    .+..+++|+.||
T Consensus        92 L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEET
T ss_pred             ceecccc-ccccccccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeC
Confidence            9999964 555553  577899999999999754 45553    467788999876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2e-12  Score=104.93  Aligned_cols=97  Identities=26%  Similarity=0.338  Sum_probs=46.1

Q ss_pred             EEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc-CCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCCCC
Q 014575          122 NLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNCKR  200 (422)
Q Consensus       122 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~  200 (422)
                      .|+|++|. +..++. +.++++|++|++++|.. +.+| .++.+++|+.|++++|.|+.+| .+..+++|+.|++++|+ 
T Consensus         2 ~L~Ls~n~-l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           2 VLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-   76 (124)
T ss_dssp             EEECTTSC-CSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-
T ss_pred             EEEcCCCC-CCCCcc-cccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-
Confidence            44555542 233332 44555555555555432 2333 3455555555555555555554 24555555555555532 


Q ss_pred             CCccc--ccccCCCCCcEEEccCCC
Q 014575          201 LKSLP--SSLCKLNSLNFIYLRWCS  223 (422)
Q Consensus       201 l~~lp--~~l~~l~~L~~L~Ls~c~  223 (422)
                      +..+|  ..+..+++|+.|++++|+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCc
Confidence            22222  234455555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.4e-13  Score=112.37  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=45.2

Q ss_pred             CCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcC-CCCCCCcCEEEeeCccCcccCc--cccCCCCCCEE
Q 014575          117 LDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPS--SIECLSRLSAL  193 (422)
Q Consensus       117 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L  193 (422)
                      +++|+.|+|++|. +..++. +..+++|++|++++|......+. +..+++|+.|++++|.|+.++.  .+..+++|++|
T Consensus        40 l~~L~~L~Ls~N~-i~~l~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          40 LDQFDAIDFSDNE-IRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             TTCCSEEECCSSC-CCEECC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             cccCCEEECCCCC-CCccCC-cccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchh
Confidence            4444555555542 223332 44455555555555443222222 2334455555555555554442  34455555555


Q ss_pred             ecCCCCCCCcccc----cccCCCCCcEEE
Q 014575          194 YLDNCKRLKSLPS----SLCKLNSLNFIY  218 (422)
Q Consensus       194 ~L~~~~~l~~lp~----~l~~l~~L~~L~  218 (422)
                      ++++|. +...|.    .+..+++|+.||
T Consensus       118 ~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         118 CILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             hcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            555542 233332    244555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.9e-13  Score=125.98  Aligned_cols=175  Identities=21%  Similarity=0.259  Sum_probs=117.4

Q ss_pred             CCeeEEEecCCCCCC--CCCCC-CCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEE
Q 014575           47 AEVRYLHWYGYPLKS--LPSNI-HPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNL  123 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~--lP~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L  123 (422)
                      .+|++|+++++.+..  ++..+ .+++|++|+|+++.+...                         ....++.+++|++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-------------------------~~~~l~~~~~L~~L  100 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-------------------------IVNTLAKNSNLVRL  100 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-------------------------HHHHHTTCTTCSEE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH-------------------------HHHHHhcCCCCcCc
Confidence            667777777765432  33223 566777777777765431                         01115567889999


Q ss_pred             eccCCCCCcc--ccccCCCCCCCCEEEeeCCCCCCCC--c-CCC-CCCCcCEEEeeCc--cCc--ccCccccCCCCCCEE
Q 014575          124 NLNNCKSLRI--LPAGIFRLEFLKELDLWGCSKLKTL--P-EIS-SAGNIEVMYLNGT--AIE--ELPSSIECLSRLSAL  193 (422)
Q Consensus       124 ~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~~~~l~~~--p-~~~-~l~~L~~L~L~~n--~i~--~lp~~i~~l~~L~~L  193 (422)
                      ++++|..++.  +..-..++++|+.|++++|......  . .+. ..++|+.|+++++  .++  .+...+..+++|++|
T Consensus       101 ~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L  180 (284)
T d2astb2         101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  180 (284)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             cccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccc
Confidence            9999876653  2222346788999999998655422  1 122 2358999999875  344  344455678899999


Q ss_pred             ecCCCCCCC-cccccccCCCCCcEEEccCCCCCC-CCCcccCCCCCCCEEeccCc
Q 014575          194 YLDNCKRLK-SLPSSLCKLNSLNFIYLRWCSSLK-SLPDELGNLEALDSLIAEGT  246 (422)
Q Consensus       194 ~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n  246 (422)
                      ++++|..++ ..+..+.++++|++|++++|+.+. .....++++++|+.|++.++
T Consensus       181 ~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            999887554 455668888999999999986554 33445677889999999887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=8.2e-14  Score=122.82  Aligned_cols=104  Identities=23%  Similarity=0.324  Sum_probs=45.1

Q ss_pred             hcCCCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCcCC-CCCCCcCEEEeeCccCcccCccccCCCCCCEE
Q 014575          115 LHLDKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLPEI-SSAGNIEVMYLNGTAIEELPSSIECLSRLSAL  193 (422)
Q Consensus       115 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~-~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L  193 (422)
                      ..+++|++|+|++|. +..++. +.++++|+.|++++|. ++.+|.+ ..+++|+.|++++|.|+.++ .+..+++|+.|
T Consensus        45 ~~L~~L~~L~Ls~n~-I~~i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          45 STLKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCCEEECSEEE-ESCCCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEE
T ss_pred             hcccccceeECcccC-CCCccc-ccCCccccChhhcccc-cccccccccccccccccccccccccccc-ccccccccccc
Confidence            344444444444442 223332 4444444444444443 2233321 12234555555555555443 24444555555


Q ss_pred             ecCCCCCCCccc--ccccCCCCCcEEEccCCC
Q 014575          194 YLDNCKRLKSLP--SSLCKLNSLNFIYLRWCS  223 (422)
Q Consensus       194 ~L~~~~~l~~lp--~~l~~l~~L~~L~Ls~c~  223 (422)
                      ++++|+ +..++  ..+..+++|+.|++++|+
T Consensus       121 ~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccch-hccccccccccCCCccceeecCCCc
Confidence            555532 33333  234455555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.3e-12  Score=119.76  Aligned_cols=160  Identities=19%  Similarity=0.262  Sum_probs=119.2

Q ss_pred             CCCCCceEEEccCCccccccccccCCcchHHHHHhhccCCCCCCcchhhhcCCCCcEEeccCCCCCccccccCCCCCCCC
Q 014575           66 IHPEKLVSIEMPHGNIQQLWDDVEHNGKLKQIISRACNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPAGIFRLEFLK  145 (422)
Q Consensus        66 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~~li~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~  145 (422)
                      +.+.+|++|+++++.+..-        .+                ..++..+++|++|+|++|......+..+.++++|+
T Consensus        43 ~~~~~L~~LdLs~~~i~~~--------~l----------------~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~   98 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVS--------TL----------------HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV   98 (284)
T ss_dssp             CCCBCCCEEECTTCEECHH--------HH----------------HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             ccCCCCCEEECCCCccCHH--------HH----------------HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCc
Confidence            3567899999999887641        01                11266889999999999987767777788999999


Q ss_pred             EEEeeCCCCCCCCc--C-CCCCCCcCEEEeeCc-cCc--ccCccccC-CCCCCEEecCCCCC-CC--cccccccCCCCCc
Q 014575          146 ELDLWGCSKLKTLP--E-ISSAGNIEVMYLNGT-AIE--ELPSSIEC-LSRLSALYLDNCKR-LK--SLPSSLCKLNSLN  215 (422)
Q Consensus       146 ~L~Ls~~~~l~~~p--~-~~~l~~L~~L~L~~n-~i~--~lp~~i~~-l~~L~~L~L~~~~~-l~--~lp~~l~~l~~L~  215 (422)
                      +|++++|..++...  . ...+++|++|+++++ .++  .++..+.. .++|+.|++++|.. +.  .+......+++|+
T Consensus        99 ~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~  178 (284)
T d2astb2          99 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  178 (284)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             CccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccc
Confidence            99999997665322  2 346789999999986 455  33444433 47899999998742 22  2444456789999


Q ss_pred             EEEccCCCCCC-CCCcccCCCCCCCEEeccCc-ccc
Q 014575          216 FIYLRWCSSLK-SLPDELGNLEALDSLIAEGT-AIR  249 (422)
Q Consensus       216 ~L~Ls~c~~l~-~lp~~~~~l~~L~~L~l~~n-~l~  249 (422)
                      +|++++|..++ ..+..+.++++|++|++++| .++
T Consensus       179 ~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            99999997665 55667888999999999996 343

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=7.5e-13  Score=116.52  Aligned_cols=129  Identities=19%  Similarity=0.339  Sum_probs=105.9

Q ss_pred             CcEEeccCC-CCCccccccCCCCCCCCEEEeeCCCCCCCCcCCCCCCCcCEEEeeCccCcccCccccCCCCCCEEecCCC
Q 014575          120 LVNLNLNNC-KSLRILPAGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSRLSALYLDNC  198 (422)
Q Consensus       120 L~~L~L~~~-~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~  198 (422)
                      ++.+++.+. ..+..+|.++..+++|++|+|++|. ++.++.+..+++|+.|+|++|.|+.+|.....+++|+.|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcccccCCccccChhhcccccccccccccccccccccccccc
Confidence            556677653 2466778889899999999999986 55678888999999999999999999977777788999999996


Q ss_pred             CCCCcccccccCCCCCcEEEccCCCCCCCCC--cccCCCCCCCEEeccCccccccc
Q 014575          199 KRLKSLPSSLCKLNSLNFIYLRWCSSLKSLP--DELGNLEALDSLIAEGTAIREVY  252 (422)
Q Consensus       199 ~~l~~lp~~l~~l~~L~~L~Ls~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lp  252 (422)
                       .+..++. +..+++|+.|++++|. +..++  ..+..+++|+.|++++|++...+
T Consensus       104 -~i~~l~~-~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         104 -QIASLSG-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             -ECCCHHH-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             -ccccccc-ccccccccccccccch-hccccccccccCCCccceeecCCCccccCc
Confidence             5666654 7889999999999964 45555  35789999999999999887554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.1e-09  Score=91.99  Aligned_cols=102  Identities=20%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             CEEEeeCCCCCCCCcCCCCCCCcCEEEeeCc-cCcccCc-cccCCCCCCEEecCCCCCCCcc-cccccCCCCCcEEEccC
Q 014575          145 KELDLWGCSKLKTLPEISSAGNIEVMYLNGT-AIEELPS-SIECLSRLSALYLDNCKRLKSL-PSSLCKLNSLNFIYLRW  221 (422)
Q Consensus       145 ~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~n-~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~  221 (422)
                      +.++++++.....+..+..+++|++|+++++ .|+.++. .|..+++|+.|+|++|+ +..+ |..+..+++|+.|+|++
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccC
Confidence            3344444333222223444455555555433 3555543 34555555555555533 2333 33355555555555555


Q ss_pred             CCCCCCCCcccCCCCCCCEEeccCccc
Q 014575          222 CSSLKSLPDELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       222 c~~l~~lp~~~~~l~~L~~L~l~~n~l  248 (422)
                      | .++.+|...-...+|+.|+|++|.+
T Consensus        90 N-~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 N-ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             S-CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             C-CCcccChhhhccccccccccCCCcc
Confidence            3 2334444433333566666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.9e-09  Score=90.44  Aligned_cols=105  Identities=18%  Similarity=0.092  Sum_probs=87.6

Q ss_pred             CCCcEEeccCCCCCccccccCCCCCCCCEEEeeCCCCCCCCc--CCCCCCCcCEEEeeCccCcccC-ccccCCCCCCEEe
Q 014575          118 DKLVNLNLNNCKSLRILPAGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEELP-SSIECLSRLSALY  194 (422)
Q Consensus       118 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~  194 (422)
                      ...+.++.+++ .....|..+..+++|+.|++++++.++.++  .|.++++|+.|+|++|+|+.++ ..+..+++|++|+
T Consensus         8 ~~~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34567888875 455677778899999999999887777776  5899999999999999999995 4689999999999


Q ss_pred             cCCCCCCCcccccccCCCCCcEEEccCCCC
Q 014575          195 LDNCKRLKSLPSSLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       195 L~~~~~l~~lp~~l~~l~~L~~L~Ls~c~~  224 (422)
                      |++| .+..+|.......+|+.|+|++|+.
T Consensus        87 Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          87 LSFN-ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSS-CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccCC-CCcccChhhhccccccccccCCCcc
Confidence            9995 5678888766666899999999754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.97  E-value=6.3e-12  Score=119.70  Aligned_cols=237  Identities=10%  Similarity=0.084  Sum_probs=134.9

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC-CCeeEEEecCCCCCCCCCC-----------C-CCCCceEEEccC
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF-AEVRYLHWYGYPLKSLPSN-----------I-HPEKLVSIEMPH   78 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~-~~Lr~L~l~~~~l~~lP~~-----------~-~~~~L~~L~L~~   78 (422)
                      .++.++..|+.|+|++|.++..  ....+...+.. ++|+.|++.++........           + ..++|++|+|++
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~--~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHhhCCCCCEEECcCCcCCHH--HHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            4566777888888877643211  00113344555 7777777777654433211           1 346777788877


Q ss_pred             Ccccc-----ccccccCCcchHHHHHhhccCCCCC-----------CcchhhhcCCCCcEEeccCCCCCc----cccccC
Q 014575           79 GNIQQ-----LWDDVEHNGKLKQIISRACNFFTKS-----------PNHSLTLHLDKLVNLNLNNCKSLR----ILPAGI  138 (422)
Q Consensus        79 ~~l~~-----l~~~~~~l~~L~~l~~~~~~~~~~~-----------~~~~li~~l~~L~~L~L~~~~~l~----~lp~~i  138 (422)
                      |.+..     +...+...++|+++....+.+....           .........+.|+.|.+++|....    .+...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            76653     1122222333333311111000000           000002356678888888875331    233445


Q ss_pred             CCCCCCCEEEeeCCCCCCC-----C-cCCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCCc----
Q 014575          139 FRLEFLKELDLWGCSKLKT-----L-PEISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLKS----  203 (422)
Q Consensus       139 ~~l~~L~~L~Ls~~~~l~~-----~-p~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----  203 (422)
                      ...+.|+.|++++|.....     + ..+...++|+.|+|++|.++     .+...+...++|++|+|++|.....    
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            5677889999988865421     1 13566778999999988876     3556677888899999998764322    


Q ss_pred             cccccc--CCCCCcEEEccCCCCCC----CCCccc-CCCCCCCEEeccCccccc
Q 014575          204 LPSSLC--KLNSLNFIYLRWCSSLK----SLPDEL-GNLEALDSLIAEGTAIRE  250 (422)
Q Consensus       204 lp~~l~--~l~~L~~L~Ls~c~~l~----~lp~~~-~~l~~L~~L~l~~n~l~~  250 (422)
                      +-..+.  ..+.|+.|++++|+...    .+...+ .++++|+.|++++|.+.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            212222  23678899999876432    123333 246788899999988764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.9e-10  Score=110.83  Aligned_cols=69  Identities=13%  Similarity=0.083  Sum_probs=45.8

Q ss_pred             hhhhCCCCCceEEEecCCCCCCCceeEEccCCCCC--CCeeEEEecCCCCCC-----CCCCC-CCCCceEEEccCCccc
Q 014575           12 DTFTKMCKLRFLKFYNSKDDGENKCKVSYLVGPGF--AEVRYLHWYGYPLKS-----LPSNI-HPEKLVSIEMPHGNIQ   82 (422)
Q Consensus        12 ~~f~~m~~L~~L~l~~~~~~~~~~~~~~lp~~l~~--~~Lr~L~l~~~~l~~-----lP~~~-~~~~L~~L~L~~~~l~   82 (422)
                      .++..+++|+.|+|++|.++..  ....+.+.+..  .+|+.|++++|.+..     ++..+ ..++|++|++++|.|.
T Consensus        49 ~~L~~~~~L~~LdLs~N~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          49 SALRVNPALAELNLRSNELGDV--GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHH--HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHhcCCCCCEEECcCCcCChH--HHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            4567788888888887764211  11123445554  579999999988754     33334 5678999999988764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=9.8e-09  Score=97.05  Aligned_cols=36  Identities=19%  Similarity=0.183  Sum_probs=25.2

Q ss_pred             CCeeEEEecCCCCCC-----CCCCC-CCCCceEEEccCCccc
Q 014575           47 AEVRYLHWYGYPLKS-----LPSNI-HPEKLVSIEMPHGNIQ   82 (422)
Q Consensus        47 ~~Lr~L~l~~~~l~~-----lP~~~-~~~~L~~L~L~~~~l~   82 (422)
                      ..|+.|++++|.+..     +-..+ ..++|+.|+++++.+.
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~   72 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG   72 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccc
Confidence            778899999887532     32233 5678899998877554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.6e-07  Score=85.45  Aligned_cols=106  Identities=14%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             CCcEEeccCCCCCccc-cccCCCCCCCCEEEeeCCCCCC----CCc-CCCCCCCcCEEEeeCccCcc-----cCcccc-C
Q 014575          119 KLVNLNLNNCKSLRIL-PAGIFRLEFLKELDLWGCSKLK----TLP-EISSAGNIEVMYLNGTAIEE-----LPSSIE-C  186 (422)
Q Consensus       119 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~~~~l~----~~p-~~~~l~~L~~L~L~~n~i~~-----lp~~i~-~  186 (422)
                      +|+.|||++++....- ..-+..++++++|+|++|....    .++ .+..+++|+.|+|++|.|+.     +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5778888776554321 2223356778888888886331    111 24566778888888887752     222222 2


Q ss_pred             CCCCCEEecCCCCCCC----cccccccCCCCCcEEEccCCCC
Q 014575          187 LSRLSALYLDNCKRLK----SLPSSLCKLNSLNFIYLRWCSS  224 (422)
Q Consensus       187 l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~c~~  224 (422)
                      ..+|+.|+|++|....    .++..+..+++|++|++++|..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            2467888887765322    2445566677777777777653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=6.1e-06  Score=68.78  Aligned_cols=80  Identities=20%  Similarity=0.113  Sum_probs=51.2

Q ss_pred             CCCCCcCEEEeeCccCcccC---ccccCCCCCCEEecCCCCCCCcccc-cccCCCCCcEEEccCCCCCCCCCc-------
Q 014575          162 SSAGNIEVMYLNGTAIEELP---SSIECLSRLSALYLDNCKRLKSLPS-SLCKLNSLNFIYLRWCSSLKSLPD-------  230 (422)
Q Consensus       162 ~~l~~L~~L~L~~n~i~~lp---~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~c~~l~~lp~-------  230 (422)
                      ..+++|++|+|++|+|+.++   ..+..+++|+.|+|++| .+..+++ .......|+.|++++|+.......       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34667888888888887654   34567788888888884 4555554 222344677888888766554432       


Q ss_pred             ccCCCCCCCEEe
Q 014575          231 ELGNLEALDSLI  242 (422)
Q Consensus       231 ~~~~l~~L~~L~  242 (422)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245667777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1e-05  Score=67.39  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=41.0

Q ss_pred             CCCCCCEEEeeCCCCCCCC--c-CCCCCCCcCEEEeeCccCcccCc-cccCCCCCCEEecCCCCCCCcccc-------cc
Q 014575          140 RLEFLKELDLWGCSKLKTL--P-EISSAGNIEVMYLNGTAIEELPS-SIECLSRLSALYLDNCKRLKSLPS-------SL  208 (422)
Q Consensus       140 ~l~~L~~L~Ls~~~~l~~~--p-~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-------~l  208 (422)
                      +++.|++|+|++|.....-  + .+..+++|+.|+|++|.|+.++. ......+|+.|++++|........       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3455555555555432211  1 13345566666666666666654 122334567777777654443321       14


Q ss_pred             cCCCCCcEEE
Q 014575          209 CKLNSLNFIY  218 (422)
Q Consensus       209 ~~l~~L~~L~  218 (422)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4567777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.15  E-value=8.2e-05  Score=61.95  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=44.8

Q ss_pred             hhcCCCCcEEeccCCCCCcc-----ccccCCCCCCCCEEEeeCCCCCCC----Cc-CCCCCCCcCEEEeeCccCcc----
Q 014575          114 TLHLDKLVNLNLNNCKSLRI-----LPAGIFRLEFLKELDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIEE----  179 (422)
Q Consensus       114 i~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~~~l~~----~p-~~~~l~~L~~L~L~~n~i~~----  179 (422)
                      ..+.+.|+.|+|++++.++.     +-..+...++|+.|+|++|.....    +. .+...+.|+.|+|++|.|+.    
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            34556788888876543321     223344556677777777643211    11 13334566666666666552    


Q ss_pred             -cCccccCCCCCCEEecCCC
Q 014575          180 -LPSSIECLSRLSALYLDNC  198 (422)
Q Consensus       180 -lp~~i~~l~~L~~L~L~~~  198 (422)
                       +-..+..-+.|++|++++|
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhCCcCCEEECCCC
Confidence             2233444455666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.05  E-value=0.00011  Score=61.25  Aligned_cols=108  Identities=18%  Similarity=0.047  Sum_probs=74.0

Q ss_pred             CCCCCCEEEeeCCCCCCCC------cCCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCCc----c
Q 014575          140 RLEFLKELDLWGCSKLKTL------PEISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLKS----L  204 (422)
Q Consensus       140 ~l~~L~~L~Ls~~~~l~~~------p~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----l  204 (422)
                      +.++|+.|+|+++..++.-      ..+...++|+.|+|++|.++     .+...+...+.|+.|+|++|.....    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            5688999999986533321      13667788999999999887     2334566778999999999754321    2


Q ss_pred             cccccCCCCCcEEEccCCCCC--C-----CCCcccCCCCCCCEEeccCcc
Q 014575          205 PSSLCKLNSLNFIYLRWCSSL--K-----SLPDELGNLEALDSLIAEGTA  247 (422)
Q Consensus       205 p~~l~~l~~L~~L~Ls~c~~l--~-----~lp~~~~~l~~L~~L~l~~n~  247 (422)
                      -..+..-++|++|++++|...  +     .+.+.+..-++|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            334666788999999876422  1     133344456788999887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.44  E-value=0.00049  Score=56.80  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=17.2

Q ss_pred             cCCCCcEEeccCCCCCcc-----ccccCCCCCCCCEEEeeCC
Q 014575          116 HLDKLVNLNLNNCKSLRI-----LPAGIFRLEFLKELDLWGC  152 (422)
Q Consensus       116 ~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~~  152 (422)
                      +.++|++|+|+++..++.     +-..+...+.|+.|++++|
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            445666666665432221     2222334445555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.28  E-value=0.00081  Score=55.38  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=77.0

Q ss_pred             CCCCCCCEEEeeCCCCCCCCc------CCCCCCCcCEEEeeCccCc-----ccCccccCCCCCCEEecCCCCCCC----c
Q 014575          139 FRLEFLKELDLWGCSKLKTLP------EISSAGNIEVMYLNGTAIE-----ELPSSIECLSRLSALYLDNCKRLK----S  203 (422)
Q Consensus       139 ~~l~~L~~L~Ls~~~~l~~~p------~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~----~  203 (422)
                      .+.++|+.|+++++..++.-.      .+...++|++|+|++|.++     .+-..+...+.|+.|++++|....    .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            366899999999854332211      3567889999999999887     344456778899999999976432    2


Q ss_pred             ccccccCCCCCcEEEccCCC-CCC-----CCCcccCCCCCCCEEeccCccc
Q 014575          204 LPSSLCKLNSLNFIYLRWCS-SLK-----SLPDELGNLEALDSLIAEGTAI  248 (422)
Q Consensus       204 lp~~l~~l~~L~~L~Ls~c~-~l~-----~lp~~~~~l~~L~~L~l~~n~l  248 (422)
                      +-..+...++|+.++|..|. .++     .+.+.+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            33456778899987776432 332     2344455678999999987754