Citrus Sinensis ID: 014578

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
ccHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccHHcccccccccHHHHHHHHHHHcccccccccccccEEEccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccccEEEccccccccccccccEEEEEEEcccccccEEEEEccccccccccccEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccEEEcccccEEEcccccEEEEEccccccccccccccEEEEEEEEccccEEEEEEcccccHHHHHHHHHHHcccccccc
ccHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEccEEcccccccccEEEEEEEEccccccEEEEcccccHHccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEccccccccccccccEEEEEEEEEEEccccccccEEEEEEcccccHHcccccccccccccccccccccccccccccccccHHHHccccccHccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MALKNIVKEMRDGIgnisrrgserrcsengkhnmrrrgrsyiapegssssskIIVEqsqwanmppELLLDIIQRIEasqtswparRDVVACASVCKSWRAVTKEIIRtpeqcgllsfpvslkqpgprdapiqcyirrerptgtyrlylglspalsgDMSKLLLAARKIRKATSTDFLISLvgddfsrtsntyvgklrsnflgtkftiydsqppcdtaihsnsrsqrkifpkqvslkgsssnysVATISYELNVlrtrgprrmqctmhsipisaiqeggtaptpieftncceeqipsspspvskgkkplvefsstslsgplesfgsagdplilknkaprWHEQLQCWCLNFKGRVTVASVKNFQLVaaaepnqnvsvAEQERVILQFGkigkdiftmdyrypLSALQAFAICLssfdtkpace
malknivkemrdgignisrrgserrcsengkhnmrrrgrsyiapegsssssKIIVEQSQWANMPPELLLDIIQRIEAsqtswparrDVVACASVCKSWRAVTKEIIrtpeqcgllsfpvslkqpgprdaPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKatstdflislvgddfsrtsntyvGKLRSNFLGTKFTIYDSQPPCDTAihsnsrsqrkifpkqvslkgsssnysvATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPsspspvskgkkPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAaaepnqnvsvaeQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGsssssKIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIpsspspvskgkkpLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
******************************************************V**SQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQ******************************YSVATISYELNVLRTRGPRRMQCTMHSIPISAIQE******PIEFTNC***************************************PLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSF*******
**LKNI**EMR***************************************************MPPELLLDIIQRI*************VACASVCKSWRAVTKEII**********FPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQP*********************************TISYELNVLRTRG****************************T*****************************************PLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLV***********AEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
MALKNIVKEMRDGIGNIS***************MRRRGRSYI*********KIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQ**************LVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
***********DGIGNISRRGSERRCS************************KIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQP*********************SLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEF***************************************AGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAE********EQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPAC*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
Q6Z2G9428 Tubby-like F-box protein yes no 0.992 0.978 0.619 1e-150
Q0WPY0413 Tubby-like F-box protein yes no 0.895 0.915 0.634 1e-145
Q8GVE5394 Tubby-like F-box protein no no 0.924 0.989 0.578 1e-129
Q2QXB2445 Tubby-like F-box protein no no 0.981 0.930 0.507 1e-129
Q10LG8403 Tubby-like F-box protein no no 0.954 1.0 0.561 1e-128
Q8H485406 Tubby-like F-box protein no no 0.962 1.0 0.545 1e-126
Q9FRH7445 Tubby-like F-box protein no no 0.973 0.923 0.519 1e-124
Q8VY21406 Tubby-like F-box protein no no 0.962 1.0 0.545 1e-121
Q75HX5445 Tubby-like F-box protein no no 0.995 0.943 0.489 1e-119
Q7XSV4462 Tubby-like F-box protein no no 0.983 0.898 0.479 1e-119
>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1 Back     alignment and function desciption
 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/431 (61%), Positives = 331/431 (76%), Gaps = 12/431 (2%)

Query: 1   MALKNIVKE---MRDGIGNISRRGSERRCSENGKHNMRR-----RGRSYIAPEGSSSSSK 52
           M+LK+IV+E   MRDGIG++SRR ++ R       +          +     +      +
Sbjct: 1   MSLKSIVRELREMRDGIGSMSRRAADGRAGGGRGGSRHSWPVLWSEQQQPPQQQQLQRQE 60

Query: 53  IIVEQSQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQC 112
              +Q +WAN+PPELLLD+IQR+EAS+ +WPARR VVACA+VC+SWR VTKE+++T E+C
Sbjct: 61  HQQQQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEEC 120

Query: 113 GLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKAT 172
           G ++FP+SLKQPGPR+ P+QC++RR+R T TY LYLGLSP+L G+  KLLLAARKIR+AT
Sbjct: 121 GRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRAT 180

Query: 173 STDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQ 232
            T F+ISLV +DFS +S+TYVGKL+ NFLGTKFTI+DSQPPCD  +  N+R  ++ F KQ
Sbjct: 181 RTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKRHF-KQ 239

Query: 233 VSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEE 292
           VS +    NY+VAT+SYEL VLR RGPRRMQCTMHSIP   IQEGG APTP    +  +E
Sbjct: 240 VSPRLPLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDE 299

Query: 293 QIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGD-PLILKNKAPRWHEQLQCWCLNFK 351
           Q+P+  +  SKGK+P +EFSSTSLS  L       + PL+LKNKAPRWHEQLQCWCLNF+
Sbjct: 300 QVPALST--SKGKEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWCLNFR 357

Query: 352 GRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAIC 411
           GRVTVASVKNFQLVA+ +P+  +  AEQE+VILQFGKIGKDIFTMDYRYPLSA QAFAIC
Sbjct: 358 GRVTVASVKNFQLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAIC 417

Query: 412 LSSFDTKPACE 422
           L+SFDTKPACE
Sbjct: 418 LTSFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q0WPY0|TLP6_ARATH Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8GVE5|TLP2_ARATH Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1 Back     alignment and function description
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
225458249416 PREDICTED: tubby-like F-box protein 5 is 0.978 0.992 0.741 0.0
255538682413 phosphoric diester hydrolase, putative [ 0.966 0.987 0.721 1e-175
225430726413 PREDICTED: tubby-like F-box protein 5-li 0.971 0.992 0.72 1e-173
224062119416 f-box family protein [Populus trichocarp 0.978 0.992 0.710 1e-170
224085682416 f-box family protein [Populus trichocarp 0.978 0.992 0.703 1e-169
356552095423 PREDICTED: tubby-like F-box protein 5-li 0.981 0.978 0.693 1e-167
302142510367 unnamed protein product [Vitis vinifera] 0.862 0.991 0.691 1e-166
356564284436 PREDICTED: tubby-like F-box protein 5-li 0.983 0.951 0.670 1e-162
449460253382 PREDICTED: tubby-like F-box protein 5-li 0.898 0.992 0.727 1e-162
356538200414 PREDICTED: tubby-like F-box protein 5-li 0.969 0.987 0.679 1e-160
>gi|225458249|ref|XP_002282152.1| PREDICTED: tubby-like F-box protein 5 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/425 (74%), Positives = 356/425 (83%), Gaps = 12/425 (2%)

Query: 1   MALKNIVKE---MRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQ 57
           M  K+IV+E   MRD IGN SRR +E      GKH   RRGRS+IAPEGS SSS +  +Q
Sbjct: 1   MHFKSIVRELRDMRDSIGNSSRRRAE------GKHT-NRRGRSHIAPEGSPSSSALFQQQ 53

Query: 58  SQWANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSF 117
           SQWANMPPELLLDIIQR+EA++ SWPARRDVV+C SVC+SWR +TKEI++TPEQCG L+F
Sbjct: 54  SQWANMPPELLLDIIQRVEAAEASWPARRDVVSCGSVCRSWRDITKEIVKTPEQCGCLTF 113

Query: 118 PVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFL 177
           P+SLKQPGPR++ IQC+I+RER T T+RLYLGLSPALSGD SKLLLAARKIR+ATST+F+
Sbjct: 114 PISLKQPGPRESQIQCFIKRERATSTFRLYLGLSPALSGDASKLLLAARKIRRATSTEFV 173

Query: 178 ISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKG 237
           ISL+GDDFSR +N YVGKL+SNFLGTKFTIYDSQPP D A+ SN +S  ++  KQ S + 
Sbjct: 174 ISLLGDDFSRATNAYVGKLKSNFLGTKFTIYDSQPPHDPAVQSNCQSNGRLHSKQGSTRS 233

Query: 238 SSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSS 297
            S NY+VATISYELNVLRTRGPRRM CTMH IPISAIQEGGTAPTP+ F  C ++Q P S
Sbjct: 234 PSGNYNVATISYELNVLRTRGPRRMHCTMHWIPISAIQEGGTAPTPMTFAKCQKDQFPQS 293

Query: 298 PSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA 357
             P  KGK PL+EFSS SL+   ES     +PL+LKNKAPRWHEQLQCWCLNFKGRVTVA
Sbjct: 294 ADP--KGKNPLIEFSSNSLAETPESIQDTRNPLVLKNKAPRWHEQLQCWCLNFKGRVTVA 351

Query: 358 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDT 417
           SVKNFQLVAA EP QNVSVAEQE+VILQFGKIGKDIFTMDYRYPLSA QAFAICLSSFDT
Sbjct: 352 SVKNFQLVAAVEPCQNVSVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDT 411

Query: 418 KPACE 422
           KPACE
Sbjct: 412 KPACE 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538682|ref|XP_002510406.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223551107|gb|EEF52593.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225430726|ref|XP_002265804.1| PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224062119|ref|XP_002300764.1| f-box family protein [Populus trichocarpa] gi|222842490|gb|EEE80037.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224085682|ref|XP_002307662.1| f-box family protein [Populus trichocarpa] gi|222857111|gb|EEE94658.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356552095|ref|XP_003544406.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|302142510|emb|CBI19713.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356564284|ref|XP_003550385.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|449460253|ref|XP_004147860.1| PREDICTED: tubby-like F-box protein 5-like [Cucumis sativus] gi|449476828|ref|XP_004154845.1| PREDICTED: tubby-like F-box protein 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538200|ref|XP_003537592.1| PREDICTED: tubby-like F-box protein 5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.872 0.826 0.489 1.8e-133
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.642 0.656 0.607 1.4e-87
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.658 0.610 0.503 1.9e-110
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.971 0.955 0.473 2.3e-101
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.817 0.907 0.519 2.7e-91
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.582 0.649 0.450 2.4e-89
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.604 0.647 0.555 3.6e-73
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.587 0.637 0.525 1e-61
RGD|1310551486 Tulp2 "tubby-like protein 2" [ 0.199 0.172 0.569 1.4e-34
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.194 0.162 0.538 2e-34
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 933 (333.5 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
 Identities = 188/384 (48%), Positives = 259/384 (67%)

Query:     1 MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIA-PEGXXXXXKIIVEQSQ 59
             M+ + IV+++RDG G++SRR  + R S    H  + +G S+            +IV+ S+
Sbjct:     1 MSFRGIVQDLRDGFGSLSRRSFDFRLSS--LHKGKAQGSSFREYSSSRDLLSPVIVQTSR 58

Query:    60 WANMPPELLLDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPV 119
             WAN+PPELL D+I+R+E S+++WPAR+ VVACASVC+SWRA+ +EI+  PE CG L+FPV
Sbjct:    59 WANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPV 118

Query:   120 SLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLIS 179
             SLKQPGPRDA IQC+I+R++   T+ L+L LSPAL  +  K LL+A++ R+ T T+++IS
Sbjct:   119 SLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIIS 178

Query:   180 LVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDT---AIHSNSRSQRKIFPKQVSLK 236
             +  D+ SR+SN+Y+GKLRSNFLGTKF +YD+QPP +T   A+ ++  S+ +   ++VS K
Sbjct:   179 MDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPK 238

Query:   237 GSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPT--------PIEFTN 288
               S +Y++A I+YELNVL TRGPRRM C M+SIPIS+++ GG+ P         P    +
Sbjct:   239 VPSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDD 298

Query:   289 CCEEQIXXXXXXXXXXXXXLVE--FSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCW 346
                  I                  FS   +S       ++  PLILKNK PRWHEQLQCW
Sbjct:   299 SFRSNISFSKSSFDHRSLDFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCW 358

Query:   347 CLNFKGRVTVASVKNFQLVAAAEP 370
             CLNF+GRVTVASVKNFQLVAA +P
Sbjct:   359 CLNFRGRVTVASVKNFQLVAARQP 382
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0005829 "cytosol" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1310551 Tulp2 "tubby-like protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z2G9TLP5_ORYSJNo assigned EC number0.61940.99280.9789yesno
Q0WPY0TLP6_ARATHNo assigned EC number0.63420.89570.9152yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
pfam01167243 pfam01167, Tub, Tub family 1e-106
pfam1293747 pfam12937, F-box-like, F-box-like 4e-05
pfam0064648 pfam00646, F-box, F-box domain 0.004
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  312 bits (802), Expect = e-106
 Identities = 118/295 (40%), Positives = 160/295 (54%), Gaps = 54/295 (18%)

Query: 124 PGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGD--MSKLLLAARKIRKATSTDFLISLV 181
           P PR   +QC I R++    Y L+      L  +    K LLAARK +++ ++++LISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 182 GDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSN 241
             D SR+ + Y+GKLRSNFLGTKFT++D+      A             + V+ K +S  
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKA-------------RLVTPKVASGR 107

Query: 242 YSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPV 301
             +A + YE NVL  RGPR+M   M  IP S                   E++P  P   
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSH------------------ERVPIQPLND 149

Query: 302 SKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKN 361
            +    L  + + +    L           L NKAPRW++QLQ + LNF GRVT ASVKN
Sbjct: 150 QESL--LSRWQNKNKESLLV----------LHNKAPRWNDQLQSYVLNFHGRVTQASVKN 197

Query: 362 FQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFD 416
           FQ+V A++P         + ++LQFG++ KD+FTMDYRYPLSA QAFAICLSSFD
Sbjct: 198 FQIVHASDP---------DYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.75
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 98.15
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.76
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.64
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.37
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.2
KOG2997366 consensus F-box protein FBX9 [General function pre 88.8
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-127  Score=951.69  Aligned_cols=354  Identities=50%  Similarity=0.800  Sum_probs=306.0

Q ss_pred             CchhhHHHHhccccccccccccccccccCCCcccccCCccccCCCCCCCCcccccccCccCCCCHHHHHHHHHHHHhcCC
Q 014578            1 MALKNIVKEMRDGIGNISRRGSERRCSENGKHNMRRRGRSYIAPEGSSSSSKIIVEQSQWANMPPELLLDIIQRIEASQT   80 (422)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~lp~ell~~i~~r~e~se~   80 (422)
                      |+++++++++++..      +++++..+      +|++. +...++....  .....+.|++||||||+|+|+|+|++|+
T Consensus         1 ~~~~~~~~~~~~~~------~~~~~~~~------~~~~~-~~~~~~~~~~--s~~~~~~~~~l~~~~L~d~~~r~eese~   65 (355)
T KOG2502|consen    1 MGEDGPVRDPEDKS------SFRAPQGS------GTKGP-EDKSEDSGFP--SPSDQSLWAALPPELLSDVLKRDEESED   65 (355)
T ss_pred             CCccCccCCCCccc------chhccccc------ccccC-CCccCCcCCc--cccccchhhcCCHhHHHHHhhhcccccc
Confidence            78899999998776      55544332      12211 1112211111  1112289999999999999999999999


Q ss_pred             CCCCccceeeccccChhHHHHhHHHhcCccccCcccccccccCCCCCCCceEEEEEEecCCceEEEEeccCCCcCC-CCC
Q 014578           81 SWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSG-DMS  159 (422)
Q Consensus        81 ~wp~r~~vvaca~vc~~wr~~~~eiv~~pe~~gk~tfp~sLkqPgPrd~~iQC~I~RdK~~~tY~LYL~l~~~~~~-e~g  159 (422)
                      .||+|++||+||+||+.||++++|||++||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.++++. |++
T Consensus        66 ~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~  145 (355)
T KOG2502|consen   66 TWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNK  145 (355)
T ss_pred             ccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887654 678


Q ss_pred             eeEEeeeecccCCceeEEEEccCCCCcCCCCceeeeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCC
Q 014578          160 KLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSS  239 (422)
Q Consensus       160 KfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVGKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~  239 (422)
                      ||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|..          .+|+++      ++|+
T Consensus       146 kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~----------~~r~~~------~~~~  209 (355)
T KOG2502|consen  146 KFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN----------PSRRFN------KVPS  209 (355)
T ss_pred             eeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC----------cccccc------cCCc
Confidence            999999999999999999999999999999999999999999999999999732          234444      5899


Q ss_pred             CceeEEEEEEeecccCCCCCeeeEEeeccCcchhhcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 014578          240 SNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGP  319 (422)
Q Consensus       240 ~~~ela~VsYE~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~s~~~~~~  319 (422)
                      ++|+||+|+||+||||+||||||+|+||+||.++  ++|++|.|++..+..     .+    .+.               
T Consensus       210 ~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l----~r~---------------  263 (355)
T KOG2502|consen  210 GRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL----FRS---------------  263 (355)
T ss_pred             ccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh----hhc---------------
Confidence            9999999999999999999999999999999887  899999886542211     01    010               


Q ss_pred             CCCCCCCCCceEeecCCCcccccccceEeccCCeeeccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEcc
Q 014578          320 LESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYR  399 (422)
Q Consensus       320 ~~~~~~~~~~l~L~nK~P~w~e~~q~y~LnF~GRvt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~  399 (422)
                        .+..++++++|+||.|+|||++||||||||||||+||||||||||.         .++++|||||||||||+|||||+
T Consensus       264 --~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------~~p~~iiLQFGrV~kD~FTmDYr  332 (355)
T KOG2502|consen  264 --QNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------LDPEYIILQFGRVGKDVFTMDYR  332 (355)
T ss_pred             --cccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------CCCCEEEEEeeeeccceeeeccc
Confidence              1123689999999999999999999999999999999999999998         56799999999999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCCcccCC
Q 014578          400 YPLSALQAFAICLSSFDTKPACE  422 (422)
Q Consensus       400 yPlS~~QAFaI~LssfdtKlACE  422 (422)
                      ||||+||||||||||||+|||||
T Consensus       333 YPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  333 YPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             CccHHHHHHHHHHHhccccccCC
Confidence            99999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 7e-40
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 1e-39
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 2e-39
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 3e-39
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 3e-37
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  161 bits (407), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 155/305 (50%), Gaps = 60/305 (19%)
Query: 123 QPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSK--LLLAARKIRKATSTDFLISL 180
           +P P+   I+C I R++      ++      L  +  K   LLA RK +K+ ++++LIS+
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 181 VGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVS---LKG 237
              D SR  ++Y+GKLRSN +GTKFT+YD+                 + P++ S   L+ 
Sbjct: 84  DPTDLSRGGDSYIGKLRSNLMGTKFTVYDN----------------GVNPQKASSSTLES 127
Query: 238 SSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIXXX 297
            +    +A + YE NVL  +GPR+M         S I  G          N   E++   
Sbjct: 128 GTLRQELAAVCYETNVLGFKGPRKM---------SVIVPG---------MNMVHERVSIR 169
Query: 298 XXXXXXXXXXLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVA 357
                     L  + + +    +E          L+NK P W++  Q + LNF GRVT A
Sbjct: 170 PRNEHETL--LARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQA 217
Query: 358 SVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDT 417
           SVKNFQ++   +P         + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+
Sbjct: 218 SVKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 268
Query: 418 KPACE 422
           K ACE
Sbjct: 269 KLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 6e-91
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 4e-89
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 2e-04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 2e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  275 bits (703), Expect = 6e-91
 Identities = 100/302 (33%), Positives = 149/302 (49%), Gaps = 54/302 (17%)

Query: 121 LKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISL 180
           + +P P+   ++C + R++      +Y      L  +    LLA RK +++ + ++LIS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 181 VGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSS 240
              + SR    ++GKLRSN LG +FT++D+                    +  S   +S 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 133

Query: 241 NYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSPSP 300
              +A + YE NVL  RGPRRM   +  +                      E++P  P  
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSAE------------------NERVPIRPRN 175

Query: 301 VSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVK 360
            S G   LV + + +L             + L NK P W++    + LNF+GRVT ASVK
Sbjct: 176 ASDG--LLVRWQNKTLE----------SLIELHNKPPVWNDDSGSYTLNFQGRVTQASVK 223

Query: 361 NFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPA 420
           NFQ+V A +P+          ++LQFG++ +D FT+DYRYPL ALQAFAI LSSFD K A
Sbjct: 224 NFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLA 274

Query: 421 CE 422
           CE
Sbjct: 275 CE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.1
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.91
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.75
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.56
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.55
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.45
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.56
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 91.76
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.56
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=5.8e-89  Score=665.82  Aligned_cols=243  Identities=40%  Similarity=0.676  Sum_probs=184.3

Q ss_pred             cccCCCCCCCceEEEEEEecCCc------eEEEEeccCCCcCCCCCeeEEeeeecccCCceeEEEEccCCCCcCCCCcee
Q 014578          120 SLKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYV  193 (422)
Q Consensus       120 sLkqPgPrd~~iQC~I~RdK~~~------tY~LYL~l~~~~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yV  193 (422)
                      .|+||+|+|++|||+|+|||+|+      +|||||+      .++++|||||||+|+++++||+||+|++||||++++||
T Consensus        28 fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~------~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yv  101 (276)
T 2fim_A           28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI  101 (276)
T ss_dssp             GGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC------SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred             HhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe------CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEE
Confidence            49999999999999999999984      9999994      36789999999999999999999999999999999999


Q ss_pred             eeeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccCcchh
Q 014578          194 GKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISA  273 (422)
Q Consensus       194 GKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYE~NVLg~rGPRrM~~im~~IP~s~  273 (422)
                      |||||||+||+|+|||+|++.+.               ..+|.++.+++|||+|+||+||||++|||+|+|+||.+   .
T Consensus       102 GKLrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~---~  163 (276)
T 2fim_A          102 GKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S  163 (276)
T ss_dssp             EEEEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECB---C
T ss_pred             EEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c
Confidence            99999999999999999954321               13566778899999999999999999999999998653   1


Q ss_pred             hcCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeecCCCcccccccceEeccCCe
Q 014578          274 IQEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGR  353 (422)
Q Consensus       274 i~~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~s~~~~~~~~~~~~~~~~l~L~nK~P~w~e~~q~y~LnF~GR  353 (422)
                       +.|+..|.+            +..    .......++.          +...+++++|+||+|+|||++|||||||+||
T Consensus       164 -~~~~~~~~~------------p~~----~~~~ll~~~~----------~~~~~~~~~l~nK~P~wne~~~~y~LnF~GR  216 (276)
T 2fim_A          164 -AENERVPIR------------PRN----ASDGLLVRWQ----------NKTLESLIELHNKPPVWNDDSGSYTLNFQGR  216 (276)
T ss_dssp             -TTSCBCCCC------------CSS----TTCSHHHHHH----------HTCCTTEEEEEECCCEEETTTTEEECCCTTC
T ss_pred             -cCCCEeccc------------CCC----cccccchhhh----------ccCCcceEeeeccCCcccccCCEEEEecCCe
Confidence             223333221            110    0000111111          2245789999999999999999999999999


Q ss_pred             eeccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014578          354 VTVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE  422 (422)
Q Consensus       354 vt~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE  422 (422)
                      ||+|||||||||++         +|+++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       217 Vt~aSvKNFQLv~~---------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          217 VTQASVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CCSCCTTCEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             eeccccceEEEEec---------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            99999999999998         6778999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 3e-95
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 3e-05
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  284 bits (728), Expect = 3e-95
 Identities = 98/304 (32%), Positives = 152/304 (50%), Gaps = 54/304 (17%)

Query: 121 LKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPALSGDMSK--LLLAARKIRKATSTDFLI 178
             +P P+   I+C I R++      ++      L  +  K   LLA RK +K+ ++++LI
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 179 SLVGDDFSRTSNTYVGKLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGS 238
           S+   D SR  ++Y+GKLRSN +GTKFT+YD+      A                +L+  
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKA-------------SSSTLESG 120

Query: 239 SSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAIQEGGTAPTPIEFTNCCEEQIPSSP 298
           +    +A + YE NVL  +GPR+M   +  + +                           
Sbjct: 121 TLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV--------------------HERVCI 160

Query: 299 SPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRVTVAS 358
            P ++ +  L  + + +    +E          L+NK P W++  Q + LNF GRVT AS
Sbjct: 161 RPRNEHETLLARWQNKNTESIIE----------LQNKTPVWNDDTQSYVLNFHGRVTQAS 210

Query: 359 VKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTK 418
           VKNFQ++   +P         + +++QFG++ +D+FTMDY YPL ALQAFAI LSSFD+K
Sbjct: 211 VKNFQIIHGNDP---------DYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSK 261

Query: 419 PACE 422
            ACE
Sbjct: 262 LACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.01
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.98
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.74
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.53
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-84  Score=627.73  Aligned_cols=246  Identities=40%  Similarity=0.678  Sum_probs=206.0

Q ss_pred             ccCCCCCCCceEEEEEEecCCc------eEEEEeccCCCcCCCCCeeEEeeeecccCCceeEEEEccCCCCcCCCCceee
Q 014578          121 LKQPGPRDAPIQCYIRRERPTG------TYRLYLGLSPALSGDMSKLLLAARKIRKATSTDFLISLVGDDFSRTSNTYVG  194 (422)
Q Consensus       121 LkqPgPrd~~iQC~I~RdK~~~------tY~LYL~l~~~~~~e~gKfLLAARKrrr~~tSnYiISld~~dlSr~s~~yVG  194 (422)
                      |.||||+|++|||+|+|||+++      +|+|||+.+.    ++++|||||||+|+++++|||||+|++|+||++++|||
T Consensus        14 l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~----gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yvG   89 (265)
T d1c8za_          14 ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRED----GKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIG   89 (265)
T ss_dssp             HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECTT----SCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCSE
T ss_pred             hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccCC----CceeEEEEEeeecCCCcceEEEEccHHHhcccccceeE
Confidence            9999999999999999999876      6999997532    45679999999999999999999999999999999999


Q ss_pred             eeeeceeecEEEEecCCCCCCCCcccCCcccccccccccccCCCCCceeEEEEEEeecccCCCCCeeeEEeeccCcchhh
Q 014578          195 KLRSNFLGTKFTIYDSQPPCDTAIHSNSRSQRKIFPKQVSLKGSSSNYSVATISYELNVLRTRGPRRMQCTMHSIPISAI  274 (422)
Q Consensus       195 KLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~VsYE~NVLg~rGPRrM~~im~~IP~s~i  274 (422)
                      ||||||+||+|+|||+|++++.++.             .++.....++|||+|+||+||||+||||+|+|+||.|+..  
T Consensus        90 KlrSNflGTkF~iYD~G~~p~~~~~-------------~~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~--  154 (265)
T d1c8za_          90 KLRSNLMGTKFTVYDNGVNPQKASS-------------STLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV--  154 (265)
T ss_dssp             EEEECTTSSEEEEECSSBCGGGCCT-------------TGGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTT--
T ss_pred             EeeccccCCEEEEecCCCCcccccc-------------cccccCccceeeeEEEEeeehhccCCCceeEEEecCCCcc--
Confidence            9999999999999999976554332             1122334578999999999999999999999999877531  


Q ss_pred             cCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceEeecCCCcccccccceEeccCCee
Q 014578          275 QEGGTAPTPIEFTNCCEEQIPSSPSPVSKGKKPLVEFSSTSLSGPLESFGSAGDPLILKNKAPRWHEQLQCWCLNFKGRV  354 (422)
Q Consensus       275 ~~gg~~p~q~~~~~~~~e~f~~~~~~~~k~k~~~~~~~s~~~~~~~~~~~~~~~~l~L~nK~P~w~e~~q~y~LnF~GRv  354 (422)
                             ++..       .+.+.    ........++          .+...+++++|+||+|+||++++||+|||+|||
T Consensus       155 -------~~~~-------~~~p~----~~~~~~~~~~----------~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv  206 (265)
T d1c8za_         155 -------HERV-------CIRPR----NEHETLLARW----------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRV  206 (265)
T ss_dssp             -------SCBC-------CCCCS----STTSSHHHHH----------HTTCCSSEEEEEECCCEEETTTTEEEEEETTEE
T ss_pred             -------cccc-------ccCCC----CcchhhhHHh----------hccCcccceEEecCCCeeeccCCEEEeccCCEE
Confidence                   1100       11111    0111111111          123567899999999999999999999999999


Q ss_pred             eccccceeEEEeccCCCCCCCcccCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014578          355 TVASVKNFQLVAAAEPNQNVSVAEQERVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKPACE  422 (422)
Q Consensus       355 t~aSVKNFQLv~~~~~s~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE  422 (422)
                      ++|||||||||++         ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       207 ~~~SvKNFql~~~---------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         207 TQASVKNFQIIHG---------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             EECBTTEEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             eccccceEEEEeC---------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            9999999999987         6778999999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure