Citrus Sinensis ID: 014593

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYHI
ccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccEEEccccccccccEEEEEEEEcccccccccccccccccccEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHccEEcccccccccccccccccEEEEEEEcEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHccc
ccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccEEEEEEEEEccEccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccEEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHEEEccc
MAAMMQPQIILLkegtdtsqgKAQLVSNINACTAVADVVrstlgprgmdklihddkgtvtisnDGATIMKLLDIVHPAAKILVDIAksqdsevgdgTTTVVLLAAEFLREakpfiedgvhpqnliRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVgaigdgdrlnmigikkvpggtmrdsfLVNGVAFkktfsyagfeqqpkkflnpkILLLNIELELksekenaeirlsdpsqyqsiVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAtggtvqtsVNNVVDEVLGtcehfeerqvgnerfnifsgcpsgrtATIVLRGGADQFIEEAERSLHDAIMIVRRATknstvvagggaiDVRFYHI
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTlgprgmdklihddkgtvTISNDGATIMKLLDIVHPAAKILVDIAksqdsevgdGTTTVVLLAAEFLREAkpfiedgvhpqNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTlsskliggekEFFASMVVDAVgaigdgdrlnMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAgfeqqpkkflnpKILLLNIELELKSEKEnaeirlsdpsqyqSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAatggtvqtsvnnVVDEVLGTCEHFEERQVGnerfnifsgcpsgRTATIVLRGGADQFIEEAERSLHDAIMIVrratknstvvagggaidvrfyhi
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFlnpkilllnielelksekenAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYHI
**********************AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKEL**************LLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL***************QYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFY**
******P********************NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYHI
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYHI
*****QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRFYHI
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MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFxxxxxxxxxxxxxxxxxxxxxSTVVAGGGAIDVRFYHI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
Q5ZJK8 553 T-complex protein 1 subun yes no 0.985 0.752 0.680 1e-169
P80313 544 T-complex protein 1 subun yes no 0.985 0.764 0.668 1e-166
Q99832 543 T-complex protein 1 subun yes no 0.985 0.766 0.668 1e-165
Q2NKZ1 543 T-complex protein 1 subun yes no 0.985 0.766 0.665 1e-165
Q5R5C8 543 T-complex protein 1 subun yes no 0.985 0.766 0.665 1e-164
Q54ER7 555 T-complex protein 1 subun yes no 0.981 0.745 0.628 1e-157
P87153 558 Probable T-complex protei yes no 0.978 0.740 0.637 1e-153
P54409 558 T-complex protein 1 subun N/A no 0.988 0.747 0.629 1e-152
O77323 539 T-complex protein 1 subun yes no 0.990 0.775 0.599 1e-146
P42943 550 T-complex protein 1 subun yes no 0.971 0.745 0.572 1e-140
>sp|Q5ZJK8|TCPH_CHICK T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1 Back     alignment and function desciption
 Score =  594 bits (1531), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/416 (68%), Positives = 344/416 (82%)

Query: 4   MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISN 63
           MM   +ILLKEGTDTSQG  QLVSNINAC  +A+ VR+TLGPRGMDKLI DD+G  TISN
Sbjct: 1   MMPTPVILLKEGTDTSQGIPQLVSNINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISN 60

Query: 64  DGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQN 123
           DGATI+KLLD+VHPAAK LVDIAKSQD+EVGDGTT+V LLAAEFL++ KP++E+G+HPQ 
Sbjct: 61  DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120

Query: 124 LIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVV 183
           +IR+FR A+  A+ K+K++A S++ +  +E++ LL KCAAT LSSKLI   KEFF+ MVV
Sbjct: 121 IIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVV 180

Query: 184 DAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243
           DAV  + D  +L MIGIKKV GG + DS LV GVAFKKTFSYAGFE QPKK+ +PKI LL
Sbjct: 181 DAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYQSPKIALL 240

Query: 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLAT 303
           N+ELELK+EK+NAE+R++    YQ+IVDAEWNI+YDKLDK  +SGAKVVLS+L IGD+AT
Sbjct: 241 NVELELKAEKDNAEVRVNTVEDYQAIVDAEWNILYDKLDKIHKSGAKVVLSKLPIGDVAT 300

Query: 304 QYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNI 363
           QYFADRD+FCAGRV EEDL R   A GG++QTSVN + D+VLG CE FEE Q+G +R+N 
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSDDVLGRCELFEEIQIGGDRYNF 360

Query: 364 FSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRF 419
           F+GCP  +T TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI++  
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Gallus gallus (taxid: 9031)
>sp|P80313|TCPH_MOUSE T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1 Back     alignment and function description
>sp|Q99832|TCPH_HUMAN T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2 Back     alignment and function description
>sp|Q2NKZ1|TCPH_BOVIN T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=1 SV=1 Back     alignment and function description
>sp|Q5R5C8|TCPH_PONAB T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1 Back     alignment and function description
>sp|Q54ER7|TCPH_DICDI T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1 Back     alignment and function description
>sp|P87153|TCPH_SCHPO Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct7 PE=1 SV=1 Back     alignment and function description
>sp|P54409|TCPH_TETPY T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1 Back     alignment and function description
>sp|O77323|TCPH_PLAF7 T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P3.6 PE=3 SV=1 Back     alignment and function description
>sp|P42943|TCPH_YEAST T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
224132234 561 predicted protein [Populus trichocarpa] 0.988 0.743 0.920 0.0
357493557 561 T-complex protein 1 subunit eta [Medicag 0.988 0.743 0.923 0.0
356554348 560 PREDICTED: T-complex protein 1 subunit e 0.988 0.744 0.916 0.0
356501324 560 PREDICTED: T-complex protein 1 subunit e 0.988 0.744 0.916 0.0
449452668 562 PREDICTED: T-complex protein 1 subunit e 0.988 0.741 0.928 0.0
359497202 562 PREDICTED: T-complex protein 1 subunit e 0.988 0.741 0.920 0.0
302399091 558 TCP domain class transcription factor [M 0.985 0.745 0.925 0.0
224102919 561 predicted protein [Populus trichocarpa] 0.988 0.743 0.916 0.0
334185265 555 TCP-1/cpn60 chaperonin family protein [A 0.995 0.756 0.914 0.0
147784036 567 hypothetical protein VITISV_002043 [Viti 0.988 0.735 0.909 0.0
>gi|224132234|ref|XP_002328218.1| predicted protein [Populus trichocarpa] gi|222837733|gb|EEE76098.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/417 (92%), Positives = 404/417 (96%)

Query: 1   MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVT 60
           MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVR+TLGPRGMDKLIHDDKG VT
Sbjct: 1   MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRTTLGPRGMDKLIHDDKGNVT 60

Query: 61  ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120
           ISNDGATIMKLLDI+HPA+KILVDIAKSQDSEVGDGTTTVVLLA EFL+EAKPF+E+GVH
Sbjct: 61  ISNDGATIMKLLDIIHPASKILVDIAKSQDSEVGDGTTTVVLLAGEFLKEAKPFVEEGVH 120

Query: 121 PQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFAS 180
           PQNLIRS+R A   AI+KVKELA SIEG+SLEEKK LL+KCAATTLSSKLIGGEKEFFAS
Sbjct: 121 PQNLIRSYRTACNLAIEKVKELAVSIEGKSLEEKKSLLAKCAATTLSSKLIGGEKEFFAS 180

Query: 181 MVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKI 240
           MVVDAV AIG+ DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF+NPK+
Sbjct: 181 MVVDAVIAIGNDDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFVNPKM 240

Query: 241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD 300
           LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD
Sbjct: 241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD 300

Query: 301 LATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNER 360
           LATQYFADRDIFCAGRV+EEDL RV+AATGGTVQT+VNN++DEVLGTCE FEE+QVGNER
Sbjct: 301 LATQYFADRDIFCAGRVSEEDLQRVSAATGGTVQTTVNNIIDEVLGTCEIFEEKQVGNER 360

Query: 361 FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDV 417
           FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA KNSTVVAGGGAID+
Sbjct: 361 FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAMKNSTVVAGGGAIDM 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357493557|ref|XP_003617067.1| T-complex protein 1 subunit eta [Medicago truncatula] gi|355518402|gb|AET00026.1| T-complex protein 1 subunit eta [Medicago truncatula] Back     alignment and taxonomy information
>gi|356554348|ref|XP_003545509.1| PREDICTED: T-complex protein 1 subunit eta-like [Glycine max] Back     alignment and taxonomy information
>gi|356501324|ref|XP_003519475.1| PREDICTED: T-complex protein 1 subunit eta-like [Glycine max] Back     alignment and taxonomy information
>gi|449452668|ref|XP_004144081.1| PREDICTED: T-complex protein 1 subunit eta-like [Cucumis sativus] gi|449493528|ref|XP_004159333.1| PREDICTED: T-complex protein 1 subunit eta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359497202|ref|XP_002266000.2| PREDICTED: T-complex protein 1 subunit eta-like [Vitis vinifera] gi|296088202|emb|CBI35717.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302399091|gb|ADL36840.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|224102919|ref|XP_002312854.1| predicted protein [Populus trichocarpa] gi|222849262|gb|EEE86809.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|334185265|ref|NP_001189863.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] gi|332641585|gb|AEE75106.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147784036|emb|CAN70107.1| hypothetical protein VITISV_002043 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
TAIR|locus:2081491 557 AT3G11830 [Arabidopsis thalian 0.988 0.748 0.870 1.3e-185
UNIPROTKB|Q5ZJK8 553 CCT7 "T-complex protein 1 subu 0.981 0.748 0.649 5.5e-141
MGI|MGI:107184 544 Cct7 "chaperonin containing Tc 0.981 0.761 0.635 2.2e-137
RGD|1306422 544 Cct7 "chaperonin containing Tc 0.981 0.761 0.632 2.2e-137
ZFIN|ZDB-GENE-020419-7 547 cct7 "chaperonin containing TC 0.981 0.756 0.625 4.6e-137
UNIPROTKB|Q2NKZ1 543 CCT7 "T-complex protein 1 subu 0.981 0.762 0.635 5.8e-137
UNIPROTKB|F1SLF6 543 CCT7 "Uncharacterized protein" 0.978 0.760 0.635 7.4e-137
UNIPROTKB|B6V9S8 543 B6V9S8 "Chaperonin-containing 0.981 0.762 0.632 7.4e-137
UNIPROTKB|Q99832 543 CCT7 "T-complex protein 1 subu 0.981 0.762 0.635 2e-136
UNIPROTKB|F1MWR8 541 CCT7 "T-complex protein 1 subu 0.969 0.756 0.638 3.2e-136
TAIR|locus:2081491 AT3G11830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1800 (638.7 bits), Expect = 1.3e-185, P = 1.3e-185
 Identities = 363/417 (87%), Positives = 380/417 (91%)

Query:     1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVT 60
             MA+MMQPQIILLKEGTDTSQGKAQLVSNINACTAV DVVR+TLGPRGMDKLIHDDKG+VT
Sbjct:     1 MASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVT 60

Query:    61 ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120
             ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFL+EAKPFIEDGVH
Sbjct:    61 ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVH 120

Query:   121 PQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFAS 180
              QNLIRS+R AS  AI KVKELA SIEG+S+EEKK LL+KCAATTLSSKLIGGEKEFFA+
Sbjct:   121 AQNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFAT 180

Query:   181 MVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXX 240
             MVVDAV AIG+ DRLN+IGIKKVPGG MRDSFLV+GVAFKKTFSYAGFEQQPKKF     
Sbjct:   181 MVVDAVMAIGNDDRLNLIGIKKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQPKKFLNPKI 240

Query:   241 XXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD 300
                            AEIRLSDPSQYQSIVDAEWNIIYDKLDKCV+SGAKVVLSRLAIGD
Sbjct:   241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVESGAKVVLSRLAIGD 300

Query:   301 LATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNER 360
             LATQYFADRDIFCAGRVAEEDL RVAAA GGTVQTSVNN++DEVLGTCE FEE+QVG ER
Sbjct:   301 LATQYFADRDIFCAGRVAEEDLNRVAAAAGGTVQTSVNNIIDEVLGTCEIFEEKQVGGER 360

Query:   361 FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDV 417
             FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA KNSTVV GGGAID+
Sbjct:   361 FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDM 417
GO:0005524 "ATP binding" evidence=IEA
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
UNIPROTKB|Q5ZJK8 CCT7 "T-complex protein 1 subunit eta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:107184 Cct7 "chaperonin containing Tcp1, subunit 7 (eta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306422 Cct7 "chaperonin containing Tcp1, subunit 7 (eta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-7 cct7 "chaperonin containing TCP1, subunit 7 (eta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NKZ1 CCT7 "T-complex protein 1 subunit eta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLF6 CCT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B6V9S8 B6V9S8 "Chaperonin-containing T-complex polypeptide eta subunit" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q99832 CCT7 "T-complex protein 1 subunit eta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWR8 CCT7 "T-complex protein 1 subunit eta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZJK8TCPH_CHICKNo assigned EC number0.68020.98570.7522yesno
P54410TCPH_TETTHNo assigned EC number0.63270.83170.9943N/Ano
P42943TCPH_YEASTNo assigned EC number0.57280.97150.7454yesno
O77323TCPH_PLAF7No assigned EC number0.59900.99050.7755yesno
Q5R5C8TCPH_PONABNo assigned EC number0.66580.98570.7661yesno
Q2NKZ1TCPH_BOVINNo assigned EC number0.66580.98570.7661yesno
P80313TCPH_MOUSENo assigned EC number0.66820.98570.7647yesno
Q99832TCPH_HUMANNo assigned EC number0.66820.98570.7661yesno
Q54ER7TCPH_DICDINo assigned EC number0.62820.98100.7459yesno
P87153TCPH_SCHPONo assigned EC number0.63700.97860.7401yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 0.0
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 0.0
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 1e-146
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-128
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-116
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 1e-115
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-111
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 1e-109
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-106
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-95
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 4e-94
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 2e-86
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-84
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-80
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-80
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-79
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-78
cd03337 480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 4e-78
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 5e-68
cd03341 472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 2e-59
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-55
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 4e-49
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 5e-46
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 4e-22
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-14
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 2e-14
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 5e-13
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 2e-11
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 2e-11
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 3e-11
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 6e-11
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-10
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 3e-09
CHL00093 529 CHL00093, groEL, chaperonin GroEL 7e-08
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-06
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information 
 Score =  804 bits (2078), Expect = 0.0
 Identities = 310/409 (75%), Positives = 358/409 (87%)

Query: 8   QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGAT 67
            IILLKEGTDTSQGK QL+SNINAC A+AD VR+TLGPRGMDKLI D +G VTISNDGAT
Sbjct: 1   PIILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGAT 60

Query: 68  IMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRS 127
           I+KLLDIVHPAAK LVDIAKSQD+EVGDGTT+VV+LA EFL+EAKPFIEDGVHPQ +IR 
Sbjct: 61  ILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRG 120

Query: 128 FRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVG 187
           +R A   AI+K+KE+A +I+ +  EE++ LL KCAAT L+SKLI  EKEFFA MVVDAV 
Sbjct: 121 YRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVL 180

Query: 188 AIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247
           ++ D   L+MIGIKKVPGG++ DS LVNGVAFKKTFSYAGFEQQPKKF NPKILLLN+EL
Sbjct: 181 SLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVEL 240

Query: 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA 307
           ELK+EK+NAE+R+ DP +YQ+IVDAEW IIYDKL+K V+SGA VVLS+L IGDLATQYFA
Sbjct: 241 ELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFA 300

Query: 308 DRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGC 367
           DRDIFCAGRV EEDL RVA ATGG++QT+V+N+ D+VLGTC  FEERQVG ER+NIF+GC
Sbjct: 301 DRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGC 360

Query: 368 PSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAID 416
           P  +T TI+LRGGA+QFIEEAERSLHDAIMIVRRA KN +VVAGGGAI+
Sbjct: 361 PKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIE 409

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
KOG0361 543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03343 517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0363 527 consensus Chaperonin complex component, TCP-1 beta 100.0
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358 534 consensus Chaperonin complex component, TCP-1 delt 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 100.0
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
PF00118 485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0364 527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0360 545 consensus Chaperonin complex component, TCP-1 alph 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0359 520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0362 537 consensus Chaperonin complex component, TCP-1 thet 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0357 400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356 550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.93
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-92  Score=652.63  Aligned_cols=419  Identities=75%  Similarity=1.121  Sum_probs=409.6

Q ss_pred             CCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHH
Q 014593            4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV   83 (422)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~   83 (422)
                      ||+||+..++++++.++|.-.+.+|+.||.++++.++|||||+||||+|++..|+++|||||+|||+-|++.||+++.++
T Consensus         1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV   80 (543)
T KOG0361|consen    1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV   80 (543)
T ss_pred             CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHh
Q 014593           84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA  163 (422)
Q Consensus        84 ~~~~~~~~~~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~  163 (422)
                      +.+++||.++||||||+|+|++++|+++-.+++.|+||..|+++|++|...|++.++++++.++..+..+.++.|.+.|.
T Consensus        81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~  160 (543)
T KOG0361|consen   81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA  160 (543)
T ss_pred             HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999987777777999999999


Q ss_pred             HhhccccccchhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEE
Q 014593          164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL  243 (422)
Q Consensus       164 tsl~sk~~~~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~  243 (422)
                      |+++||++++..++|+++++||+..+..+.+.+.|.|++++||+++||.+++|+.|.+.|++.+|+++|+++.||||+++
T Consensus       161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~L  240 (543)
T KOG0361|consen  161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL  240 (543)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEE
Confidence            99999999999999999999999998744478999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHH
Q 014593          244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL  323 (422)
Q Consensus       244 ~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~  323 (422)
                      |-.||.+.++.|+++.+.++++++.+++.||+.+.+.+++|...|++||++.-.|.|.+.+||++++|+|.+||+.+||.
T Consensus       241 nvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~  320 (543)
T KOG0361|consen  241 NVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN  320 (543)
T ss_pred             eeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeEceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Q 014593          324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT  403 (422)
Q Consensus       324 ~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~  403 (422)
                      |+..++|++|.++.+++.+..||+|..|+++++|++||-+|+||+..+.||++|||+-++.++|.+|++|||++++|.++
T Consensus       321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrral  400 (543)
T KOG0361|consen  321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRAL  400 (543)
T ss_pred             HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEecCCHHHHhhhcC
Q 014593          404 KNSTVVAGGGAIDVRFYHI  422 (422)
Q Consensus       404 ~~~~vv~GGG~~E~~ls~~  422 (422)
                      ++..+|+|||++||++|+|
T Consensus       401 kn~~vVaGGGaiEMElSk~  419 (543)
T KOG0361|consen  401 KNDSVVAGGGAIEMELSKY  419 (543)
T ss_pred             ccCcEeeCCceeeehHHHH
Confidence            9999999999999999975

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-152
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-130
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 2e-75
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 6e-72
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 8e-66
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-65
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-65
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 1e-64
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-64
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 5e-63
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 1e-62
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 6e-62
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 1e-61
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 1e-61
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-56
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-56
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-55
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 2e-55
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-55
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 2e-54
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 3e-54
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-53
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 7e-50
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-49
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-47
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-45
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-38
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-32
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-29
3iyg_Q 512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-28
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-28
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 6e-17
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 8e-13
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 2e-12
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 3e-12
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-10
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 5e-09
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 5e-09
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 5e-09
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 5e-09
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 6e-09
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 6e-09
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 6e-09
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 9e-09
1ss8_A 524 Groel Length = 524 9e-09
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 9e-09
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 1e-08
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 1e-08
1oel_A 547 Conformational Variability In The Refined Structure 1e-08
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-08
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 2e-07
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 2e-06
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  534 bits (1375), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/407 (63%), Positives = 315/407 (77%)
Query: 13  KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLL 72
           KEGTD+SQG  QLVSNI+AC  +A+ VR+TLGPRGMDKLI D +G  TISNDGATI+KLL
Sbjct: 1   KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60
Query: 73  DIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
           D+VHPAAK LVDIAKSQD+EVGDGTT+V LLAAEFL++ KP++E+G+HPQ +IR+FR A+
Sbjct: 61  DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120
Query: 133 YKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG 192
             A+ K+KE+A +++ +   E+++LL KCA T LSSKLI  +K FFA MVVDAV  + D 
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 180
Query: 193 DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXX 252
            +L MIGIKKV GG + +S LV GVAFKKTFSYAGFE QPKK+                 
Sbjct: 181 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240
Query: 253 XXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312
              AEIR+     YQ+IVDAEWNI+YDKL+K   SGAKVVLS+L IGD+ATQYFADRD+F
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMF 300
Query: 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRT 372
           CAGRV EEDL R   A GG++QTSVN +  +VLG C+ FEE Q+G ER+N F+GCP  +T
Sbjct: 301 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT 360
Query: 373 ATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDVRF 419
            TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI++  
Sbjct: 361 CTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 407
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-177
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-172
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 3e-74
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 7e-63
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 3e-10
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 3e-10
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 6e-10
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
 Score =  605 bits (1563), Expect = 0.0
 Identities = 236/419 (56%), Positives = 314/419 (74%), Gaps = 3/419 (0%)

Query: 1   MA-AMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTV 59
           M      P I++LKEGTD SQGK Q++SNINAC AV + ++ TLGP G D LI       
Sbjct: 1   MNFGSQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKT 60

Query: 60  TISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGV 119
           TISNDGATI+KLLD+VHPAAK LVDI+++QD+EVGDGTT+V +LA E ++EAKPF+E+G+
Sbjct: 61  TISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGI 120

Query: 120 HPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFA 179
               +++ +R A   A++K+ ELA  I  +    ++ L  +CA T +SSKLI    +FF 
Sbjct: 121 SSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLE-RCARTAMSSKLIHNNADFFV 179

Query: 180 SMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNP 238
            M VDAV ++   D    +IGIKK+PGG M +S  +NGVAFKKTFSYAGFEQQPKKF NP
Sbjct: 180 KMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNP 239

Query: 239 KILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI 298
           KIL LN+ELELK+EK+NAE+R+     YQ+IVDAEW +I++KL +  ++GA +VLS+L I
Sbjct: 240 KILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI 299

Query: 299 GDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN 358
           GDLATQ+FADR+IFCAGRV+ +D+ RV  A GG++Q++ +++  E LGTC  FEE Q+G+
Sbjct: 300 GDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGS 359

Query: 359 ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDV 417
           ER+N+F GCP  +T T++LRGGA+Q I E ERSLHDAIMIV+RA +N  +VAGGGA ++
Sbjct: 360 ERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEM 418
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.42
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.4
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.37
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=9.4e-95  Score=740.64  Aligned_cols=409  Identities=67%  Similarity=1.038  Sum_probs=393.9

Q ss_pred             cccccccccHHHHHHHHHHHHHHHHHhhhcCCCCccceEeeCCCCCeEEeccHHHHHhhccccCchhHHHHHHHHhcccc
Q 014593           13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE   92 (422)
Q Consensus        13 ~~~~~~~~~~~~~~~n~~a~~~l~~iv~tslGP~G~~kmi~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~   92 (422)
                      ++++++++|.+++.+||.||.+|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||++
T Consensus         1 ~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~   80 (515)
T 3iyg_H            1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAE   80 (515)
T ss_pred             CCCccccCcHHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhce
Confidence            36778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHHHhHHhcCCChHHHHHHHHHHHHHHHHHHhhhcccccCCChHHHHHHHHHHHhHhhcccccc
Q 014593           93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG  172 (422)
Q Consensus        93 ~GDGttt~vlL~~~ll~~a~~li~~gi~p~~I~~g~~~a~~~~l~~l~~~s~~v~~~~~~~~~~~l~~va~tsl~sk~~~  172 (422)
                      +||||||++|||++||++|.+++++|+||+.|++||++|++.++++|+++++|++..+..+.++.|.++|+||++||+++
T Consensus        81 ~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s  160 (515)
T 3iyg_H           81 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLIS  160 (515)
T ss_pred             eCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999999999999999999999874443223678999999999999999


Q ss_pred             chhHHHHHHHHHHHHhcCCCCCccceeeeeecCCCccceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeecccccc
Q 014593          173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE  252 (422)
Q Consensus       173 ~~~~~l~~lv~~ai~~v~~~~~~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~  252 (422)
                      .+++.|+++++||+.+++.+-|.++|+|++++|++..||++++|++|+++|.||||.+||+.++||||++++++|+++++
T Consensus       161 ~~~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k~  240 (515)
T 3iyg_H          161 QQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE  240 (515)
T ss_pred             ccHHHHHHHHHHHHHHhcccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEEccccccccc
Confidence            99999999999999999743377899999999999999999999999999999999889999999999999999999999


Q ss_pred             ccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhCCe
Q 014593          253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT  332 (422)
Q Consensus       253 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~  332 (422)
                      +.++++.++++++++++.++|++++++++++|++.|++|||++++|++.+++||+++||++++++++++|+|||++|||+
T Consensus       241 e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa~  320 (515)
T 3iyg_H          241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS  320 (515)
T ss_pred             ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EceeccCCCCCCccccceEEEEEECCEEEEEEEcCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEecC
Q 014593          333 VQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGG  412 (422)
Q Consensus       333 ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~Till~g~~~~~l~e~~~~i~dal~~~~~~~~~~~vv~GG  412 (422)
                      ++++++++++++||+|+.|++.++|+++|++|+||++++.|||+|||+|+.+++|.||+++||++++|++++++++||||
T Consensus       321 ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGG  400 (515)
T 3iyg_H          321 IQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGG  400 (515)
T ss_pred             EeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhhhc
Q 014593          413 GAIDVRFYH  421 (422)
Q Consensus       413 G~~E~~ls~  421 (422)
                      |++|+++|+
T Consensus       401 Ga~e~~~s~  409 (515)
T 3iyg_H          401 GAIEMELSK  409 (515)
T ss_pred             cHHHHHHHH
Confidence            999999986
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 1e-43
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 1e-40
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 2e-40
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 8e-40
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-35
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 5e-34
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 8e-33
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 7e-20
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 1e-19
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 1e-17
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-16
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 3e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-15
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-10
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  147 bits (373), Expect = 1e-43
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 4/171 (2%)

Query: 210 DSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSI 269
           DS ++ GV   K  ++       +   NP+I+LL+  LE K  +   +I ++    +  I
Sbjct: 1   DSCVLRGVMINKDVTHPRM---RRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 57

Query: 270 VDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329
           +  E   I+   +  +Q    VV++   I DLA  Y    ++    RV + D  R+A A 
Sbjct: 58  LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 117

Query: 330 GGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRG 379
           G  + +    + ++ +GT     E +++G+E F   + C   +  TI+LRG
Sbjct: 118 GARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.95
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.94
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.89
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.56
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.54
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.49
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.4
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.38
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.36
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.34
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.34
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 98.29
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 97.38
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 97.07
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.99
d1we3a1 255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 91.44
d1a6db1 243 Thermosome, E domain {Archaeon Thermoplasma acidop 90.99
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 88.74
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 82.44
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=100.00  E-value=1.5e-36  Score=264.29  Aligned_cols=167  Identities=26%  Similarity=0.468  Sum_probs=148.0

Q ss_pred             ceeeEeeEEEeeccCCccccCCcceeeCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014593          210 DSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGA  289 (422)
Q Consensus       210 ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~  289 (422)
                      ||++++|++|++.++++.   ||+.++||||++++++|++++++.++++.++++++++.++++|++++.+++++|++.|+
T Consensus         1 DS~li~Gvvi~k~~~~~~---m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~   77 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKP   77 (168)
T ss_dssp             CCSEEEEEEESCCCSSTT---SCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEEEEEecccCCcC---CccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            789999999999999875   79999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCccHHHHHHHHhCCceeecCCCHHHHHHHHHHhCCeEceeccCCCCCCccc-cceEEEEEECCEEEEEEEcCC
Q 014593          290 KVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCP  368 (422)
Q Consensus       290 ~lvi~~~~i~~~~~~~l~~~~I~~v~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~~g~~~~~~~~~~~  368 (422)
                      +||+|+++|++.+++||.++||++++++++++|+|||++|||++++++++++++++|+ |+.++++.+|+++|++|+||+
T Consensus        78 ~vv~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~  157 (168)
T d1gmla_          78 DVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCK  157 (168)
T ss_dssp             SEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEES
T ss_pred             ceEEEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEecC
Confidence            9999999999999999999999999999999999999999999999999999999998 577888899999999999999


Q ss_pred             CCceEEEEEec
Q 014593          369 SGRTATIVLRG  379 (422)
Q Consensus       369 ~~~~~Till~g  379 (422)
                      ++.+|||+|||
T Consensus       158 ~~~~~TIllRG  168 (168)
T d1gmla_         158 DPKACTILLRG  168 (168)
T ss_dssp             STTSCEEEEEC
T ss_pred             CCCEEEEEEeC
Confidence            99999999998
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure