Citrus Sinensis ID: 014583

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKLV
ccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccEEcccccccccccccccEEEEEEccEEEEcccEEEEcccccccEEEEEEEEcccccEEEEEEcccccccccccccccEEEEEEccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccc
ccEccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEcccccEEEcccHHcccccccccEEEEEcccEccHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHccccHHHHHHHHHHHHccc
mtihsskhqddvdknarssyfnlpaldisvafpqatpaskfppcasdyyqfddLLTSEEQAVRMKVRECMEKEIAPIMAEYwekaefpfhvipklgALRVaggtikgygcpghsvTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCgseeqkqkyLPSLAQLNTIACWaltepaygsdasalnttatkveggwilegqkrwignstFADVLVIFARNTttnqingylvkkdapgltvtkIENKIglrivqngdillkkvfvpdedrlpgvnsfqdTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERkqfgaplaAFQINQQKLVQMLGNIQAMILVGWRLCKLyekgamtpghaslgKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKLV
mtihsskhqddvdknARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNtttnqingylvkkdapgltVTKIenkiglrivqngdILLKKVFVpdedrlpgvnsfqdtskVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKLV
MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKLV
*******************YFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLK**
********************************************ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL*
*************KNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKLV
**************NARSSYFNLPALDISVAFPQA***SKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKL*
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MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYLKLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
Q96329436 Acyl-coenzyme A oxidase 4 yes no 0.943 0.912 0.811 0.0
Q20772409 Probable glutaryl-CoA deh yes no 0.829 0.855 0.334 5e-56
Q60759438 Glutaryl-CoA dehydrogenas yes no 0.862 0.831 0.339 2e-49
Q8HXX8438 Glutaryl-CoA dehydrogenas N/A no 0.824 0.794 0.347 3e-49
Q2KHZ9438 Glutaryl-CoA dehydrogenas yes no 0.824 0.794 0.344 3e-49
Q92947438 Glutaryl-CoA dehydrogenas yes no 0.824 0.794 0.350 5e-49
P81140408 Glutaryl-CoA dehydrogenas no no 0.824 0.852 0.349 7e-48
Q54R47420 Glutaryl-CoA dehydrogenas no no 0.855 0.859 0.318 1e-46
P45857379 Acyl-CoA dehydrogenase OS yes no 0.862 0.960 0.328 4e-44
P52042379 Acyl-CoA dehydrogenase, s yes no 0.815 0.907 0.315 8e-40
>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1 Back     alignment and function desciption
 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/398 (81%), Positives = 357/398 (89%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300

Query: 301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360
           G+YDMCHRYLKERKQFGAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG 
Sbjct: 301 GIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQ 360

Query: 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKVI 398
           ASLGK+WI+++ARET +LGRELLGGNGIL+DFLVAK  
Sbjct: 361 ASLGKAWISSKARETASLGRELLGGNGILADFLVAKAF 398
Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1 Back     alignment and function description
>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2 Back     alignment and function description
>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1 Back     alignment and function description
>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1 Back     alignment and function description
>sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1 Back     alignment and function description
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 Back     alignment and function description
>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
402715756437 acyl-CoA oxidase 4 [Prunus persica] 0.921 0.890 0.876 0.0
224139128437 predicted protein [Populus trichocarpa] 0.928 0.897 0.867 0.0
359481157439 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.938 0.902 0.871 0.0
255582668440 acyl-CoA dehydrogenase, putative [Ricinu 0.938 0.9 0.851 0.0
359481155446 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.931 0.881 0.870 0.0
351722526400 acyl-CoA oxidase [Glycine max] gi|156972 0.938 0.99 0.853 0.0
356521028421 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.895 0.897 0.878 0.0
47118098440 putative short-chain acyl-CoA oxidase [T 0.928 0.890 0.839 0.0
224087764436 predicted protein [Populus trichocarpa] 0.926 0.896 0.831 0.0
297819888436 acyl-CoA oxidase 4 [Arabidopsis lyrata s 0.938 0.908 0.818 0.0
>gi|402715756|gb|AFQ93696.1| acyl-CoA oxidase 4 [Prunus persica] Back     alignment and taxonomy information
 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/389 (87%), Positives = 369/389 (94%)

Query: 8   HQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVR 67
           +QDDV+KN R++YFN PA+D+S+AFPQATPAS FPPC SDYYQFDDLLT EEQAVR++VR
Sbjct: 6   NQDDVNKNERTNYFNSPAMDVSLAFPQATPASTFPPCTSDYYQFDDLLTPEEQAVRLRVR 65

Query: 68  ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR 127
           +C+EK++APIMAEYWEKAEFPFHVIPK GALR+AGGTIKGYGCPG S+T  A A AEIAR
Sbjct: 66  QCLEKDVAPIMAEYWEKAEFPFHVIPKFGALRIAGGTIKGYGCPGLSITANAFATAEIAR 125

Query: 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN 187
           VDASCSTF LVHSSLAMLTIALCGSE QKQ+YLPSLA+L T+ACWALTEP YGSDASAL 
Sbjct: 126 VDASCSTFFLVHSSLAMLTIALCGSEAQKQEYLPSLAELKTVACWALTEPDYGSDASALR 185

Query: 188 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENK 247
           TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGY+VKK+ PGLT TKIENK
Sbjct: 186 TTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYIVKKNVPGLTATKIENK 245

Query: 248 IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCH 307
           IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIG+SMGVYDMCH
Sbjct: 246 IGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGLSMGVYDMCH 305

Query: 308 RYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSW 367
           RYLKERKQFGAPLAAFQINQ+KLV+MLGN+QAM+L+GWRLCKLYEKG MTPGHASLGK+W
Sbjct: 306 RYLKERKQFGAPLAAFQINQEKLVRMLGNVQAMVLIGWRLCKLYEKGKMTPGHASLGKAW 365

Query: 368 ITARARETVALGRELLGGNGILSDFLVAK 396
           IT RARETVALGRELLGGNGIL+DFLVAK
Sbjct: 366 ITLRARETVALGRELLGGNGILADFLVAK 394

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139128|ref|XP_002322987.1| predicted protein [Populus trichocarpa] gi|222867617|gb|EEF04748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359481157|ref|XP_003632582.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582668|ref|XP_002532113.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223528216|gb|EEF30275.1| acyl-CoA dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359481155|ref|XP_002264086.2| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 1 [Vitis vinifera] gi|296083170|emb|CBI22806.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351722526|ref|NP_001236991.1| acyl-CoA oxidase [Glycine max] gi|156972244|gb|ABU98950.1| acyl-CoA oxidase [Glycine max] Back     alignment and taxonomy information
>gi|356521028|ref|XP_003529160.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|47118098|gb|AAT11172.1| putative short-chain acyl-CoA oxidase [Tropaeolum majus] Back     alignment and taxonomy information
>gi|224087764|ref|XP_002308225.1| predicted protein [Populus trichocarpa] gi|222854201|gb|EEE91748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297819888|ref|XP_002877827.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] gi|297323665|gb|EFH54086.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
TAIR|locus:2074403436 ACX4 "acyl-CoA oxidase 4" [Ara 0.938 0.908 0.815 9.3e-178
DICTYBASE|DDB_G0274585430 DDB_G0274585 "putative acyl-Co 0.834 0.818 0.415 2e-72
WB|WBGene00010052409 F54D5.7 [Caenorhabditis elegan 0.829 0.855 0.334 1.7e-52
UNIPROTKB|Q47V61394 gcdH "Glutaryl-CoA dehydrogena 0.824 0.883 0.345 5.2e-49
TIGR_CMR|CPS_4667394 CPS_4667 "glutaryl-CoA dehydro 0.824 0.883 0.345 5.2e-49
UNIPROTKB|Q4KKG4393 gcdH "Glutaryl-CoA dehydrogena 0.815 0.875 0.341 8.5e-49
UNIPROTKB|P95208395 fadE7 "Glutaryl-CoA dehydrogen 0.836 0.893 0.323 1.4e-48
ZFIN|ZDB-GENE-040426-1855441 gcdh "glutaryl-Coenzyme A dehy 0.848 0.811 0.342 1.2e-47
RGD|1308829447 Gcdh "glutaryl-CoA dehydrogena 0.819 0.774 0.353 1.6e-47
FB|FBgn0031824419 CG9547 [Drosophila melanogaste 0.834 0.840 0.350 2e-47
TAIR|locus:2074403 ACX4 "acyl-CoA oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1726 (612.6 bits), Expect = 9.3e-178, P = 9.3e-178
 Identities = 323/396 (81%), Positives = 357/396 (90%)

Query:     1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
             M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct:     1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query:    61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
             A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct:    61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query:   121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
             A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct:   121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query:   181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
             SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct:   181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query:   241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
              TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct:   241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300

Query:   301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360
             G+YDMCHRYLKERKQFGAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG 
Sbjct:   301 GIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQ 360

Query:   361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAK 396
             ASLGK+WI+++ARET +LGRELLGGNGIL+DFLVAK
Sbjct:   361 ASLGKAWISSKARETASLGRELLGGNGILADFLVAK 396
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=ISS
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IMP;IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA;IMP;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0046459 "short-chain fatty acid metabolic process" evidence=TAS
GO:0005829 "cytosol" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0044265 "cellular macromolecule catabolic process" evidence=RCA
DICTYBASE|DDB_G0274585 DDB_G0274585 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4667 CPS_4667 "glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P95208 fadE7 "Glutaryl-CoA dehydrogenase" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1855 gcdh "glutaryl-Coenzyme A dehydrogenase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1308829 Gcdh "glutaryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0031824 CG9547 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46703ACDP_MYCLE1, ., 3, ., 9, 9, ., -0.33230.80090.8688yesno
P63427ACDP_MYCTU1, ., 3, ., 9, 9, ., -0.33230.80800.8766yesno
P52042ACDS_CLOAB1, ., 3, ., 8, ., 10.31510.81510.9076yesno
Q20772GCDH_CAEEL1, ., 3, ., 9, 9, ., 70.33420.82930.8557yesno
Q96329ACOX4_ARATH1, ., 3, ., 3, ., 60.81150.94310.9128yesno
P45857ACDB_BACSU1, ., 3, ., 9, 9, ., -0.32880.86250.9604yesno
Q60759GCDH_MOUSE1, ., 3, ., 9, 9, ., 70.33960.86250.8310yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3.60.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 0.0
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 0.0
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 2e-79
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 3e-76
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 5e-65
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 3e-53
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 2e-47
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 3e-46
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 2e-40
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 6e-36
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 9e-35
pfam02771113 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, 6e-33
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 2e-28
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 2e-27
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 6e-27
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 2e-24
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 1e-23
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 5e-21
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 2e-19
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 6e-17
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 2e-16
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 4e-14
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 1e-13
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 1e-12
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 1e-12
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 2e-10
PRK09463 777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 2e-10
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 9e-10
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 1e-09
cd01163377 cd01163, DszC, Dibenzothiophene (DBT) desulfurizat 4e-09
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 6e-09
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 9e-09
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 3e-06
PTZ00457 520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 9e-06
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 2e-05
cd01159370 cd01159, NcnH, Naphthocyclinone hydroxylase 0.002
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information 
 Score =  799 bits (2066), Expect = 0.0
 Identities = 326/370 (88%), Positives = 349/370 (94%)

Query: 27  DISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE 86
           D+SVAFPQATPAS FPP  SDYYQFDDLLT EEQA+R +VRECMEKE+APIM EYWEKAE
Sbjct: 1   DVSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAE 60

Query: 87  FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 146
           FPFH+IPKLG+L +AGGTIKGYGCPG S+T +AIA AE+ARVDASCSTFILVHSSLAMLT
Sbjct: 61  FPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLT 120

Query: 147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206
           IALCGSE QKQKYLPSLAQL+T+ACWALTEP YGSDAS+LNTTATKVEGGWIL GQKRWI
Sbjct: 121 IALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWI 180

Query: 207 GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
           GNSTFADVLVIFARNTTTNQING++VKK APGL  TKIENKIGLR+VQNGDI+LK VFVP
Sbjct: 181 GNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP 240

Query: 267 DEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQIN 326
           DEDRLPGVNSFQDT+KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQIN
Sbjct: 241 DEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQIN 300

Query: 327 QQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGN 386
           Q+KLV+MLGNIQAM LVGWRLCKLYE G MTPGHASLGK+WIT +ARETVALGRELLGGN
Sbjct: 301 QEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLGGN 360

Query: 387 GILSDFLVAK 396
           GIL+DFLVAK
Sbjct: 361 GILADFLVAK 370

Length = 412
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
PLN02312 680 acyl-CoA oxidase 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
KOG0137 634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
KOG0135 661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.96
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.87
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.77
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.64
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.64
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.53
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.51
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 98.8
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 96.08
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 96.04
PTZ00457520 acyl-CoA dehydrogenase; Provisional 95.09
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 92.44
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-79  Score=557.36  Aligned_cols=358  Identities=31%  Similarity=0.461  Sum_probs=347.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcCch
Q 014583           53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS  131 (422)
Q Consensus        53 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d~s  131 (422)
                      ..+++.+..+++.+++|+++.+.|.++++|++..+|..+++.+.++||+++.+ ++|||.|.+......++||+++.|+|
T Consensus        35 ~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~s  114 (398)
T KOG0139|consen   35 QILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDAS  114 (398)
T ss_pred             hhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCcc
Confidence            46789999999999999999999999999999999999999999999999987 99999999999999999999999999


Q ss_pred             hhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCCCc
Q 014583          132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF  211 (422)
Q Consensus       132 ~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a~~  211 (422)
                      +++++.+|+++...+|..||+++||++|+|.+ .|+.++|||+|||+.|||+..+.|+|+++||.|+|||.|.||||+..
T Consensus       115 v~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~  193 (398)
T KOG0139|consen  115 VGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGE  193 (398)
T ss_pred             ceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcc
Confidence            99999999999999999999999999888875 68889999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEEecCC---CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC-CCHHHHHHHhHHH
Q 014583          212 ADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVS  287 (422)
Q Consensus       212 ad~~~v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~-~~~~~~~~~l~~~  287 (422)
                      |++++|+|.++..   +|+++|+||++.||+++.+..+|+|||++.++.++|+||+||++++||+. .|+++....|+.+
T Consensus       194 A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~g  273 (398)
T KOG0139|consen  194 ADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAG  273 (398)
T ss_pred             cceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCcc
Confidence            9999999999654   78999999999999999999999999999999999999999999999996 7999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhHHHHH
Q 014583          288 RVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSW  367 (422)
Q Consensus       288 r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~~~~~~~~~~~K~~  367 (422)
                      |++++++.+|++++|++.++.|+++|.+||++|.++|.+|++||+|.+++|++|+++|+++++-|.+.+-..+++|+|.+
T Consensus       274 RIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~  353 (398)
T KOG0139|consen  274 RIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLY  353 (398)
T ss_pred             ceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHH
Q 014583          368 ITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCK  411 (422)
Q Consensus       368 ~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~  411 (422)
                      +++.+..+.+.|+|+.||.||++++|.+|+|||++...+++|+.
T Consensus       354 ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGts  397 (398)
T KOG0139|consen  354 ASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTS  397 (398)
T ss_pred             hhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCC
Confidence            99999999999999999999999999999999999999988753

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 0.0
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 0.0
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 6e-55
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 2e-54
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 5e-53
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 5e-53
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 6e-53
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 2e-50
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 2e-50
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 2e-50
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 5e-49
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 6e-39
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 1e-38
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 9e-38
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 3e-37
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 1e-36
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 3e-36
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 6e-34
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 3e-30
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 3e-30
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 1e-29
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 5e-29
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 3e-27
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 4e-27
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 4e-27
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 5e-27
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 7e-27
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 2e-26
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 3e-26
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 5e-26
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 1e-25
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 2e-23
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 2e-23
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 2e-18
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 2e-13
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 1e-12
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 3e-10
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 6e-09
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 1e-08
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 2e-07
4doy_A437 Crystal Structure Of Dibenzothiophene Desulfurizati 3e-06
3m9v_A439 X-Ray Structure Of A Kijd3 In Complex With Dtdp Len 7e-05
3mkh_A438 Podospora Anserina Nitroalkane Oxidase Length = 438 3e-04
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure 
Iteration: 1

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/398 (81%), Positives = 357/398 (89%)
Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
Query: 301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360
           G+YDMCHRYLKERKQFGAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG 
Sbjct: 301 GIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQ 360
Query: 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKVI 398
           ASLGK+WI+++ARET +LGRELLGGNGIL+DFLVAK  
Sbjct: 361 ASLGKAWISSKARETASLGRELLGGNGILADFLVAKAF 398
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437 Back     alignment and structure
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439 Back     alignment and structure
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 0.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-179
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 1e-178
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 1e-176
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 1e-172
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 1e-172
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 4e-88
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 9e-88
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 4e-87
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 2e-86
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 3e-86
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 3e-85
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 9e-85
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 7e-83
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 1e-82
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 4e-82
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 3e-80
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 4e-79
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 5e-79
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 3e-78
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 2e-75
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 2e-75
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 2e-71
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 1e-70
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 4e-70
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 2e-69
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 3e-69
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 2e-67
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 6e-61
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 6e-43
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 6e-42
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 2e-33
3djl_A 541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 7e-23
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 6e-22
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 5e-19
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 4e-17
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 2e-16
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 1e-15
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 1e-15
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
 Score =  565 bits (1458), Expect = 0.0
 Identities = 323/396 (81%), Positives = 357/396 (90%)

Query: 1   MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
           M + SS  +   +K  +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1   MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60

Query: 61  AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
           A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T  AI
Sbjct: 61  AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120

Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
           A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP  G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180

Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
           SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL 
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240

Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
            TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300

Query: 301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360
           G+YDMCHRYLKERKQFGAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG 
Sbjct: 301 GIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQ 360

Query: 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAK 396
           ASLGK+WI+++ARET +LGRELLGGNGIL+DFLVAK
Sbjct: 361 ASLGKAWISSKARETASLGRELLGGNGILADFLVAK 396
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
3djl_A 541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.96
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 94.62
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 89.94
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
Probab=100.00  E-value=4.9e-72  Score=560.68  Aligned_cols=385  Identities=80%  Similarity=1.257  Sum_probs=360.2

Q ss_pred             CCCCCCCCCCCCCcccCccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccccccCCCCCC
Q 014583           35 ATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS  114 (422)
Q Consensus        35 ~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~  114 (422)
                      .++.+.+|+.+.|++.|++.+++++.++++.+++|+++++.|...+.++++.+|.+.|++|+++||+++.+++|||.|++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~pe~GG~G~~  114 (436)
T 2ix5_A           35 ATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLS  114 (436)
T ss_dssp             SCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHTTTCTTTTCCSTTCCCCC
T ss_pred             cCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHHcCCCcCcCCCCCCCCCC
Confidence            34557778888889999989999999999999999999999988888888899999999999999999977799999999


Q ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEEC
Q 014583          115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE  194 (422)
Q Consensus       115 ~~~~~~~~e~la~~d~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~  194 (422)
                      +.+...+.|+++++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|++++
T Consensus       115 ~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~g  194 (436)
T 2ix5_A          115 ITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVE  194 (436)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred             HHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeC
Confidence            99999999999999999988888887778888999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeEeeecCCCCcccEEEEEEEecCCCCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCCC
Q 014583          195 GGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV  274 (422)
Q Consensus       195 ~~~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~  274 (422)
                      |||+|||+|.||||+..||+++|+|++++++++++|+||.+.|||++.+.|+++|++++++++|.|+||+||++++|+..
T Consensus       195 dg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~  274 (436)
T 2ix5_A          195 GGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV  274 (436)
T ss_dssp             TEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC
T ss_pred             CEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc
Confidence            99999999999999999999999999975567899999999999999999999999999999999999999999999887


Q ss_pred             CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014583          275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG  354 (422)
Q Consensus       275 ~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fg~~l~~~~~vq~~La~~~~~~~a~~~~~~~~a~~~d~~  354 (422)
                      +++......+..+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.++.+
T Consensus       275 ~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g  354 (436)
T 2ix5_A          275 NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETG  354 (436)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            78888888899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHHhCCccccCcchHHHHHhhhhccccHHHHHHHHHHHHh
Q 014583          355 AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKVIMLFFLHLDHFVCKNLIVSNYL  419 (422)
Q Consensus       355 ~~~~~~~~~~K~~~~~~~~~v~~~~~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~~~~~~~~~~~~  419 (422)
                      .....+++++|+++++.+.++++.++|+|||+||+.+++++|+|||++...+++++++++...+.
T Consensus       355 ~~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~ia  419 (436)
T 2ix5_A          355 QMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTG  419 (436)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHHHH
Confidence            76677889999999999999999999999999999999999999999999988666555554443
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 2e-45
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 2e-39
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 3e-39
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 4e-38
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 2e-37
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 2e-37
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 3e-35
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 3e-29
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 3e-20
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 2e-19
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 1e-16
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 7e-15
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 7e-14
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 7e-10
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 2e-09
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 3e-08
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 5e-08
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 1e-07
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 7e-07
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 2e-06
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 1e-05
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 3e-05
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 3e-05
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 5e-04
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 6e-04
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (392), Expect = 2e-45
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 11/235 (4%)

Query: 52  DDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTIK 106
           DD    L+ E++ +R  + + +++ +AP   E     EF        +LG L V G T  
Sbjct: 2   DDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAP 61

Query: 107 GYGCP-GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
                 G       + + EI+R   +       HS+L +  +   G+E QK+KYLP L  
Sbjct: 62  VQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLIS 121

Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--- 222
              I   A++EP  GSD  ++   A K    +IL G K WI N   ADVL+++A+     
Sbjct: 122 GEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 181

Query: 223 --TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
              +  I  ++V+K  PG + +K  +K+G+R     +++ +   +P  + L   N
Sbjct: 182 VPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 236
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 100.0
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 100.0
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.94
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.93
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.93
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.93
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.93
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.93
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.92
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.92
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.92
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.91
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.91
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.89
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.88
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 96.51
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-46  Score=343.90  Aligned_cols=222  Identities=27%  Similarity=0.483  Sum_probs=211.3

Q ss_pred             CccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhCCCCHHHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHHhcC
Q 014583           51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD  129 (422)
Q Consensus        51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~~~e~la~~d  129 (422)
                      |++.||++++++++.+++|+++++.|.+.++|+++.+|.++|++++++||+++.+ +++||.|.+......+.|++++.+
T Consensus         2 mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~   81 (231)
T d3mdea2           2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGC   81 (231)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccc
Confidence            7889999999999999999999999999999999999999999999999999987 999999999999999999999999


Q ss_pred             chhhHHHHHHhhHHHHHHHhcCCHHHHHhhhhhhhcCcceeEEeecCCCCCCCcCCCeeEEEEECCEEEEEeEeeecCCC
Q 014583          130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS  209 (422)
Q Consensus       130 ~s~~~~~~~h~~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~LnG~K~~is~a  209 (422)
                      .++++.+..|. .+...|..+|+++||++|||++.+|++++|+|+|||++|||+.+++|+|++++|+|+|||+|+||||+
T Consensus        82 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~  160 (231)
T d3mdea2          82 TGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG  160 (231)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             ccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCc
Confidence            99888887776 56778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccEEEEEEEecCC------CCeEEEEEeCCCCCeeeecccCccccccccceeEEEceeecCCCCCCCC
Q 014583          210 TFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG  273 (422)
Q Consensus       210 ~~ad~~~v~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~  273 (422)
                      ..+|+++|+|+++.+      .++++|+||++.|||++.+.|+++|+++++++.|.|+||+||++++||.
T Consensus       161 ~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~  230 (231)
T d3mdea2         161 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG  230 (231)
T ss_dssp             TTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSC
T ss_pred             hhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecC
Confidence            999999999998643      2588999999999999999999999999999999999999999999985
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure