Citrus Sinensis ID: 014576

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALKV
ccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHccccHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHccccccccccHHHccccEcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHcHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHcHHHHHHHHHHcHHHHHccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHccEEEEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHccc
mrlsgdvagtKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSrkisprvfdadpskekkkpkegdnvveeapadipSLLELKRIYYELMIRYYSHNNDYLEICRCYKAiyeipyikedpaqwmPVLRKICWYLvlaphdpmqssllnstledknlseipNFRLLLKQLVTMEVIQWTSLWNTYKDEFenetnmlggslgaKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAkidrpqgivCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALKV
mrlsgdvagtkkAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKtlnsvsagkiyvEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQilsrkisprvfdadpskekkkpkegdnvveeapadipsllELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIhketmvhktalkv
MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKqavtamvqqamqYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALKV
***********KAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKI*****************************IPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHD*************KNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKE**********
*RLS**VAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSS*****LEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTAL**
*********TKKAVTEILQLCFEAKDWKTLNEQIVNLSK*********TAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFD****************VEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALKV
*******AGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADP****KK****DNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTAL**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTALKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
Q54UJ0447 26S proteasome non-ATPase yes no 0.924 0.872 0.432 7e-99
O00232456 26S proteasome non-ATPase yes no 0.928 0.859 0.436 2e-98
Q5RBI3456 26S proteasome non-ATPase yes no 0.928 0.859 0.436 2e-98
Q2KJ25456 26S proteasome non-ATPase yes no 0.928 0.859 0.436 3e-98
Q9D8W5456 26S proteasome non-ATPase yes no 0.928 0.859 0.428 1e-97
Q12250445 26S proteasome regulatory yes no 0.928 0.880 0.390 1e-75
Q9UTM3443 26S proteasome regulatory yes no 0.931 0.887 0.376 3e-74
Q9V345407 COP9 signalosome complex no no 0.694 0.719 0.238 3e-08
Q9N359412 COP9 signalosome complex no no 0.362 0.371 0.285 4e-07
Q54B82393 COP9 signalosome complex no no 0.187 0.201 0.365 2e-05
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1 Back     alignment and function desciption
 Score =  361 bits (926), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 180/416 (43%), Positives = 272/416 (65%), Gaps = 26/416 (6%)

Query: 2   RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ 61
           R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+ A+ A+VQ++M Y+DQ
Sbjct: 56  RQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQ 115

Query: 62  TPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 121
             D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+
Sbjct: 116 ITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETY 175

Query: 122 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181
           G M K EKI F ++Q+R+C++ +D++RAQ++  K++ +    D ++              
Sbjct: 176 GTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQ-------------- 221

Query: 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241
                    +LK  Y++ MIRY+SH+ +Y+EI RCY +IY+ P +++D  Q +  L+ IC
Sbjct: 222 ---------DLKIDYFKQMIRYFSHSANYIEIARCYLSIYDTPSVEKDTPQLLQTLKYIC 272

Query: 242 WYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENE 301
            Y++L+     QS LLN   E K L++I N++ LL Q  T+E+I+W++ +   K E +++
Sbjct: 273 IYVILSASSNEQSDLLNRVYEFKPLTDIQNYKDLLNQFKTLELIRWSTFFELNKPELDSQ 332

Query: 302 TNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVV 361
           T          A EDLR+R+IEHNI V+S YY +I+  RLAELL LS+ E+EK +SD+V 
Sbjct: 333 TVF---KTEPNAWEDLRKRVIEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVS 389

Query: 362 SKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK 417
           +K + AKIDRP GI  F    D N +LN+WA N+  LLDLVEK+ H + +E M+HK
Sbjct: 390 NKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDLVEKTNHLVQREFMLHK 445
Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
Dictyostelium discoideum (taxid: 44689)
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3 Back     alignment and function description
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3 Back     alignment and function description
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3 Back     alignment and function description
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=1 SV=4 Back     alignment and function description
>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN5 PE=1 SV=3 Back     alignment and function description
>sp|Q9UTM3|RPN5_SCHPO 26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn5a PE=1 SV=1 Back     alignment and function description
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster GN=CSN4 PE=1 SV=1 Back     alignment and function description
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans GN=csn-4 PE=1 SV=1 Back     alignment and function description
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum GN=csn4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
224093940442 predicted protein [Populus trichocarpa] 1.0 0.954 0.936 0.0
118487751442 unknown [Populus trichocarpa] 1.0 0.954 0.936 0.0
224081300442 predicted protein [Populus trichocarpa] 1.0 0.954 0.921 0.0
356512782441 PREDICTED: 26S proteasome non-ATPase reg 0.997 0.954 0.902 0.0
356525563441 PREDICTED: 26S proteasome non-ATPase reg 0.997 0.954 0.900 0.0
225438483442 PREDICTED: 26S proteasome non-ATPase reg 1.0 0.954 0.909 0.0
192912954440 26S proteasome subunit RPN5b [Elaeis gui 0.997 0.956 0.914 0.0
356509020443 PREDICTED: 26S proteasome non-ATPase reg 0.995 0.948 0.881 0.0
217074398441 unknown [Medicago truncatula] gi|3885018 0.997 0.954 0.872 0.0
356516317443 PREDICTED: 26S proteasome non-ATPase reg 0.995 0.948 0.874 0.0
>gi|224093940|ref|XP_002310051.1| predicted protein [Populus trichocarpa] gi|222852954|gb|EEE90501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/422 (93%), Positives = 409/422 (96%)

Query: 1   MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYID 60
           MRL+GDVAGTKKAVTEILQLCFEAKDWK LN+QI+ LSKKRGQLKQAVTAMVQQAMQYID
Sbjct: 21  MRLAGDVAGTKKAVTEILQLCFEAKDWKALNDQIILLSKKRGQLKQAVTAMVQQAMQYID 80

Query: 61  QTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVET 120
           +T DLDTRIELIKTLNSVSAGKIYVEIERARLI+KLAKIKEEQGLIAEAADLMQEVAVET
Sbjct: 81  ETLDLDTRIELIKTLNSVSAGKIYVEIERARLIRKLAKIKEEQGLIAEAADLMQEVAVET 140

Query: 121 FGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVE 180
           FGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDAD SKEKKKPKEGDNVVE
Sbjct: 141 FGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADTSKEKKKPKEGDNVVE 200

Query: 181 EAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKI 240
           EAPADIPSLLELKRIYYELMIRYYSH+NDYLEICRCYKAIYEIP +KE+PAQW+PVLRKI
Sbjct: 201 EAPADIPSLLELKRIYYELMIRYYSHDNDYLEICRCYKAIYEIPPVKENPAQWIPVLRKI 260

Query: 241 CWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFEN 300
           CWYLVLAPHDPMQSSLLNSTLEDKNLSEI NF+LLLKQLVTMEVIQWTSLWN + DEFEN
Sbjct: 261 CWYLVLAPHDPMQSSLLNSTLEDKNLSEISNFKLLLKQLVTMEVIQWTSLWNAFMDEFEN 320

Query: 301 ETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMV 360
           E N+LGGSLG KAAEDL+QRIIEHNILVVSKYYSRIT+KRLAELLCLSIQEAEKHLSDMV
Sbjct: 321 EKNLLGGSLGDKAAEDLKQRIIEHNILVVSKYYSRITVKRLAELLCLSIQEAEKHLSDMV 380

Query: 361 VSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTAL 420
           VSKALVAKIDRP GIV FQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHK AL
Sbjct: 381 VSKALVAKIDRPMGIVSFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKAAL 440

Query: 421 KV 422
           KV
Sbjct: 441 KV 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118487751|gb|ABK95699.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081300|ref|XP_002306365.1| predicted protein [Populus trichocarpa] gi|222855814|gb|EEE93361.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512782|ref|XP_003525095.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Glycine max] Back     alignment and taxonomy information
>gi|356525563|ref|XP_003531394.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Glycine max] Back     alignment and taxonomy information
>gi|225438483|ref|XP_002278249.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|192912954|gb|ACF06585.1| 26S proteasome subunit RPN5b [Elaeis guineensis] Back     alignment and taxonomy information
>gi|356509020|ref|XP_003523250.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Glycine max] Back     alignment and taxonomy information
>gi|217074398|gb|ACJ85559.1| unknown [Medicago truncatula] gi|388501898|gb|AFK39015.1| unknown [Medicago truncatula] gi|388507790|gb|AFK41961.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356516317|ref|XP_003526842.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
TAIR|locus:2176100442 RPN5B "AT5G64760" [Arabidopsis 0.997 0.952 0.821 1.5e-186
TAIR|locus:2178138462 EMB2107 "AT5G09900" [Arabidops 0.767 0.701 0.827 8.6e-143
DICTYBASE|DDB_G0281051447 psmD12 "26S proteasome non-ATP 0.530 0.501 0.458 8e-89
ZFIN|ZDB-GENE-030131-617456 psmd12 "proteasome (prosome, m 0.928 0.859 0.447 3.2e-88
UNIPROTKB|F1NPQ0456 LOC100859465 "Uncharacterized 0.928 0.859 0.431 4.7e-87
UNIPROTKB|O00232456 PSMD12 "26S proteasome non-ATP 0.928 0.859 0.426 8.9e-86
UNIPROTKB|Q5RBI3456 PSMD12 "26S proteasome non-ATP 0.928 0.859 0.426 8.9e-86
UNIPROTKB|Q2KJ25456 PSMD12 "26S proteasome non-ATP 0.928 0.859 0.428 1.4e-85
UNIPROTKB|F1RSM2456 PSMD12 "Uncharacterized protei 0.928 0.859 0.426 1.4e-85
RGD|1359305456 Psmd12 "proteasome (prosome, m 0.928 0.859 0.419 6.2e-85
TAIR|locus:2176100 RPN5B "AT5G64760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1809 (641.9 bits), Expect = 1.5e-186, P = 1.5e-186
 Identities = 346/421 (82%), Positives = 385/421 (91%)

Query:     1 MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYID 60
             MRL+ +VAGT+KA TEIL+LCFEAKDWK LNEQI+NLSKKRGQLK            YID
Sbjct:    21 MRLAENVAGTRKAATEILKLCFEAKDWKLLNEQILNLSKKRGQLKQAVQSMVQQAMQYID 80

Query:    61 QTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVET 120
             QT D++TRIELIKTLN+V+AGKIYVEIERARL K LAKIKEEQGLIAEAADLMQEVAVET
Sbjct:    81 QTLDIETRIELIKTLNNVAAGKIYVEIERARLTKMLAKIKEEQGLIAEAADLMQEVAVET 140

Query:   121 FGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVE 180
             FGAMAKTEKIAFILEQVRLCLD++D+VRAQILSRKI+PRVFDAD +KEKKKPKEG+N+VE
Sbjct:   141 FGAMAKTEKIAFILEQVRLCLDQKDFVRAQILSRKINPRVFDADTTKEKKKPKEGENMVE 200

Query:   181 EAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKI 240
             EAPADIP+LL LKRIYYELMIRYYSHNN+Y+EICR YKAIY+IP +KE+P QW+PVLRKI
Sbjct:   201 EAPADIPTLLVLKRIYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKENPEQWIPVLRKI 260

Query:   241 CWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFEN 300
             CW+L LAPHDPMQSSLLN+TLEDK LSEIP+F++LLKQ+VTMEVIQWTSLWN YKDEFEN
Sbjct:   261 CWFLALAPHDPMQSSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQWTSLWNKYKDEFEN 320

Query:   301 ETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMV 360
             E NM+GGSLG KA EDL+ RIIEHNILVVSKYYSRIT KRLAELLCL+ +EAEKHLS+MV
Sbjct:   321 EKNMIGGSLGDKAGEDLKLRIIEHNILVVSKYYSRITFKRLAELLCLTTEEAEKHLSEMV 380

Query:   361 VSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVHKTAL 420
             VSKAL+AKIDRP GI+CFQ+ KDSN+ILNSWA NLEKLLDLVEKSCHQIHKETMVHK AL
Sbjct:   381 VSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKLLDLVEKSCHQIHKETMVHKVAL 440

Query:   421 K 421
             +
Sbjct:   441 R 441
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA;TAS
GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS
GO:0030163 "protein catabolic process" evidence=TAS
GO:0005737 "cytoplasm" evidence=IDA
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0000502 "proteasome complex" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051510 "regulation of unidimensional cell growth" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2178138 EMB2107 "AT5G09900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281051 psmD12 "26S proteasome non-ATPase regulatory subunit 12" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-617 psmd12 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPQ0 LOC100859465 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O00232 PSMD12 "26S proteasome non-ATPase regulatory subunit 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBI3 PSMD12 "26S proteasome non-ATPase regulatory subunit 12" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ25 PSMD12 "26S proteasome non-ATPase regulatory subunit 12" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSM2 PSMD12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1359305 Psmd12 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q12250RPN5_YEASTNo assigned EC number0.39080.92890.8808yesno
O00232PSD12_HUMANNo assigned EC number0.43600.92890.8596yesno
Q54UJ0PSD12_DICDINo assigned EC number0.43260.92410.8724yesno
Q9D8W5PSD12_MOUSENo assigned EC number0.42890.92890.8596yesno
Q9UTM3RPN5_SCHPONo assigned EC number0.37640.93120.8871yesno
Q5RBI3PSD12_PONABNo assigned EC number0.43600.92890.8596yesno
Q2KJ25PSD12_BOVINNo assigned EC number0.43600.92890.8596yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
COG5071439 COG5071, RPN5, 26S proteasome regulatory complex c 1e-100
pfam01399100 pfam01399, PCI, PCI domain 1e-17
smart0075388 smart00753, PAM, PCI/PINT associated module 1e-12
smart0008888 smart00088, PINT, motif in proteasome subunits, In 1e-12
>gnl|CDD|227403 COG5071, RPN5, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  306 bits (785), Expect = e-100
 Identities = 160/415 (38%), Positives = 241/415 (58%), Gaps = 23/415 (5%)

Query: 2   RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQ 61
           R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLKQ++T+M+Q  M+Y+  
Sbjct: 43  RQASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKG 102

Query: 62  TPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETF 121
             DL T+I LI+TL +V+ GKI+VE+ERARL + L++IKEEQG I  A D++    VET+
Sbjct: 103 IDDLKTKINLIETLRTVTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETY 162

Query: 122 GAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEE 181
           G+   +EK+AFILEQVRL L R DY  A   ++KI+ + F+                   
Sbjct: 163 GSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEK------------------ 204

Query: 182 APADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKIC 241
                  +  LK  YYEL +R   H+  YL++C+ Y+A+Y+   ++EDPA+W  VL  + 
Sbjct: 205 -----EDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVV 259

Query: 242 WYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENE 301
            + +L P+D  Q+ LL+    D  L+ +P  + L+K  +  E+++W  +   Y     + 
Sbjct: 260 CFALLTPYDNEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSALRSN 319

Query: 302 TNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVV 361
                   G K   DLR+R+IEHNI V++ YYSRI   RL  LL +S  E E+ +SD+V 
Sbjct: 320 VFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVN 379

Query: 362 SKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 416
                AKI+RP  I+ F+ +++  + LN W  N+ +LL  +EK  H I KE M++
Sbjct: 380 KGHFYAKINRPAQIISFEKSQNVQEQLNEWGSNVTELLGKLEKVRHLIIKEEMMN 434

Length = 439
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
KOG1498439 consensus 26S proteasome regulatory complex, subun 100.0
COG5071439 RPN5 26S proteasome regulatory complex component [ 100.0
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 100.0
KOG1463411 consensus 26S proteasome regulatory complex, subun 100.0
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 100.0
COG5159421 RPN6 26S proteasome regulatory complex component [ 100.0
KOG0687393 consensus 26S proteasome regulatory complex, subun 99.94
COG5187412 RPN7 26S proteasome regulatory complex component, 99.85
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.67
KOG0686466 consensus COP9 signalosome, subunit CSN1 [Posttran 99.52
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 99.5
smart0075388 PAM PCI/PINT associated module. 99.5
KOG2908380 consensus 26S proteasome regulatory complex, subun 99.46
KOG2581493 consensus 26S proteasome regulatory complex, subun 99.23
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 98.98
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 98.95
KOG2758432 consensus Translation initiation factor 3, subunit 98.61
KOG1076843 consensus Translation initiation factor 3, subunit 97.83
KOG2753378 consensus Uncharacterized conserved protein, conta 97.4
KOG2072 988 consensus Translation initiation factor 3, subunit 96.68
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 96.67
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 96.62
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 96.39
COG5600413 Transcription-associated recombination protein [DN 96.37
PF10075143 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro 96.13
KOG2688394 consensus Transcription-associated recombination p 95.96
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 95.38
PRK11788389 tetratricopeptide repeat protein; Provisional 95.2
PRK11788389 tetratricopeptide repeat protein; Provisional 95.13
PRK10747398 putative protoheme IX biogenesis protein; Provisio 95.11
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 94.29
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 93.93
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 93.77
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 93.75
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 93.34
PF08784102 RPA_C: Replication protein A C terminal; InterPro: 92.5
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 92.39
KOG2003840 consensus TPR repeat-containing protein [General f 92.23
COG3107 604 LppC Putative lipoprotein [General function predic 92.13
KOG2076 895 consensus RNA polymerase III transcription factor 91.36
PF09756188 DDRGK: DDRGK domain; InterPro: IPR019153 This is a 90.89
cd00189100 TPR Tetratricopeptide repeat domain; typically con 90.74
KOG1586288 consensus Protein required for fusion of vesicles 90.7
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 90.47
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 90.46
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 89.89
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 89.72
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 89.06
PF04348 536 LppC: LppC putative lipoprotein; InterPro: IPR0074 89.06
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 88.11
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 87.47
PLN03218 1060 maturation of RBCL 1; Provisional 86.53
PRK02603172 photosystem I assembly protein Ycf3; Provisional 85.71
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 85.68
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 85.5
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 84.67
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 84.57
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 84.07
TIGR02552135 LcrH_SycD type III secretion low calcium response 83.97
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 83.49
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 83.28
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 83.23
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 82.76
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 82.43
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 82.25
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 82.13
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 81.17
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 80.6
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 80.17
PRK10370198 formate-dependent nitrite reductase complex subuni 80.14
PRK14574 822 hmsH outer membrane protein; Provisional 80.02
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.9e-104  Score=764.13  Aligned_cols=397  Identities=60%  Similarity=0.919  Sum_probs=385.0

Q ss_pred             CccCCChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHhhhc
Q 014576            1 MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPDLDTRIELIKTLNSVSA   80 (422)
Q Consensus         1 ~R~~~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~~~~~~~li~tL~~~~~   80 (422)
                      ||+++|+.|++|++..|+++||.+++|+.|++++..|+|||||+|+||++||+++|.|++++||.+++++||+||+.||+
T Consensus        42 tR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~Vte  121 (439)
T KOG1498|consen   42 TRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTE  121 (439)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcccc
Q 014576           81 GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRV  160 (422)
Q Consensus        81 ~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~~~  160 (422)
                      ||||||+||||+|..||+++|++|++++||++|+++||||||+|+.++|++|+|||||||+..+||++|+++++||+.++
T Consensus       122 gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~  201 (439)
T KOG1498|consen  122 GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKF  201 (439)
T ss_pred             CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 014576          161 FDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRKI  240 (422)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~~~  240 (422)
                      |+.+                       +.+++|++||++|++++.|++.|+++|++|+++++++.++.||++|..+|.++
T Consensus       202 F~~~-----------------------~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i  258 (439)
T KOG1498|consen  202 FEKP-----------------------DVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI  258 (439)
T ss_pred             cCCc-----------------------cHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence            9853                       45799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCChhhhHHhhhhhcccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHHHH
Q 014576          241 CWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLRQR  320 (422)
Q Consensus       241 v~~~ILa~~~~~rs~ll~~~~~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~~~  320 (422)
                      ++|++|||++++++++++++..|+.++++|.++.+++.|.+++|++|+.+...|++.+....-..++..|+.||++|+.|
T Consensus       259 v~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~gek~~~dL~~R  338 (439)
T KOG1498|consen  259 VSFCVLAPHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEGEKRWSDLKLR  338 (439)
T ss_pred             eeEEeecCCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHHHhhcccccccchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988899999998553333455699999999999


Q ss_pred             HHHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHHHHHHHHH
Q 014576          321 IIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLD  400 (422)
Q Consensus       321 viEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~~I~~l~~  400 (422)
                      |+|||+|++++|||||++.|+|+++|+|++++|.+||+||..|.++||||||+|||.|..++++++.||+|+.|+.+|++
T Consensus       339 IiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~K~~~~~LneW~~nve~L~~  418 (439)
T KOG1498|consen  339 IIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKVKDSNEILNEWASNVEKLLG  418 (439)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEEEecccHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHhhhhcc
Q 014576          401 LVEKSCHQIHKETMVHKTAL  420 (422)
Q Consensus       401 ~v~k~~~lI~ke~~~~~~~~  420 (422)
                      +++++||||+||+|||++..
T Consensus       419 ll~K~~HLI~KEemmhsi~~  438 (439)
T KOG1498|consen  419 LLEKVSHLIHKEEMMHSIQK  438 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999854

>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8 Back     alignment and domain information
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3107 LppC Putative lipoprotein [General function prediction only] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
4b4t_P445 Near-Atomic Resolution Structural Model Of The Yeas 7e-73
1ufm_A84 Solution Structure Of The Pci Domain Length = 84 3e-05
>pdb|4B4T|P Chain P, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  271 bits (692), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 246/417 (58%), Gaps = 25/417 (5%)
Query: 2   RLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQ 61
           R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  
Sbjct: 47  RQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106
Query: 62  TP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVE 119
           +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VE
Sbjct: 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE 166
Query: 120 TFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVV 179
           T+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F        K PK      
Sbjct: 167 TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF--------KNPKYES--- 215
Query: 180 EEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLRK 239
                       LK  YY L+++   H  +YLE+ +  + IY+   IK D A+W PVL  
Sbjct: 216 ------------LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263
Query: 240 ICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFE 299
           I ++LVL+P+  +Q+ L++    D NL ++ +   L+K   T E+++W  +  TY+    
Sbjct: 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323
Query: 300 NETNMLGGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDM 359
            +    GG       EDL++R+IEHN+ V+S+YYSRITL RL ELL L+  + E ++SD+
Sbjct: 324 EDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDL 383
Query: 360 VVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKLLDLVEKSCHQIHKETMVH 416
           V    + AK++RP  IV F+  K+S+ +LN W+ N+++LL+ +E   H I KE ++H
Sbjct: 384 VNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMH 440
>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain Length = 84 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 1e-29
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 1e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Length = 84 Back     alignment and structure
 Score =  109 bits (273), Expect = 1e-29
 Identities = 28/81 (34%), Positives = 42/81 (51%)

Query: 306 GGSLGAKAAEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL 365
           G S  +  +  L + +IEHN+L  SK Y+ IT + L  LL +   +AEK  S M+    +
Sbjct: 1   GSSGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRM 60

Query: 366 VAKIDRPQGIVCFQVAKDSND 386
              ID+  GIV F+  + S  
Sbjct: 61  NGFIDQIDGIVHFETREASGP 81
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 100.0
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 100.0
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 100.0
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.87
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 99.84
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 99.79
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 99.38
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 99.03
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 97.8
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 97.76
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 97.13
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 96.98
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 96.96
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 96.94
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 96.87
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 96.85
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 96.83
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 96.65
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 96.63
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 96.6
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 96.49
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.43
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 96.39
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 96.28
3u3w_A293 Transcriptional activator PLCR protein; ternary co 96.26
3u3w_A293 Transcriptional activator PLCR protein; ternary co 96.26
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 96.09
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 96.03
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 95.96
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 95.93
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 95.89
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 95.87
4eqf_A365 PEX5-related protein; accessory protein, tetratric 95.68
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 95.67
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 95.58
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 95.56
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 95.54
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 95.53
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 95.53
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 95.52
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 95.38
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 95.27
3q15_A378 PSP28, response regulator aspartate phosphatase H; 95.26
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 95.25
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 95.21
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 95.08
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 95.07
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 95.04
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 95.01
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 94.99
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 94.99
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 94.99
3q15_A378 PSP28, response regulator aspartate phosphatase H; 94.9
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 94.89
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 94.77
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 94.74
4eqf_A365 PEX5-related protein; accessory protein, tetratric 94.66
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 94.64
2gw1_A514 Mitochondrial precursor proteins import receptor; 94.57
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 94.57
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 94.56
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 94.44
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 94.44
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 94.32
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 94.32
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 94.19
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 94.17
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 94.13
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 94.09
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 93.88
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 93.82
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 93.78
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 93.71
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 93.61
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 93.6
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 93.46
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 93.45
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 93.34
3q49_B137 STIP1 homology and U box-containing protein 1; E3 93.26
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 93.12
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 93.06
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 93.01
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 92.97
2gw1_A514 Mitochondrial precursor proteins import receptor; 92.91
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 92.72
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 92.63
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 92.54
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 92.53
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 92.46
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 92.21
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 92.19
4i17_A228 Hypothetical protein; TPR repeats protein, structu 92.06
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 92.04
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 91.88
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 91.85
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 91.79
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 91.79
3u4t_A272 TPR repeat-containing protein; structural genomics 91.6
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 91.51
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 91.43
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 91.24
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 90.6
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 90.31
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 90.18
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 90.12
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 90.05
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 89.87
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 89.76
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 89.37
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 89.07
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 88.87
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 88.84
1sfx_A109 Conserved hypothetical protein AF2008; structural 88.42
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 88.26
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 87.71
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 87.48
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 87.01
4b4t_T274 26S proteasome regulatory subunit RPN12; hydrolase 86.78
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 86.22
1rz4_A226 Eukaryotic translation initiation factor 3 subuni; 86.15
3u4t_A272 TPR repeat-containing protein; structural genomics 86.07
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 85.82
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 85.73
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 85.04
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 85.04
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 84.98
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 84.34
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 84.33
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 83.52
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 83.46
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 83.29
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 83.13
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 82.96
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 82.81
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 82.79
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 82.3
3qww_A433 SET and MYND domain-containing protein 2; methyltr 82.17
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 82.09
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 81.79
1qbj_A81 Protein (double-stranded RNA specific adenosine D 81.73
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 81.49
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 81.25
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 81.09
3k9i_A117 BH0479 protein; putative protein binding protein, 80.93
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 80.78
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 80.75
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 80.5
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 80.04
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=5.8e-90  Score=711.86  Aligned_cols=398  Identities=40%  Similarity=0.676  Sum_probs=339.1

Q ss_pred             CccCCChhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhcCCCC--HHHHHHHHHHHHhh
Q 014576            1 MRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDQTPD--LDTRIELIKTLNSV   78 (422)
Q Consensus         1 ~R~~~D~~s~~~~~~~i~~~~~~~~~~~~l~~~i~~l~k~~~qlk~ai~~~v~~~~~~l~~~~~--~~~~~~li~tL~~~   78 (422)
                      ||+++|++||+|++.+|+++|++.++|+.|++++..|+|+|||+|+++++||+.+++|+++.|+  .++++.+++||+.+
T Consensus        46 ~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~v  125 (445)
T 4b4t_P           46 TRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV  125 (445)
T ss_dssp             HSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSS
T ss_pred             hhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999998885  56889999999999


Q ss_pred             hcCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHhcc
Q 014576           79 SAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISP  158 (422)
Q Consensus        79 ~~~ki~~E~era~l~~~La~i~e~~g~~~eAa~iL~~l~vEt~~~~~~~eK~e~~Le~~rL~l~~~D~~~a~~~~~K~~~  158 (422)
                      |+||||||+||+|++.+||++|+++|+|.+|+++|++|++||+++|++.+|++++|+|+|||++.+||++|+++++||++
T Consensus       126 te~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          126 TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCccccCCCCCCCcccccCCCCccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCCCCChhhHHHHHH
Q 014576          159 RVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIPYIKEDPAQWMPVLR  238 (422)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlklk~~~~~~~~~~~~~~y~ea~~~y~e~~~~~~~~~d~~~~~~~L~  238 (422)
                      +.+..++                       .++++++||.++++++.|+++|++||++|+++++++.+.+|+.++..+|+
T Consensus       206 ~~~~~~~-----------------------~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~  262 (445)
T 4b4t_P          206 KTFKNPK-----------------------YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLS  262 (445)
T ss_dssp             HHHHSSC-----------------------CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhcccCC-----------------------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence            8776432                       35899999999999999999999999999999999999889888999999


Q ss_pred             HHHHHHHhCCCChhhhHHhhhhhcccCCCCChhHHHHHHHhcccccccchhhHHHHHHHhhhhhhhcCCchhhhHHHHHH
Q 014576          239 KICWYLVLAPHDPMQSSLLNSTLEDKNLSEIPNFRLLLKQLVTMEVIQWTSLWNTYKDEFENETNMLGGSLGAKAAEDLR  318 (422)
Q Consensus       239 ~~v~~~ILa~~~~~rs~ll~~~~~d~~~~~ip~~~~L~k~f~~~eli~~~~~~~~y~~~l~~~~~~~~d~~~~~~~~~L~  318 (422)
                      ++|+|+||+|++|++++++++++.|++++++|.|+.|+++|.+++|++|+.+...|+..+.++..++.++.+..||+.|+
T Consensus       263 ~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~  342 (445)
T 4b4t_P          263 HIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQ  342 (445)
T ss_dssp             HHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998899888875554555566788999999


Q ss_pred             HHHHHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCChHHHHHHHHHHHHHH
Q 014576          319 QRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKDSNDILNSWAMNLEKL  398 (422)
Q Consensus       319 ~~viEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~~~~~l~~W~~~I~~l  398 (422)
                      ++++||||+++++||++|+|++||++||+|++++|..+++||.+|+|+|+||||+|+|+|++++++++.|++|+.+|++|
T Consensus       343 ~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l  422 (445)
T 4b4t_P          343 KRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDEL  422 (445)
T ss_dssp             HHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC--------------------
T ss_pred             HHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHhhhhccc
Q 014576          399 LDLVEKSCHQIHKETMVHKTALK  421 (422)
Q Consensus       399 ~~~v~k~~~lI~ke~~~~~~~~~  421 (422)
                      |+.|++++|+|+||+|||++++|
T Consensus       423 ~~~v~k~~~lI~kE~m~~~~~~k  445 (445)
T 4b4t_P          423 LEHIETIGHLITKEEIMHGLQAK  445 (445)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999875
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1ufma_84 a.4.5.47 (A:) COP9 signalosome complex subunit 4, 7e-24
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 84 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.5 bits (230), Expect = 7e-24
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 307 GSLGAKAAED-LRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKAL 365
           GS G+      L + +IEHN+L  SK Y+ IT + L  LL +   +AEK  S M+    +
Sbjct: 1   GSSGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRM 60

Query: 366 VAKIDRPQGIVCFQVAKDSN 385
              ID+  GIV F+  + S 
Sbjct: 61  NGFIDQIDGIVHFETREASG 80

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 99.8
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 96.49
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 95.79
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 93.05
d1hz4a_366 Transcription factor MalT domain III {Escherichia 92.86
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 92.39
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 91.86
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 91.45
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 91.13
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 91.1
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 90.63
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 90.59
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 90.27
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 90.09
d1dpua_69 C-terminal domain of RPA32 {Human (Homo sapiens) [ 89.62
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 89.26
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 88.9
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 88.4
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 88.16
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 87.44
d1z6ra170 Mlc protein N-terminal domain {Escherichia coli [T 85.72
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 84.98
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 84.67
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 82.54
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 82.41
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 82.3
d2fbha1137 Transcriptional regulator PA3341 {Pseudomonas aeru 82.19
d1hz4a_366 Transcription factor MalT domain III {Escherichia 81.89
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 81.36
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 80.16
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2e-20  Score=146.29  Aligned_cols=70  Identities=36%  Similarity=0.518  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccHHHHHHHhCCCHHHHHHHHHHHHhcCeEEEEeccCCcEEEEccCCC
Q 014576          314 AEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLSIQEAEKHLSDMVVSKALVAKIDRPQGIVCFQVAKD  383 (422)
Q Consensus       314 ~~~L~~~viEhNi~~isk~Ys~Isl~~La~ll~ls~~e~E~~ls~mI~~~~i~akIDq~~giV~F~~~~~  383 (422)
                      ++.|+++|+||||+++++||++|+|++||++|+++++++|..|++||.+|+|+|+|||++|+|+|+.++.
T Consensus         9 ~t~L~~~i~Ehni~~is~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e~   78 (84)
T d1ufma_           9 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA   78 (84)
T ss_dssp             SCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred             hHHHHHHHHHHHHHHHHHhhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCCCc
Confidence            3668999999999999999999999999999999999999999999999999999999999999998764
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure