Citrus Sinensis ID: 014603
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 422 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LVY1 | 420 | Tyrosine aminotransferase | yes | no | 0.988 | 0.992 | 0.610 | 1e-156 | |
| Q9FN30 | 414 | Probable aminotransferase | no | no | 0.950 | 0.968 | 0.633 | 1e-153 | |
| Q9SIV0 | 462 | S-alkyl-thiohydroximate l | no | no | 0.971 | 0.887 | 0.565 | 1e-147 | |
| Q9ST03 | 551 | Nicotianamine aminotransf | N/A | no | 0.976 | 0.747 | 0.569 | 1e-142 | |
| Q9ST02 | 461 | Nicotianamine aminotransf | N/A | no | 0.990 | 0.906 | 0.551 | 1e-139 | |
| Q67Y55 | 449 | Probable aminotransferase | no | no | 0.971 | 0.913 | 0.553 | 1e-139 | |
| Q9SK47 | 445 | Probable aminotransferase | no | no | 0.978 | 0.928 | 0.502 | 1e-127 | |
| Q9SUR6 | 422 | Cystine lyase CORI3 OS=Ar | no | no | 0.879 | 0.879 | 0.481 | 1e-103 | |
| Q8VYP2 | 424 | Probable aminotransferase | no | no | 0.950 | 0.945 | 0.450 | 1e-102 | |
| Q8QZR1 | 454 | Tyrosine aminotransferase | yes | no | 0.912 | 0.848 | 0.359 | 8e-74 |
| >sp|Q9LVY1|TAT_ARATH Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1 | Back alignment and function desciption |
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Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 255/418 (61%), Positives = 332/418 (79%), Gaps = 1/418 (0%)
Query: 6 GANG-NQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTA 64
G NG +W F ANE ++ ++ +T+R LN+L+ L+ D RP+IPLGHGDPS FPSFRT
Sbjct: 2 GENGAKRWNFGANEVVERSNSLTIRDYLNTLINCLDGGDVRPVIPLGHGDPSPFPSFRTD 61
Query: 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124
AV+AI +VRS +FN YSS+ G+ AR+A+A+YL+ DL Y++SP+DV++T GC QAIE
Sbjct: 62 QAAVEAICDAVRSTKFNNYSSSSGVPVARKAVAEYLSSDLSYQISPNDVHITAGCVQAIE 121
Query: 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT 184
++++ LA PGANILLPRP +P Y++RA LEVR+FDLLP GW+VDLD VEALAD+ T
Sbjct: 122 ILISALAIPGANILLPRPTYPMYDSRAAFCQLEVRYFDLLPENGWDVDLDGVEALADDKT 181
Query: 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244
VA+++INP NPCGNV++ QHLQKIAETA KLGI+VIADEVYDH AFG+ PFV M F +
Sbjct: 182 VAILVINPCNPCGNVFSRQHLQKIAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAEL 241
Query: 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVP 304
VPV+ LG+ISKRW VPGWRLGW+VT DP+GI++DSG V ++ + +N+S+DPATFIQGA+P
Sbjct: 242 VPVIVLGAISKRWFVPGWRLGWMVTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQGAMP 301
Query: 305 QILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 364
I+ T+EEFFS +++++ A+IC + L +IPCITCP KPEGSMF MVKLN+SLLE I+
Sbjct: 302 DIIGNTKEEFFSSKLEMVKKCAEICYEELMKIPCITCPCKPEGSMFTMVKLNFSLLEDIS 361
Query: 365 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
D++F KLAKEES+I+LPG VGLK+WLRITFAVE L +G R+K F +RH+K Q
Sbjct: 362 DDLDFCSKLAKEESMIILPGQAVGLKNWLRITFAVELELLIEGFSRLKNFTERHSKNQ 419
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Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using L-glutamate in vitro. Can convert phenylalanine to phenylpyruvate and catalyze the reverse reaction in vitro. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 5 |
| >sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1 | Back alignment and function description |
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Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/404 (63%), Positives = 319/404 (78%), Gaps = 3/404 (0%)
Query: 22 TASGITVRGVLNSLLENLNKNDT---RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA 78
T S IT++G+L+ L+E++ + + +I LG GDP+ + FRT V++ A+ S+ S
Sbjct: 7 TTSTITIKGILSLLMESITTEEDEGGKRVISLGMGDPTLYSCFRTTQVSLQAVSDSLLSN 66
Query: 79 RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138
+F+ YS TVG+ ARRAIA+YL+RDLPYKLS DDV++T GCTQAI+V L++LARP ANIL
Sbjct: 67 KFHGYSPTVGLPQARRAIAEYLSRDLPYKLSQDDVFITSGCTQAIDVALSMLARPRANIL 126
Query: 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGN 198
LPRPGFP YE A HLEVR+ DLLP GWE+DLDAVEALADENTVALV+INPGNPCGN
Sbjct: 127 LPRPGFPIYELCAKFRHLEVRYVDLLPENGWEIDLDAVEALADENTVALVVINPGNPCGN 186
Query: 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI 258
VY+YQHL KIAE+AKKLG +VIADEVY HLAFG+ PFVPMGVFGSIVPVLTLGS+SKRWI
Sbjct: 187 VYSYQHLMKIAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKRWI 246
Query: 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKI 318
VPGWRLGW VT+DP+G +D I++ K + +I PATFIQ AVP ILE+T+E FF K
Sbjct: 247 VPGWRLGWFVTTDPSGSFKDPKIIERFKKYFDILGGPATFIQAAVPTILEQTDESFFKKT 306
Query: 319 TDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 378
+ L+ ++DICCD +KEIPCI +PEGSM +MVKLN SLLE ++ D++F KLA+EES
Sbjct: 307 LNSLKNSSDICCDWIKEIPCIDSSHRPEGSMAMMVKLNLSLLEDVSDDIDFCFKLAREES 366
Query: 379 VIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
VI+LPG VGLK+WLRITFA + +++E+ R+K FY RHAK Q
Sbjct: 367 VILLPGTAVGLKNWLRITFAADATSIEEAFKRIKCFYLRHAKTQ 410
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIV0|SUR1_ARATH S-alkyl-thiohydroximate lyase SUR1 OS=Arabidopsis thaliana GN=SUR1 PE=1 SV=1 | Back alignment and function description |
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Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 232/410 (56%), Positives = 309/410 (75%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W F +++ AS +T+RGV+ L +N K+ + ++PLGHGDPS +P FRT A DA+
Sbjct: 33 WRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAV 92
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
V +RS + N Y GILPARRA+ADY+NRDLP+KL+P+D++LT GC Q IE++ LA
Sbjct: 93 VDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA 152
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
RP ANILLPRPGFP+Y+ARA +S LEVR FDLLP K WE+DL+ +EA+ADENTVA+V+IN
Sbjct: 153 RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVIN 212
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NPCGNVY++ HL+K+AETA+KLGIMVI+DEVYD FG+ PFV MG F SIVPVLTL
Sbjct: 213 PNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLA 272
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
ISK W+VPGW++GW+ +DP G+ + + ++ SIK L+++ DPAT IQ A+P ILEK +
Sbjct: 273 GISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD 332
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
+ FF+K IL+ D+ CDRLK+IPC+ CPKKPE +++ KL SL++ I D++F +
Sbjct: 333 KNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCV 392
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
KLA+EE+++ LPG +GLK+W+RIT VE LED L R+K F RHAKK
Sbjct: 393 KLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442
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C-S lyase involved in glucosinolate biosynthesis. Converts S-(alkylacetohydroximoyl)-L-cysteine to thiohydroximate. Functions in auxin homeostasis. Probably required for glucosinolate activation in response to pathogens. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ST03|NAATB_HORVU Nicotianamine aminotransferase B OS=Hordeum vulgare GN=naat-B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/416 (56%), Positives = 319/416 (76%), Gaps = 4/416 (0%)
Query: 11 QWGFKANEE---LKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVA 67
+W F ++ T + +++R + + ++ + RP++PL HGDPS FP+FRTA A
Sbjct: 131 EWNFAGAKDGVLAATGANMSIRAIRYKISASVQEKGPRPVLPLAHGDPSVFPAFRTAVEA 190
Query: 68 VDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVIL 127
DA+ +VR+ +FNCY + VG+ AR A+A++L++ +PY LS DDV+LT G TQAIEVI+
Sbjct: 191 EDAVAAAVRTGQFNCYPAGVGLPAARSAVAEHLSQGVPYMLSADDVFLTAGGTQAIEVII 250
Query: 128 TVLAR-PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186
VLA+ GANILLPRPG+P YEARA + LEVRHFDL+P KGWE+D+D++E++AD+NT A
Sbjct: 251 PVLAQTAGANILLPRPGYPNYEARAAFNRLEVRHFDLIPDKGWEIDIDSLESIADKNTTA 310
Query: 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246
+VIINP NPCG+VY+Y HL K+AE AK+LGI+VIADEVY L G+ PF+PMGVFG I P
Sbjct: 311 MVIINPNNPCGSVYSYDHLSKVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITP 370
Query: 247 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQI 306
VL++GS+SK WIVPGWRLGW+ DP ILQ++ I SI ++LN+S+DPATFIQ A+PQI
Sbjct: 371 VLSIGSLSKSWIVPGWRLGWVAVYDPRKILQETKISTSITNYLNVSTDPATFIQAALPQI 430
Query: 307 LEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSD 366
LE T+E+FF I +L+E+++IC ++KE ITCP KPEGSMFVMVKLN LLE I+ D
Sbjct: 431 LENTKEDFFKAIIGLLKESSEICYKQIKENKYITCPHKPEGSMFVMVKLNLHLLEEIDDD 490
Query: 367 MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
++F KLAKEESVI+ PG +G+ +W+RITFA PS+L+DGLGR+K+F R+ K+
Sbjct: 491 IDFCCKLAKEESVILCPGSVLGMANWVRITFACVPSSLQDGLGRIKSFCQRNKKRN 546
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Involved in biosynthesis of mugineic acid family phytosiderophores. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 0 |
| >sp|Q9ST02|NAATA_HORVU Nicotianamine aminotransferase A OS=Hordeum vulgare GN=naat-A PE=1 SV=2 | Back alignment and function description |
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Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/428 (55%), Positives = 324/428 (75%), Gaps = 10/428 (2%)
Query: 5 GGANGN------QWGFKANEE---LKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDP 55
G +NG+ +W F ++ T + ++R + + ++ ++ RP++PL HGDP
Sbjct: 29 GKSNGHAAAAAVEWNFARGKDGILATTGAKNSIRAIRYKISASVEESGPRPVLPLAHGDP 88
Query: 56 SAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL 115
S FP+FRTA A DA+ ++R+ +FNCY++ VG+ AR A+A++L++ +PYKLS DDV+L
Sbjct: 89 SVFPAFRTAVEAEDAVAAALRTGQFNCYAAGVGLPAARSAVAEHLSQGVPYKLSADDVFL 148
Query: 116 TLGCTQAIEVILTVLAR-PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174
T G TQAIEVI+ VLA+ GANILLPRPG+P YEARA + LEVRHFDL+P KGWE+D+D
Sbjct: 149 TAGGTQAIEVIIPVLAQTAGANILLPRPGYPNYEARAAFNKLEVRHFDLIPDKGWEIDID 208
Query: 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP 234
++E++AD+NT A+VIINP NPCG+VY+Y HL K+AE A+KLGI+VIADEVY L G+ P
Sbjct: 209 SLESIADKNTTAMVIINPNNPCGSVYSYDHLAKVAEVARKLGILVIADEVYGKLVLGSAP 268
Query: 235 FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSD 294
F+PMGVFG I PVL++GS+SK WIVPGWRLGW+ DP IL+ + I SI ++LN+S+D
Sbjct: 269 FIPMGVFGHIAPVLSIGSLSKSWIVPGWRLGWVAVYDPTKILEKTKISTSITNYLNVSTD 328
Query: 295 PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVK 354
PATF+Q A+P+ILE T+ +FF +I +L+E+++IC +KE ITCP KPEGSMFVMVK
Sbjct: 329 PATFVQEALPKILENTKADFFKRIIGLLKESSEICYREIKENKYITCPHKPEGSMFVMVK 388
Query: 355 LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAF 414
LN LLE I+ D++F KLAKEESVI+ PG +G+++W+RITFA PS+L+DGL R+K+F
Sbjct: 389 LNLHLLEEIHDDIDFCCKLAKEESVILCPGSVLGMENWVRITFACVPSSLQDGLERVKSF 448
Query: 415 YDRHAKKQ 422
R+ KK
Sbjct: 449 CQRNKKKN 456
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Involved in biosynthesis of mugineic acid family phytosiderophores. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 0 |
| >sp|Q67Y55|TAT1_ARATH Probable aminotransferase TAT1 OS=Arabidopsis thaliana GN=At4g28420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 227/410 (55%), Positives = 302/410 (73%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W F+ ++ AS +T+R ++ L + + + +PL+PL HGDPS +P +RT+ + +A+
Sbjct: 27 WRFRGSDNAAKASSVTMRVIVYKLFDECSLDVKKPLLPLAHGDPSVYPCYRTSILVENAV 86
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
V +RS + N Y GILPAR+A+ADY+NRDL K+ P+DV++T+GC Q IEV+L LA
Sbjct: 87 VDVLRSGKGNSYGPAAGILPARQAVADYVNRDLTNKVKPNDVFITVGCNQGIEVVLQSLA 146
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
RP ANILLPRP +P+YEARA +S LEVR FDLLP K WE+DL +EA+ADENTVA+VIIN
Sbjct: 147 RPNANILLPRPSYPHYEARAVYSGLEVRKFDLLPEKEWEIDLPGIEAMADENTVAMVIIN 206
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NPCGNVY+Y HL+K+AETAKKLGIMVI DEVY FG+ PFVPMG F SI PV+TLG
Sbjct: 207 PNNPCGNVYSYDHLKKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLG 266
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
ISK WIVPGWR+GW+ +DP GIL+ +G+V SI+ L+I+ D T +Q A+P+IL K
Sbjct: 267 GISKGWIVPGWRIGWIALNDPRGILKSTGMVQSIQQNLDITPDATTIVQAALPEILGKAN 326
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
+E F+K +L++ ++ CDRLKEIPC+ C KKPE +++ KL LLE I DM+F +
Sbjct: 327 KELFAKKNSMLKQNVELVCDRLKEIPCLVCNKKPESCTYLLTKLKLPLLEDIEDDMDFCM 386
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
KLAKEE++++LPG+ +GLK+W+RIT VE LED L R+ F RH KK
Sbjct: 387 KLAKEENLVLLPGVALGLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SK47|TAT3_ARATH Probable aminotransferase TAT3 OS=Arabidopsis thaliana GN=TAT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/414 (50%), Positives = 294/414 (71%), Gaps = 1/414 (0%)
Query: 7 ANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASV 66
AN N W FK N A+ +T+R + + +N N + ++ G+PSA +FRT
Sbjct: 11 ANANVWRFKGNGATSDAAAVTLRKLAFGMFKNCTMNSGKTILFPTPGEPSAHSNFRTCPE 70
Query: 67 AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126
A +A+ + RS N Y+ + G+ ARRA+A+YLN +LP KL +DVY+T GC QAIE++
Sbjct: 71 AEEAVAAAARSGMANSYAPSPGVFKARRAVAEYLNGELPTKLKAEDVYITGGCNQAIEIV 130
Query: 127 LTVLA-RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185
+ LA P ANILLPRPG+P+Y+ARA +S LE+R +DLLP WE++LD +EA ADENTV
Sbjct: 131 IDSLAGNPSANILLPRPGYPHYDARAVYSGLEIRKYDLLPESDWEINLDGLEAAADENTV 190
Query: 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245
A+VIINP NPCGNVYTY HL K+AE A+KLGIM+I+DEVYDH+ +G+ PF+PMG F SI
Sbjct: 191 AMVIINPNNPCGNVYTYDHLNKVAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIA 250
Query: 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQ 305
PV+TLGSISK W+ PGWR+GW+ +DPNGI +G+V +I+ FL+++ P+ +Q A+P
Sbjct: 251 PVITLGSISKGWVNPGWRVGWIAMNDPNGIFVSTGVVQAIEDFLDLTPQPSFILQEALPD 310
Query: 306 ILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS 365
ILEKT +EFF K +R ++ C+RLK+IPC+ CPKKPE ++ +KL+ S+L I +
Sbjct: 311 ILEKTPKEFFEKKIKAMRRNVELSCERLKDIPCLFCPKKPESCSYLWLKLDTSMLNNIKN 370
Query: 366 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
D +F KL EES+I++PG+ +G ++W+RI+ + S +++ R+K FYDRHA
Sbjct: 371 DFDFCTKLVSEESLILIPGVALGAENWVRISIGTDESVVQEIFDRLKGFYDRHA 424
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SUR6|CORI3_ARATH Cystine lyase CORI3 OS=Arabidopsis thaliana GN=CORI3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/374 (48%), Positives = 253/374 (67%), Gaps = 3/374 (0%)
Query: 52 HGDPSAFPS---FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKL 108
HG P P T++ A A+V +V N Y+ ++G+ A+ A+A+YLN+ LP KL
Sbjct: 39 HGKPILPPRNEILETSNTAEKAVVKAVLYGSGNAYAPSLGLAAAKSAVAEYLNQGLPKKL 98
Query: 109 SPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKG 168
+ DDV++TLGC QAIE+ + +LA+P AN+LLP PGFP+ R+ + +LEVRH++ LP K
Sbjct: 99 TADDVFMTLGCKQAIELAVDILAKPKANVLLPSPGFPWDLVRSIYKNLEVRHYNFLPEKN 158
Query: 169 WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHL 228
+E+D D+V AL DENT A+ IINP NP GN Y+ HL+++AE AK+L IMV++DEV+
Sbjct: 159 FEIDFDSVRALVDENTFAIFIINPHNPNGNTYSEAHLKQLAELAKELKIMVVSDEVFRWT 218
Query: 229 AFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF 288
FG+ PFVPMG F SIVPV+TLGSISK W VPGWR GWL D +G+ +++ ++ + + F
Sbjct: 219 LFGSNPFVPMGKFSSIVPVVTLGSISKGWKVPGWRTGWLTLHDLDGVFRNTKVLQAAQDF 278
Query: 289 LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348
L I+++P T IQ A+P ILEKT +EFF K L++ + +LK IP +TC KPE
Sbjct: 279 LQINNNPPTVIQAAIPDILEKTPQEFFDKRQSFLKDKVEFGYSKLKYIPSLTCYMKPEAC 338
Query: 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGL 408
F+ +L+ S I D +F KLAKEE+++VLPGI K+WLR + +E LED L
Sbjct: 339 TFLWTELDLSSFVDIEDDQDFCNKLAKEENLVVLPGIAFSQKNWLRHSIDMETPVLEDAL 398
Query: 409 GRMKAFYDRHAKKQ 422
R+K+F DRH+ K+
Sbjct: 399 ERLKSFCDRHSNKK 412
|
Possesses cystine lyase and tyrosine aminotransferase activities in vitro. May be required for the synthesis of homogentisate a precursor of tocopherols and plastoquinones. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VYP2|TAT4_ARATH Probable aminotransferase TAT4 OS=Arabidopsis thaliana GN=At4g23590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/408 (45%), Positives = 264/408 (64%), Gaps = 7/408 (1%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W F ++ + A+ ++ G +S + +L +P++P + T+ A A+
Sbjct: 9 WQFSGSDAAEKAAQASL-GTYSSEIFSLCDPQGKPILPPLSEEA------ETSHTAEKAV 61
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
V +V N Y+ ++G+ A+RA+A+YLNRDL KL+ DDVY+T+GC QAIE+ +++LA
Sbjct: 62 VKAVLCGTGNAYAPSIGLPVAKRAVAEYLNRDLDNKLTGDDVYMTVGCKQAIELAVSILA 121
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
+P ANILLPRPGFP+ + + HLEVR ++ +P + +E+D ++V + DENT A+ IIN
Sbjct: 122 KPKANILLPRPGFPWDMVHSIYKHLEVRRYEFIPERDFEIDFNSVREMVDENTFAIFIIN 181
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NP GN YT HL+++A A++LGIMV++DEVY FG+ PFVPMG F SIVPV+TLG
Sbjct: 182 PHNPNGNYYTEAHLKQLATLARELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLG 241
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
SISK WIVPGWR GWL D NG+ + + ++ + K FL I+S P T IQ A+P ILEKT
Sbjct: 242 SISKGWIVPGWRTGWLALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQAAIPTILEKTP 301
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
++FF K L++ D +LK IP +TC KPE F+ KL+ I D +F
Sbjct: 302 QDFFEKRGIFLKDKVDFGYSKLKNIPTLTCYMKPESCTFLWTKLDPLHFVDIEDDHDFCR 361
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
KLAKEE+++VLPGI G +WLR + +E LED R+K+F +RH+
Sbjct: 362 KLAKEENLVVLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q8QZR1|ATTY_MOUSE Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=1 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 223/392 (56%), Gaps = 7/392 (1%)
Query: 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTV 87
+R +++++ N N T +I L GDP+ F + T A+ ++ S ++N Y+ ++
Sbjct: 56 IRAIVDNMKVKPNPNKT--VISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSI 113
Query: 88 GILPARRAIADYLN-RDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPY 146
G L +R +A Y + + P L DV LT GC+QAIE+ L VLA PG NIL+PRPGF
Sbjct: 114 GYLSSREEVASYYHCPEAP--LEAKDVILTSGCSQAIELCLAVLANPGQNILIPRPGFSL 171
Query: 147 YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQ 206
Y A +EV+ ++LLP K WE+DL +E+L DE T LV+ NP NPCG+V++ +HLQ
Sbjct: 172 YRTLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQ 231
Query: 207 KIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266
KI A++ + ++ADE+Y + F + + PM + VP+L+ G ++KRW+VPGWRLGW
Sbjct: 232 KILAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAKRWLVPGWRLGW 291
Query: 267 LVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326
++ D I + I D + P T +QGA+ IL++T +EF+ L+ A
Sbjct: 292 ILIHDRRDIFGNE-IRDGLVKLSQRILGPCTIVQGALKSILQRTPQEFYQDTLSFLKSNA 350
Query: 327 DICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 386
D+C L IP + P +P G+M++MV + +D+EF +L E+SV LP
Sbjct: 351 DLCYGALSAIPGLQ-PVRPSGAMYLMVGIEMEHFPEFENDVEFTERLIAEQSVHCLPATC 409
Query: 387 VGLKDWLRITFAVEPSALEDGLGRMKAFYDRH 418
++ R+ V + + R++ F ++H
Sbjct: 410 FEYPNFFRVVITVPEVMMLEACSRIQEFCEQH 441
|
Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. Can catalyze the reverse reaction, using glutamic acid, with 2-oxoglutarate as cosubstrate (in vitro). Has no transaminase activity towards phenylalanine. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 422 | ||||||
| 224133454 | 418 | aminotransferase family protein [Populus | 0.990 | 1.0 | 0.765 | 0.0 | |
| 255553657 | 419 | tyrosine aminotransferase, putative [Ric | 0.992 | 1.0 | 0.753 | 0.0 | |
| 225446437 | 419 | PREDICTED: tyrosine aminotransferase [Vi | 0.992 | 1.0 | 0.725 | 0.0 | |
| 359485208 | 419 | PREDICTED: LOW QUALITY PROTEIN: tyrosine | 0.992 | 1.0 | 0.715 | 0.0 | |
| 224133458 | 418 | aminotransferase family protein [Populus | 0.988 | 0.997 | 0.734 | 0.0 | |
| 325516250 | 422 | tyrosine aminotransferase 2 [Solanum pen | 1.0 | 1.0 | 0.701 | 1e-179 | |
| 224133450 | 417 | aminotransferase family protein [Populus | 0.973 | 0.985 | 0.698 | 1e-178 | |
| 225446431 | 419 | PREDICTED: tyrosine aminotransferase [Vi | 0.992 | 1.0 | 0.703 | 1e-175 | |
| 225446435 | 419 | PREDICTED: tyrosine aminotransferase iso | 0.992 | 1.0 | 0.699 | 1e-174 | |
| 302143330 | 518 | unnamed protein product [Vitis vinifera] | 0.992 | 0.808 | 0.699 | 1e-173 |
| >gi|224133454|ref|XP_002328046.1| aminotransferase family protein [Populus trichocarpa] gi|222837455|gb|EEE75834.1| aminotransferase family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/422 (76%), Positives = 376/422 (89%), Gaps = 4/422 (0%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG +WGF+AN+ L T+S +TVRGVLN L +NLNK DTR ++PL HGDPSAFP
Sbjct: 1 MENGS----KKWGFQANKSLSTSSAVTVRGVLNVLQDNLNKEDTRQVMPLAHGDPSAFPC 56
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRT +VA +A+V +VRSA++N Y+ TVG+LPARR++AD+LNRDLPYKLSPDDV+LTLGCT
Sbjct: 57 FRTTTVADEAVVDAVRSAKYNHYAPTVGLLPARRSVADFLNRDLPYKLSPDDVFLTLGCT 116
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAIE+ +TVLARPGANILLPRPGFPYYEARA HSHLE RHFDL+P KGWEVDLDAVEALA
Sbjct: 117 QAIEITITVLARPGANILLPRPGFPYYEARAAHSHLEARHFDLIPEKGWEVDLDAVEALA 176
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENTVA+V+INPGNPCG+VY+YQHLQKIAETA+KLGIMVIADEVY HL FGN+PFVPMGV
Sbjct: 177 DENTVAMVVINPGNPCGSVYSYQHLQKIAETARKLGIMVIADEVYGHLTFGNSPFVPMGV 236
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGSIVPVLTLGSISKRWIVPGWR+GWLVTSDPNGILQ+SG+V+SIK LNISSDP TFIQ
Sbjct: 237 FGSIVPVLTLGSISKRWIVPGWRIGWLVTSDPNGILQESGVVESIKGCLNISSDPVTFIQ 296
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GA+PQI++ T E+FF+KI +ILRE ADIC +++++IPCIT P KPEGSMFVMVKLN S L
Sbjct: 297 GAIPQIIDNTTEDFFTKINNILREAADICYEKIQDIPCITLPHKPEGSMFVMVKLNLSSL 356
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
EGI DM+F LKLAKEESV++LPG VG+K++LRITFA+EPSALE GL R+KAFY+RHAK
Sbjct: 357 EGIGDDMDFCLKLAKEESVMILPGTAVGMKNFLRITFAIEPSALEVGLERLKAFYERHAK 416
Query: 421 KQ 422
Q
Sbjct: 417 IQ 418
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553657|ref|XP_002517869.1| tyrosine aminotransferase, putative [Ricinus communis] gi|223542851|gb|EEF44387.1| tyrosine aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/422 (75%), Positives = 369/422 (87%), Gaps = 3/422 (0%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG +WGF+ANE L A+ +TVRGVL++L NLNK D R +IPLGHGDPSAFPS
Sbjct: 1 MENG---VSTKWGFRANEGLTAAAAVTVRGVLDALNSNLNKEDERTVIPLGHGDPSAFPS 57
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
F TAS A DAIV +++SA++NCYS TVG+LPARRAIADYLN DLPY+LSPDDV++TLGCT
Sbjct: 58 FLTASAAEDAIVDALKSAKYNCYSPTVGLLPARRAIADYLNIDLPYELSPDDVFVTLGCT 117
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAIEV LTVL RPGANILLPRPGFPYY A +HLEVRHFDLLP KGWEV+ +AVEALA
Sbjct: 118 QAIEVSLTVLGRPGANILLPRPGFPYYTGIAAQTHLEVRHFDLLPEKGWEVNFEAVEALA 177
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENT A+VIINPGNPCGNVY+Y+HL+KIAETA+KLGI+VIADEVY HL FG+TPFVPMGV
Sbjct: 178 DENTAAMVIINPGNPCGNVYSYEHLKKIAETARKLGILVIADEVYAHLTFGSTPFVPMGV 237
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGS+VPVLTLGSISKRWIVPGWRLGWLV SDP GILQ++G+VDSI S LNISSDPATFIQ
Sbjct: 238 FGSVVPVLTLGSISKRWIVPGWRLGWLVLSDPKGILQETGVVDSITSCLNISSDPATFIQ 297
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GA+PQIL T+++FF KI ++L+E A++C DR+++IPCITC +KPEGSMF+M KLN S L
Sbjct: 298 GAIPQILTNTKKDFFFKINNLLQEAAELCYDRIQDIPCITCLRKPEGSMFLMAKLNLSSL 357
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
+GI DM+F LKLAKEESVIVLPGITVGLK+WLRITFA+E S LE GLGR++AFY+RHAK
Sbjct: 358 KGIEDDMDFCLKLAKEESVIVLPGITVGLKNWLRITFAIELSTLEVGLGRIRAFYERHAK 417
Query: 421 KQ 422
KQ
Sbjct: 418 KQ 419
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446437|ref|XP_002276551.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143331|emb|CBI21892.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/422 (72%), Positives = 372/422 (88%), Gaps = 3/422 (0%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG + +WGF+ N+EL A+ +T+RGVL ++ NL++ D RP+IPLGHGDPSAFP
Sbjct: 1 MENG---SKKRWGFQGNQELNMAAAVTIRGVLGKVMSNLSEEDNRPVIPLGHGDPSAFPC 57
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRT VA DAI +VRSA+FN Y+ TVG+LPARRA+A+YL+RDLPY+LSPDD+YLT+GCT
Sbjct: 58 FRTTPVAEDAIADAVRSAKFNSYAPTVGLLPARRAVAEYLSRDLPYQLSPDDIYLTIGCT 117
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAIE+++ VLARPGANILLPRPGFPYYEARA +LEVRHFDLLP +GWEVDL+AV+ALA
Sbjct: 118 QAIEIMIQVLARPGANILLPRPGFPYYEARAAADNLEVRHFDLLPEQGWEVDLEAVKALA 177
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENTVA+VI+NPGNP G+V+TY+HL+K+AETA+ LGIMVI+DEVY HLAFG+ PFVPMGV
Sbjct: 178 DENTVAMVIVNPGNPSGSVFTYEHLKKVAETARNLGIMVISDEVYGHLAFGSKPFVPMGV 237
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGSIVP++T+GSISKRW+VPGWRLGWLVT+D NGIL SG+V+SI S LNISSDPATFIQ
Sbjct: 238 FGSIVPIVTVGSISKRWVVPGWRLGWLVTNDLNGILHKSGVVESIISCLNISSDPATFIQ 297
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GA+P+ILEKT+E+FFS ILRE ADI DR+K IPCITCP+KPEGSMFVMVKLN SLL
Sbjct: 298 GAIPEILEKTKEDFFSNTISILRECADIIHDRIKGIPCITCPQKPEGSMFVMVKLNLSLL 357
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
E I+ D+EF +KL+KEESVIVLPG++VG+K+WLR+TFA++P +LEDGLGR+KAFY RHAK
Sbjct: 358 EDIDDDVEFCMKLSKEESVIVLPGVSVGMKNWLRVTFAIDPPSLEDGLGRIKAFYQRHAK 417
Query: 421 KQ 422
K+
Sbjct: 418 KE 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485208|ref|XP_003633232.1| PREDICTED: LOW QUALITY PROTEIN: tyrosine aminotransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/422 (71%), Positives = 360/422 (85%), Gaps = 3/422 (0%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENGG +WGF+ NEEL A+ IT+RGVLN ++ NLN D RP+IPLGHGDPSAF
Sbjct: 1 MENGGR---KRWGFQGNEELDKAASITIRGVLNKVMSNLNPQDHRPVIPLGHGDPSAFSC 57
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRT VA DAIV ++RS +FN Y+ VGILPARRAIA++L+ DLPYKLSPDD++LT+GC+
Sbjct: 58 FRTTPVAEDAIVDALRSRKFNSYAPAVGILPARRAIAEHLSHDLPYKLSPDDIFLTIGCS 117
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAIE+I+ VLARPGANILLPRPG+P+YE+ A +HLE RHFDLLP KGWEVDL+ V+ALA
Sbjct: 118 QAIELIIKVLARPGANILLPRPGYPFYESHAAANHLEFRHFDLLPEKGWEVDLEGVKALA 177
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENTVA+VIINPGNPCGN++T++HL+K+AETA+ LGI+VI+DEVY HLAFG P+V MG
Sbjct: 178 DENTVAMVIINPGNPCGNIFTHEHLKKVAETARMLGILVISDEVYAHLAFGGNPYVSMGA 237
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGSI PV+TLGSISKRWIVPGWRLGWLVT+DPNGIL SG+V+SI S LNISSDPATFIQ
Sbjct: 238 FGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILHKSGVVESIVSSLNISSDPATFIQ 297
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GAVPQI+EKT ++F+ KI ILRETA C D +++IPC+TCP KPEGSMFVMVKLN SLL
Sbjct: 298 GAVPQIIEKTTDDFYLKIISILRETAGTCFDGIEDIPCLTCPHKPEGSMFVMVKLNLSLL 357
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
E I D++F +KL+KEESVIV PG VG+K+WLRITFA+EP +LEDGLGR+KAFY RHAK
Sbjct: 358 EDIEDDIDFCMKLSKEESVIVFPGFAVGMKNWLRITFAIEPPSLEDGLGRIKAFYQRHAK 417
Query: 421 KQ 422
KQ
Sbjct: 418 KQ 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133458|ref|XP_002328047.1| aminotransferase family protein [Populus trichocarpa] gi|222837456|gb|EEE75835.1| aminotransferase family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/422 (73%), Positives = 358/422 (84%), Gaps = 5/422 (1%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG +W F+A++ + + + ITVRGVLN L E LNK D R +IPL HGDPSAFP
Sbjct: 1 MENGT----EKWSFQASKGMNSTASITVRGVLNRLAETLNKEDKREVIPLAHGDPSAFPC 56
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRT VA +AI +VRSA+ N Y+ TVG+LPARRA ADYLNRDLPYKLSPDDV+LTLGC
Sbjct: 57 FRTTPVADEAIFDAVRSAKNNHYAPTVGLLPARRAAADYLNRDLPYKLSPDDVFLTLGCK 116
Query: 121 QAIEVILTVLAR-PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEAL 179
QAIE+ +TVLA PGAN+LLPRPGFPYYEARA HS L+VRHFDLLP KGWEVDL+AVEAL
Sbjct: 117 QAIEIAVTVLAAIPGANVLLPRPGFPYYEARAAHSCLDVRHFDLLPEKGWEVDLEAVEAL 176
Query: 180 ADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG 239
ADENTVA+VIINPGNPCG+VY+YQHL+K+AETA+ LGIMVI+DEVY HL FG+ PFVPMG
Sbjct: 177 ADENTVAMVIINPGNPCGSVYSYQHLEKVAETARMLGIMVISDEVYGHLTFGSAPFVPMG 236
Query: 240 VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFI 299
VF S VPVLTLGSISKRWIVPGWR+GWLVT+DPNGILQDSGIV SIK +LNISSDP TFI
Sbjct: 237 VFASTVPVLTLGSISKRWIVPGWRMGWLVTNDPNGILQDSGIVASIKDYLNISSDPPTFI 296
Query: 300 QGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL 359
Q AVPQI+E T++ FFSKI +IL E ADIC ++++IPCI CP KPEGSMFVMVKLN +L
Sbjct: 297 QAAVPQIIENTKDGFFSKINNILGEAADICYGKIQDIPCIICPHKPEGSMFVMVKLNLTL 356
Query: 360 LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
LEGI+ D++F LKLAKEESV+VLPGI VG+K+WLRITFA+EPSALE G R+K F RHA
Sbjct: 357 LEGIDDDVDFCLKLAKEESVMVLPGIAVGMKNWLRITFAIEPSALEVGFERLKVFCQRHA 416
Query: 420 KK 421
K+
Sbjct: 417 KQ 418
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|325516250|gb|ADZ24703.1| tyrosine aminotransferase 2 [Solanum pennellii] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/422 (70%), Positives = 357/422 (84%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG +W FK NE+L + S +TVR VLN L+ ++ DTRP IPLGHGDPSAFP
Sbjct: 1 MENGTTTGRRRWNFKENEKLVSVSDLTVRSVLNKLMCCVDPADTRPTIPLGHGDPSAFPC 60
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRT +A DAI +VRSA FN YSSTVGILPARRA+A+YL++DLPYKLSPDD+YLT GC
Sbjct: 61 FRTTPIAEDAISDAVRSAMFNGYSSTVGILPARRAVAEYLSQDLPYKLSPDDIYLTSGCG 120
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAIE++L LARP ANILLP PGFPYYEA + +E+RHF+LLP K WEVDL+AVE+LA
Sbjct: 121 QAIEILLNALARPNANILLPTPGFPYYEAWGGFTQMEMRHFNLLPEKEWEVDLNAVESLA 180
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENTVA+VIINPGNPCGNVY+ +HL+K+AETA+KLGI+VI+DEVY HLAFG+ PFVPMG+
Sbjct: 181 DENTVAMVIINPGNPCGNVYSEEHLKKVAETARKLGILVISDEVYAHLAFGSKPFVPMGI 240
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGSI PV+TLGSISKRWIVPGWRLGWLVT+DPNGIL++ G +DSI +LNIS+DPATFIQ
Sbjct: 241 FGSIAPVVTLGSISKRWIVPGWRLGWLVTNDPNGILKEHGDIDSIMGYLNISTDPATFIQ 300
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GA+PQIL +T+++FFSKI ++LRE ADIC +R+K+IPCITCP KP+GSMF+MV+L+ +LL
Sbjct: 301 GAIPQILHETKDDFFSKIVNMLREDADICYERIKDIPCITCPSKPQGSMFLMVQLHLNLL 360
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
E I D++F KLAKEES+I+LPG+ VGLK+WLRITFA EPS LEDG R+ AFY RHAK
Sbjct: 361 EDIEDDLDFCAKLAKEESLIILPGVAVGLKNWLRITFACEPSYLEDGFQRLNAFYKRHAK 420
Query: 421 KQ 422
KQ
Sbjct: 421 KQ 422
|
Source: Solanum pennellii Species: Solanum pennellii Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133450|ref|XP_002328045.1| aminotransferase family protein [Populus trichocarpa] gi|222837454|gb|EEE75833.1| aminotransferase family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 287/411 (69%), Positives = 352/411 (85%)
Query: 11 QWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDA 70
+W + NE L + ++RG L L ++L+K+D RP++PL HGDPSAF FRT+ AVDA
Sbjct: 7 KWIIRGNELLDETAATSIRGYLIMLYDHLDKDDQRPVVPLSHGDPSAFACFRTSPEAVDA 66
Query: 71 IVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL 130
IVH+V+SA FN Y+ T+GILPARRA+A+YL+ DLPY LS DD+YLT+GCTQ+IEVIL+ L
Sbjct: 67 IVHAVQSAEFNSYAPTIGILPARRAVAEYLSADLPYNLSADDIYLTVGCTQSIEVILSAL 126
Query: 131 ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII 190
ARPGANILLPRPG+P YE+RA+ S LEVRHFDL+P KGWEVDL++VEALADENT A+VII
Sbjct: 127 ARPGANILLPRPGYPLYESRASFSKLEVRHFDLIPEKGWEVDLESVEALADENTAAIVII 186
Query: 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250
+PGNPCGNV++YQHL+K+AETA+KLGI VIADEVY H+AFG+ P+VPMG FGSIVPVL+L
Sbjct: 187 SPGNPCGNVFSYQHLKKVAETARKLGIFVIADEVYGHIAFGSNPYVPMGEFGSIVPVLSL 246
Query: 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKT 310
GSISKRWIVPGWRLGW+ T DPNGIL+ GIVDSIKS+ NISS+PATF+Q A+PQI EKT
Sbjct: 247 GSISKRWIVPGWRLGWIATCDPNGILKKYGIVDSIKSYFNISSNPATFVQAAIPQIFEKT 306
Query: 311 EEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFA 370
+E+FFSK +I+RE ADIC ++ KEIPC+TCP KP+GSMF MVKLN SLLE I+ DM+F
Sbjct: 307 KEDFFSKTINIMREAADICYEKTKEIPCVTCPHKPDGSMFAMVKLNLSLLEDISDDMDFC 366
Query: 371 LKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
LKLA+EESVI+LPG+ VGLK+WLRITF++EP +LE GL RMKAF RH++K
Sbjct: 367 LKLAREESVIILPGVAVGLKNWLRITFSIEPQSLEQGLDRMKAFCQRHSRK 417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446431|ref|XP_002275047.1| PREDICTED: tyrosine aminotransferase [Vitis vinifera] gi|302143327|emb|CBI21888.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 297/422 (70%), Positives = 350/422 (82%), Gaps = 3/422 (0%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG +WGF+ N+ L AS ITVRGVL ++ NLN D RP+I LG GDPSAF S
Sbjct: 1 MENGAA---ERWGFRGNQVLHKASSITVRGVLGKVISNLNPQDRRPVITLGQGDPSAFSS 57
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRT+ A +AIV +VRS +FN YS VG+L ARRAIA+YL+ DLPYKLSPDDVYLT+GC
Sbjct: 58 FRTSPEAEEAIVDAVRSRKFNSYSPDVGVLTARRAIAEYLSADLPYKLSPDDVYLTIGCA 117
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAI++I+ VLA PGANILLPRPG+ YEA A +HLE R FDLLP KGWEVDL+ V+ALA
Sbjct: 118 QAIKLIIKVLALPGANILLPRPGYALYEAHAAANHLEFRRFDLLPEKGWEVDLEGVKALA 177
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENTVA+VIINPGNPCGNV+T+QHL+K+AETA+ LGI+VIADEVY HL FG+ P+VPMGV
Sbjct: 178 DENTVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGSNPYVPMGV 237
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGSI PV+TLGSISKRWIVPGWRLGWLVT+DPNGIL SG+V++I S LNI +DPATFI
Sbjct: 238 FGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGVVETIVSSLNICTDPATFIH 297
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GAVPQI+EKT ++FFS+I +LR+TADIC D L +IPCITCP KPEG+M VMV LN SLL
Sbjct: 298 GAVPQIIEKTTDDFFSRIIGLLRKTADICFDGLADIPCITCPHKPEGAMSVMVNLNVSLL 357
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
E I DM+F +KL+KEESVI+LPG TVG+++WLRITFA EP +LEDGLGR+KAF RHAK
Sbjct: 358 EDIEDDMDFCVKLSKEESVIILPGFTVGMENWLRITFATEPPSLEDGLGRIKAFCQRHAK 417
Query: 421 KQ 422
KQ
Sbjct: 418 KQ 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446435|ref|XP_002276464.1| PREDICTED: tyrosine aminotransferase isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/422 (69%), Positives = 348/422 (82%), Gaps = 3/422 (0%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG +WGF+ N+ L A+ ITVRGVL ++ NLN D RP+I LG GDPSAF
Sbjct: 1 MENGAA---ERWGFRGNQVLDKAASITVRGVLRKVISNLNPQDRRPVITLGQGDPSAFSC 57
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRTA A +AIV +VRS F+ Y VG+LPARRAIA+YL+ DLPYKLSPDDVYLT+GC
Sbjct: 58 FRTAPEAEEAIVDAVRSREFDSYPPDVGVLPARRAIAEYLSTDLPYKLSPDDVYLTVGCG 117
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAIE+I+ VLARPGANILLPRPG+ +YEA A +HLE R FDLLP K WEVDL+ V+ALA
Sbjct: 118 QAIELIIKVLARPGANILLPRPGYAFYEALAAANHLEFRRFDLLPEKVWEVDLEGVKALA 177
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENTVA+VIINPGNPCGNV+T+QHL+K+AETA+ LGI+VIADEVY HL FG+ PFVPMGV
Sbjct: 178 DENTVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGSNPFVPMGV 237
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGSI PV+TLGSISKRWIVPGWRLGWLVT+DPNGIL SGIV++I S+LNI +DP +FIQ
Sbjct: 238 FGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGIVETIVSYLNICADPTSFIQ 297
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GAVPQI+EKT ++FFS+I +L +TADIC D L +IPCITCP KPEG+M VMVKLN SLL
Sbjct: 298 GAVPQIIEKTTDDFFSRIISLLGKTADICFDGLADIPCITCPHKPEGAMSVMVKLNVSLL 357
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
E I+ DM+F +KL+KEESVI+L G VG+K+WLRITFA EP LEDG+GR+KAF RHAK
Sbjct: 358 EDIDDDMDFCMKLSKEESVIILAGFAVGMKNWLRITFATEPPFLEDGIGRIKAFCQRHAK 417
Query: 421 KQ 422
KQ
Sbjct: 418 KQ 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143330|emb|CBI21891.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/422 (69%), Positives = 348/422 (82%), Gaps = 3/422 (0%)
Query: 1 MENGGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPS 60
MENG +WGF+ N+ L A+ ITVRGVL ++ NLN D RP+I LG GDPSAF
Sbjct: 100 MENGAA---ERWGFRGNQVLDKAASITVRGVLRKVISNLNPQDRRPVITLGQGDPSAFSC 156
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
FRTA A +AIV +VRS F+ Y VG+LPARRAIA+YL+ DLPYKLSPDDVYLT+GC
Sbjct: 157 FRTAPEAEEAIVDAVRSREFDSYPPDVGVLPARRAIAEYLSTDLPYKLSPDDVYLTVGCG 216
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
QAIE+I+ VLARPGANILLPRPG+ +YEA A +HLE R FDLLP K WEVDL+ V+ALA
Sbjct: 217 QAIELIIKVLARPGANILLPRPGYAFYEALAAANHLEFRRFDLLPEKVWEVDLEGVKALA 276
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
DENTVA+VIINPGNPCGNV+T+QHL+K+AETA+ LGI+VIADEVY HL FG+ PFVPMGV
Sbjct: 277 DENTVAMVIINPGNPCGNVFTHQHLKKVAETARMLGILVIADEVYGHLVFGSNPFVPMGV 336
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
FGSI PV+TLGSISKRWIVPGWRLGWLVT+DPNGIL SGIV++I S+LNI +DP +FIQ
Sbjct: 337 FGSITPVITLGSISKRWIVPGWRLGWLVTNDPNGILCKSGIVETIVSYLNICADPTSFIQ 396
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
GAVPQI+EKT ++FFS+I +L +TADIC D L +IPCITCP KPEG+M VMVKLN SLL
Sbjct: 397 GAVPQIIEKTTDDFFSRIISLLGKTADICFDGLADIPCITCPHKPEGAMSVMVKLNVSLL 456
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
E I+ DM+F +KL+KEESVI+L G VG+K+WLRITFA EP LEDG+GR+KAF RHAK
Sbjct: 457 EDIDDDMDFCMKLSKEESVIILAGFAVGMKNWLRITFATEPPFLEDGIGRIKAFCQRHAK 516
Query: 421 KQ 422
KQ
Sbjct: 517 KQ 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 422 | ||||||
| TAIR|locus:2158926 | 420 | AT5G36160 [Arabidopsis thalian | 0.988 | 0.992 | 0.610 | 6.1e-142 | |
| TAIR|locus:2154714 | 414 | TAT7 "tyrosine aminotransferas | 0.950 | 0.968 | 0.633 | 1.2e-138 | |
| TAIR|locus:2046056 | 462 | SUR1 "SUPERROOT 1" [Arabidopsi | 0.981 | 0.896 | 0.562 | 2e-134 | |
| UNIPROTKB|Q9ST03 | 551 | naat-B "Nicotianamine aminotra | 0.973 | 0.745 | 0.575 | 1.5e-131 | |
| UNIPROTKB|Q9ST02 | 461 | naat-A "Nicotianamine aminotra | 0.992 | 0.908 | 0.556 | 2.5e-129 | |
| TAIR|locus:2121407 | 449 | AT4G28420 [Arabidopsis thalian | 0.971 | 0.913 | 0.553 | 4e-129 | |
| TAIR|locus:2121382 | 447 | AT4G28410 [Arabidopsis thalian | 0.990 | 0.935 | 0.528 | 1.3e-125 | |
| TAIR|locus:2047441 | 445 | TAT3 "tyrosine aminotransferas | 0.978 | 0.928 | 0.502 | 1.4e-119 | |
| TAIR|locus:2128459 | 422 | CORI3 "CORONATINE INDUCED 1" [ | 0.957 | 0.957 | 0.457 | 1.6e-95 | |
| TAIR|locus:2128434 | 424 | AT4G23590 [Arabidopsis thalian | 0.950 | 0.945 | 0.453 | 2.3e-94 |
| TAIR|locus:2158926 AT5G36160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 255/418 (61%), Positives = 332/418 (79%)
Query: 6 GANG-NQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTA 64
G NG +W F ANE ++ ++ +T+R LN+L+ L+ D RP+IPLGHGDPS FPSFRT
Sbjct: 2 GENGAKRWNFGANEVVERSNSLTIRDYLNTLINCLDGGDVRPVIPLGHGDPSPFPSFRTD 61
Query: 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124
AV+AI +VRS +FN YSS+ G+ AR+A+A+YL+ DL Y++SP+DV++T GC QAIE
Sbjct: 62 QAAVEAICDAVRSTKFNNYSSSSGVPVARKAVAEYLSSDLSYQISPNDVHITAGCVQAIE 121
Query: 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT 184
++++ LA PGANILLPRP +P Y++RA LEVR+FDLLP GW+VDLD VEALAD+ T
Sbjct: 122 ILISALAIPGANILLPRPTYPMYDSRAAFCQLEVRYFDLLPENGWDVDLDGVEALADDKT 181
Query: 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244
VA+++INP NPCGNV++ QHLQKIAETA KLGI+VIADEVYDH AFG+ PFV M F +
Sbjct: 182 VAILVINPCNPCGNVFSRQHLQKIAETACKLGILVIADEVYDHFAFGDKPFVSMAEFAEL 241
Query: 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVP 304
VPV+ LG+ISKRW VPGWRLGW+VT DP+GI++DSG V ++ + +N+S+DPATFIQGA+P
Sbjct: 242 VPVIVLGAISKRWFVPGWRLGWMVTLDPHGIMKDSGFVQTLINVVNMSTDPATFIQGAMP 301
Query: 305 QILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 364
I+ T+EEFFS +++++ A+IC + L +IPCITCP KPEGSMF MVKLN+SLLE I+
Sbjct: 302 DIIGNTKEEFFSSKLEMVKKCAEICYEELMKIPCITCPCKPEGSMFTMVKLNFSLLEDIS 361
Query: 365 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
D++F KLAKEES+I+LPG VGLK+WLRITFAVE L +G R+K F +RH+K Q
Sbjct: 362 DDLDFCSKLAKEESMIILPGQAVGLKNWLRITFAVELELLIEGFSRLKNFTERHSKNQ 419
|
|
| TAIR|locus:2154714 TAT7 "tyrosine aminotransferase 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
Identities = 256/404 (63%), Positives = 319/404 (78%)
Query: 22 TASGITVRGVLNSLLENLNKNDT---RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA 78
T S IT++G+L+ L+E++ + + +I LG GDP+ + FRT V++ A+ S+ S
Sbjct: 7 TTSTITIKGILSLLMESITTEEDEGGKRVISLGMGDPTLYSCFRTTQVSLQAVSDSLLSN 66
Query: 79 RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138
+F+ YS TVG+ ARRAIA+YL+RDLPYKLS DDV++T GCTQAI+V L++LARP ANIL
Sbjct: 67 KFHGYSPTVGLPQARRAIAEYLSRDLPYKLSQDDVFITSGCTQAIDVALSMLARPRANIL 126
Query: 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGN 198
LPRPGFP YE A HLEVR+ DLLP GWE+DLDAVEALADENTVALV+INPGNPCGN
Sbjct: 127 LPRPGFPIYELCAKFRHLEVRYVDLLPENGWEIDLDAVEALADENTVALVVINPGNPCGN 186
Query: 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI 258
VY+YQHL KIAE+AKKLG +VIADEVY HLAFG+ PFVPMGVFGSIVPVLTLGS+SKRWI
Sbjct: 187 VYSYQHLMKIAESAKKLGFLVIADEVYGHLAFGSKPFVPMGVFGSIVPVLTLGSLSKRWI 246
Query: 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKI 318
VPGWRLGW VT+DP+G +D I++ K + +I PATFIQ AVP ILE+T+E FF K
Sbjct: 247 VPGWRLGWFVTTDPSGSFKDPKIIERFKKYFDILGGPATFIQAAVPTILEQTDESFFKKT 306
Query: 319 TDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 378
+ L+ ++DICCD +KEIPCI +PEGSM +MVKLN SLLE ++ D++F KLA+EES
Sbjct: 307 LNSLKNSSDICCDWIKEIPCIDSSHRPEGSMAMMVKLNLSLLEDVSDDIDFCFKLAREES 366
Query: 379 VIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
VI+LPG VGLK+WLRITFA + +++E+ R+K FY RHAK Q
Sbjct: 367 VILLPGTAVGLKNWLRITFAADATSIEEAFKRIKCFYLRHAKTQ 410
|
|
| TAIR|locus:2046056 SUR1 "SUPERROOT 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
Identities = 234/416 (56%), Positives = 311/416 (74%)
Query: 8 NGNQ--WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTAS 65
NG W F +++ AS +T+RGV+ L +N K+ + ++PLGHGDPS +P FRT
Sbjct: 27 NGQSSVWRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCI 86
Query: 66 VAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125
A DA+V +RS + N Y GILPARRA+ADY+NRDLP+KL+P+D++LT GC Q IE+
Sbjct: 87 EAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEI 146
Query: 126 ILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185
+ LARP ANILLPRPGFP+Y+ARA +S LEVR FDLLP K WE+DL+ +EA+ADENTV
Sbjct: 147 VFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTV 206
Query: 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245
A+V+INP NPCGNVY++ HL+K+AETA+KLGIMVI+DEVYD FG+ PFV MG F SIV
Sbjct: 207 AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIV 266
Query: 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQ 305
PVLTL ISK W+VPGW++GW+ +DP G+ + + ++ SIK L+++ DPAT IQ A+P
Sbjct: 267 PVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPA 326
Query: 306 ILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS 365
ILEK ++ FF+K IL+ D+ CDRLK+IPC+ CPKKPE +++ KL SL++ I
Sbjct: 327 ILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKD 386
Query: 366 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
D++F +KLA+EE+++ LPG +GLK+W+RIT VE LED L R+K F RHAKK
Sbjct: 387 DIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442
|
|
| UNIPROTKB|Q9ST03 naat-B "Nicotianamine aminotransferase B" [Hordeum vulgare (taxid:4513)] | Back alignment and assigned GO terms |
|---|
Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
Identities = 239/415 (57%), Positives = 321/415 (77%)
Query: 11 QWGFK-ANEELKTASG--ITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVA 67
+W F A + + A+G +++R + + ++ + RP++PL HGDPS FP+FRTA A
Sbjct: 131 EWNFAGAKDGVLAATGANMSIRAIRYKISASVQEKGPRPVLPLAHGDPSVFPAFRTAVEA 190
Query: 68 VDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVIL 127
DA+ +VR+ +FNCY + VG+ AR A+A++L++ +PY LS DDV+LT G TQAIEVI+
Sbjct: 191 EDAVAAAVRTGQFNCYPAGVGLPAARSAVAEHLSQGVPYMLSADDVFLTAGGTQAIEVII 250
Query: 128 TVLARP-GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186
VLA+ GANILLPRPG+P YEARA + LEVRHFDL+P KGWE+D+D++E++AD+NT A
Sbjct: 251 PVLAQTAGANILLPRPGYPNYEARAAFNRLEVRHFDLIPDKGWEIDIDSLESIADKNTTA 310
Query: 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246
+VIINP NPCG+VY+Y HL K+AE AK+LGI+VIADEVY L G+ PF+PMGVFG I P
Sbjct: 311 MVIINPNNPCGSVYSYDHLSKVAEVAKRLGILVIADEVYGKLVLGSAPFIPMGVFGHITP 370
Query: 247 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQI 306
VL++GS+SK WIVPGWRLGW+ DP ILQ++ I SI ++LN+S+DPATFIQ A+PQI
Sbjct: 371 VLSIGSLSKSWIVPGWRLGWVAVYDPRKILQETKISTSITNYLNVSTDPATFIQAALPQI 430
Query: 307 LEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSD 366
LE T+E+FF I +L+E+++IC ++KE ITCP KPEGSMFVMVKLN LLE I+ D
Sbjct: 431 LENTKEDFFKAIIGLLKESSEICYKQIKENKYITCPHKPEGSMFVMVKLNLHLLEEIDDD 490
Query: 367 MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
++F KLAKEESVI+ PG +G+ +W+RITFA PS+L+DGLGR+K+F R+ K+
Sbjct: 491 IDFCCKLAKEESVILCPGSVLGMANWVRITFACVPSSLQDGLGRIKSFCQRNKKR 545
|
|
| UNIPROTKB|Q9ST02 naat-A "Nicotianamine aminotransferase A" [Hordeum vulgare (taxid:4513)] | Back alignment and assigned GO terms |
|---|
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 236/424 (55%), Positives = 323/424 (76%)
Query: 3 NG-GGANGNQWGF-KANEELKTASGI--TVRGVLNSLLENLNKNDTRPLIPLGHGDPSAF 58
NG A +W F + + + +G ++R + + ++ ++ RP++PL HGDPS F
Sbjct: 32 NGHAAAAAVEWNFARGKDGILATTGAKNSIRAIRYKISASVEESGPRPVLPLAHGDPSVF 91
Query: 59 PSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118
P+FRTA A DA+ ++R+ +FNCY++ VG+ AR A+A++L++ +PYKLS DDV+LT G
Sbjct: 92 PAFRTAVEAEDAVAAALRTGQFNCYAAGVGLPAARSAVAEHLSQGVPYKLSADDVFLTAG 151
Query: 119 CTQAIEVILTVLARP-GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177
TQAIEVI+ VLA+ GANILLPRPG+P YEARA + LEVRHFDL+P KGWE+D+D++E
Sbjct: 152 GTQAIEVIIPVLAQTAGANILLPRPGYPNYEARAAFNKLEVRHFDLIPDKGWEIDIDSLE 211
Query: 178 ALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237
++AD+NT A+VIINP NPCG+VY+Y HL K+AE A+KLGI+VIADEVY L G+ PF+P
Sbjct: 212 SIADKNTTAMVIINPNNPCGSVYSYDHLAKVAEVARKLGILVIADEVYGKLVLGSAPFIP 271
Query: 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPAT 297
MGVFG I PVL++GS+SK WIVPGWRLGW+ DP IL+ + I SI ++LN+S+DPAT
Sbjct: 272 MGVFGHIAPVLSIGSLSKSWIVPGWRLGWVAVYDPTKILEKTKISTSITNYLNVSTDPAT 331
Query: 298 FIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357
F+Q A+P+ILE T+ +FF +I +L+E+++IC +KE ITCP KPEGSMFVMVKLN
Sbjct: 332 FVQEALPKILENTKADFFKRIIGLLKESSEICYREIKENKYITCPHKPEGSMFVMVKLNL 391
Query: 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417
LLE I+ D++F KLAKEESVI+ PG +G+++W+RITFA PS+L+DGL R+K+F R
Sbjct: 392 HLLEEIHDDIDFCCKLAKEESVILCPGSVLGMENWVRITFACVPSSLQDGLERVKSFCQR 451
Query: 418 HAKK 421
+ KK
Sbjct: 452 NKKK 455
|
|
| TAIR|locus:2121407 AT4G28420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
Identities = 227/410 (55%), Positives = 302/410 (73%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W F+ ++ AS +T+R ++ L + + + +PL+PL HGDPS +P +RT+ + +A+
Sbjct: 27 WRFRGSDNAAKASSVTMRVIVYKLFDECSLDVKKPLLPLAHGDPSVYPCYRTSILVENAV 86
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
V +RS + N Y GILPAR+A+ADY+NRDL K+ P+DV++T+GC Q IEV+L LA
Sbjct: 87 VDVLRSGKGNSYGPAAGILPARQAVADYVNRDLTNKVKPNDVFITVGCNQGIEVVLQSLA 146
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
RP ANILLPRP +P+YEARA +S LEVR FDLLP K WE+DL +EA+ADENTVA+VIIN
Sbjct: 147 RPNANILLPRPSYPHYEARAVYSGLEVRKFDLLPEKEWEIDLPGIEAMADENTVAMVIIN 206
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NPCGNVY+Y HL+K+AETAKKLGIMVI DEVY FG+ PFVPMG F SI PV+TLG
Sbjct: 207 PNNPCGNVYSYDHLKKVAETAKKLGIMVITDEVYCQTIFGDKPFVPMGEFSSITPVITLG 266
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
ISK WIVPGWR+GW+ +DP GIL+ +G+V SI+ L+I+ D T +Q A+P+IL K
Sbjct: 267 GISKGWIVPGWRIGWIALNDPRGILKSTGMVQSIQQNLDITPDATTIVQAALPEILGKAN 326
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
+E F+K +L++ ++ CDRLKEIPC+ C KKPE +++ KL LLE I DM+F +
Sbjct: 327 KELFAKKNSMLKQNVELVCDRLKEIPCLVCNKKPESCTYLLTKLKLPLLEDIEDDMDFCM 386
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
KLAKEE++++LPG+ +GLK+W+RIT VE LED L R+ F RH KK
Sbjct: 387 KLAKEENLVLLPGVALGLKNWIRITIGVEAQMLEDALERLNGFCKRHLKK 436
|
|
| TAIR|locus:2121382 AT4G28410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 221/418 (52%), Positives = 306/418 (73%)
Query: 5 GGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTA 64
GG G+ W FK N+ K A+ ++++G L L + +K+ + ++PLGHGDPS +P F+T+
Sbjct: 28 GGIGGSVWRFKGNKAAKEAASVSMKGTLARLFDCCSKDVKKTILPLGHGDPSVYPCFQTS 87
Query: 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124
A +A+V S+RS N Y+ VGILPARRA+A+YLNRDLP+K+ DD+++T+GC Q IE
Sbjct: 88 VDAEEAVVESLRSGAANSYAPGVGILPARRAVANYLNRDLPHKIHSDDIFMTVGCCQGIE 147
Query: 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT 184
++ LA P ANILLP +P Y + A HS +E+R ++LLP WE+DL VEA+ADENT
Sbjct: 148 TMIHALAGPKANILLPTLIYPLYNSHAIHSLVEIRKYNLLPDLDWEIDLQGVEAMADENT 207
Query: 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244
+A+VI+NP NPCGNVYTY+HL+K+AE A+KLGIMVI+DEVY+ +G FVPMG+F SI
Sbjct: 208 IAVVIMNPHNPCGNVYTYEHLKKVAEVARKLGIMVISDEVYNQTIYGENKFVPMGIFSSI 267
Query: 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVP 304
PV+TLGSISK W+VPGWR+GW+ +DP + + + +V+SIK L+IS DP+T +Q A+P
Sbjct: 268 TPVVTLGSISKGWLVPGWRIGWIAMNDPKNVFKTTRVVESIKEHLDISPDPSTILQFALP 327
Query: 305 QILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 364
ILEKT++EFF K IL + D D LK+IPC+TCPKKPE +++ KL+ SLLE I
Sbjct: 328 NILEKTKKEFFEKNNSILSQNVDFAFDALKDIPCLTCPKKPESCTYLVTKLDLSLLEDIT 387
Query: 365 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
+D +F +KLA+EE+++ LPG +GLK+W+R + VE S LED R+K F+ RH K Q
Sbjct: 388 NDFDFCMKLAQEENLVFLPGEVLGLKNWVRFSIGVERSMLEDAFMRLKGFFARHTKTQ 445
|
|
| TAIR|locus:2047441 TAT3 "tyrosine aminotransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
Identities = 208/414 (50%), Positives = 294/414 (71%)
Query: 7 ANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASV 66
AN N W FK N A+ +T+R + + +N N + ++ G+PSA +FRT
Sbjct: 11 ANANVWRFKGNGATSDAAAVTLRKLAFGMFKNCTMNSGKTILFPTPGEPSAHSNFRTCPE 70
Query: 67 AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126
A +A+ + RS N Y+ + G+ ARRA+A+YLN +LP KL +DVY+T GC QAIE++
Sbjct: 71 AEEAVAAAARSGMANSYAPSPGVFKARRAVAEYLNGELPTKLKAEDVYITGGCNQAIEIV 130
Query: 127 LTVLA-RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185
+ LA P ANILLPRPG+P+Y+ARA +S LE+R +DLLP WE++LD +EA ADENTV
Sbjct: 131 IDSLAGNPSANILLPRPGYPHYDARAVYSGLEIRKYDLLPESDWEINLDGLEAAADENTV 190
Query: 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245
A+VIINP NPCGNVYTY HL K+AE A+KLGIM+I+DEVYDH+ +G+ PF+PMG F SI
Sbjct: 191 AMVIINPNNPCGNVYTYDHLNKVAEMARKLGIMIISDEVYDHVVYGDKPFIPMGKFASIA 250
Query: 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQ 305
PV+TLGSISK W+ PGWR+GW+ +DPNGI +G+V +I+ FL+++ P+ +Q A+P
Sbjct: 251 PVITLGSISKGWVNPGWRVGWIAMNDPNGIFVSTGVVQAIEDFLDLTPQPSFILQEALPD 310
Query: 306 ILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS 365
ILEKT +EFF K +R ++ C+RLK+IPC+ CPKKPE ++ +KL+ S+L I +
Sbjct: 311 ILEKTPKEFFEKKIKAMRRNVELSCERLKDIPCLFCPKKPESCSYLWLKLDTSMLNNIKN 370
Query: 366 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
D +F KL EES+I++PG+ +G ++W+RI+ + S +++ R+K FYDRHA
Sbjct: 371 DFDFCTKLVSEESLILIPGVALGAENWVRISIGTDESVVQEIFDRLKGFYDRHA 424
|
|
| TAIR|locus:2128459 CORI3 "CORONATINE INDUCED 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 188/411 (45%), Positives = 268/411 (65%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W F +E K A+ ++ G S L L +P++P P T++ A A+
Sbjct: 9 WQFSGSEAAKDAAAASL-GSYTSALYALCDPHGKPILP-----PRN-EILETSNTAEKAV 61
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
V +V N Y+ ++G+ A+ A+A+YLN+ LP KL+ DDV++TLGC QAIE+ + +LA
Sbjct: 62 VKAVLYGSGNAYAPSLGLAAAKSAVAEYLNQGLPKKLTADDVFMTLGCKQAIELAVDILA 121
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
+P AN+LLP PGFP+ R+ + +LEVRH++ LP K +E+D D+V AL DENT A+ IIN
Sbjct: 122 KPKANVLLPSPGFPWDLVRSIYKNLEVRHYNFLPEKNFEIDFDSVRALVDENTFAIFIIN 181
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NP GN Y+ HL+++AE AK+L IMV++DEV+ FG+ PFVPMG F SIVPV+TLG
Sbjct: 182 PHNPNGNTYSEAHLKQLAELAKELKIMVVSDEVFRWTLFGSNPFVPMGKFSSIVPVVTLG 241
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
SISK W VPGWR GWL D +G+ +++ ++ + + FL I+++P T IQ A+P ILEKT
Sbjct: 242 SISKGWKVPGWRTGWLTLHDLDGVFRNTKVLQAAQDFLQINNNPPTVIQAAIPDILEKTP 301
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
+EFF K L++ + +LK IP +TC KPE F+ +L+ S I D +F
Sbjct: 302 QEFFDKRQSFLKDKVEFGYSKLKYIPSLTCYMKPEACTFLWTELDLSSFVDIEDDQDFCN 361
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
KLAKEE+++VLPGI K+WLR + +E LED L R+K+F DRH+ K+
Sbjct: 362 KLAKEENLVVLPGIAFSQKNWLRHSIDMETPVLEDALERLKSFCDRHSNKK 412
|
|
| TAIR|locus:2128434 AT4G23590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 185/408 (45%), Positives = 266/408 (65%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W F ++ + A+ ++ G +S + +L +P++P P + + T+ A A+
Sbjct: 9 WQFSGSDAAEKAAQASL-GTYSSEIFSLCDPQGKPILP-----PLSEEA-ETSHTAEKAV 61
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
V +V N Y+ ++G+ A+RA+A+YLNRDL KL+ DDVY+T+GC QAIE+ +++LA
Sbjct: 62 VKAVLCGTGNAYAPSIGLPVAKRAVAEYLNRDLDNKLTGDDVYMTVGCKQAIELAVSILA 121
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
+P ANILLPRPGFP+ + + HLEVR ++ +P + +E+D ++V + DENT A+ IIN
Sbjct: 122 KPKANILLPRPGFPWDMVHSIYKHLEVRRYEFIPERDFEIDFNSVREMVDENTFAIFIIN 181
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NP GN YT HL+++A A++LGIMV++DEVY FG+ PFVPMG F SIVPV+TLG
Sbjct: 182 PHNPNGNYYTEAHLKQLATLARELGIMVVSDEVYRWSVFGSNPFVPMGKFSSIVPVITLG 241
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
SISK WIVPGWR GWL D NG+ + + ++ + K FL I+S P T IQ A+P ILEKT
Sbjct: 242 SISKGWIVPGWRTGWLALHDLNGVFRSTKVLKAAKEFLEITSKPPTVIQAAIPTILEKTP 301
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
++FF K L++ D +LK IP +TC KPE F+ KL+ I D +F
Sbjct: 302 QDFFEKRGIFLKDKVDFGYSKLKNIPTLTCYMKPESCTFLWTKLDPLHFVDIEDDHDFCR 361
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
KLAKEE+++VLPGI G +WLR + +E LED R+K+F +RH+
Sbjct: 362 KLAKEENLVVLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSFCERHS 409
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ST02 | NAATA_HORVU | 2, ., 6, ., 1, ., 8, 0 | 0.5514 | 0.9905 | 0.9067 | N/A | no |
| Q8QZR1 | ATTY_MOUSE | 2, ., 6, ., 1, ., 5 | 0.3596 | 0.9123 | 0.8480 | yes | no |
| Q54K95 | ATTY_DICDI | 2, ., 6, ., 1, ., 5 | 0.3446 | 0.8957 | 0.9064 | yes | no |
| Q9LVY1 | TAT_ARATH | 2, ., 6, ., 1, ., 5 | 0.6100 | 0.9881 | 0.9928 | yes | no |
| P17735 | ATTY_HUMAN | 2, ., 6, ., 1, ., 5 | 0.3447 | 0.9502 | 0.8832 | yes | no |
| P04694 | ATTY_RAT | 2, ., 6, ., 1, ., 5 | 0.3458 | 0.9715 | 0.9030 | yes | no |
| Q58CZ9 | ATTY_BOVIN | 2, ., 6, ., 1, ., 5 | 0.3596 | 0.9123 | 0.8612 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 422 | |||
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 0.0 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 0.0 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 0.0 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 0.0 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 0.0 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 1e-114 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 1e-92 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 3e-81 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 5e-74 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 1e-58 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-49 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 3e-48 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 1e-42 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 6e-41 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 2e-38 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 2e-35 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 6e-34 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 1e-33 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 1e-32 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 8e-31 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 9e-30 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 3e-29 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 3e-28 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 3e-28 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 2e-27 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 2e-27 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 4e-25 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 5e-25 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 5e-24 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 9e-23 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 3e-22 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 6e-22 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 7e-22 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 6e-21 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 1e-20 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 1e-20 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 4e-20 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 4e-20 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 6e-20 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 4e-19 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 6e-19 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 2e-18 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 2e-18 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 2e-18 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 3e-18 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 2e-17 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 5e-17 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 3e-16 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 6e-16 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 1e-15 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 2e-15 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 2e-15 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 4e-15 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 8e-15 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 1e-14 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 4e-14 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 5e-14 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 1e-13 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 2e-13 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 3e-13 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 1e-12 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 2e-12 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 2e-12 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 2e-11 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 2e-10 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-10 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 2e-09 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 2e-09 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 3e-09 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 5e-09 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 6e-09 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 2e-08 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 2e-08 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 1e-07 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 1e-07 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-07 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 2e-07 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 4e-07 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 8e-07 | |
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 9e-07 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 2e-06 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 5e-06 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 6e-06 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 6e-06 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 7e-06 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 8e-06 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 1e-05 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 4e-05 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 6e-05 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 8e-05 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 1e-04 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 1e-04 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 2e-04 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 2e-04 | |
| PRK00451 | 447 | PRK00451, PRK00451, glycine dehydrogenase subunit | 3e-04 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 0.001 | |
| COG2873 | 426 | COG2873, MET17, O-acetylhomoserine sulfhydrylase [ | 0.001 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 0.001 | |
| PLN02994 | 153 | PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl | 0.002 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 0.002 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 0.002 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 0.003 | |
| PRK06084 | 425 | PRK06084, PRK06084, O-acetylhomoserine aminocarbox | 0.003 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 716 bits (1851), Expect = 0.0
Identities = 283/428 (66%), Positives = 350/428 (81%), Gaps = 7/428 (1%)
Query: 1 MENGGGANGN-----QWGFKANE-ELKTASGITVRGVLNSLLENLNKNDT-RPLIPLGHG 53
ME GGG G +W F+ L A +++R VLN + ++ RP++PLGHG
Sbjct: 1 MEGGGGGGGGGHATARWRFERANAALAAAGALSIRAVLNRVKACVDAGGGPRPVLPLGHG 60
Query: 54 DPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDV 113
DPSAFP FRTA A DA+ ++RS ++N YS+ VG+LPARRAIA+YL+RDLPY+LS DD+
Sbjct: 61 DPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDI 120
Query: 114 YLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173
YLT GC QAIE+I++VLA+PGANILLPRPG+P YEARA S LEVRHFDLLP +GWEVDL
Sbjct: 121 YLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDL 180
Query: 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT 233
+ VEALADENTVA+VIINP NPCG+VY+Y+HL KIAETA+KLGI+VIADEVYDHL FG+
Sbjct: 181 EGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK 240
Query: 234 PFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS 293
PFVPMGVFG + PVLTLGSISKRW+VPGWRLGW+ T DPNGIL+++ +VDSI+++LNIS+
Sbjct: 241 PFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNIST 300
Query: 294 DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMV 353
DPATF+QGA+PQI+ T+EEFF+K +L+ETADIC +++KEI CITCP KPEGSMFVMV
Sbjct: 301 DPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMV 360
Query: 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413
KL+ S L GI DM+F KLAKEESV+VLPG +G+K+WLRITFA++P +LEDGL R+K+
Sbjct: 361 KLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKS 420
Query: 414 FYDRHAKK 421
F RHAK
Sbjct: 421 FCLRHAKL 428
|
Length = 430 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 630 bits (1626), Expect = 0.0
Identities = 275/403 (68%), Positives = 322/403 (79%), Gaps = 1/403 (0%)
Query: 20 LKTAS-GITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA 78
LKT ++ + L EN N++D R I G GDPS F FRT ++A DAIV +VRSA
Sbjct: 6 LKTEPPSYSIDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSA 65
Query: 79 RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138
+FN Y+ T GILPARRAIADYL+ DLPY+LSPDDVYLTLGC A E+I+ VLARP ANIL
Sbjct: 66 KFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANIL 125
Query: 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGN 198
LPRPGFP E A HLE+RHFDLLP KGWEVDLDAVEA+ADENT+A+VIINPGNPCG+
Sbjct: 126 LPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGS 185
Query: 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI 258
VY+Y+HL KIAETA+KLGI+VIADEVY H+ FG+ PFVPMG+F SIVPV+TLGSISKRW+
Sbjct: 186 VYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWM 245
Query: 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKI 318
+PGW LGWLVT DP+G+LQ I DSIK LN + P TFIQ A+P+ILEKT E+FFSK
Sbjct: 246 IPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKT 305
Query: 319 TDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 378
+ILR C D+LKEIPCI CP+K EG+ F +VKLN LLE I DMEF LKLAKEES
Sbjct: 306 INILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEES 365
Query: 379 VIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
+I+LPG+TVGLK+WLRITFAVE S+LEDGLGR+K+F RHAKK
Sbjct: 366 LIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408
|
Length = 409 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 629 bits (1623), Expect = 0.0
Identities = 273/402 (67%), Positives = 336/402 (83%), Gaps = 1/402 (0%)
Query: 22 TASGITVRGVLNSLLENL-NKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF 80
T IT++G+L+ L+E++ ++ + + +I LG GDP+A+ F T VA +A+V +++S +F
Sbjct: 7 TTKTITIKGILSLLMESIDDEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF 66
Query: 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140
N Y+ TVG+ ARRAIA+YL+RDLPYKLS DDV++T GCTQAI+V L++LARPGANILLP
Sbjct: 67 NGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLP 126
Query: 141 RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVY 200
RPGFP YE A HLEVR+ DLLP KGWEVDLDAVEALAD+NTVALVIINPGNPCGNVY
Sbjct: 127 RPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVY 186
Query: 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP 260
+YQHL+KIAETA+KL I+VIADEVY HLAFG+ PFVPMGVFGSIVPVLTLGS+SKRWIVP
Sbjct: 187 SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP 246
Query: 261 GWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITD 320
GWRLGW VT+DP+G +D IV+ IK + +I PATFIQ AVP ILE+T+E FF K +
Sbjct: 247 GWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTIN 306
Query: 321 ILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI 380
IL++++DICCDR+KEIPCITCP KPEGSM VMVKLN SLLE I+ D++F KLA+EESVI
Sbjct: 307 ILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVI 366
Query: 381 VLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
+LPG VGLK+WLRITFA +PS+LE+ LGR+K+FY RH+K Q
Sbjct: 367 ILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ 408
|
Length = 409 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 602 bits (1554), Expect = 0.0
Identities = 215/408 (52%), Positives = 288/408 (70%), Gaps = 5/408 (1%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W FK ++ +R ++++L N +P+IPL HGDPS F + RT A +A+
Sbjct: 1 WNFKGSDHSNKTVN-PIRAIVDNLKVKPNPE--KPVIPLSHGDPSVFGNLRTDPEAEEAV 57
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
++RS +FN Y+ +VG L AR A+A+YL+ DLP KL+ DDV LT GC+QAIE+ + LA
Sbjct: 58 KDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA 117
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
PGANIL+PRPGFP Y+ RA S LEVR +DLLP K WE+DLD +E+LADE TVA+V+IN
Sbjct: 118 NPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLESLADEKTVAIVVIN 177
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NPCG+V++ HLQKIAE A+KLGI +IADE+Y H+ FG+ PF+PM F SIVPVL+LG
Sbjct: 178 PSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLG 237
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
ISKRW+VPGWRLGW++ DP+GI +D+ ++ +K+ L PAT +QGA+P ILE T
Sbjct: 238 GISKRWVVPGWRLGWIIIHDPHGIFRDT-VLQGLKNLLQRILGPATIVQGALPDILENTP 296
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
+EFF +L+ A++C + LK+IP + CP KPEG+M++MVKL L I D++F
Sbjct: 297 QEFFDGKISVLKSNAELCYEELKDIPGLVCP-KPEGAMYLMVKLELELFPEIKDDVDFCE 355
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
KLA+EESVI LPG GL +W+RIT V S LE+ R+K F +RHA
Sbjct: 356 KLAREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCERHA 403
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 518 bits (1334), Expect = 0.0
Identities = 232/410 (56%), Positives = 309/410 (75%)
Query: 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAI 71
W F +++ AS +T+RGV+ L +N K+ + ++PLGHGDPS +P FRT A DA+
Sbjct: 33 WRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAV 92
Query: 72 VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131
V +RS + N Y GILPARRA+ADY+NRDLP+KL+P+D++LT GC Q IE++ LA
Sbjct: 93 VDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA 152
Query: 132 RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191
RP ANILLPRPGFP+Y+ARA +S LEVR FDLLP K WE+DL+ +EA+ADENTVA+V+IN
Sbjct: 153 RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVIN 212
Query: 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251
P NPCGNVY++ HL+K+AETA+KLGIMVI+DEVYD FG+ PFV MG F SIVPVLTL
Sbjct: 213 PNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLA 272
Query: 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE 311
ISK W+VPGW++GW+ +DP G+ + + ++ SIK L+++ DPAT IQ A+P ILEK +
Sbjct: 273 GISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD 332
Query: 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
+ FF+K IL+ D+ CDRLK+IPC+ CPKKPE +++ KL SL++ I D++F +
Sbjct: 333 KNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCV 392
Query: 372 KLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421
KLA+EE+++ LPG +GLK+W+RIT VE LED L R+K F RHAKK
Sbjct: 393 KLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAKK 442
|
Length = 462 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 340 bits (873), Expect = e-114
Identities = 147/378 (38%), Positives = 216/378 (57%), Gaps = 4/378 (1%)
Query: 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLN 101
N +P+I L GDP+ F + T + A+ S+ S ++N Y+ TVG L AR AIA Y
Sbjct: 28 NPEKPVIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYY- 86
Query: 102 RDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHF 161
+ + DDV L GC+ AIE+ + LA G NIL+PRPGFP Y A +EV+ +
Sbjct: 87 HNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYRTLAESMGIEVKLY 146
Query: 162 DLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIA 221
+LLP K WE+DL +E+L DE T ALV+ NP NPCG+V++ QHL++I A++ + +IA
Sbjct: 147 NLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIA 206
Query: 222 DEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281
DE+Y + F F P+ S VP+L+ G ++KRW+VPGWRLGW++ D GIL+D I
Sbjct: 207 DEIYGDMVFSGATFEPVASLSSNVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRD--I 264
Query: 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITC 341
D + P T +QGA+P IL +T +E+F +L A +C L +P +
Sbjct: 265 RDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLQ- 323
Query: 342 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEP 401
P P G+M++MV + +D+EF +L E+SV LPG + R+ V
Sbjct: 324 PVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLIAEQSVFCLPGSCFEYPGFFRVVLTVPV 383
Query: 402 SALEDGLGRMKAFYDRHA 419
+E+ R++ F +RH
Sbjct: 384 VMMEEACSRIQEFCERHY 401
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 285 bits (730), Expect = 1e-92
Identities = 135/396 (34%), Positives = 211/396 (53%), Gaps = 10/396 (2%)
Query: 32 LNSLLENLNKN-DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGIL 90
L ++ +N + + +I L GDP+ + T ++ A+V +V S N Y TVG
Sbjct: 19 LRTVTDNAKPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSP 78
Query: 91 PARRAIADYLNRDLPYK------LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGF 144
AR A+A Y +K + D+V L G + AI + LT L G NIL+P PGF
Sbjct: 79 EAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGF 138
Query: 145 PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204
P+YE +E+R ++ P K WE DLD + L D+ T AL++ NP NPCG+ ++ +H
Sbjct: 139 PHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKH 198
Query: 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264
++ I ++L + +I+DE+Y + F F + F + VP + LG +K +VPGWRL
Sbjct: 199 VEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRL 258
Query: 265 GWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRE 324
GWL+ DP+G D +D +K + P + +Q A+ + L T +E +I L E
Sbjct: 259 GWLLLVDPHGNGGD--FLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEE 316
Query: 325 TADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384
A + + + E ++ P GSMF+M +L+ I SD+EF KL +EE+V VLPG
Sbjct: 317 GAMVLYNHIGECIGLSP-TMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPG 375
Query: 385 ITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
+ + R+T + L + + R+KAF +RH K
Sbjct: 376 EIFHMPGFTRLTISRPVEVLREAVERIKAFCERHKK 411
|
Length = 412 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 3e-81
Identities = 108/369 (29%), Positives = 175/369 (47%), Gaps = 22/369 (5%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
I L G+P F ++A+ + A Y G+ R AIA++L R
Sbjct: 1 IDLSIGEPD----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVD 56
Query: 108 LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK 167
+ P+++ +T G +A+ ++L L PG +L+P P +P YEA A + EV L
Sbjct: 57 VPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEG 116
Query: 168 GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227
G+ +DL+ +EA T L + NP NP G V + + L+++AE AKK GI++I+DE Y
Sbjct: 117 GFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAE 176
Query: 228 LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS 287
L + P + + + V+ L S SK + +PG R+G+L+ +++ +K
Sbjct: 177 LVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-------ELLERLKK 229
Query: 288 FL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346
L +S P+T Q A L EE ++ + R D + LKE+ + KP
Sbjct: 230 LLPYTTSGPSTLSQAAAAAAL-DDGEEHLEELRERYRRRRDALLEALKELGPLVVV-KPS 287
Query: 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--LKDWLRITFAVEPSAL 404
G F+ + L D EF +L E V+V PG G + ++R++FA L
Sbjct: 288 GGFFLWLDLP------EGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEEL 341
Query: 405 EDGLGRMKA 413
E+ L R+
Sbjct: 342 EEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 5e-74
Identities = 102/382 (26%), Positives = 182/382 (47%), Gaps = 23/382 (6%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
+I L G+P F T ++A + ++ + Y+ + GI R AIA+ R
Sbjct: 28 EDVIDLSIGEPD----FPTPEHIIEAAIEALEEGGTH-YTPSAGIPELREAIAEKYKRRY 82
Query: 105 PYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163
+ P+ ++ +T G +A+ + L PG +L+P PG+P YEA + + L
Sbjct: 83 GLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPL 142
Query: 164 L-PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
G++ DL+ +EA T A+++ +P NP G VY+ + L+ I E A++ I++I+D
Sbjct: 143 DEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202
Query: 223 EVYDHLAFGNTPFVPMG-VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281
E+Y+ L + + + G+ +T+ S SK + + GWR+GW+V ++
Sbjct: 203 EIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE-ELIAA--- 258
Query: 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCDRLKEIPCIT 340
+ +KS+L T Q A L + E ++ + RE D+ + L EI ++
Sbjct: 259 LRKLKSYLTSC--APTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLS 316
Query: 341 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITF 397
K PEG+ ++ K+ + EFA KL +E V V+PG G + ++R++
Sbjct: 317 VVKPPEGAFYLFPKIP-----ELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSL 371
Query: 398 AVEPSALEDGLGRMKAFYDRHA 419
A LE+ L R+ F +
Sbjct: 372 ATSEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-58
Identities = 107/381 (28%), Positives = 178/381 (46%), Gaps = 34/381 (8%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
R +I LG G+P F T +A + ++ Y+ GI R AIA L RD
Sbjct: 31 RDVISLGAGEPD----FDTPEHIKEAAIEALD-DGKTKYTPAAGIPELREAIAAKLKRDN 85
Query: 105 PYKLSPDDVYLTLGCTQAI-EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163
P V +T G QA+ + +L PG +++P P + Y +
Sbjct: 86 GLDYDPSQVIVTTGAKQALYNAFMALL-DPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPT 144
Query: 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223
G+++ ++ +EA T AL++ +P NP G VY+ + L+ IA+ A + I V++DE
Sbjct: 145 GEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDE 204
Query: 224 VYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278
+Y+ L + F + S+ P +T+ SK + + GWRLG+
Sbjct: 205 IYEKLVYDGAEFTSI---ASLSPELRDRTITVNGFSKAYAMTGWRLGYAA---------- 251
Query: 279 SGIVDSIKSFLNI----SSDPATFIQ-GAVPQILEKTEEEFFSKITDILRETADICCDRL 333
G + IK+ + +S+P + Q AV + ++ ++ E D+ D L
Sbjct: 252 -GPKELIKAMSKLQSHSTSNPTSIAQYAAVAAL--NGPQDEVEEMRQAFEERRDLMVDGL 308
Query: 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL 393
EIP + CP KPEG+ +V ++ L + I +EFA L +E V V+PGI G ++
Sbjct: 309 NEIPGLECP-KPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYV 367
Query: 394 RITFAVEPSALEDGLGRMKAF 414
R+++A LE+GL R++ F
Sbjct: 368 RLSYATSLEDLEEGLERIERF 388
|
Length = 393 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 3e-49
Identities = 89/366 (24%), Positives = 144/366 (39%), Gaps = 35/366 (9%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
I LG + T A ++ N Y T G+ R A+A +L R
Sbjct: 1 TDKINLGSNEYLGDSG--TLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSP 58
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFD 162
KL + + A L L R PG IL+P P +P Y + EV +
Sbjct: 59 VLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYP 118
Query: 163 LLPAKGWEVDLDAVEALADENTVALVII---NPGNPCGNVYTYQHLQKIAETAKKLGIMV 219
L + + +D DA+EA E T ++ +P NP G V T + L+K+ + AK+ I++
Sbjct: 119 LYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILL 178
Query: 220 IADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278
+ DE Y FG+ V + +L +GS SK + + GWR+G+++ +
Sbjct: 179 LVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAA------ 232
Query: 279 SGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEE--EFFSKITDILRETADICCDRLK 334
++ ++ SS Q A L ++ ++E D D L+
Sbjct: 233 --VISQLRKLARPFYSSTHL---QAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLE 287
Query: 335 EI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 392
+ + F++ L+ + A L +E V V PG + G W
Sbjct: 288 AAGLSVL----PSQAGFFLLTGLDPEA------ALALAQVLLEEVGVYVTPGSSFGGPGW 337
Query: 393 LRITFA 398
LRIT A
Sbjct: 338 LRITVA 343
|
Length = 357 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-48
Identities = 107/379 (28%), Positives = 170/379 (44%), Gaps = 18/379 (4%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
+I L GDP F F+ +A +++ N Y + G+ R AI R
Sbjct: 32 VIRLNIGDPVKF-DFQPPEHMKEAYCRAIKEGH-NYYGPSEGLPELREAIVKREKRKNGV 89
Query: 107 KLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166
++PDDV +T T+A+++I L PG IL+P P +P Y + +
Sbjct: 90 DITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEE 149
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
+GW+ D+D + E T A+ +INP NP G +Y + L++I + A + + VI+DE+YD
Sbjct: 150 EGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYD 209
Query: 227 HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286
+ + V G VPV+ + +SK + GWRLG++ DP G L + + ++I
Sbjct: 210 LMTY-EGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAE--VREAID 266
Query: 287 SFLNISSDPATFIQGAVPQILEKTE---EEFFSKITDILRETADICCDRLKEIPCITCPK 343
I P T Q A L EE+ K L+E D RL EIP I+
Sbjct: 267 KLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKK----LKERRDYIYKRLNEIPGISTT- 321
Query: 344 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-LKDW-LRITFAVEP 401
KP+G+ ++ ++ + D EF L + E V+ + G G R+ F
Sbjct: 322 KPQGAFYIFPRIEEGPWK---DDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPV 378
Query: 402 SALEDGLGRMKAFYDRHAK 420
LE+ + R + F
Sbjct: 379 EILEEAMDRFEEFMRERLG 397
|
Length = 398 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 1e-42
Identities = 103/387 (26%), Positives = 184/387 (47%), Gaps = 30/387 (7%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
++ L G+P+ F F + ++ ++ +A+ YS + G+ AR+AI Y +
Sbjct: 35 ILKLNIGNPAPF-GFEAPDEILRDVIRNLPTAQ--GYSDSKGLFSARKAIMQYYQQKGIP 91
Query: 107 KLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166
+ DD+Y+ G ++ I + + L G +L+P P +P + A + S + H+
Sbjct: 92 DVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEE 151
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
GW DLD + + T A+VIINP NP G VY+ + L++I E A++ +++ ADE+YD
Sbjct: 152 AGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYD 211
Query: 227 HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD--SGIVDS 284
+ + + + + +T +SK + V G+R+GW+V S P + G+ D
Sbjct: 212 KILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGL-DM 270
Query: 285 IKSFLNISSDPATF-IQGAV--PQILEKTEEEFFSKITDI------LRETADICCDRLKE 335
+ S ++ PA IQ A+ Q I ++ L E D + L
Sbjct: 271 LASMRLCANVPAQHAIQTALGGYQ-----------SINELILPGGRLYEQRDRAWELLNA 319
Query: 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK--DWL 393
IP ++C KP+G+++ KL+ + I+ D +F L L +E V+++ G D
Sbjct: 320 IPGVSC-VKPKGALYAFPKLDPKVYP-IHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHF 377
Query: 394 RITFAVEPSALEDGLGRMKAFYDRHAK 420
RI LE+ +GR+ F + +
Sbjct: 378 RIVTLPRVDDLEEAIGRIGRFLSGYRQ 404
|
Length = 404 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 6e-41
Identities = 107/383 (27%), Positives = 172/383 (44%), Gaps = 37/383 (9%)
Query: 44 TRP-LIPL--GHGD-PSAFPSF-RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIAD 98
R ++PL G D P+ P F R A A A+ F Y+ +GI R A+A
Sbjct: 22 GREGVLPLWFGESDLPT--PDFIRDA--AAAALA---DGETF--YTHNLGIPELREALAR 72
Query: 99 YLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEV 158
Y++R P+ + +T QA+ + L PG ++ P +P A V
Sbjct: 73 YVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARV 132
Query: 159 RHFDLLP-AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI 217
L GW +DLD + A T AL I +P NP G + L+ I ++ G+
Sbjct: 133 VCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGL 192
Query: 218 MVIADEVYDHLAFGNTPFVPMGVFGSIVP----VLTLGSISKRWIVPGWRLGWLVTSDPN 273
++ADEVY+ L + P F I ++ + S SK W + GWRLGWLV P
Sbjct: 193 WIVADEVYERLYYAPGGRAPS--FLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA--PP 248
Query: 274 GILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333
+ Q K +S A F+Q A L++ E+F +++ LR + D D L
Sbjct: 249 ALGQVLE-----KLIEYNTSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDAL 302
Query: 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KD 391
+ +P + KP+G+M+ + + G+ + A +L E + + PG G +
Sbjct: 303 RALPGVEVA-KPDGAMYAFFR-----IPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEG 356
Query: 392 WLRITFAVEPSALEDGLGRMKAF 414
+LR FA +P+ L++ + R++ F
Sbjct: 357 FLRWCFARDPARLDEAVERLRRF 379
|
Length = 382 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 99/403 (24%), Positives = 187/403 (46%), Gaps = 25/403 (6%)
Query: 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC--YSS 85
VRG + + T ++ L G+P+ F FRT D +V+ + + YS
Sbjct: 130 VRGPVVDEANRMEAAGTH-ILKLNIGNPAPF-GFRTP----DEVVYDMAQQLTDTEGYSD 183
Query: 86 TVGILPARRAIADYLN-RDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGF 144
+ G+ AR+AI Y + LP + DD+Y G ++ I + ++ L G +L+P P +
Sbjct: 184 SKGLFSARKAIMQYAQLKGLP-NVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDY 242
Query: 145 PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204
P + A + H+ W D+D + + T A+VIINP NP G +Y +
Sbjct: 243 PLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREV 302
Query: 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264
LQ+I + A++ +++ +DE+YD L + + +T +SK ++ G+R+
Sbjct: 303 LQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRI 362
Query: 265 GWLVTSDPNGILQD--SGIVDSIKSFLNISSDPA-TFIQGAVP--QILEKTEEEFFSKIT 319
GW++ S I +D G+ + + + S+ PA + +Q A+ Q ++
Sbjct: 363 GWMILSGNKRIAKDYIEGL-NMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVP-----G 416
Query: 320 DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 379
+ E ++ + L IP I+ KP+ + ++ K++ I+ D +FAL L ++ V
Sbjct: 417 GRVYEQRELVYNALNAIPGISA-VKPKAAFYIFPKIDVKKFN-IHDDEQFALDLLHDKKV 474
Query: 380 IVLPGITVGLK--DWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
+++ G D R+ + LED + R+ F+ + +
Sbjct: 475 LIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRLADFFSYYRQ 517
|
Length = 517 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 93/345 (26%), Positives = 163/345 (47%), Gaps = 42/345 (12%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP 142
YS + GI R A A Y + + PD++ +T G ++AI + + PG IL+P P
Sbjct: 62 YSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEP 120
Query: 143 GFPYYEARATHSHLEVR--------HFDLLPAKGWEVDLDAVEALADENTVALVIINPGN 194
+ Y AT + +++ F L P+K + +E L T A++I NPGN
Sbjct: 121 FYANYNGFATSAGVKIVPVTTKIEEGFHL-PSK------EEIEKLITPKTKAILISNPGN 173
Query: 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSI 253
P G VYT + L+ +AE AKK + +I+DEVY + + + V+ + S+
Sbjct: 174 PTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSV 233
Query: 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEE 313
SKR+ G R+G L++ + ++ + P T Q +L+ T E
Sbjct: 234 SKRYSACGARIGCLISKNKE-------LIAAAMKLCQARLSPPTLEQIGAAALLD-TPES 285
Query: 314 FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL 373
+F ++ + ++ DI + L +IP + C KP+G+ +++ KL +++ +FA L
Sbjct: 286 YFDEVREEYKKRRDILYEELNKIPGVVCE-KPKGAFYIIAKLPVD-----DAE-DFAKWL 338
Query: 374 AKE-----ESVIVLPG----ITVGL-KDWLRITFAVEPSALEDGL 408
+ E+V+V P T GL K+ +RI + + L+ +
Sbjct: 339 LTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAM 383
|
Length = 397 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 6e-34
Identities = 93/373 (24%), Positives = 169/373 (45%), Gaps = 38/373 (10%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR-PGANILLPR 141
Y+ + G R+A+A ++ R P D++LT G + I+++L +L P +++P
Sbjct: 111 YTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPI 170
Query: 142 PGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNP 195
P +P Y A T + + L KGW +D + +E ++ ALV+INPGNP
Sbjct: 171 PQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNP 230
Query: 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVY-DHLAFGNTPFVPM--------GVFGSIVP 246
G V T +++I + + GI+++ADEVY +++ G PF+ + + V
Sbjct: 231 TGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVE 290
Query: 247 VLTLGSISKRWIVP-GWRLGW--LVTSDPNGILQDSGIVDSIKSFL--NISSDPATFIQG 301
+++ S SK I G R G+ L P Q I L N+ T +
Sbjct: 291 LVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQ---IYKLASINLCSNVVGQLMTGLMC 347
Query: 302 AVPQILEKTEEEF---FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVK---- 354
P+ + + + I L+ A++ D L +I ++C + EG+M+ +
Sbjct: 348 NPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC-QPVEGAMYAFPRIELP 406
Query: 355 ---LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD---WLRITFAVEPSALEDGL 408
+ + G+ D+ + L+L + ++V+PG G K RIT +E+ +
Sbjct: 407 EKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMV 466
Query: 409 GRMKAFYDRHAKK 421
++K F++ KK
Sbjct: 467 KKIKEFHESFMKK 479
|
Length = 481 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-33
Identities = 98/405 (24%), Positives = 167/405 (41%), Gaps = 38/405 (9%)
Query: 22 TASGITVRGVLNSLLENLNKNDTRPLIPLGHG--DPSAFP--SFRTASVAVDAIVHSVRS 77
SG VR L + D +I G DPS FP + R A V + +
Sbjct: 66 PPSGRPVRLELLKPSDPELLEDDPSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLA 125
Query: 78 ARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANI 137
+ Y T G+ R AIA YL P+ + +T G QA++++L +L PG +
Sbjct: 126 LQ---YGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTV 182
Query: 138 LLPRPGFPYYEARATHSHLEVRHFDL-LPAKGWEVDLDAVEALADENTVALVIINP--GN 194
L+ P Y A L R + + G D +A+E + V + P N
Sbjct: 183 LVEDPT--YPGALQALEALGARVIPVPVDEDGI--DPEALEEALAQWKPKAVYVTPTFQN 238
Query: 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS 254
P G + + + + A+K +++I D+ Y L + P P+ + V+ LGS S
Sbjct: 239 PTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFS 298
Query: 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS-DPATFIQGAVP-QILEKTEE 312
K + PG RLG++V +++ + + P++ Q A+ +L +
Sbjct: 299 KT-LAPGLRLGYVVAP--------PELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYD 349
Query: 313 EFFSKITDILRETADICCDRLKEI-PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
++ D + L E P + +PEG +F+ ++L EGI++ A
Sbjct: 350 RHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELP----EGIDARELLA- 404
Query: 372 KLAKEESVIVLPGITVGLKD-----WLRITFA-VEPSALEDGLGR 410
A E+ V+V P + D LR++F+ +E+G+ R
Sbjct: 405 -AALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKR 448
|
Length = 459 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 84/337 (24%), Positives = 165/337 (48%), Gaps = 27/337 (8%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP 142
Y+ + G + I Y +++ +++ T+G + + L + PG +++ P
Sbjct: 62 YTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEP 121
Query: 143 GF-PYYE----ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCG 197
F PY + LE D G+++++ +EAL T A+++ +P NP G
Sbjct: 122 YFTPYKDQIEMVGGKPIILETYEED-----GFQINVKKLEALITSKTKAIILNSPNNPTG 176
Query: 198 NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKR 256
V++ + L++IA+ A + + +I+DEVYD +F FVPM + +T GS SK
Sbjct: 177 AVFSKETLEEIAKIAIEYDLFIISDEVYDGFSF-YEDFVPMATLAGMPERTITFGSFSKD 235
Query: 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFS 316
+ + GWR+G+++ P+ I++ + I++ F S P + A+ + K +
Sbjct: 236 FAMTGWRIGYVIA--PDYIIETAKIINEGICF----SAPTISQRAAIYAL--KHRDTIVP 287
Query: 317 KITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 376
I + ++ + R++ IP ++ P+GS++ + + + G++S +EF KL KE
Sbjct: 288 LIKEEFQKRLEYAYKRIESIPNLSL-HPPKGSIYAFINIKKT---GLSS-VEFCEKLLKE 342
Query: 377 ESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411
V+V+PG G + ++R+ V LE+ R+
Sbjct: 343 AHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRI 379
|
Length = 384 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 8e-31
Identities = 104/375 (27%), Positives = 174/375 (46%), Gaps = 33/375 (8%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
I LG G FP+F +A + ++R + N Y+ G+ AIA+ +D
Sbjct: 57 INLGQG----FPNFDGPDFVKEAAIQAIRDGK-NQYARGFGVPELNSAIAERFKKDTGLV 111
Query: 108 LSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166
+ P+ +V +T GCT+AI + L PG ++L P + YEA + + +++ L P
Sbjct: 112 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPP 171
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
+ V D ++A T A++I P NP G ++T + L+ IA K+ ++ DEVYD
Sbjct: 172 D-FAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYD 230
Query: 227 HLAFGNTPFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN---GILQDSGIV 282
LAF + M G +T+ S+ K + + GW++GW + + P+ G+ Q
Sbjct: 231 KLAF-EGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAI-APPHLTWGVRQ----- 283
Query: 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP 342
SFL ++ AT +Q A L + E ++ ++ DI + LKE+ P
Sbjct: 284 --AHSFLTFAT--ATPMQWAAVAAL-RAPESYYEELKRDYSAKKDILVEGLKEVGFKVYP 338
Query: 343 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITF 397
G+ FVMV +++ G +D+ F L +E V +P L K+ +R F
Sbjct: 339 --SSGTYFVMV--DHTPF-GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAF 393
Query: 398 AVEPSALEDGLGRMK 412
+ L + RMK
Sbjct: 394 CKDEETLRAAVERMK 408
|
Length = 413 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 9e-30
Identities = 99/387 (25%), Positives = 176/387 (45%), Gaps = 23/387 (5%)
Query: 29 RGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVG 88
R + L E +K + +I LG G+P F T +A ++ + Y+ G
Sbjct: 19 RSKIRELFERASKMEN--VISLGIGEPD----FDTPKNIKEAAKRALDEG-WTHYTPNAG 71
Query: 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE 148
I R AIA+Y + + D+V +T G +A + L G +++P P F Y
Sbjct: 72 IPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYV 131
Query: 149 ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKI 208
A + + L ++ D D + L + T +VI P NP G + + I
Sbjct: 132 EDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAI 191
Query: 209 AETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268
A+ A+ I +++DE Y+H + PM + +L S SK + + GWRLG+++
Sbjct: 192 ADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILA-NSFSKTFAMTGWRLGFVI 250
Query: 269 TSDPNGILQDSGIVDSIKSFLNISSDPATFIQGA-VPQILEKTEEEFFSKITDILRETAD 327
P + I D IK I + A+F+Q A + + K + ++ E
Sbjct: 251 A--PEQV-----IKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRK 303
Query: 328 ICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 387
+ RLKE+P I +P+G+ +V ++ + G++S+ +FA L ++ V+V+PG
Sbjct: 304 LVLKRLKEMPHIK-VFEPKGAFYVFANIDET---GMSSE-DFAEWLLEKARVVVIPGTAF 358
Query: 388 GL--KDWLRITFAVEPSALEDGLGRMK 412
G + ++RI++A L + + RM+
Sbjct: 359 GKAGEGYIRISYATSKEKLIEAMERME 385
|
Length = 391 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 97/388 (25%), Positives = 174/388 (44%), Gaps = 50/388 (12%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
+I LG G+P F T +A + S+ + Y++ G+L R+ IA YL +
Sbjct: 22 VISLGVGEPD----FVTPWNVREASIRSLEQG-YTSYTANAGLLELRQEIAKYLKKRFAV 76
Query: 107 KLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT---------HSHL 156
P+D + +T+G +QA++V + + PG +L+ P F Y T + L
Sbjct: 77 SYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTL 136
Query: 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216
E F + PA+ +EA T A+++ +P NP G V L++IA +K
Sbjct: 137 E-NEFKVQPAQ--------IEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHD 187
Query: 217 IMVIADEVYDHLAFGNTPFVPMG-VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275
++V++DE+Y L + + + + G + + SK + + GWRLG+ + P
Sbjct: 188 LIVLSDEIYAELTY-DEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGF--IAAPVYF 244
Query: 276 LQDSGIVDSIKSFLNISSD----PATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331
+ + L I T Q A + L ++ ++ D R+ +
Sbjct: 245 SE---------AMLKIHQYSMMCAPTMAQFAALEALRAGNDD-VIRMRDSYRKRRNFFVT 294
Query: 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-- 389
EI +TC P G+ + ++ + G++S+ EFA +L EE V V+PG G
Sbjct: 295 SFNEIG-LTCH-VPGGAFYAFPSISST---GLSSE-EFAEQLLLEEKVAVVPGSVFGESG 348
Query: 390 KDWLRITFAVEPSALEDGLGRMKAFYDR 417
+ ++R ++A L++ + RMK F +
Sbjct: 349 EGFIRCSYATSLEQLQEAMKRMKRFVEN 376
|
Length = 378 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 107/376 (28%), Positives = 171/376 (45%), Gaps = 31/376 (8%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
+I LG GDP P T V+A+ + + + Y S G+L R+A+AD+ R
Sbjct: 31 VISLGIGDPD-LP---TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGV 86
Query: 107 KLSPDDVYLTL-GCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
+L P+ L+L G + I I PG +L+P PG+P Y + E L
Sbjct: 87 ELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKE 146
Query: 166 AKGWEVDLDAVEALADENTVA---LVIIN-PGNPCGNVYTYQHLQKIAETAKKLGIMVIA 221
G+ D DA+ E+ L+ IN P NP G V + +++ E AK+ I+V
Sbjct: 147 ENGFLPDFDAI----PEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCH 202
Query: 222 DEVYDHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280
D Y + F G + V G+ + S+SK + + GWR+G V + ++ G
Sbjct: 203 DNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGN--ADLIAGLG 260
Query: 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340
V + N+ S IQ A L ++ +I I + D+ + LK+I I
Sbjct: 261 KVKT-----NVDSGVFQAIQYAAIAALN-GPQDVVKEIRKIYQRRRDLLLEALKKIG-ID 313
Query: 341 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA 398
+KP+ + +V V + EG S EFA +L +E V+V PG+ G + ++RI+
Sbjct: 314 V-EKPKATFYVWVPVP----EGYTS-AEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT 367
Query: 399 VEPSALEDGLGRMKAF 414
V LE+ + R+K
Sbjct: 368 VPDERLEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 86/291 (29%), Positives = 128/291 (43%), Gaps = 18/291 (6%)
Query: 66 VAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAIE 124
A +AI V N Y GI R AIA R + PD +V +T+G T+AI
Sbjct: 45 AAQEAIAGGV-----NQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIA 99
Query: 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKGWEVDLDAVEALADEN 183
+ L PG +LL P + Y A + L+P +G+ +DLDA+ A
Sbjct: 100 AAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPR 159
Query: 184 TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-G 242
T AL++ +P NP G V T L IAE A + ++VI DEVY+HL F +P+ G
Sbjct: 160 TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPG 219
Query: 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGA 302
+T+ S +K + V GW++GW P ++ V + K +L Q A
Sbjct: 220 MRERTVTISSAAKTFNVTGWKIGW--ACGPAPLIAA---VRAAKQYLTYVG--GAPFQPA 272
Query: 303 VPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMV 353
V L+ E+ + + + D L+ D L E G+ F+
Sbjct: 273 VAHALD-HEDAWVAALRDSLQAKRDRLAAGLAEAGFEVHD--SAGTYFLCA 320
|
Length = 387 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 91/349 (26%), Positives = 160/349 (45%), Gaps = 44/349 (12%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP 142
Y G R AIA+ LNR L+ D + +T G A+ V L + PG +++ P
Sbjct: 69 YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAP 128
Query: 143 GFPYYEARATHSHLEVRHFDLLPAK--GWEVDLDAVEALADENTVALVIINPGNPCGNVY 200
F Y + ++ ++P ++ DLDA+EA T A++I +P NP G VY
Sbjct: 129 YFVEYRFYVDNHGGKLV---VVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVY 185
Query: 201 TYQHLQKIA----ETAKKLG--IMVIADEVYDHLAFGNT--PFVPMGVFGSIVPVLTLGS 252
+ + L+ +A E +K+ G I +I+DE Y + + P++ SIV + S
Sbjct: 186 SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIV----VYS 241
Query: 253 ISKRWIVPGWRLGWLVTSD--PNGILQDSGIVDS--IKSFLNISSDPATFIQGAVPQILE 308
SK +PG R+G++ + + + +V + I F+N PA Q V + L+
Sbjct: 242 FSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNA---PALM-QRVVAKCLD 297
Query: 309 KTEEEFFSKITDILRETADICCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSD 366
T + I + D+ D L E+ C+ KP+G+ ++ K S E D
Sbjct: 298 ATVD------VSIYKRNRDLLYDGLTELGFECV----KPQGAFYLFPK---SPEE---DD 341
Query: 367 MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFY 415
+ F + AK+ +++++PG G + R+++ V+ +E L +
Sbjct: 342 VAF-CEKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLA 389
|
Length = 394 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 92/385 (23%), Positives = 166/385 (43%), Gaps = 58/385 (15%)
Query: 59 PSFRT----ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDD-V 113
P F T A AI A + Y+ G+L R+A AD++ +P++ +
Sbjct: 40 PDFTTPDHVKEAAKRAI-----DANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEI 94
Query: 114 YLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEV-------RHFDLLPA 166
+T+G T+A+ LT + PG +LLP P +P YE E+ F L P
Sbjct: 95 LVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPE 154
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
L+ + A+++ P NP G Y+ + ++ +A+ KK I VI+DEVY
Sbjct: 155 M-----LEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYS 209
Query: 227 HLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
L + P V + + +P + + +SK + GWR+G +
Sbjct: 210 ELTYTGEPHVSIAEY---LPDQTILINGLSKSHAMTGWRIGLIFAPAEF-------TAQL 259
Query: 285 IKSFLNISSDPATFIQGAVPQIL-------EKTEEEFFSKITDILRETADICCDRLKEIP 337
IKS + + T Q A + L ++E+ + I+ + D+ K I
Sbjct: 260 IKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL---GFKII- 315
Query: 338 CITCPKKPEGSMFVMVKLNYSLLEGINSD-MEFALKLAKEESVIVLPGITVGL--KDWLR 394
KP+G+ ++ K+ G N D +F A++++V +PG G + ++R
Sbjct: 316 ------KPDGAFYIFAKIP----AGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVR 365
Query: 395 ITFAVEPSALEDGLGRMKAFYDRHA 419
+++A +++ + R+K + + HA
Sbjct: 366 LSYAASMETIKEAMKRLKEYMEEHA 390
|
Length = 391 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 78/346 (22%), Positives = 148/346 (42%), Gaps = 30/346 (8%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP 142
Y+ G R+AI L R + +++ + G QAI + L G +++P P
Sbjct: 66 YTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAP 125
Query: 143 GFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202
+ Y + +G+++ +A+EA T L++ P NP G VY+
Sbjct: 126 YWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSR 185
Query: 203 QHLQKIAET-AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKR 256
L+ +A+ + ++V+ D++YDH+ F + P + P VL +SK
Sbjct: 186 AELRALADVLLRHPHVLVLTDDIYDHIRFDDEP---TPHLLAAAPELRDRVLVTNGVSKT 242
Query: 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFF 315
+ + GWR+G+ + ++ +I + SS P++ Q A L ++ F
Sbjct: 243 YAMTGWRIGYAAGP--------ADLIAAINKLQSQSSSCPSSISQAAAAAAL-NGDQSFV 293
Query: 316 SKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--------INSDM 367
++ + ++ D L IP ++C P+G+ ++ V N + L G + +D
Sbjct: 294 TESVAVYKQRRDYALALLNAIPGLSC-LVPDGAFYLYV--NCAGLIGKTTPEGKVLETDQ 350
Query: 368 EFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413
+ L L V V+ G GL + R++ A LE+ R++
Sbjct: 351 DVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIER 396
|
Length = 402 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 86/353 (24%), Positives = 159/353 (45%), Gaps = 22/353 (6%)
Query: 67 AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDD-VYLTLGCTQAIEV 125
A++A+ + + + + Y + GI P AI L +D +L+ + + +T G A
Sbjct: 45 AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104
Query: 126 ILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA-KGWEVDLDAVEALADENT 184
+ + PG I+L P YY + L+P +++ +A+E T
Sbjct: 105 AILAITDPGDEIILNTP---YYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKT 161
Query: 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP-FVPMGVFGS 243
A+V I+P NP G VY L+ + + + GI I+DE Y++ + F P + GS
Sbjct: 162 RAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGS 221
Query: 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAV 303
++L S+SK + WR+G++V P +L+ + I+ + I P Q A
Sbjct: 222 GNHTISLYSLSKAYGFASWRIGYMVI--PIHLLE---AIKKIQDTILIC--PPVVSQYAA 274
Query: 304 PQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363
L+ + + +I + I L ++ G+ + +K+N L
Sbjct: 275 LGALQVGKSYCQQHLPEIA-QVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDL---- 329
Query: 364 NSDMEFALKLAKEESVIVLPGITVGLKD--WLRITF-AVEPSALEDGLGRMKA 413
+D E +L +E V V+PG T G+K+ +LRI + A++ + ++G+ R+
Sbjct: 330 -NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQ 381
|
Length = 389 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-24
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP 142
Y T G+L R +A+ N+ +++PDD+ G AI I +L R A ++ P P
Sbjct: 69 YCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLL-RREARVIGPSP 127
Query: 143 GFP-YYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN--TVALVIINPGNPCGNV 199
+ + A A H+ + L P W DLD +E N +++INP NP G V
Sbjct: 128 AYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAV 187
Query: 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG-VFGSIVPVLTLGSISKRWI 258
Y + L++I + A++ + +I DE+Y+++ + VP+ V G VP + L ISK
Sbjct: 188 YPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD-VPGIALKGISKELP 246
Query: 259 VPGWRLGWL 267
PG R GW+
Sbjct: 247 WPGSRCGWI 255
|
Length = 433 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 9e-23
Identities = 90/385 (23%), Positives = 165/385 (42%), Gaps = 51/385 (13%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNR--DL 104
LI L G P A AI + + Y+ G+L R+A +++ DL
Sbjct: 30 LISLTIGQPDFPTPSHVKEAAKRAI-----TENYTSYTHNAGLLELRKAACNFVKDKYDL 84
Query: 105 PYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE-----ARATHSHLEV 158
Y SP+ ++ +T+G ++AI++ + PG ++LP P +P YE A ++
Sbjct: 85 HY--SPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDT 142
Query: 159 RHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIM 218
R + G+ + +A+E E T +V+ P NP G + + LQ IA+ K I
Sbjct: 143 R------STGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIF 196
Query: 219 VIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278
V++DE+Y L + + + +SK + GWR+G+L
Sbjct: 197 VLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSY------ 250
Query: 279 SGIVDSIKSFLNISSDPATFI-QGAVPQILEKTEEEFFSKITDILRET----ADICCDRL 333
+ I + A+ I Q A + L +++ ++R D +RL
Sbjct: 251 --LAKHILKVHQYNVTCASSISQYAALEALTAGKDD-----AKMMRHQYKKRRDYVYNRL 303
Query: 334 KE--IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-- 389
+ KP G+ ++ + + ++S +FAL L +E + V+PG
Sbjct: 304 ISMGLDVE----KPTGAFYLFPSIGHF---TMSS-FDFALDLVEEAGLAVVPGSAFSEYG 355
Query: 390 KDWLRITFAVEPSALEDGLGRMKAF 414
+ ++R+++A L++GL R++AF
Sbjct: 356 EGYVRLSYAYSIETLKEGLDRLEAF 380
|
Length = 387 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 84/336 (25%), Positives = 150/336 (44%), Gaps = 28/336 (8%)
Query: 94 RAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGF-PYYEARAT 152
AIA + + +++ P+ + G I + + L +PG +++ P + P+Y A
Sbjct: 67 AAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAI-K 125
Query: 153 HSHLEVRHFDL-LPAKGWEVDLDAVE-ALADENTVALVIINPGNPCGNVYTYQHLQKIAE 210
+ +V L +E+D DA+E A DE ++ NP NP G V+T + L+KIAE
Sbjct: 126 LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAE 185
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLG 265
+ G+ VI+DE++ L G +P F S+ +TL S SK + + G +
Sbjct: 186 LCLRHGVRVISDEIHADLVLGGHKHIP---FASLSERFADNSITLTSASKTFNLAGLKCA 242
Query: 266 WLVTSDPNGILQDSGIVDSI-KSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRE 324
+++ S+ + + + AT + E + ++ + L++
Sbjct: 243 YIIISNRELRAKFLKRLKRNGLHGPSALGIIAT-------EAAYNQGEPWLDELLEYLKD 295
Query: 325 TADICCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP 383
D D L K +P + +P+G+ L+ L G+ D E A L +E V + P
Sbjct: 296 NRDYVADFLNKHLPGVKV-TEPQGTYLAW--LDCREL-GL-DDSELAEFLLEEAKVALSP 350
Query: 384 GITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDR 417
G T G ++R+ FA + LE+ L R+K +
Sbjct: 351 GSTFGEEGSGFVRLNFACPRAILEEALERLKRALKK 386
|
Length = 388 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 25/262 (9%)
Query: 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216
EV ++ L GW DLD + L NT + I N NP G + +L++I E A+ +
Sbjct: 127 EVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVD 186
Query: 217 IMVIADEVYDHLAFGNTPFVPMGVFGSIVPV----LTLGSISKRWIVPGWRLGWLVTSDP 272
V++DEVY L G SI + ++ S+SK + +PG R+GW+
Sbjct: 187 AYVLSDEVYRPLDED-------GSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAA--- 236
Query: 273 NGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332
+ ++D ++ + + + A + + + + + I+R I +
Sbjct: 237 -----NEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEW 291
Query: 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 392
+ + P ++ K S VKL+ + +F LKL KE V+++PG L+
Sbjct: 292 VAKEPRVSYVKPKAVST-SFVKLDVDM-----PSEDFCLKLLKETGVLLVPGNRFDLEGH 345
Query: 393 LRITFAVEPSALEDGLGRMKAF 414
+RI + + L+ GL ++ F
Sbjct: 346 VRIGYCCDTETLKKGLKKLSEF 367
|
Length = 373 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 7e-22
Identities = 105/379 (27%), Positives = 168/379 (44%), Gaps = 43/379 (11%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
I LG GDP P T ++A+ +V + Y S G+L R+A+AD+ R +
Sbjct: 34 ISLGIGDPD-LP---TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVE 89
Query: 108 LSPDDVYLTL-GCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166
L P+ ++L G + I I PG +L+P PG+P Y+ + E L
Sbjct: 90 LDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEE 149
Query: 167 KGWEVDLDAV-EALADENTVALVIIN-PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224
G+ DLDA+ E +A + L+ IN P NP G V + +++ + AKK I+V D
Sbjct: 150 NGFLPDLDAIPEDVAKK--AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAA 207
Query: 225 YDHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283
Y +A+ G P + V G+ + S+SK + + GWR+G+ V G D
Sbjct: 208 YSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAV-----------GNAD 256
Query: 284 SIKSFLNISS--DPATF--IQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI--P 337
I + S D F IQ A L +E ++ I +E DI + L+++
Sbjct: 257 LIAGLGKVKSNVDSGVFQAIQEAGIAAL-NGPQEVVEELRKIYQERRDILVEGLRKLGLE 315
Query: 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD----WL 393
+ P+ + +V + +G S EFA L + V+V PG G + +
Sbjct: 316 V----EPPKATFYVWAPVP----KGYTS-AEFATLLLDKAGVVVTPG--NGFGEYGEGYF 364
Query: 394 RITFAVEPSALEDGLGRMK 412
RI V +E+ + R+K
Sbjct: 365 RIALTVPDERIEEAVERIK 383
|
Length = 385 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 69/312 (22%), Positives = 136/312 (43%), Gaps = 48/312 (15%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
++A+ADY + P+ + L G + IE+++ PG +L+P P + YE A
Sbjct: 60 KQALADYYG------VDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK 113
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
EV L + ++DL+ + D+ + + +P NP GN+ + ++ + E
Sbjct: 114 IHGAEVVKVPL--DEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERT 171
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-------VLTLGSISKRWIVPGWRLG 265
+ ++V+ DE Y F P S +P ++ L ++SK + + G R+G
Sbjct: 172 PEDALVVV-DEAYGE--FSGEP--------STLPLLAEYPNLIVLRTLSKAFGLAGLRIG 220
Query: 266 WLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325
+ + ++ I ++ +++ N+S A Q A L +++F K + +
Sbjct: 221 YAI-ANAEII----DALNKVRAPFNLSR-LA---QAAAIAALR--DDDFIEKTVEEINAE 269
Query: 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-G 384
+ D LK++P + P + FV+++ D + + E+ +IV
Sbjct: 270 RERLYDGLKKLPGLEV--YPSDANFVLIRFPR--------DADALFEALLEKGIIVRDLN 319
Query: 385 ITVGLKDWLRIT 396
GL + LRIT
Sbjct: 320 SYPGLPNCLRIT 331
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-20
Identities = 93/357 (26%), Positives = 147/357 (41%), Gaps = 36/357 (10%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTV-GILPARRAIADY 99
+I L G+P P A + +VH+ Y T+ GI A+ +Y
Sbjct: 28 IAAGHKMIDLSIGNPDMPP----ADFVREEMVHTANQK--ESYGYTLSGIQEFHEAVTEY 81
Query: 100 LNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEV 158
N L+ D +V L +G + + V A PG IL+P PG+ YE +
Sbjct: 82 YNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATS 141
Query: 159 RHFDLLPAKGWEVDLDAV-EALADENTVALVIIN-PGNPCGNVYTYQHLQKIAETAKKLG 216
+ L + DL+ + E +AD+ ++I+N PGNP + +++ AKK
Sbjct: 142 YYMPLKKENDFLPDLELIPEEIADK--AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHN 199
Query: 217 IMVIADEVYDHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275
I+V+ D Y F GN P + V G+ + + S+SK + + G R+G+++
Sbjct: 200 IIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI------- 252
Query: 276 LQDSGIVDSIKSFLNISS--DPATF--IQGAVPQILEKTEEEFFSKITDILRETADICCD 331
G + +++ S D F IQ A L F K I +E D D
Sbjct: 253 ----GNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVD 307
Query: 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388
+ KP GSMFV ++ +G S + FA L +V+V PG G
Sbjct: 308 GFRTFGWNV--DKPAGSMFVWAEIP----KGWTS-LSFAYALMDRANVVVTPGHAFG 357
|
Length = 399 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 96/395 (24%), Positives = 163/395 (41%), Gaps = 57/395 (14%)
Query: 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNR 102
R +I +G G+P F V+A ++R Y+S +G+ P R AIA + R
Sbjct: 28 AGRDIIHMGIGEPD----FTAPEPVVEAAARALRRGVTQ-YTSALGLAPLREAIAAWYAR 82
Query: 103 DLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHF- 161
++P+ + +T G + A+ + L G +L+P P +P RHF
Sbjct: 83 RFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCN-----------RHFV 131
Query: 162 -------DLLP---AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAET 211
L+P A+ +++ VEA E T +++ +P NP G L++I E
Sbjct: 132 AAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEA 191
Query: 212 AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271
+ G I DE+Y L++ P V G V+T+ S SK + + GWRLGWLV
Sbjct: 192 VRARGGFTIVDEIYQGLSYDAAP-VSALSLGD--DVITINSFSKYFNMTGWRLGWLVV-- 246
Query: 272 PNGILQDSGIVDSIKSFLNISSDPATFIQGAV-----P---QILEKTEEEFFSKITDILR 323
P ++ G + + L I + Q A P I E+ EF + I+
Sbjct: 247 PEALV---GTFEKLAQNLFIC--ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVP 301
Query: 324 ETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP 383
+ L P P+G+ +V + + V+++P
Sbjct: 302 AL-----ESLG----FKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVP 352
Query: 384 GITVGL---KDWLRITFAVEPSALEDGLGRMKAFY 415
G G +D++R+++A S LE+ + R+ +
Sbjct: 353 GRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387
|
Length = 388 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 4e-20
Identities = 84/325 (25%), Positives = 136/325 (41%), Gaps = 26/325 (8%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R AIAD R V T G ++AI ++LT L RPG +++ P + A
Sbjct: 57 RAAIADRW-RGGD----AHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLSHLAV 111
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
+ EVR + LL +G+ DLDA+ AL T A+V+ P NP G T + L ++ E A
Sbjct: 112 ATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVTPRELDELLERA 171
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272
+ G +++ D + L P V++ G++SK + +PG R+GW V P
Sbjct: 172 ARSGAVLLWDNAFADLVHDAPPLPDPSALYD--RVISFGTLSKAFGLPGLRVGWCVG--P 227
Query: 273 NGILQDSGIVDSIKSFLNISSDPAT--FIQGAVPQILEKTEEEFFSKITDILRETADICC 330
+L + + ++ + +S P + AV + + R
Sbjct: 228 ADLLAE---LVRLRDYTTLSLSPLVELLAEVAV-----EHADALIGPRLAEARANRRRLL 279
Query: 331 DRLKEIP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL 389
D P + C PEG + + G + +L V+++PG G
Sbjct: 280 DWAAAHPDVVRCT-PPEGGVAAFPR-----FPGHADVTDLCRRLLARHGVLLVPGSCFGA 333
Query: 390 KDWLRITFAVEPSALEDGLGRMKAF 414
D +R+ F + L GL R+ AF
Sbjct: 334 ADRMRLGFGGSSAELRAGLARLSAF 358
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 4e-20
Identities = 102/411 (24%), Positives = 161/411 (39%), Gaps = 72/411 (17%)
Query: 32 LNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91
L LL+ + N + L G+P F T DA+ ++ + N Y + G
Sbjct: 11 LRELLKEITPNKEYKGLDLTIGEPQ----FETPKFIQDALKNN--AHLLNKYPKSAGEES 64
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILT----VLAR-PGANILLPRPGFPY 146
R A + R +L +++ T G EV+ VL I P P +
Sbjct: 65 LREAQRGFFKRRFKIELKENELIPTFGTR---EVLFNFPQFVLFDKQNPTIAYPNPFYQI 121
Query: 147 YEARATHSHLEVRHFDLLPAKGWEVDLDAVE-ALADENTVALVIIN-PGNPCGNVYTYQH 204
YE A S +V L + L+ E D LVI+N P NP G + +
Sbjct: 122 YEGAAIASRAKVLLMPLTKENDFTPSLNEKELQEVD-----LVILNSPNNPTGRTLSLEE 176
Query: 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF--------GSIVPVLTLGSISKR 256
L + + A K ++I DE Y + + NTP P + S VL + SISKR
Sbjct: 177 LIEWVKLALKHDFILINDECYSEI-YENTP--PPSLLEASILVGNESFKNVLVINSISKR 233
Query: 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEK------T 310
PG R G+ I D+ I+ K++ T++ A P L+K
Sbjct: 234 SSAPGLRSGF--------IAGDASILKKYKAY-------RTYLGCASPLPLQKAAAVAWL 278
Query: 311 EEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFA 370
++E +I + + +EI IT P + +V + +++D EF
Sbjct: 279 DDEHAEFFRNIYAKNLKLA----REILGIT---IPPATFYVWLP--------VDNDEEFT 323
Query: 371 LKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALEDGLGRMKAFYDR 417
KL + E + VLPG +G K ++RI + LE L +K + +
Sbjct: 324 KKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLEN 374
|
Length = 374 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 6e-20
Identities = 70/309 (22%), Positives = 133/309 (43%), Gaps = 40/309 (12%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA 151
R A+A+Y + P++V + G + IE+++ PG +L+P P F YE A
Sbjct: 62 LRAALAEYYG-----VVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAA 116
Query: 152 THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAET 211
+ EV P K + +DLDA+ A + T + + NP NP G + + L+ + E
Sbjct: 117 QLAGAEVVKV---PLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEA 173
Query: 212 AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271
+ G++VI DE Y F + + + ++ L + SK + + G R+G+ + +
Sbjct: 174 LPEGGLVVI-DEAYIE--FSPESSLELLKYPP--NLIVLRTFSKAFGLAGLRVGYAIANP 228
Query: 272 PNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328
++ ++ N+SS PA A L ++ + + +RE +
Sbjct: 229 --------ELIAALNKVRPPFNVSS-PA---LAAAIAALRD--ADYLEESVERIREERER 274
Query: 329 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388
LK + S + N+ L+ +++ + ++ ++V +VG
Sbjct: 275 LYAALKALGL----FGVFPS-----QANFVLVRVPDAEAAALAEALLKKGILVRDCSSVG 325
Query: 389 L-KDWLRIT 396
L +LRIT
Sbjct: 326 LLPGYLRIT 334
|
Length = 356 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 101/387 (26%), Positives = 169/387 (43%), Gaps = 44/387 (11%)
Query: 48 IPLGHGDPSAF--PSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLP 105
I LG G P R A A DA++ N Y +G+ R+A+A + R
Sbjct: 29 INLGQGFPDDPGPEDVRRA--AADALLD-----GSNQYPPMMGLPELRQAVAAHYARFQG 81
Query: 106 YKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA---RATHSHLEVRHF 161
L P+ +V +T G T+A+ L L PG ++L +P + Y RA VR
Sbjct: 82 LDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVR-- 139
Query: 162 DLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIA 221
L W + A+ A T A+++ NP NP G V+ + L +AE ++ + I
Sbjct: 140 --LEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAIC 197
Query: 222 DEVYDHLAFGNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280
DEV++H+ F +P M + G + +GS K + + GW++G+ V + P +L+
Sbjct: 198 DEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGF-VCAAPP-LLR--- 252
Query: 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI--PC 338
++ FL ++ P +Q AV L K +++F + L + D L+ I P
Sbjct: 253 VLAKAHQFLTFTTPP--NLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRIGFPV 309
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-------GLKD 391
+ +G+ F+ V L L D+ F +L +E V +P V +
Sbjct: 310 LPS----QGTYFLTVDLAPLGLAE--DDVAFCRRLVEEAGVAAIP---VSAFYEEDPVTS 360
Query: 392 WLRITFAVEPSALEDGLGRMKAFYDRH 418
+R FA + L++ + R+ A R
Sbjct: 361 VVRFCFAKRDATLDEAVERLAAARRRR 387
|
Length = 387 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 6e-19
Identities = 81/353 (22%), Positives = 149/353 (42%), Gaps = 36/353 (10%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
+I G+P T V+ + + + YS++ GI RRAI+ +
Sbjct: 31 IIDFSMGNPDG----PTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDV 86
Query: 107 KLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
+ P+ + +T+G + + ++ G +L+P P +P + A + +VR L+
Sbjct: 87 DIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVE 146
Query: 166 AKGWEVDLDAVEALADENTV----ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIA 221
VD A + +++ P NP + +K+ AK+ ++V+
Sbjct: 147 ----GVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202
Query: 222 DEVYDHLAFGN--TPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279
D Y + + P + M V G+ + ++SK + + GWR+G++V +P +
Sbjct: 203 DLAYADIVYDGWKAPSI-MQVPGAKDVAVEFFTLSKSYNMAGWRIGFMV-GNPELV---- 256
Query: 280 GIVDSIKSFLNISSDPATF--IQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP 337
+ IKS+ D TF +Q A LE +++ I + + D+ L E
Sbjct: 257 SALARIKSYH----DYGTFTPLQVAAIAALE-GDQQCVRDIAEQYKRRRDVLVKGLHEAG 311
Query: 338 CITCPKKPEGSMFVMVKL--NYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388
+ + P+ SM+V K+ Y+ + +EFA KL E V V PGI G
Sbjct: 312 WMV--EMPKASMYVWAKIPEPYAAM----GSLEFAKKLLNEAKVCVSPGIGFG 358
|
Length = 395 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 2e-18
Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 40/335 (11%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN-ILLPR 141
YS + GI R AIA + + P+D++LT G + A+ +++ +L R + IL P
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPI 223
Query: 142 PGFPYYEAR-ATHSHLEVRHFDLLPAKGWEVDLDAVEA-LADENTV-----ALVIINPGN 194
P +P Y A A H V ++ L A GW +++ ++ L D + ALV+INPGN
Sbjct: 224 PQYPLYSASIALHGGTLVPYY-LDEATGWGLEISELKKQLEDARSKGITVRALVVINPGN 282
Query: 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI---------- 244
P G V ++ + I E K+ G++++ADEVY +VP F S
Sbjct: 283 PTGQVLAEENQRDIVEFCKQEGLVLLADEVYQE-----NVYVPDKKFHSFKKVARSMGYG 337
Query: 245 ---VPVLTLGSISKRWIVP-GWRLGWL-VTSDPNGILQDSGIVDSIKSFLNISSDPATFI 299
+ +++ S+SK + G R G++ VT + + + V S+ NIS +
Sbjct: 338 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASL 397
Query: 300 QGAVPQILEKTEEEFFSK---ITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLN 356
+ P+ +++ E + ++ I L A D L + +TC K EG+M++ +++
Sbjct: 398 VMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTC-NKAEGAMYLFPRIH 456
Query: 357 YSL-------LEGINSDMEFALKLAKEESVIVLPG 384
D + +L ++V+PG
Sbjct: 457 LPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPG 491
|
Length = 534 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 89/379 (23%), Positives = 152/379 (40%), Gaps = 61/379 (16%)
Query: 59 PSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA-RRAIADYLNRDLPYKLSPDDVYLTL 117
P F TA V A ++ + Y++ G LPA R AIA + + + P+ + +T
Sbjct: 42 PDFTTAEPIVAAGQAALAAGHTR-YTAARG-LPALREAIAGFYAQRYGVDVDPERILVTP 99
Query: 118 GCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL-----------PA 166
G + A+ + ++L PG + LL PG+P RHF L P
Sbjct: 100 GGSGALLLASSLLVDPGKHWLLADPGYPCN-----------RHFLRLVEGAAQLVPVGPD 148
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
+++ VE + +TV ++ +P NP G + + L +++ + G ++ DE+Y
Sbjct: 149 SRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYH 208
Query: 227 HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286
L +G + V L S SK + + GWRLGWLV P + + ++ +
Sbjct: 209 GLTYGVDAASVLEVDDDA---FVLNSFSKYFGMTGWRLGWLVA--PPAAVPE---LEKLA 260
Query: 287 SFLNISSDPATFIQGAV-----PQ---ILEKTEEEFFSKITDILRETADICCDRLKEIPC 338
L IS +T Q A P+ ILE EF D L+E+
Sbjct: 261 QNLYIS--ASTPAQHAALACFEPETLAILEARRAEF--------ARRRDFLLPALRELG- 309
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDME-FALKLAKEESVIVLPGITVGL---KDWLR 394
+P+G+ ++ Y+ + D F + E V PG+ G +R
Sbjct: 310 FGIAVEPQGAFYL-----YADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVR 364
Query: 395 ITFAVEPSALEDGLGRMKA 413
+ L++ + R+
Sbjct: 365 FAYTQSLPRLQEAVERIAR 383
|
Length = 387 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 21/286 (7%)
Query: 69 DAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILT 128
+A++ + + Y G R I L L D+ +T G T+++ +++
Sbjct: 48 EAMIRCIEEGEYCKYPPPEGFPELRELILKDLG------LDDDEALITAGATESLYLVMR 101
Query: 129 VLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL-PAKGWEVDLDAVEALADENTVAL 187
PG N + P PG+ + A+ EV + +++ + V+ DENT +
Sbjct: 102 AFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLI 161
Query: 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV 247
+I+P NP G+ YT + +++ AE A+ ++ D Y A +T ++
Sbjct: 162 YLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTV--- 218
Query: 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQIL 307
T S SK + + G R+G +V + +++ +KS + I+ I
Sbjct: 219 -TSYSFSKIFGMAGLRIGAVVAT--------PDLIEVVKSIV-INDLGTNVIAQEAAIAG 268
Query: 308 EKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP-EGSMFVM 352
K ++E+ +I + + + + EI + P P G+M V+
Sbjct: 269 LKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVI 314
|
Length = 380 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-18
Identities = 87/356 (24%), Positives = 142/356 (39%), Gaps = 57/356 (16%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
I L G FP F V+A+ +++ A N Y G+ R AIA R +
Sbjct: 33 INLSQG----FPDFDGPPYLVEALAYAMA-AGHNQYPPMTGVAALREAIAAKTARLYGRQ 87
Query: 108 LSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE-------ARATHSHLEVR 159
D ++ +T G T+A+ + L RPG +++ P + Y RA L+
Sbjct: 88 YDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPP 147
Query: 160 HFDLLPAKGWEVDLDAVEALADENTVALVIIN-PGNPCGNVYTYQHLQKIAETAKKLGIM 218
F VD A T L+I+N P NP G V++ ++ + + I
Sbjct: 148 DF--------RVDWQRFAAAISPRT-RLIILNTPHNPSGTVWSAADMRALWQLIAGTDIY 198
Query: 219 VIADEVYDHLAFGNTPFVPMGVFG-----SIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273
V++DEVY+H+ F + + V + S K + V GW++G+ V P
Sbjct: 199 VLSDEVYEHIVFDGAGHASVLRHPELRERAFV----VSSFGKTYHVTGWKVGYCVA--PA 252
Query: 274 GILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEE------EFFSKITDILRETAD 327
+ S + + + + T Q A+ L E F+ D R
Sbjct: 253 AL---SAEFRKVHQYNTFTVN--TPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAA-- 305
Query: 328 ICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP 383
+ R K +PC EG+ F +V +YS + ++ D+EF L +E V +P
Sbjct: 306 LANSRFKLLPC-------EGTYFQLV--DYSAISDLD-DVEFCQWLTREHGVAAIP 351
|
Length = 386 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 88/348 (25%), Positives = 152/348 (43%), Gaps = 26/348 (7%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
+I LG G+P T VD + + + R + YS++ GI RRA A Y R
Sbjct: 32 IIDLGMGNPD----LPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGV 87
Query: 107 KLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
KL+PD V TLG + + + PG IL P P +P + + +R P
Sbjct: 88 KLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEP 147
Query: 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
+ + L+ + +AL++ P NP V + + AKK I++++D Y
Sbjct: 148 DEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAY 207
Query: 226 DHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
+ F GN P + V G+ + S+SK + + GWR+G+ V G + +
Sbjct: 208 SEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAV-----GNERLIAALTR 262
Query: 285 IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK----EIPCIT 340
+KS+L+ + T IQ A L ++ +++ ++ ++ D+ + +IP
Sbjct: 263 VKSYLDYGA--FTPIQVAATAALNGPQDC-IAEMRELYKKRRDVLVESFGRAGWDIP--- 316
Query: 341 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388
P SMF + + + S +EF+ L ++ V V PG+ G
Sbjct: 317 ---PPAASMFAWAPIPEAFRH-LGS-LEFSKLLVEKADVAVAPGVGFG 359
|
Length = 405 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 5e-17
Identities = 93/372 (25%), Positives = 152/372 (40%), Gaps = 51/372 (13%)
Query: 32 LNSLLENLNKNDTRPLIPLGHGDPS-AFPSFRTASVAVDAIVHSVRSARFNCYSSTVGIL 90
L +LL + ++P I L G+P P+F ++A+ ++ + Y +T G+
Sbjct: 15 LAALLAGVTPPASKPPIALSIGEPKHPTPAF-----VLEALRENLHG--LSTYPTTKGLP 67
Query: 91 PARRAIADYLNR--DLPYKLSPDDVYL-TLGCTQAIEVIL-TVLARPG-ANILLPRPGFP 145
R+AIA +L R DLP + P+ L G +A+ V+ +++P P +
Sbjct: 68 ELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQ 127
Query: 146 YYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205
YE A + E + G+ D DAV L + +PGNP G V + L
Sbjct: 128 IYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTL 187
Query: 206 QKIAETAKKLGIMVIADEVYDHLAF-GNTPFVPMGVF--------GSIVPVLTLGSISKR 256
+K+ E A + G ++ +DE Y L F P P G+ L S+SKR
Sbjct: 188 KKLIELADQYGFIIASDECYSELYFDEGNP--PAGLLQAAAQLGRDDFRRCLVFHSLSKR 245
Query: 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS--DPATFIQGAVPQILEKTEEEF 314
+PG R G++ +G + +K+FL + A I + I +E+
Sbjct: 246 SNLPGLRSGFV-----------AGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQH 294
Query: 315 FSKITDILRETADICCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALK 372
+ + RE + EI + + P+ Y + D FA
Sbjct: 295 VRENRALYREKF----AAVLEILGQVLDL-ELPDAGF-------YLWPKVPGDDEAFARA 342
Query: 373 LAKEESVIVLPG 384
L +EE+V VLPG
Sbjct: 343 LYEEENVTVLPG 354
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-16
Identities = 91/358 (25%), Positives = 156/358 (43%), Gaps = 44/358 (12%)
Query: 88 GILPARRAIADYLN--RDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFP 145
G+ R+A+A ++ R + PD + LT G T A E++ +LA PG +L+P P +P
Sbjct: 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYP 155
Query: 146 YYEARATHSHLEVR----HFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNP 195
++ R V+ H D + ++V A+EA E ++I NP NP
Sbjct: 156 GFD-RDLRWRTGVKIVPIHCD--SSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNP 212
Query: 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM-------GVFGSIVPVL 248
G L+ I + + I +++DE+Y F + FV + G G V
Sbjct: 213 LGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVH 272
Query: 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQIL- 307
+ S+SK +PG+R+G + + + + + SF +SS Q + +L
Sbjct: 273 IVYSLSKDLGLPGFRVGTIYSYNDKVVTT----ARRMSSFTLVSSQ----TQHLLASMLS 324
Query: 308 -EKTEEEFFSKITDILRETADICCDRLKE--IPCITCPKKPEGSMFVMVKLNYSLLEGIN 364
E+ E + + LR+ ++ L+ I C+ K +F + L+ LLE
Sbjct: 325 DEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECL----KGNAGLFCWMNLSP-LLETPT 379
Query: 365 SDMEFAL--KLAKEESVIVLPGITVGLKD--WLRITFA-VEPSALEDGLGRMKAFYDR 417
+ E AL + +E + + PG + + W R+ FA + LE L R+ F DR
Sbjct: 380 REGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDR 437
|
Length = 447 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 6e-16
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP 142
Y G+ R A A + +R +SP+ V++T GC QA + LA G ++LP P
Sbjct: 63 YGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLP 122
Query: 143 GFPYYEARATHSHLEVR--HFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVY 200
Y+ + L +R + G D A EAL T A+ ++ P NP G VY
Sbjct: 123 W--YFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVY 180
Query: 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISK 255
+ L ++ + A++ GI +I DE Y G P +F P ++ L S SK
Sbjct: 181 PPELLHELYDLARRHGIALILDETYRDFDSGGGA--PHDLFAD--PDWDDTLVHLYSFSK 236
Query: 256 RWIVPGWRLGWLVTS 270
+ + G R+G +V S
Sbjct: 237 SYALTGHRVGAVVAS 251
|
Length = 386 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 103/439 (23%), Positives = 175/439 (39%), Gaps = 98/439 (22%)
Query: 24 SGITVRGVLNSLLENLNKN-DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHS-----VRS 77
SGIT L+++LN T I LG G+P+ P ++ + S
Sbjct: 14 SGIT------QLMDDLNDGLRTPGAIMLGGGNPAHIP-------EMEDYFRDLLADLLAS 60
Query: 78 ARFN---C-YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP 133
+ Y G A+A LN + +SP ++ LT G A + + A
Sbjct: 61 GKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGR 120
Query: 134 GAN-----ILLP-RPGFPYYEARATHSHLEVRHF-------DLLPAK--GWEVDLDAVEA 178
A+ IL P P + Y + LE F +LLP + VD + +
Sbjct: 121 RADGSLKKILFPLAPEYIGY----ADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLHI 176
Query: 179 LADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM 238
DE+T A+ + P NP GNV T + L+K+ A++ I ++ D A+G PF P
Sbjct: 177 --DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLID-----NAYG-PPF-PG 227
Query: 239 GVFGSIVP------VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NI 291
+F P +L + S+SK + PG R G ++ D I++++ + I
Sbjct: 228 IIFSEATPLWNPNIILCM-SLSKLGL-PGVRCGI--------VIADEEIIEALSNMNGII 277
Query: 292 SSDPATFIQ---------GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP 342
S P G + ++ E F+ + + + L + PC+
Sbjct: 278 SLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIA---LLRRYLPDEPCLI-- 332
Query: 343 KKPEGSMFVMVKLNYSLLEGIN-SDMEFALKLAKEESVIVLPGIT--VGLK-DW------ 392
KPEG++F+ + + + + E +L K V+V+PG GL DW
Sbjct: 333 HKPEGAIFLWL-----WFKDLPITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQC 386
Query: 393 LRITFAVEPSALEDGLGRM 411
+R+ + + +E G+ +
Sbjct: 387 IRMNYVQDDEEIEKGIAIL 405
|
Length = 416 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 85/378 (22%), Positives = 159/378 (42%), Gaps = 54/378 (14%)
Query: 59 PSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTL 117
P+F V+ + ++R N Y+ GI R A+A+ R + P +V +
Sbjct: 39 PNFAPDPALVEGVARAMRDGH-NQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIA 97
Query: 118 GCTQAIEVILTVLARPGANILLPRPGFPYYE-------ARATHSHLEVRHFDLLPAKGWE 170
++ + ++ L PG ++ P F Y A L F
Sbjct: 98 SASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDF--------R 149
Query: 171 VDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF 230
V+ D V A T +++ P NP V++ L ++A+ + I++++DEVY+H+ F
Sbjct: 150 VNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVF 209
Query: 231 GNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL 289
M + + + S K + V GWR+G+ + P ++ + + + F+
Sbjct: 210 DGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLA--PAELMDE---IRKVHQFM 264
Query: 290 NISSDPATFIQGAVPQILEKTEE-----EFFSKITDIL-RETADICCDRLKEIPCITCPK 343
S+D T +Q A + L + F+ + D+L RE A R + +P
Sbjct: 265 VFSAD--TPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAG---SRFELLP------ 313
Query: 344 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-------GITVGLKDWLRIT 396
EGS F++ + + E SD +F L+L ++ V +P G GL +R++
Sbjct: 314 -SEGSFFMLARFRHFSDE---SDSDFVLRLIRDARVATIPLSAFYTDGTDTGL---IRLS 366
Query: 397 FAVEPSALEDGLGRMKAF 414
F+ + + L +G R+ +
Sbjct: 367 FSKDDATLVEGARRLCSL 384
|
Length = 384 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 86/376 (22%), Positives = 159/376 (42%), Gaps = 35/376 (9%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
LI LG G+P ++A + ++ + + Y G R+AI D+ +R
Sbjct: 37 LIDLGMGNPDGA----APQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGV 92
Query: 107 KLSPDDVYLTL-GCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
+L PD L L G + + + PG +L+P P +P + + ++ L P
Sbjct: 93 ELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKP 152
Query: 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
W +DL ++ + L P NP + ++I A+K IM++ D Y
Sbjct: 153 ENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCY 212
Query: 226 DHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
LAF G P + + G+ + ++SK + + GWR+G++V + I+
Sbjct: 213 AELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVG--------NRHIIQG 264
Query: 285 IKSFLNISSDPATF--IQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE----IPC 338
+++ L + D F +Q A L+ + + ++ + R D L E IP
Sbjct: 265 LRT-LKTNLDYGIFSALQKAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGELGWNIP- 321
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG--ITVGLKDWLRIT 396
+ +M++ V G+ S +FAL + ++ V+V PG G + ++RI+
Sbjct: 322 -----PTKATMYLWVPCPV----GMGS-TDFALNVLQKTGVVVTPGNAFGEGGEGYVRIS 371
Query: 397 FAVEPSALEDGLGRMK 412
+ L + L R+K
Sbjct: 372 LIADCDRLGEALDRLK 387
|
Length = 394 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 4e-15
Identities = 79/310 (25%), Positives = 133/310 (42%), Gaps = 23/310 (7%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGAN---IL 138
Y S +G R AI+ + R KL PD V + G +AI V P + ++
Sbjct: 32 YPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVI 91
Query: 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGN 198
PG+P YE A + E L G+ + L+ VE E T + I P NP G
Sbjct: 92 FGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGA 151
Query: 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI 258
+L++ ++ GI++ +DE Y + FG P + V I VL S+SKR
Sbjct: 152 TAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEV--GIENVLAFHSLSKRSG 209
Query: 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKI 318
+ G+R G V D I S + +++ ++S F+Q A ++ +
Sbjct: 210 MTGYRSG-FVAGDEKLI---SFL-RKLRANFGVAS--PDFVQAAAKAAWS--DDNHVLER 260
Query: 319 TDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 378
I + D+ + ++ P+ + ++ VK+ GI++ ++AL+L E
Sbjct: 261 RKIFKRKRDLFIEFFNKVGLEYLY--PDATFYLWVKVP----SGIDAK-DYALRLL-ENG 312
Query: 379 VIVLPGITVG 388
++V PG G
Sbjct: 313 IVVAPGENFG 322
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 8e-15
Identities = 60/201 (29%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYK-LSPDDVYLTLGCTQAIEVILTVLA-RPGANILLP 140
Y T G R AI D+L R L P V +G + + + T+L PG +++P
Sbjct: 52 YPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIP 111
Query: 141 RPGFPYYE-----ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN-PGN 194
+P YE A AT V D +LD V L+ +N PGN
Sbjct: 112 ELAYPTYEVGALLAGATP----VAADDPT-------ELDPV-------GPDLIWLNSPGN 153
Query: 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV---PMGVFGSIVPVLTLG 251
P G V + L+ I A++ G +V +DE Y L + P P G +L +
Sbjct: 154 PTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVH 213
Query: 252 SISKRWIVPGWRLGWLVTSDP 272
S+SKR + G+R G+ V DP
Sbjct: 214 SLSKRSNLAGYRAGF-VAGDP 233
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 56/388 (14%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
K+ LI +G G+P A +V ++ N + GI + A A Y+
Sbjct: 40 KHPDMELIDMGVGEPDEM-----ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYM 94
Query: 101 NRDLPYK-LSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHL-- 156
+ K + P +V ++G A+ ++ + PG L+ PG+P TH+
Sbjct: 95 EKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYP---VTGTHTKYYG 151
Query: 157 -EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215
EV + LL + DLD++ E L + P NP G V T + +++ + AK+
Sbjct: 152 GEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKEN 211
Query: 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275
I+V+ D Y L F P + V G+ + + S+SK + + GWRL ++V ++
Sbjct: 212 NIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNE---- 267
Query: 276 LQDSGIVDSIKSFLNI--SSDPATF--IQGAV------PQILEKTEEEF---FSKITDIL 322
+K+F + ++D F IQ A P+I EK E++ K+ IL
Sbjct: 268 -------LIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKIL 320
Query: 323 RETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI--NSDMEFALKLAKEESVI 380
E + P G+ ++ VK GI + EF+ L KE+ +
Sbjct: 321 NEVGFKA-------------EMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLIS 367
Query: 381 VLPGITVGLKDWLR--ITFAVEPSALED 406
+P G +LR +TF + ED
Sbjct: 368 TVPWDDAG--HFLRFSVTFEAKDEEEED 393
|
Length = 410 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 4e-14
Identities = 106/428 (24%), Positives = 174/428 (40%), Gaps = 76/428 (17%)
Query: 24 SGITVRGVLNSLLENLNKNDTRP-LIPLGHGDPSAFPS----FRTASVAVDAIVHSVRSA 78
SGIT L+++LN P I LG G+P+ P F+ + A A
Sbjct: 14 SGIT------QLMDDLNDGLRTPGAIMLGGGNPARIPEMDDYFQDLLAEMLA-SGKATEA 66
Query: 79 RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN-- 136
N Y G A+A L R+ + ++ ++ LT G A + + A ++
Sbjct: 67 LCN-YDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGT 125
Query: 137 ---ILLPRPGFPYYEARATHSHLEVRHF-------DLLPAK--GWEVDLDAVEALADENT 184
ILLP P Y A + LE F +LLPA + VD + + E+T
Sbjct: 126 EKKILLPLA--PEYIGYAD-AGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHI--GEST 180
Query: 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244
A+ + P NP GNV T + L K+ A++ GI +I D Y PF P +F
Sbjct: 181 GAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY------GVPF-PGIIFSDA 233
Query: 245 VP-----VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-LNISSDPATF 298
P ++ S+SK + PG R G ++ ++ ++ +I + IS P
Sbjct: 234 TPLWNENIILCMSLSKLGL-PGSRCGIIIANEK--------VIQAITNMNGIISLAPGRM 284
Query: 299 IQGAVPQILEKTEEEFFSK--ITDILRETADICCDRLK----EIPCITCPKKPEGSMFVM 352
+++E + S+ I R L+ E C+ KPEG++F+
Sbjct: 285 GPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLI--HKPEGAIFLW 342
Query: 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT--VGL-KDW------LRITFAVEPSA 403
+ + + E +L K V+++PG GL K+W +R+ + EP
Sbjct: 343 LWFK----DLPITTEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEK 397
Query: 404 LEDGLGRM 411
+E G+ +
Sbjct: 398 IEKGVAIL 405
|
Length = 417 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 29/181 (16%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA 151
R A A Y Y L V G +AI ++ +LA +L+ P + Y
Sbjct: 52 LRAAAAAY------YGLPAASVLPVNGAQEAIYLLPRLLAP--GRVLVLAPTYSEYARAW 103
Query: 152 THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAET 211
+ EV DLD + A +E + LV+ NP NP G + + L +A
Sbjct: 104 RAAGHEVVELP---------DLDRLPAALEEADL-LVVCNPNNPTGRLIPPETLLALAAR 153
Query: 212 AKKLGIMVIADEVYDHLAFGNTPFVP----MGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267
+ G ++ DE AF F P ++ L S++K + + G RLG++
Sbjct: 154 LRARGGWLVVDE-----AFI--DFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFV 206
Query: 268 V 268
V
Sbjct: 207 V 207
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 66/337 (19%), Positives = 138/337 (40%), Gaps = 35/337 (10%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA 151
A+ ++L + +++ P+ + G ++ + L PG +++ P +P + +
Sbjct: 65 LYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAV 124
Query: 152 THSHLEVRHFDLLPAKG-WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAE 210
+ E+ L G + DL+ +E E L++ +P NP G V+T + L ++AE
Sbjct: 125 KSNGRELVLNPLKLDPGRYRFDLEDLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAE 184
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLG 265
+ ++V++DE++ L + +P S+ P +TL S K + + G +
Sbjct: 185 LCLRHNVVVVSDEIHADLVYPPNKHIP---LASLSPEIAERTVTLLSPGKTFNIAGLNIS 241
Query: 266 WLVTSDP------NGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKIT 319
+ + +P Q I + + A + +G E + +
Sbjct: 242 FAIIPNPELRRAFQEAAQRVHIQHG--NLFGYVAFEAAYREG----------EPWLDALL 289
Query: 320 DILRETADICCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 378
LR D+ + + K +P I + PE + + L+ L D + ++
Sbjct: 290 AYLRGNRDLVEEFIAKRLPQIRV-RPPEATY--LAWLDCRALG--LDDADLRAFFIEQAG 344
Query: 379 VIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKA 413
+ + PGI+ G ++R+ F S LE L R++
Sbjct: 345 LGLNPGISFGDGGSGFMRLNFGCPRSTLEQALERLRQ 381
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 43/360 (11%)
Query: 59 PSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTL 117
P T +D + S + + + YS + GI R AI ++ R L P+ +V T+
Sbjct: 43 PDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATM 102
Query: 118 GCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA-- 175
G + ++ + PG ++P P +P + + V L + +E+D D
Sbjct: 103 GSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFF 162
Query: 176 --VEALADENT--VALVIIN-PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF 230
+E E++ V++N P NP +++ AKK +I+D Y + F
Sbjct: 163 ENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITF 222
Query: 231 GN--TPFVPMGVFGS---IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSI 285
TP + + V G+ V TL SK + + GWR+G++V G + G + I
Sbjct: 223 DGYKTPSI-LEVEGAKDVAVESYTL---SKSYNMAGWRVGFVV-----GNKKLVGALKKI 273
Query: 286 KSFLNISSDPATF--IQGAVPQILEKTEEEFFSKITDILRETADICCDRLK----EIPCI 339
KS+L D F IQ A L+ ++ +I + R+ D+ + E+
Sbjct: 274 KSWL----DYGMFTPIQVAATIALDG-DQSCVEEIRETYRKRRDVLIESFANAGWEL--- 325
Query: 340 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITF 397
+KP SMFV K+ + S +EF+ +L E V V PGI G +++RI
Sbjct: 326 ---QKPRASMFVWAKIPEPARH-LGS-LEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIAL 380
|
Length = 403 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 74/253 (29%), Positives = 107/253 (42%), Gaps = 32/253 (12%)
Query: 32 LNSLLENLNKNDTRPLIPLGHGDPS-AFPSFRTASVAVDAIVHSVRSARFNCYSSTVGIL 90
L +L + P I L G+P P+F DA+ ++ Y +T G+
Sbjct: 16 LRALFAGVTPPADLPPISLSIGEPKHPTPAF-----IKDALAANL--DGLASYPTTAGLP 68
Query: 91 PARRAIADYLNR--DLPYKLSPDDVYL-TLGCTQAI-EVILTVLAR--PGANILLPRPGF 144
R AIA +L R LP L P L G +A+ TV+ R PG ++ P P +
Sbjct: 69 ALREAIAAWLERRYGLP-ALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFY 127
Query: 145 PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204
YE A + E + PA + D DAV A T L + +PGNP G V
Sbjct: 128 QIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDD 187
Query: 205 LQKIAETAKKLGIMVIADEVYDHLAF-GNTPFVPMGV-----------FGSIVPVLTLGS 252
+K+ + + G ++ +DE Y + F P P+G+ F +V V S
Sbjct: 188 WKKLFALSDRYGFVIASDECYSEIYFDEAAP--PLGLLEAAAELGRDDFKRLV-VFH--S 242
Query: 253 ISKRWIVPGWRLG 265
+SKR VPG R G
Sbjct: 243 LSKRSNVPGLRSG 255
|
Length = 396 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 62/208 (29%), Positives = 84/208 (40%), Gaps = 33/208 (15%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTL--------GCTQ--------AIEVILTVLARPGA 135
+RAI D L+ Y PD Y L E I V
Sbjct: 38 LKRAIIDNLDCAERY---PDVEYRHLHQALARHHQVPASWILAGNGETESIFAV-----V 89
Query: 136 NILLPR------PGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVI 189
+ L PR PGF Y E+R + L A GW++ +EAL + L +
Sbjct: 90 SGLKPRRAMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLTDAILEALTPDLD-CLFL 148
Query: 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249
P NP G + Q LQ IAE K L I +I DE + T F+P + VL
Sbjct: 149 CTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLR 208
Query: 250 LGSISKRWIVPGWRLGWLVTSDPNGILQ 277
S++K + +PG RLG+LV SD + +
Sbjct: 209 --SLTKFYAIPGLRLGYLVNSDDAAVAR 234
|
Length = 356 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
A+AD + +SP+ V+L G A++ + + PG +L+P PGF YY A +
Sbjct: 73 ALADRWD------VSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYH 126
Query: 155 HLEVRHFDLLPAKGWEVDLDAV-EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAK 213
H EVR + + A +E D V +A E V L +P NP G+ ++ +AE
Sbjct: 127 HGEVREYPVSKADDFEQTADTVLDAYDGERIVYLT--SPHNPTGSEIPLDEVEALAERTD 184
Query: 214 KLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-------VLTLGSISKRWIVPGWRLGW 266
+ +V+ DE Y F P S V V L + SK + + G RLG+
Sbjct: 185 E-ETLVVVDEAYGE--FAERP--------SAVALVEERDDVAVLRTFSKAYGLAGLRLGY 233
Query: 267 LVTSD 271
V +
Sbjct: 234 AVVPE 238
|
Length = 357 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 42/150 (28%), Positives = 81/150 (54%), Gaps = 7/150 (4%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR-PGANILLPR 141
YS + G+ R+ +A+++ R Y P+ ++LT G ++ + IL + R +L+P
Sbjct: 103 YSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPV 162
Query: 142 PGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV-----EALADENTV-ALVIINPGNP 195
P +P Y A + + + L ++ W +D++ + +A + TV A+VIINPGNP
Sbjct: 163 PQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNP 222
Query: 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
G + +L++I + + ++++ DEVY
Sbjct: 223 TGQCLSEANLREILKFCYQERLVLLGDEVY 252
|
Length = 407 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 23/265 (8%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R+ IA + +L ++V L G T+ I I+ V +P +L+ P F YE
Sbjct: 60 RKRIASF------EQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERALK 111
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQKIAET 211
E+ + +L + + +E + +E + LV + NP NP G + + + ++KI +
Sbjct: 112 AFDAEIEYAELTEETNFAANEIVLEEIKEE--IDLVFLCNPNNPTGQLISKEEMKKILDK 169
Query: 212 AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271
+K I +I DE + N + + ++ + + +K + +PG RLG+ +TS+
Sbjct: 170 CEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN 229
Query: 272 PNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331
N + + ++ +I+ TF A +L+ ++E+ K ++E D +
Sbjct: 230 KNLAEK----LLQMREPWSIN----TFADLAGQTLLD--DKEYIKKTIQWIKEEKDFLYN 279
Query: 332 RLKEIPCITCPKKPEGSMFVMVKLN 356
L E I KP + F+ KL
Sbjct: 280 GLSEFKGIK-VYKPSVN-FIFFKLE 302
|
Length = 354 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 30/201 (14%)
Query: 83 YSSTVGILPARRAIADYLNRDLPY-KLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLP 140
Y +T G R AI +L R L P V +G + + + T+L PG +++P
Sbjct: 58 YPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIP 117
Query: 141 RPGFPYYE-----ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN-PGN 194
+P YE A AT V D++ L + AL+ +N P N
Sbjct: 118 ELAYPTYEVGARLAGATV-----------------VRADSLTELGPQR-PALIWLNSPSN 159
Query: 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV---PMGVFGSIVPVLTLG 251
P G V HL+K+ A++ G +V +DE Y L + P P G +L +
Sbjct: 160 PTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVH 219
Query: 252 SISKRWIVPGWRLGWLVTSDP 272
S+SK+ + G+R G+ V DP
Sbjct: 220 SLSKQSNLAGYRAGF-VAGDP 239
|
Length = 364 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R +A +L + + + G + I++I L PG N ++ P F Y A
Sbjct: 70 RTKVAKHLG------VDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAI 123
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
EVR +P K DL+A+ DE T + I NP NP G ++ L E+
Sbjct: 124 IEGAEVRE---VPLKDGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESV 180
Query: 213 KKLGIMVIADEVY 225
++V+ DE Y
Sbjct: 181 PS-HVLVVLDEAY 192
|
Length = 359 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 10/226 (4%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
+I LG G+P P T V+A+ + + + YS G + A AD+ R+
Sbjct: 34 VINLGQGNPDQ-P---TPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGV 89
Query: 107 KLSPDDVYLTLGCTQAIEVILTV-LARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
L P+ L +A V L L PG IL+P PG+P Y + + + L+
Sbjct: 90 TLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIA 149
Query: 166 AKGWEVDLDAV-EALADENTVALVIIN-PGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223
+ D + E +A++ L+ +N P NP G V T ++ AKK I V+ D
Sbjct: 150 ENNFLPDYTKIPEEVAEK--AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDF 207
Query: 224 VYDHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268
Y + F G P + G+ + L ++SK + + GWR+ + V
Sbjct: 208 AYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAV 253
|
Length = 389 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 78/365 (21%), Positives = 156/365 (42%), Gaps = 48/365 (13%)
Query: 88 GILPARRAIADYLNRDLPYKLS--PDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFP 145
G+ R+AIA ++ + K++ P+ V ++ G T A E I+ LA PG L+P P +
Sbjct: 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYA 154
Query: 146 YYEARAT-HSHLEVRHFDLLPAKGWEVDLDAVE------ALADENTVALVIINPGNPCGN 198
++ + +E+ + +++ +DA + +++ L++ NP NP G
Sbjct: 155 AFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214
Query: 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG------- 251
+ L + + I ++ DE+Y F FV + + V + +
Sbjct: 215 MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIV 274
Query: 252 -SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKT 310
S+SK +PG+R+G +V S + ++ + SF +SS + + +
Sbjct: 275 YSLSKDMGLPGFRVG-IVYSFNDSVVS---CARKMSSFGLVSSQTQLMLASML------S 324
Query: 311 EEEFFSKITDILRETADICCDRLK---------EIPCITCPKKPEGSMFVMVKLNYSLLE 361
+++F + + L E++ R K +I C+T +F + L + L +
Sbjct: 325 DDQF---VDNFLMESSRRLGIRHKVFTTGIKKADIACLT----SNAGLFAWMDLRHLLRD 377
Query: 362 --GINSDMEFALKLAKEESVIVLPGITVGLKD--WLRITFA-VEPSALEDGLGRMKAFYD 416
S++E + + + V PG + + W RI FA ++ L LGR++ F
Sbjct: 378 RNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVS 437
Query: 417 RHAKK 421
++ K
Sbjct: 438 KNKNK 442
|
Length = 496 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 86/369 (23%), Positives = 155/369 (42%), Gaps = 67/369 (18%)
Query: 90 LPA-RRAIADYL--NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPY 146
LPA + A+A+++ R P+ + LT G T A E ++ LA PG LLP P +P
Sbjct: 88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPG 147
Query: 147 YEARATHSHLEVRHFDLLP-----AKGWEVDLDAVEALADE------NTVALVIINPGNP 195
++ R V +++P + G+++ A+E + ++I NP NP
Sbjct: 148 FD-RDLKWRTGV---EIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNP 203
Query: 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL------- 248
G T L + + I +I+DE+Y F + FV S++ VL
Sbjct: 204 LGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFV------SVMEVLKDRKLEN 257
Query: 249 --------TLGSISKRWIVPGWRLGWLVTSDPNGI-----LQDSGIVDSIKSFL--NISS 293
+ S+SK +PG+R+G + ++D + + G+V S +L + S
Sbjct: 258 TDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLS 317
Query: 294 DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMV 353
D +K + + + L++ L+ I C K G +F V
Sbjct: 318 D-------------KKFTKNYLEENQKRLKQRQKKLVSGLEAAG-IKCLKSNAG-LFCWV 362
Query: 354 KLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLKD--WLRITFA-VEPSALEDGL 408
+ + LL+ ++ME K+ E + + PG + + W R+ FA + L+ +
Sbjct: 363 DMRH-LLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAM 421
Query: 409 GRMKAFYDR 417
R+K+F +
Sbjct: 422 KRLKSFVES 430
|
Length = 468 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Query: 91 PARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR 150
P RA+ + + + D + L G I VI + RPG ++ P FP +E
Sbjct: 71 PQGRALREAIAAR--TGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDY 128
Query: 151 ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAE 210
T V + P G DLDA+ A L+ NP NP G+ T L ++ +
Sbjct: 129 PTMMGARVERVTVTPDLG--FDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLD 186
Query: 211 TAKKLGIMVIADEVYDHLAFGNT-PFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269
++V+ DE Y A G+ P + +P + L + SK + + G R+G+ +
Sbjct: 187 ATPPETLIVV-DEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLV 245
Query: 270 SDP 272
SDP
Sbjct: 246 SDP 248
|
Length = 371 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 112 DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171
DV L G + I+++ A+PGA +L P PGF Y A + LE L + +
Sbjct: 83 DVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTA--DFTL 140
Query: 172 DLDAVEALADENTVALVIIN-PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF 230
DL A+ A E+ ALV + P NP GN++ +++I E A L V+ DE Y F
Sbjct: 141 DLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGL---VVVDEAYQ--PF 195
Query: 231 GNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268
++P + F +++ + T+ + + G RLG+L
Sbjct: 196 AGDSWLPRLARFPNLLVMRTVSKLG----LAGLRLGYLA 230
|
Length = 356 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
K +DLD +E + NP NP G VY+ + + +IA A++ G VI D++Y
Sbjct: 162 KRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYS 221
Query: 227 HLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLG 265
L + T + + I P V+T+ SK + G+RLG
Sbjct: 222 RLLYDGTSYTHLRALP-IDPENVITIMGPSKTESLSGYRLG 261
|
Length = 405 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 10/176 (5%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R+ IA+ L+ + + V G + I++I + + G NI+ FP Y A
Sbjct: 70 RQTIANKLHVKM------EQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAI 123
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
EV+ + DLD + ++ D +T + I NP NP G + L + E
Sbjct: 124 IEGCEVKE---VALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGI 180
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268
+ ++VI + Y+++ + P + + +L L + SK + + +R+G+ V
Sbjct: 181 SENTLIVIDEAYYEYVTAKDFPET-LPLLEKHKNILVLRTFSKAYGLASFRVGYAV 235
|
Length = 366 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 28/223 (12%)
Query: 75 VRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPG 134
V+S++ N Y R +A Y + + P ++++ G + I +I+ G
Sbjct: 48 VKSSQVNIYPDPTAE-KLREELARYCS------VVPTNIFVGNGSDEIIHLIMLAFINKG 100
Query: 135 ANILLPRPGFPYYEAR---ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII- 190
++ P P F Y A + V+ + + D+ + + ++ LV +
Sbjct: 101 DVVIYPHPSFAMYSVYSKIAGAVEIPVKL-----KEDYTYDVGSFIKVIEKYQPKLVFLC 155
Query: 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250
NP NP G+V + + KI E ++ GI V+ DE Y +GNT + F +++ + TL
Sbjct: 156 NPNNPTGSVIEREDIIKIIEKSR--GI-VVVDEAYFEF-YGNTIVDVINEFENLIVLRTL 211
Query: 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS 293
SK + + G R+G+ V ++ N + ++ +KS NI+S
Sbjct: 212 ---SKAFGLAGLRVGYAV-ANENIL----KYLNLVKSPYNINS 246
|
Length = 351 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 71 IVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL 130
I ++ FN Y + P R AIA++ L +++ + G + I ++ +
Sbjct: 40 IFEELKRVPFNRYPH-ITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLVKLF 92
Query: 131 ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII 190
G +I++ P F Y A + + V L + + +D + + A N A+ I
Sbjct: 93 E--GKHIVITPPTFGMYSFYAKLNGIPVIDVPL--KEDFTIDGERIAEKAK-NASAVFIC 147
Query: 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250
+P NP GN+ + + K+ ET G V+ DE Y + + +G+ ++ L
Sbjct: 148 SPNNPTGNLQPEEEILKVLET----GKPVVLDEAYAEFSGKSL----IGLIDEYPNLILL 199
Query: 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286
+ SK + + G R G+ + + I+D++
Sbjct: 200 RTFSKAFGLAGIRAGYAIAN--------EEIIDALY 227
|
Length = 337 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 12/161 (7%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGF-PYYEAR 150
+A L D T A E L L PG +++ G Y
Sbjct: 5 LEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVA 58
Query: 151 ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQKIA 209
A + + + A +D+ +E L + VAL++I G + L++I
Sbjct: 59 AELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIR 115
Query: 210 ETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250
+ AK+ GI+++ D A P V + G+ V +L
Sbjct: 116 KIAKEYGILLLVDAASAGGASPA-PGVLIPEGGADVVTFSL 155
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV------DLDA 175
AI +L L + G +++ + T+ E LLP G EV D +A
Sbjct: 67 AISTVLLALLKAGDHVVASDDLY-----GGTYRLFE----RLLPKLGIEVTFVDPDDPEA 117
Query: 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
+EA T + + +P NP V ++ IAE A + G +++ D
Sbjct: 118 LEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVD 161
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 58/189 (30%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 96 IADYLNRDLPYKLSPD---DVYLTLGCTQAIEVILTVLA-----RPGANILLPRPGF-PY 146
+ DYL +++ P D++ G T A+ I L + G I L P F PY
Sbjct: 144 VKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPY 203
Query: 147 YE-ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205
E LEV H + W+ +E L D + AL ++NP NP + + L
Sbjct: 204 LEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESL 263
Query: 206 QKIAETAKK----LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL---TLG--SISKR 256
+KIA+ + L M+I D+VY G FV F S+ VL T+ S SK
Sbjct: 264 EKIADIVNEKRPDL--MIITDDVY-----GT--FVDD--FRSLFAVLPYNTILVYSFSKY 312
Query: 257 WIVPGWRLG 265
+ GWRLG
Sbjct: 313 FGATGWRLG 321
|
Length = 527 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 8e-07
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
+ A+A+ + + P+ + L G + +E++ PG ++ GF Y A
Sbjct: 73 KAALAEK------FGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQ 126
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
+ +PAK + DLDA+ A T + I NP NP G TY +++
Sbjct: 127 AVGAKPVE---VPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTG---TYLPAEEVERFL 180
Query: 213 KKL--GIMVIADEVY 225
+ ++V+ DE Y
Sbjct: 181 AGVPPDVLVVLDEAY 195
|
Length = 367 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 9e-07
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 122 AIEVILTVLARPGANILLPR----PGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177
AI L L + G +++ + +E +EV D DLDA+E
Sbjct: 79 AIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVTFVDPS-------DLDALE 131
Query: 178 ALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
A NT A+ + P NP V ++ IA+ AKK G +V+ D
Sbjct: 132 AAIKPNTKAVFLETPTNPLLKVVD---IEAIAKIAKKHGALVVVD 173
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 69/247 (27%), Positives = 99/247 (40%), Gaps = 53/247 (21%)
Query: 42 NDTRPLIPLG-HGDPSAFPSFRTASVAV----------DAIVHSVRSARFNCYSSTVGIL 90
+DT PL L HGD A P +V V + + + Y ST
Sbjct: 4 SDTSPLAALRHHGDQDAGPGLLDFAVNVRHDTPPEWLRERLAARL--GDLAAYPSTEDER 61
Query: 91 PARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPR------PGF 144
AR A+A R PD+V L G + +LAR L PR P F
Sbjct: 62 RARAAVAARHGRT------PDEVLLLAGAAEG----FALLAR-----LRPRRAAVVHPSF 106
Query: 145 PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQ 203
EA + + V L P + +D AV AD LV+I NP NP ++ +
Sbjct: 107 TEPEAALRAAGIPVHRVVLDPP--FRLDPAAVPDDAD-----LVVIGNPTNPTSVLHPAE 159
Query: 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVFGSIVP-VLTLGSISKRWIVPG 261
L + G +++ DE AF + P P + G +P VL L S++K W + G
Sbjct: 160 QLLALRRP----GRILVVDE-----AFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAG 210
Query: 262 WRLGWLV 268
R+G+ +
Sbjct: 211 LRVGYAL 217
|
Length = 349 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 23/155 (14%)
Query: 126 ILTVLARP---GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE 182
+LT R + L P F Y V+ L + ++ L +
Sbjct: 86 LLTWAGRELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQ 145
Query: 183 NTV--ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
T L++ NP NP G +++ + + + E +V+ DE AF + F+P
Sbjct: 146 LTPNDGLLLNNPHNPTGKLWSREAILPLLEQFA----LVVVDE-----AFMD--FLPPDA 194
Query: 241 FGSIVPVLT-------LGSISKRWIVPGWRLGWLV 268
S++P L L S++K + +PG RLG+ +
Sbjct: 195 EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAI 229
|
Length = 360 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR---PGANILLPRPG----- 143
AR +A+++N S +++ T G T+AI ++ L R PG IL+
Sbjct: 48 AREKVAEFINAP-----SDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANL 102
Query: 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVY-TY 202
P+ E A + VR + P +DLDA+E L T LV I + NV T
Sbjct: 103 VPWQEL-AKRTGATVRVIPVDP--NGLLDLDALEKLLTPRT-KLVAITHVS---NVTGTV 155
Query: 203 QHLQKIAETAKKLGIMVIAD 222
+++I + A + G +V+ D
Sbjct: 156 NPVEEIGKLAHEYGALVVVD 175
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 122 AIEVILTVLARPGANILLPRP--GFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVE 177
AI L L + G ++LLP G Y E +EV D D
Sbjct: 90 AISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP------GDDEALEA 143
Query: 178 ALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
A+ + NT + + P NP V + IA AK G +V+ D +
Sbjct: 144 AIKEPNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTF 188
|
Length = 396 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 120 TQAIEVILTVLARPGANILLPRPGFPY-YEARATHSHLEVRHF-DLLPAKGWEVDLDAVE 177
T A ++ L R G ++ P Y E H+ L L A+ ++DL+ +E
Sbjct: 57 TMANQLALMAHCRRGDEVICGEPAHIYFDETGG-HAELGGAQPVPLPGAEAGKLDLEDLE 115
Query: 178 ALADE-------NTVALVIINPGN-PCGNVYTYQHLQKIAETAKKLGIMVIAD 222
A T + + N N G V + + L++I A++ GI + D
Sbjct: 116 AAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLD 168
|
Length = 288 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 67 AVDAIVHSVRSARFNCY-SSTVGILPARRAIADYLNRDLPYKLSPDDVYLT-LGCTQAIE 124
AV+AI + + Y L R A++ Y + +++ + G + I+
Sbjct: 52 AVEAIEKELSKI--HRYPEPDAPEL--REALSKYTG------VPVENIIVGGDGMDEVID 101
Query: 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT 184
++ PG +++P P F YYE A + + + + +D+D+V E T
Sbjct: 102 TLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVY--AKREEDFSLDVDSVLNAITEKT 159
Query: 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
+ + P NP GN+ + ++KI E+ L V DE Y
Sbjct: 160 KVIFLCTPNNPTGNLIPEEDIRKILESTDAL---VFVDEAY 197
|
Length = 361 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 39/204 (19%)
Query: 96 IADYLNRDLPYKLSPD---DVYLTLGCTQAI-----EVILTVLARPGANILLPRPGF-PY 146
+ YL +++ P D++ G T A+ + L + G I L P F PY
Sbjct: 138 VHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPY 197
Query: 147 YEARATHSHLEVRHFDLL----------PAKGWEVDLDAVEALADENTVALVIINPGNPC 196
E L F+++ W+ +E L D + AL ++NP NP
Sbjct: 198 LEI----PELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPP 253
Query: 197 GNVYTYQHLQKIAETAKKL--GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL---TLG 251
+ + ++KI + +M++ D+VY FV F S+ L T+G
Sbjct: 254 SVAMSDESIEKIVDIVANDRPDLMILTDDVY-------GTFVDD--FRSLFAELPYNTIG 304
Query: 252 --SISKRWIVPGWRLGWLVTSDPN 273
S SK + GWRLG + N
Sbjct: 305 VYSFSKYFGATGWRLGTIALHKDN 328
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 40/246 (16%)
Query: 116 TLGCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173
TLG T A+ V LAR P A + + P +P ++A + LEV + A+ +D
Sbjct: 100 TLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDF 159
Query: 174 DA-VEAL--ADENTVALVIINP--GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY--- 225
D + L A E +V V+++ NP G T + Q++A+ K+ G++ D Y
Sbjct: 160 DGMLADLKTAPEGSV--VLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGF 217
Query: 226 ----DHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281
+ A+ F +G +L S SK + + G R+G L + +D+
Sbjct: 218 ADGLEEDAYALRLFAEVG-----PELLVASSFSKNFGLYGERVGALSV-----VAEDAEE 267
Query: 282 VDSIKSFL-----NISSDPATFIQGA--VPQILEKTE--EEFFSKITDI---LRETADIC 329
D + S L S+P GA V IL E E+ ++ ++ + E
Sbjct: 268 ADRVLSQLKAIIRTNYSNPPAH--GAAVVATILNNPELRAEWEQELEEMRQRILEMRQAL 325
Query: 330 CDRLKE 335
D LK
Sbjct: 326 VDALKA 331
|
Length = 396 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI---------------EVILTVLARPGAN 136
AR A+A +LN D S D++ T G T+A+ E++++ L +N
Sbjct: 71 AREAVARFLNAD-----SSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHH-SN 124
Query: 137 ILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC 196
I+ P+ E +VR L +DLDA+E L T + + + N
Sbjct: 125 IV------PWQELAKRTG-AKVRVIPLDDD--GLLDLDALEKLITPKTKLVALSHVSNVT 175
Query: 197 GNVYTYQHLQKIAETAKKLGIMVIAD 222
G V +++IAE A + G +V+ D
Sbjct: 176 GTV---NPVKEIAELAHEHGALVLVD 198
|
Length = 405 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 108 LSPDDVYLTLGCTQAIEVILTVLARPGA-NILLPRPGFPYYEARATHSHLEVRHFDLLPA 166
+ P+ V ++ G + IE+++ PG IL P + Y A +E+R L
Sbjct: 72 VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL-- 129
Query: 167 KGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
W++DL A+ D V +V + +P NP GN+ Q L+ + E + I V+ADE Y
Sbjct: 130 DNWQLDLPAIADNLDG--VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAI-VVADEAY 186
|
Length = 351 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R A+A+ L +++ + G + I++++ + PG I+ P F Y A
Sbjct: 92 RAALAEDSG------LESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAA 145
Query: 153 HSHLEVRHFDLLPAKGWEVDLDA-VEALADENTVALVIINPGNPCGNVYTYQHLQKIAET 211
+ EV P + +D+ VEA+ L + +P NP G++ + L KI E
Sbjct: 146 VNGAEVIKVPRTP--DFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILE- 202
Query: 212 AKKLGIMVIADEVY 225
L I+V+ DE Y
Sbjct: 203 ---LPILVVLDEAY 213
|
Length = 380 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 23/241 (9%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR-FNCYSSTVGILPARRAIA-- 97
KN + +I LG GD + P + A V + S F Y G R AIA
Sbjct: 29 KNPSADIIRLGIGDTTQ-PLPASVIEAFHNAVDELASPETFRGYGPEQGYPFLREAIAEN 87
Query: 98 DYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY------EARA 151
DY R + P++++++ G + + ++ P + + P +P Y RA
Sbjct: 88 DYRGR-----IDPEEIFISDGAKCDVFRLQSLF-GPDNTVAVQDPVYPAYLDSNVMAGRA 141
Query: 152 THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV-IINPGNPCGNVYTYQHLQKIAE 210
+ R+ + + + + L +E + ++ + +P NP G V T + L+++ +
Sbjct: 142 GVLDDDGRYSKITYLPCTA-ENNFIPELPEEPHIDIIYLCSPNNPTGTVLTKEQLKELVD 200
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVF---GSIVPVLTLGSISKRWIVPGWRLGWL 267
A + G +++ D Y AF + P +P +F G+ + S SK G RLGW
Sbjct: 201 YANEHGSLILFDAAYS--AFISDPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVRLGWT 258
Query: 268 V 268
V
Sbjct: 259 V 259
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 106 YKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
KL + + +T G T+A+ ++ +LA +++PR + YE A +
Sbjct: 50 SKLFGEPIVITAGITEALY-LIGILALRDRKVIIPRHTYGEYERVARFFAARII------ 102
Query: 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
KG D + +E L + N+V + NP NP G Y ++ L+ + + + ++I DE
Sbjct: 103 -KG-PNDPEKLEELVERNSV-VFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDE-- 157
Query: 226 DHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266
AF FV ++ L + +K + +PG R+G+
Sbjct: 158 ---AF--IDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGY 193
|
Length = 311 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 136 NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNP 195
NI++ P F Y+ A + LP + E L + N + I++P NP
Sbjct: 81 NIIIVEPNFNEYKGYAFTHGIR---ISALPFNLINNN---PEILNNYNFDLIFIVSPDNP 134
Query: 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV------LT 249
GN+ + L I+E +K G ++ DE AF + FVP V + +
Sbjct: 135 LGNLISRDSLLTISEICRKKGALLFIDE-----AFID--FVP-NRAEEDVLLNRSYGNVI 186
Query: 250 LG-SISKRWIVPGWRLGWLVTSDPN 273
+G S++K +P R+G++ T D N
Sbjct: 187 IGRSLTKILGIPSLRIGYIATDDYN 211
|
Length = 332 |
| >gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 3e-04
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 137 ILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP 192
+L+ P Y + +EV DL+A+EA D++T A+V+ P
Sbjct: 157 VLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGV---TDLEALEAAVDDDTAAVVVQYP 213
Query: 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIA 221
N G + + L++IAE A G + I
Sbjct: 214 -NFFGVI---EDLEEIAEIAHAGGALFIV 238
|
Length = 447 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI---------------EVILTVLARPGAN 136
AR +A ++N SPD++ T T+AI E++ +V+ +N
Sbjct: 48 AREKVARFINAP-----SPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEH-HSN 101
Query: 137 ILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC 196
I+ P+ + +++ + G ++DL+A+E L E T + + + N
Sbjct: 102 IV------PWQQLAERTG-AKLKVVPVDD-DG-QLDLEALEKLLTERTKLVAVTHVSNVL 152
Query: 197 GNVYTYQHLQKIAETAKKLGIMVIAD 222
G + +++I E A + G+ V+ D
Sbjct: 153 GTI---NPVKEIGEIAHEAGVPVLVD 175
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
Query: 122 AIEVILTVLARPGANILLPRPGFPYYEAR---ATHSHLEVRHFDLLPAKGWEV------D 172
AI + LA G NI+ ++ T++ L G EV D
Sbjct: 89 AITYAILNLAGAGDNIV--------SSSKLYGGTYNLFSH----TLKRLGIEVRFVDPDD 136
Query: 173 LDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
+ EA DENT A+ GNP +V ++ IAE A + G+ +I D
Sbjct: 137 PENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVD 183
|
Length = 426 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 165 PAKGWEVDLDAVEALADE--NTVALVIINP--GNPCGNVYTYQHLQKIAETAKKLGIMVI 220
P DL+A+E +E VA VI+ P G V +L+ + E +K GI++I
Sbjct: 170 PPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLI 229
Query: 221 ADEV 224
ADEV
Sbjct: 230 ADEV 233
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.002
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 88 GILPARRAIADYLN--RDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFP 145
G+ R+AIA+++ R K D + L+ G T A E+I+ +A PG L+P P +
Sbjct: 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152
|
Length = 153 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
Query: 172 DLDAVEALADENTVALVI--------INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223
D++A+EA DE+T A+++ + P P + L+ + E + G ++I DE
Sbjct: 173 DIEALEAAIDEDTAAVIVEPIQGEGGVIPAPP-------EFLKALRELCDEHGALLILDE 225
Query: 224 V 224
V
Sbjct: 226 V 226
|
Length = 404 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 23/160 (14%)
Query: 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYL---TLGCTQAIEVILTVLARPGANILL 139
Y+ GI R + + R+ P LS + L T T + ++ + G +LL
Sbjct: 40 YAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLL 98
Query: 140 PRPGFPYYE-ARATHSHLEVRHFDLLPAKGWEVDLDA-VEAL--ADENTVALVIIN-PGN 194
P + Y+ T E+ + + G D DA EAL A +VI+N P N
Sbjct: 99 PDHNWGNYKLTFNTRRGAEIVTYPIFDEDG-GFDTDALKEALQAAYNKGKVIVILNFPNN 157
Query: 195 PCGNVYT---------YQHLQKIAETAKKLGIMVIADEVY 225
P G YT + ++++A+ K ++ + D+ Y
Sbjct: 158 PTG--YTPTEKEATAIVEAIKELADAGTK--VVAVVDDAY 193
|
Length = 388 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 106 YKLSPDDVYLTLGCTQAIEVILTVLARPGAN-ILLPRPGFPYYEARATHSHLEVRHFDLL 164
Y +P+ + + G +AI++++ L PG + +L+ P F Y A + + L+
Sbjct: 72 YGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLV 131
Query: 165 P-AKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
A G+ D+ A+ A A + LV + +P NP G+ +++ + + ++V+ D
Sbjct: 132 DGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVV-D 190
Query: 223 EVY 225
E Y
Sbjct: 191 EAY 193
|
Length = 364 |
| >gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 164 LPAKGWEV------DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI 217
LP G E D+ A+EAL DE T A+ + GNP GN+ +Q +A+ A + G+
Sbjct: 118 LPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGV 174
Query: 218 MVIAD 222
+I D
Sbjct: 175 PLIVD 179
|
Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 422 | |||
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.98 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.98 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.98 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.98 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.98 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.98 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.97 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.97 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.97 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.97 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.97 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.97 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.97 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.97 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.96 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.96 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.96 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.96 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.96 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.96 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.96 | |
| PLN02651 | 364 | cysteine desulfurase | 99.96 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.96 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.96 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.96 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.96 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.96 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.96 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.96 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.96 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.95 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.95 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.95 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.95 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.95 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.95 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.95 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.95 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.95 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.95 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.95 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.95 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.95 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.95 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.95 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.95 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.95 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.94 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.94 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.94 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.94 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.94 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.94 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.94 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.94 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.94 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.94 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.94 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.94 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.94 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.94 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.94 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.94 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.94 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.94 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.94 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.94 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.94 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.94 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.94 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.94 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.93 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.93 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.93 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.93 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.93 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.93 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.93 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.92 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.92 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.92 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.92 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.92 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.92 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.92 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.92 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.92 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.92 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.92 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.92 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.92 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.92 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.91 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.91 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.91 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.91 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.91 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.91 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.91 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.91 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.91 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.91 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.91 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.9 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.9 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.9 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.9 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.9 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.9 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.9 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.9 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.9 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.89 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.89 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.89 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.89 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.89 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.89 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.89 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.89 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.89 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.89 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.89 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.89 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.89 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.88 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.88 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.88 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.88 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.88 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.88 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.88 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.88 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.88 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.88 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.88 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.88 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.88 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.88 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.87 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.87 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.87 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.87 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.87 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.87 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.87 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.87 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.87 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.87 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.87 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.87 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.86 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.86 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.86 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.86 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.86 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.86 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.86 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.85 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.85 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.85 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.85 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.85 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.85 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.85 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.85 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.84 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.84 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.84 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.84 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.84 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.83 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.83 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.83 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.82 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.82 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.82 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.82 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.81 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.81 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.81 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.81 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.8 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.8 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.8 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.79 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.79 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.79 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.79 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.78 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.76 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.76 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.74 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.74 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.73 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.73 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.73 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.73 | |
| PLN02263 | 470 | serine decarboxylase | 99.72 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.71 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.71 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.69 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.67 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.67 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.65 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.64 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.63 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.63 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.61 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.61 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.61 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.6 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.57 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.55 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.54 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.48 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.46 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.46 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.39 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.34 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.33 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.32 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.16 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.14 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.09 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 99.05 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.04 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.04 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.94 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.94 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.92 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.84 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.79 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.68 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.61 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 98.0 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.99 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.86 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 96.65 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.53 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 86.74 | |
| COG1105 | 310 | FruK Fructose-1-phosphate kinase and related fruct | 80.4 |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=425.32 Aligned_cols=409 Identities=62% Similarity=1.099 Sum_probs=385.7
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHH
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~ 91 (422)
|+++.++.....+...||.+...+..--.......+|.+++|+|+.++.+++.++..+|+.+.+..+..++|+|..|++.
T Consensus 28 W~f~gs~~a~ka~~~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~ 107 (447)
T KOG0259|consen 28 WRFKGSDAAKKAASVTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILP 107 (447)
T ss_pred eeeccchhhhhhccccHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHH
Confidence 99999988888888999999987766554544568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 92 lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
.|+++|+++.+......++++|++|+|.++|++.++.++.+||..||++.|+|+-|...+...|++++.+.+-|+.+|.+
T Consensus 108 AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weI 187 (447)
T KOG0259|consen 108 ARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEI 187 (447)
T ss_pred HHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCccccee
Confidence 99999999999888788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 172 DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 172 d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
|++.+|.+++++|.++++.||+||.|.+++.+-+++|+++|+++++.||.||+|..+.|++.++.++..+.....+++++
T Consensus 188 DL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlg 267 (447)
T KOG0259|consen 188 DLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLG 267 (447)
T ss_pred chHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
|+||.|..||||+||++..|+.+++......+.++........|+++.|.|+-.+|+...++++.....-++.+.+...+
T Consensus 268 gisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~ 347 (447)
T KOG0259|consen 268 GISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYS 347 (447)
T ss_pred ccccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999997777778888888888899999999999999988899999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l 411 (422)
+|+++|++.+...|++.+|+|+.++...+....++.++...|+++..+.+.||..|+.++|+|++++++.+.+++++.||
T Consensus 348 ~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Ri 427 (447)
T KOG0259|consen 348 RLKDIPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRI 427 (447)
T ss_pred HHhcCCCcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHH
Confidence 99999999988899999999999988777777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 014603 412 KAFYDRHAK 420 (422)
Q Consensus 412 ~~~~~~~~~ 420 (422)
+.+..+..+
T Consensus 428 k~Fc~RH~~ 436 (447)
T KOG0259|consen 428 KEFCDRHSK 436 (447)
T ss_pred HHHHHhhhh
Confidence 999877653
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=459.48 Aligned_cols=422 Identities=67% Similarity=1.192 Sum_probs=357.4
Q ss_pred CCCCCCCC-----CCCcCccccHH-HhhccCccHHHHHHHHHhhhhccC-CCCceeecCCCCCCCCCCCCcHHHHHHHHH
Q 014603 1 MENGGGAN-----GNQWGFKANEE-LKTASGITVRGVLNSLLENLNKND-TRPLIPLGHGDPSAFPSFRTASVAVDAIVH 73 (422)
Q Consensus 1 ~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~ 73 (422)
||||||-. ++.|.+..+.+ +.......+|..+..+........ +.++|+|++|+|+.++.+++++++.+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~ 80 (430)
T PLN00145 1 MEGGGGGGGGGHATARWRFERANAALAAAGALSIRAVLNRVKACVDAGGGPRPVLPLGHGDPSAFPCFRTAPEAEDAVAA 80 (430)
T ss_pred CCCCCCCCCCCCccccccccCchhhHHHhcccchhhHHHHHHHhhhcccCCCCeeeCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 99999985 57788988874 455555668887766666655543 789999999999987778999999999999
Q ss_pred HhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhh
Q 014603 74 SVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATH 153 (422)
Q Consensus 74 ~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~ 153 (422)
.+.....+.|++..|.+++|+++++++++.++.++++++|++|+|+++++..++.++.++||+|++++|+|+.|...+..
T Consensus 81 al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~ 160 (430)
T PLN00145 81 ALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVF 160 (430)
T ss_pred HHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH
Confidence 88765566899988999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 014603 154 SHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT 233 (422)
Q Consensus 154 ~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~ 233 (422)
.|.+++.+++.++++|.+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~ 240 (430)
T PLN00145 161 SGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK 240 (430)
T ss_pred cCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCC
Confidence 99999999887777889999999999888999999999999999999999999999999999999999999999888765
Q ss_pred CCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHH
Q 014603 234 PFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 234 ~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
...++..+...+++++++||||.|++||+|+||++++++..+....++...++........++.+.|.++..+|+...+.
T Consensus 241 ~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~ 320 (430)
T PLN00145 241 PFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEE 320 (430)
T ss_pred CccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHH
Confidence 55555555555689999999999999999999999865433221112334444444444456789999999999864568
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeE
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL 393 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 393 (422)
++++.++.++++++.+.+.|++++++.+...|++++|+|++++...+++..++.+++..+++++||.+.||..|+..+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~l 400 (430)
T PLN00145 321 FFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWL 400 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeE
Confidence 89999999999999999999998888744579999999999875322222256778888888999999999999989999
Q ss_pred EEEeccChHHHHHHHHHHHHHHHHhcccC
Q 014603 394 RITFAVEPSALEDGLGRMKAFYDRHAKKQ 422 (422)
Q Consensus 394 Ris~~~~~~~l~~~~~~l~~~~~~~~~~~ 422 (422)
||+++.+.+++++++++|.+++.++.+++
T Consensus 401 Ris~~~~~~~l~~al~rl~~~~~~~~~~~ 429 (430)
T PLN00145 401 RITFAIDPPSLEDGLERLKSFCLRHAKLA 429 (430)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 99999989999999999999999987763
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-59 Score=446.13 Aligned_cols=409 Identities=56% Similarity=1.043 Sum_probs=346.2
Q ss_pred CCcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCC
Q 014603 10 NQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGI 89 (422)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~ 89 (422)
+.|.++.+..+.......||.+...+......+.++++|+|++|+|+..+.+.+++++.+++.+.+..+....|++..|.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~ 110 (462)
T PLN02187 31 SVWRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGI 110 (462)
T ss_pred cccccCcchhhhhhhhchHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCh
Confidence 44889999888888878999998878776666678999999999998767678889999999998876656689888999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCc
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGW 169 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (422)
+++|+++|+++++.++.++++++|++|+|+++++..++++++++||+|++++|+|+.|...+...|.+++.+++.++++|
T Consensus 111 ~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~ 190 (462)
T PLN02187 111 LPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEW 190 (462)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCC
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999998766778
Q ss_pred ccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 170 EVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 170 ~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
.+|++.|++.++++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++..+.++..+....++++
T Consensus 191 ~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~ 270 (462)
T PLN02187 191 EIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLT 270 (462)
T ss_pred ccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEE
Confidence 99999999988888999999999999999999999999999999999999999999998887654445555544456999
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 326 (422)
++||||.|++||+|+||++++++..+. ++++.+..... ...+++.+.|.++.++|+...+.++++.++.+++++
T Consensus 271 l~SfSK~f~~pGlRiG~~v~~~p~~~~---~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r 347 (462)
T PLN02187 271 LAGISKGWVVPGWKIGWIALNDPEGVF---ETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNV 347 (462)
T ss_pred EecchhhcCCccceeEEEEecCchhHH---HHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 999999999999999999986432111 12334444432 222457899999999997544688999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHH
Q 014603 327 DICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALED 406 (422)
Q Consensus 327 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~ 406 (422)
+.+.+.|++++++.++..|++|+|+|++++.....+..++.+++..+++++||.+.||..|+..+++||+++.+++++++
T Consensus 348 ~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~ 427 (462)
T PLN02187 348 DLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLED 427 (462)
T ss_pred HHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHH
Confidence 99999999986554344688899999988642222222456777788888999999999998889999999998999999
Q ss_pred HHHHHHHHHHHhccc
Q 014603 407 GLGRMKAFYDRHAKK 421 (422)
Q Consensus 407 ~~~~l~~~~~~~~~~ 421 (422)
++++|.++++++.++
T Consensus 428 al~rL~~~l~~~~~~ 442 (462)
T PLN02187 428 ALERLKGFCTRHAKK 442 (462)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999887765
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=433.64 Aligned_cols=379 Identities=27% Similarity=0.470 Sum_probs=327.6
Q ss_pred ccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhh
Q 014603 23 ASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNR 102 (422)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 102 (422)
..++..........+........++|+|++|+|+ ++.|+.+++++.+.+.++.. .|.+..|+++||++|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~vi~l~iG~Pd----~~~p~~i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~ 80 (393)
T COG0436 6 VLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEPD----FPTPEHIIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKR 80 (393)
T ss_pred cCcchhHHHHhHHHHHHHhcCCCCEEEeCCCCCC----CCCCHHHHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHH
Confidence 3344455555422222222222689999999976 78999999999999887544 677999999999999999999
Q ss_pred cCCCCCCCCC-EEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC-CCcccCHHHHHHhh
Q 014603 103 DLPYKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA-KGWEVDLDAVEALA 180 (422)
Q Consensus 103 ~~~~~~~~~~-i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~ 180 (422)
.++..+++++ |++|+|+++|+..++.+++.+||+|++++|.|..|....+..|.+++.+++... ++|.+|++.|++.+
T Consensus 81 ~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i 160 (393)
T COG0436 81 RYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAI 160 (393)
T ss_pred HhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhc
Confidence 9998888877 999999999999999999999999999999999999999999999999998655 48999999999999
Q ss_pred cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCC
Q 014603 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIV 259 (422)
Q Consensus 181 ~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~ 259 (422)
+++++++++++||||||.+++++++++|+++|++||++||.||+|..+.|++..+.++..+.. .+++|.+.||||.|++
T Consensus 161 ~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~m 240 (393)
T COG0436 161 TPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGM 240 (393)
T ss_pred CccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccc
Confidence 999999999999999999999999999999999999999999999999999864445555544 4689999999999999
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
+|||+||+++++ +++++.+.... ....+++.+.|.++.++|+... ...++..++.++++++.+.+.|.+++
T Consensus 241 tGwRvG~~v~~~-------~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~ 313 (393)
T COG0436 241 TGWRIGWVVGPP-------EELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIG 313 (393)
T ss_pred cccceeEeecCh-------HHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999864 46778777555 3456889999999999999743 36778888999999999999999998
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC---CeEEEEeccChHHHHHHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK---DWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
++.+...|.+++|+|+.++.. .++.+++.+|++++||.|.||..|+.. +++|+|++.+.+++++++++|.++
T Consensus 314 g~~~~~~p~Ga~Y~~~~i~~~-----~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~ 388 (393)
T COG0436 314 GLSVVKPPEGAFYLFPKIPEL-----LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARF 388 (393)
T ss_pred CeeeccCCCeeEEEEeecCCC-----CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHH
Confidence 888564488999999999753 378999999999999999999999974 899999998889999999999999
Q ss_pred HHHh
Q 014603 415 YDRH 418 (422)
Q Consensus 415 ~~~~ 418 (422)
++.+
T Consensus 389 ~~~~ 392 (393)
T COG0436 389 LAEY 392 (393)
T ss_pred HHhc
Confidence 8764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=426.87 Aligned_cols=395 Identities=68% Similarity=1.185 Sum_probs=331.9
Q ss_pred HHHHHHHHHhhh-hccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCC
Q 014603 28 VRGVLNSLLENL-NKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106 (422)
Q Consensus 28 ~~~~~~~~~~~~-~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~ 106 (422)
|+..+..++... ++.++.++|+|+.|+|+..+.+++++.+++++.+.+.......|++..|.+++|+++++++++.+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~ 92 (409)
T PLN02656 13 IKGILSLLMESIDDEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPY 92 (409)
T ss_pred hhhHHHHHHHhccccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 666666665544 4557899999999998865557889999999999887655678999899999999999999988888
Q ss_pred CCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceE
Q 014603 107 KLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186 (422)
Q Consensus 107 ~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 186 (422)
.+++++|++|+|+++++..++.+++++||+|++++|+|+.+...+...|++++.+++.+++++.+|++.+++.+++++++
T Consensus 93 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (409)
T PLN02656 93 KLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVA 172 (409)
T ss_pred CCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceE
Confidence 89999999999999999999999999999999999999999888888999999999866667889999999988888999
Q ss_pred EEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEE
Q 014603 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 187 i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
+++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++....++..++..+++++++||||.|++||+|+||
T Consensus 173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~ 252 (409)
T PLN02656 173 LVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGW 252 (409)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEE
Confidence 99999999999999999999999999999999999999999888765444544455556799999999999999999999
Q ss_pred EEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 014603 267 LVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 346 (422)
++++++..+...+++++++........+++.+.|.++..+|++..+.++++.++.++++++.+.+.|++++++..+..|+
T Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~ 332 (409)
T PLN02656 253 FVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPE 332 (409)
T ss_pred EEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCC
Confidence 99864322211146777777665444467889999999999754467899999999999999999999886544234789
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHhcccC
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~~~ 422 (422)
+|+|+|++++.....+..++.+++..+++++||.+.||..|+.++++||+++.+++++++++++|++++.++..+|
T Consensus 333 gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~~~ 408 (409)
T PLN02656 333 GSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ 408 (409)
T ss_pred eEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999986422111123456666777888999999999988899999999989999999999999998887654
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=420.40 Aligned_cols=394 Identities=69% Similarity=1.163 Sum_probs=324.7
Q ss_pred HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCC
Q 014603 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107 (422)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~ 107 (422)
|+.....++..+....++++|+|+.|+|+.+..+++++.+.+++.+.+.....+.|++..|.+++|+++++++.+.+|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~ 94 (409)
T PLN00143 15 IDDAVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQ 94 (409)
T ss_pred HHHHHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence 55555455544555678999999999987555578999999999998876556689888999999999999999888888
Q ss_pred CCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 108 LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 108 ~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
+++++|++|+|+++++..++++++++||.|++++|+|+.+...++..|.+++.+++.+++++.+|++.|+++++++++++
T Consensus 95 ~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 174 (409)
T PLN00143 95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAM 174 (409)
T ss_pred CCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEE
Confidence 99999999999999999999999999999999999999999999999999999988656678899999999888889999
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
++++||||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+...+++++++||||.|++||+|+||+
T Consensus 175 ~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~ 254 (409)
T PLN00143 175 VIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWL 254 (409)
T ss_pred EEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEE
Confidence 99999999999999999999999999999999999999998887644344444555567999999999999999999999
Q ss_pred EeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 268 VTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++++....+..+..+.+.........++.+.|.++..+|++..+.++++.+++++++++.+.+.|+++++..+...|.+
T Consensus 255 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~g 334 (409)
T PLN00143 255 VTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEG 334 (409)
T ss_pred EeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCe
Confidence 98643221111122344444333233457789999999997544678899999999999999999998855442346889
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHhccc
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
|+|+|++++.....+..++.+++..+++++||.+.||..|+..+++||+++.+++++++++++|+++++++.++
T Consensus 335 g~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~~ 408 (409)
T PLN00143 335 AFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408 (409)
T ss_pred eEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999742111122466777778888899999999998889999999988999999999999999887654
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=404.49 Aligned_cols=402 Identities=34% Similarity=0.602 Sum_probs=326.1
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHH
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~ 91 (422)
|....+.|+.+.. ..++.+...+... .++.++|+|+.|.|+..+.+.+++.+.+++.+.+.......|++..|.++
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~ 79 (412)
T PTZ00433 4 WDVSMSKHAGRVF-NPLRTVTDNAKPS---PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPE 79 (412)
T ss_pred ccccccHHHHhhh-ccHHHHHHhhccC---CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHH
Confidence 4455555555543 3344444334322 36889999999998744445678999999998877544568999889999
Q ss_pred HHHHHHHHHhhcC------CCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC
Q 014603 92 ARRAIADYLNRDL------PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165 (422)
Q Consensus 92 lr~~ia~~l~~~~------~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (422)
||+++++++++.+ +..+++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.+++++
T Consensus 80 Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~ 159 (412)
T PTZ00433 80 AREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRP 159 (412)
T ss_pred HHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCc
Confidence 9999999998743 4568899999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 166 ~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
++++++|++.+++.++++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+....
T Consensus 160 ~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 239 (412)
T PTZ00433 160 EKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTV 239 (412)
T ss_pred cccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCC
Confidence 66788999999998888899999999999999999999999999999999999999999999888664434444554444
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
++++++||||.|++||+|+||++++++.... +++++.+........+++.+.|.++..++.+..+.++++.++.++++
T Consensus 240 ~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 317 (412)
T PTZ00433 240 PRVILGGTAKNLVVPGWRLGWLLLVDPHGNG--GDFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEG 317 (412)
T ss_pred ceEEEccchhhcCCCCeeEEEEEEeCCcccH--HHHHHHHHHHhhccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6899999999999999999999974332111 34666666654433467889999999998754468899999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHH
Q 014603 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALE 405 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~ 405 (422)
++.+.+.|+++.++. +..|++|+|+|++++.....+..++.+++..+++++||.+.||..|+..+++||+++.++++++
T Consensus 318 r~~l~~~L~~~~~~~-~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~ 396 (412)
T PTZ00433 318 AMVLYNHIGECIGLS-PTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLR 396 (412)
T ss_pred HHHHHHHHhcCCCCc-ccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHH
Confidence 999999999876666 5578899999999874211111245678888877789999999999888999999998889999
Q ss_pred HHHHHHHHHHHHhcc
Q 014603 406 DGLGRMKAFYDRHAK 420 (422)
Q Consensus 406 ~~~~~l~~~~~~~~~ 420 (422)
+++++|.++++.+++
T Consensus 397 ~al~~l~~~~~~~~~ 411 (412)
T PTZ00433 397 EAVERIKAFCERHKK 411 (412)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=401.94 Aligned_cols=400 Identities=38% Similarity=0.744 Sum_probs=326.6
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHH
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~ 91 (422)
|+++.+++.++-.+. ++.+....+.+. +.+.++++|+.|.|.....+++++.+.+++.+.+.......|.+..|.++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~ 77 (401)
T TIGR01264 1 WSVKPSDHSKNTVNP-IRAIVDNMKVKP--NPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALS 77 (401)
T ss_pred CCcChHHHHhhhhhH-HHHHHHHHHhhh--hcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHH
Confidence 777788776665544 777776555432 23578899999998633346788999999998877654567988899999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 92 lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
+|+++++++.+. +..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++.++++++
T Consensus 78 lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~ 156 (401)
T TIGR01264 78 AREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEI 156 (401)
T ss_pred HHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCC
Confidence 999999999863 4468889999999999999999999999999999999999999999999999999998866667889
Q ss_pred CHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 172 DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 172 d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
|++.+++.++++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+....++++++
T Consensus 157 d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 236 (401)
T TIGR01264 157 DLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCG 236 (401)
T ss_pred CHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEc
Confidence 99999998887889999999999999999999999999999999999999999999888765444555554444689999
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
||||.|+++|+|+||++++++.... .++++.+........+++.+.|.++..+|.+..+.++++.++.++++++.+.+
T Consensus 237 SfSK~~~~~GlRiG~iv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~ 314 (401)
T TIGR01264 237 GLAKRWLVPGWRLGWIIIHDRRGIL--RDIRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYG 314 (401)
T ss_pred cCcccCCCccceEEEEEecCcchhH--HHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987432111 23445454443323466789999999999754468899999999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l 411 (422)
.|++++++. +..|.+|+|+|++++....++..++.+++..+++++||.+.||..|+..+++||+++.+++++++++++|
T Consensus 315 ~L~~~~~~~-~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl 393 (401)
T TIGR01264 315 ALAAVPGLR-PVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRI 393 (401)
T ss_pred HHHhCCCCc-ccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 999987776 4579999999999864211122246677787777889999999999878999999998889999999999
Q ss_pred HHHHHHh
Q 014603 412 KAFYDRH 418 (422)
Q Consensus 412 ~~~~~~~ 418 (422)
.++++++
T Consensus 394 ~~~~~~~ 400 (401)
T TIGR01264 394 QEFCERH 400 (401)
T ss_pred HHHHhcc
Confidence 9988653
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=399.68 Aligned_cols=402 Identities=53% Similarity=0.976 Sum_probs=332.0
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHH
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~ 91 (422)
|.++.+++.+.- ...|+.+++.+.+.. ..+.++|+|+.|+|...+.+++++.+.+++.+.+.......|++..|.++
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~ 77 (403)
T TIGR01265 1 WNFKGSDHAKKT-VNPIRAIVDNLKVKP--NPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALA 77 (403)
T ss_pred CCCchHHHHHHH-HHHHHHHHHHHHHHH--hcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHH
Confidence 556667655543 356778776665542 23688999999998755668889999999999887655568988899999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 92 lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
+|++++++++...+..+++++|++|+|+++++..++++++++||+|++++|+|..+...+...|.+++.+++.+.+++.+
T Consensus 78 lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 157 (403)
T TIGR01265 78 AREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEI 157 (403)
T ss_pred HHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCcc
Confidence 99999999998777778899999999999999999999999999999999999999999999999999888866566789
Q ss_pred CHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 172 DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 172 d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
|++.+++.+.++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++....++..+....++++++
T Consensus 158 d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 237 (403)
T TIGR01265 158 DLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLG 237 (403)
T ss_pred CHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEe
Confidence 99999998888899999999999999999999999999999999999999999999888765444555565555799999
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
||||.|++||+|+||++++++...+. +++.+.+.........++.+.|.++..+|++..+.++++.+++++++++.+.+
T Consensus 238 S~SK~~~~pGlRiG~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 316 (403)
T TIGR01265 238 GISKRWVVPGWRLGWIIIHDPHGIFR-DTVLQGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYE 316 (403)
T ss_pred ecccccCCCcceEEEEEEeCchhhhH-HHHHHHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865321110 12444454444333467889999999999764568899999999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l 411 (422)
.|+.++++. +..|.+|+|+|++++.....+..++.+++..+++++||.+.||..|+..+++||+++.+++++++++++|
T Consensus 317 ~L~~~~~~~-~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l 395 (403)
T TIGR01265 317 ELKDIPGLV-CPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRI 395 (403)
T ss_pred HHhcCCCce-ecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHH
Confidence 999987776 4478999999999975321111246777788778889999999999888999999998889999999999
Q ss_pred HHHHHHh
Q 014603 412 KAFYDRH 418 (422)
Q Consensus 412 ~~~~~~~ 418 (422)
.+++.++
T Consensus 396 ~~~~~~~ 402 (403)
T TIGR01265 396 KEFCERH 402 (403)
T ss_pred HHHHHhc
Confidence 9988654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=412.13 Aligned_cols=398 Identities=23% Similarity=0.447 Sum_probs=322.8
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHH
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~ 91 (422)
|.++++.|+.....+.++.+...+.+. +..|.++|+|+.|+|..+ ++++|+.+.+++.+.+.. ...|++..|.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~i~l~~G~p~~~-~~~~p~~~~~~~~~~~~~--~~~Y~~~~G~~~ 189 (517)
T PRK13355 115 RTFKKSHKLDNVLYDVRGPVVDEANRM--EAAGTHILKLNIGNPAPF-GFRTPDEVVYDMAQQLTD--TEGYSDSKGLFS 189 (517)
T ss_pred cCCChhHHhhccCccHHHHHHHHHHHH--HHcCCCeEEecCcCCCcC-CCCCCHHHHHHHHHHhhc--CCCCCCCcChHH
Confidence 567789999999988776666544433 235889999999998642 367789999999887754 357999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 92 lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
||++|++++.+..+.++++++|++|+|+++++..++.+++++||+|+++.|+|+.|...++..|.+++.++.+++++|.+
T Consensus 190 lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~ 269 (517)
T PRK13355 190 ARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYP 269 (517)
T ss_pred HHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCC
Confidence 99999999987766568899999999999999999999999999999999999999999999999999999877777899
Q ss_pred CHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 172 DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 172 d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
|++.+++.++++++++++++|+||||.+++.+++++|+++|++||++||+||+|..+.|++....++..+..+..+++++
T Consensus 270 d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~ 349 (517)
T PRK13355 270 DIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFS 349 (517)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEe
Confidence 99999999988999999999999999999999999999999999999999999999988765545555554443477889
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADIC 329 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 329 (422)
||||.|+++|+|+||++++.+..+. +++++.+........+.+.++|.++..+|.... ..++.+. .++.++++.+
T Consensus 350 S~SK~~~~~G~RiG~~i~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l 426 (517)
T PRK13355 350 GLSKSHMIAGYRIGWMILSGNKRIA--KDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELV 426 (517)
T ss_pred cchhhccCcccceEEEEeeCchhhH--HHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999975322111 123444433333334677889999999996421 3455554 3445668999
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDG 407 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~ 407 (422)
.+.|+++|++. +..|.+++|+|++++..... ..++.+++..+++++||.|.||..|+. ++++||+++.++++|+++
T Consensus 427 ~~~L~~~~g~~-~~~p~g~fy~~~~l~~~~~~-~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a 504 (517)
T PRK13355 427 YNALNAIPGIS-AVKPKAAFYIFPKIDVKKFN-IHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDA 504 (517)
T ss_pred HHHHhcCCCcc-cCCCCeeeEEEeecCcccCC-CCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHH
Confidence 99999988888 55899999999888642111 124567777888889999999999863 689999999899999999
Q ss_pred HHHHHHHHHHhc
Q 014603 408 LGRMKAFYDRHA 419 (422)
Q Consensus 408 ~~~l~~~~~~~~ 419 (422)
+++|.+++..++
T Consensus 505 ~~rl~~~~~~~~ 516 (517)
T PRK13355 505 MDRLADFFSYYR 516 (517)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-52 Score=394.55 Aligned_cols=376 Identities=26% Similarity=0.433 Sum_probs=319.9
Q ss_pred CccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHH
Q 014603 13 GFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA 92 (422)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l 92 (422)
.+.++.|+.....+.++.+.... .+.++|+|+.|.|. +++++.+.+++.+.+.+. ...|++..|.++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~G~P~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~L 96 (413)
T PLN00175 29 PLQVAKRLEKFKTTIFTQMSSLA-------IKHGAINLGQGFPN----FDGPDFVKEAAIQAIRDG-KNQYARGFGVPEL 96 (413)
T ss_pred ccchhHHhhcCCCCHHHHHHHHh-------hcCCeEecCCCCCC----CCCCHHHHHHHHHHHhcC-CCCcCCCCCCHHH
Confidence 36678899888888887766543 34579999999976 567889999999888763 4689999999999
Q ss_pred HHHHHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 93 RRAIADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 93 r~~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
|+++++++++.+|+.++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++++++ ++.+
T Consensus 97 r~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~ 175 (413)
T PLN00175 97 NSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPP-DFAV 175 (413)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcc-cCCC
Confidence 9999999998888888887 7999999999999999999999999999999999999999999999999998653 3789
Q ss_pred CHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEE
Q 014603 172 DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTL 250 (422)
Q Consensus 172 d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i 250 (422)
|++.|++.+.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++. ..++..+.. .++++++
T Consensus 176 ~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i 254 (413)
T PLN00175 176 PEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTM 254 (413)
T ss_pred CHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEE
Confidence 99999999888899999999999999999999999999999999999999999999888653 224444432 4679999
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
+||||.|+++|+|+||++++ +++++.+..... ...+++.+.|.++..+|+.. +.++++.++.++++++.+
T Consensus 255 ~SfSK~~~~~G~RiG~~v~~--------~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l 325 (413)
T PLN00175 255 NSLGKTFSLTGWKIGWAIAP--------PHLTWGVRQAHSFLTFATATPMQWAAVAALRAP-ESYYEELKRDYSAKKDIL 325 (413)
T ss_pred ecchhhccCcchheeeeEeC--------HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 467888877654 34577889999999999753 578899999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-----CCeEEEEeccChHHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAVEPSAL 404 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~~~~~~l 404 (422)
.+.|+++ ++. +..|.+++|+|++++.. +..++.+++..+++++||.+.||..|+. .+++||+++.+++++
T Consensus 326 ~~~L~~~-g~~-~~~p~g~~f~~~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l 400 (413)
T PLN00175 326 VEGLKEV-GFK-VYPSSGTYFVMVDHTPF---GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETL 400 (413)
T ss_pred HHHHHHC-CCe-ecCCCeeEEEEEecccc---CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHH
Confidence 9999997 676 44788899999987421 1114677888888888999999988742 469999999889999
Q ss_pred HHHHHHHHHHHH
Q 014603 405 EDGLGRMKAFYD 416 (422)
Q Consensus 405 ~~~~~~l~~~~~ 416 (422)
++++++|.++++
T Consensus 401 ~~~~~rL~~~~~ 412 (413)
T PLN00175 401 RAAVERMKTKLK 412 (413)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=391.72 Aligned_cols=387 Identities=22% Similarity=0.369 Sum_probs=307.6
Q ss_pred HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCC
Q 014603 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107 (422)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~ 107 (422)
++.+.....+. +..+.++++|+.|+|..+ .+++|+.+.+++.+.+.......|.+..|.+++|+++++++.+.+|+.
T Consensus 17 ~~~~~~~~~~~--~~~g~~~~~~~~G~p~~~-~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~ 93 (433)
T PRK06855 17 IRNIVAVAKKL--EKLGVKITWENIGDPIAK-GEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQ 93 (433)
T ss_pred HHHHHHHHHHH--HhccccccccccCCCccc-CCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCC
Confidence 45544433322 234678999999998531 368889999999988765555689999999999999999999988888
Q ss_pred CCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH-hhCCCeEEEeeccCCCCcccCHHHHHHhhc--CCc
Q 014603 108 LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA-THSHLEVRHFDLLPAKGWEVDLDAVEALAD--ENT 184 (422)
Q Consensus 108 ~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~ 184 (422)
+++++|++|+|+++++..++. ++.+||.|++++|+|+.+.... ...|..++.++++++++|.+|++.|++.++ +++
T Consensus 94 ~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~ 172 (433)
T PRK06855 94 ITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSI 172 (433)
T ss_pred CCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCc
Confidence 999999999999999999985 7889999999999999876543 345888888888766778899999999886 357
Q ss_pred eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee
Q 014603 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~ 264 (422)
+++++++|+||||.++|.+++++|+++|+++|++||+||+|..+.|++..+.++..+..+.++++++||||.|++||+|+
T Consensus 173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRi 252 (433)
T PRK06855 173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRC 252 (433)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceE
Confidence 88999999999999999999999999999999999999999999887654555555544446799999999998999999
Q ss_pred EEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014603 265 GWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPK 343 (422)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 343 (422)
||++++++........+++.+........+++.+.|.++.+++++.. +.++++.++.++++++.+.+.|++++++. +.
T Consensus 253 G~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~-~~ 331 (433)
T PRK06855 253 GWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK-VN 331 (433)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-cc
Confidence 99998532100000123333333332234567899999999998643 67899999999999999999999887776 55
Q ss_pred CCCCceEEEEecCcccc---------------------cC-CCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEEec-c
Q 014603 344 KPEGSMFVMVKLNYSLL---------------------EG-INSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFA-V 399 (422)
Q Consensus 344 ~~~~g~~~~~~~~~~~~---------------------~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~-~ 399 (422)
.|.+|+|+|++++.... .+ ..++.+++..++++.||.+.||..|+. .+++|||++ .
T Consensus 332 ~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~ 411 (433)
T PRK06855 332 RTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLER 411 (433)
T ss_pred CCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCC
Confidence 78999999999985310 00 013566777788889999999999965 357999999 5
Q ss_pred ChHHHHHHHHHHHHHHHHhc
Q 014603 400 EPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 400 ~~~~l~~~~~~l~~~~~~~~ 419 (422)
++++|++++++|.++++++-
T Consensus 412 ~~~~i~~~~~~l~~~~~~~~ 431 (433)
T PRK06855 412 DEEKFEWIYQTLAEKIEEYL 431 (433)
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998753
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=388.77 Aligned_cols=359 Identities=21% Similarity=0.296 Sum_probs=304.0
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQA 122 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a 122 (422)
+.+.|+|++|.|.. +++++.+.+++.+.+.......|++..|.+++|++|++++.+.+|..+++ ++|++|+|++++
T Consensus 38 ~~~~i~l~~g~~~~---~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~a 114 (405)
T PRK06207 38 PGRPVDFSHGDVDA---HEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGA 114 (405)
T ss_pred CCCceecCCcCCCC---CCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 66789999999762 35667888888888766545689988999999999999999888877888 899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc---CCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccc
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL---PAKGWEVDLDAVEALADENTVALVIINPGNPCGNV 199 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~ 199 (422)
+..++++++++||+|++++|+|+.+...++..|.+++.++++ +++++++|++.|++.++++++++++++|+||||.+
T Consensus 115 l~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~ 194 (405)
T PRK06207 115 LFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVV 194 (405)
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcC
Confidence 999999999999999999999999999999999999988875 23467899999999888889999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
++.+++++|+++|+++|++||+||+|..+.|++....++..+. ..+++++++||||.|++||+|+||++++
T Consensus 195 ~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~-------- 266 (405)
T PRK06207 195 YSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS-------- 266 (405)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC--------
Confidence 9999999999999999999999999999988765444444332 2368999999999999999999999986
Q ss_pred hhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc
Q 014603 279 SGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
+++++++...... ..+.+.+.|.++..+|++. ..++++..+.++++++.+.+.|++++++. +..|++|+|+|++++.
T Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~gg~fl~~~l~~ 344 (405)
T PRK06207 267 PAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVEGVF-VRAPQAGSYLFPRLPR 344 (405)
T ss_pred HHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCeeEEEEEeCcc
Confidence 4688888776543 3356678899999999752 35677788888889999999999887777 5478889999999974
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.. .++.++...+++++||.+.||..|+. .+++|||++.+.+++++++++|.+++++++
T Consensus 345 ~~----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 345 LA----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred cC----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 21 14667777776678999999998864 689999999888999999999999998764
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=388.25 Aligned_cols=376 Identities=22% Similarity=0.344 Sum_probs=314.9
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.|+.....+.++.+.....+. ...+.++|+|+.|.|. +++++.+.+++.+.+.......|+ ..|.+++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~a 77 (399)
T PRK07681 5 LATRMKAFQSSIFSELGAYKKEK--IAAGHKMIDLSIGNPD----MPPADFVREEMVHTANQKESYGYT-LSGIQEFHEA 77 (399)
T ss_pred HhHHHhhcCccHHHHHHHHHHHh--hhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHH
Confidence 45677776766677666543322 2246789999999966 567788999998877653334555 4789999999
Q ss_pred HHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 96 IADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 96 ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
|++++++.+|+.+++ ++|++|+|+++++..++.+++++||+|++++|+|+.+...++..|.+++.+++++++++.+|++
T Consensus 78 ia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 157 (399)
T PRK07681 78 VTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLE 157 (399)
T ss_pred HHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHH
Confidence 999999888888898 8999999999999999999999999999999999999999999999999999876667888999
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecC
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSI 253 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~ 253 (422)
.+++.+.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+.. .+++++++||
T Consensus 158 ~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 237 (399)
T PRK07681 158 LIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSL 237 (399)
T ss_pred HHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeec
Confidence 999888778999999999999999999999999999999999999999999998876654444444432 3578999999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
||.|+++|+|+||++++ +++++.+..... ...+++.+.|.++..+|++. ..++++.++.++++++.+.+.
T Consensus 238 SK~~~~~GlRiG~~i~~--------~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~ 308 (399)
T PRK07681 238 SKSYSLAGSRIGYMIGN--------EEIVRALTQFKSNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDG 308 (399)
T ss_pred ccccCCccceeEEEecC--------HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 568888877654 34467888999999999763 467888889999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~ 410 (422)
|+++ ++. +..|.+|+|+|++++.. .++.++...+++++||.+.||..|+. .+++||+++.+.+++++++++
T Consensus 309 L~~~-g~~-~~~p~~g~f~~~~l~~~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~ 381 (399)
T PRK07681 309 FRTF-GWN-VDKPAGSMFVWAEIPKG-----WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVEN 381 (399)
T ss_pred HHHC-CCc-ccCCCeeeEEEEECCCC-----CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHH
Confidence 9998 776 44788899999999742 25677888888778999999998865 479999999888999999999
Q ss_pred HHHH
Q 014603 411 MKAF 414 (422)
Q Consensus 411 l~~~ 414 (422)
|+++
T Consensus 382 l~~~ 385 (399)
T PRK07681 382 IRNS 385 (399)
T ss_pred HHHh
Confidence 9983
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=388.63 Aligned_cols=379 Identities=18% Similarity=0.290 Sum_probs=307.1
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++|++.++...+..+.. ..+.. +..+.++|+|+.|++. +++++.+.+++.+.+.......|++..|.++||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai 77 (388)
T PRK07366 4 AQRLQPLQSNVFADMDR-AKAQA-RAAGKELIDLSLGSSD----LPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAA 77 (388)
T ss_pred hhhhhcCCccHHHHHHH-HHHHH-HhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHH
Confidence 45676666554444433 33222 2247789999999965 677889999999887654456798889999999999
Q ss_pred HHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++.+.+|++++++ +|++|+|+++++..++++++.+||+|++++|+|+.+...++..|.+++.+++++++++.+|++.
T Consensus 78 a~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 157 (388)
T PRK07366 78 AQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFAD 157 (388)
T ss_pred HHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHH
Confidence 999998888889998 6999999999999999999999999999999999999999999999999998766678889999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CCCccccCCC-CCeEEEecC
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP-FVPMGVFGSI-VPVLTLGSI 253 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~-~~~~~~~~~~-~~~i~i~s~ 253 (422)
+++.+.++++++++++||||||.+++.+++++|+++|+++|++||+||+|..+.+++.. ..++..++.. +++++++||
T Consensus 158 l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~Sf 237 (388)
T PRK07366 158 IPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTL 237 (388)
T ss_pred HHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeec
Confidence 98877778899999999999999999999999999999999999999999998886643 3344444332 468999999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhcc-CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS-DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
||.|++||+|+||++++ +++++++........ +.....+.++.+++.. .+.++++.++.++++++.+.+.
T Consensus 238 SK~~g~~GlRiG~~v~~--------~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~ 308 (388)
T PRK07366 238 SKSYNMGGFRIGFAIGN--------AQLIQALRQVKAVVDFNQYRGILNGAIAALTG-PQATVQQTVQIFRQRRDAFINA 308 (388)
T ss_pred ccccCCcchhheehcCC--------HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 578888877664322 2223334444455542 2578999999999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~ 410 (422)
|+++ ++. +..|++|+|+|++++... ..++.++...+++++||.+.||..|+. .+++||+++.+++++++++++
T Consensus 309 L~~~-~~~-~~~p~~g~f~~~~~~~~~---~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~r 383 (388)
T PRK07366 309 LHQI-GWP-VPLPEATMYVWAKLPEPW---QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVER 383 (388)
T ss_pred HHHC-CCc-ccCCCeeEEEEEECCccc---CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHH
Confidence 9988 665 447899999999997421 013566777777888999999998865 479999999889999999999
Q ss_pred HHHHH
Q 014603 411 MKAFY 415 (422)
Q Consensus 411 l~~~~ 415 (422)
|.+++
T Consensus 384 l~~~l 388 (388)
T PRK07366 384 IAAFL 388 (388)
T ss_pred HHHhC
Confidence 98753
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=386.01 Aligned_cols=379 Identities=20% Similarity=0.338 Sum_probs=318.9
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
.++.+++++.++.++++.....+. ...++++++|+.|.|+ +++++.+.+++.+.+... ...|.+..|.+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~-~~~Y~~~~g~~~lr~ 76 (387)
T PRK08960 4 GYSRRSRDIEPFHVMALLARANEL--EAAGHDVIHLEIGEPD----FTTAEPIVAAGQAALAAG-HTRYTAARGLPALRE 76 (387)
T ss_pred chhhHHHhCCchHHHHHHHHHHHH--HhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhcC-CCccCCCCCCHHHHH
Confidence 346678888888888888655432 1246789999999966 677899999999988753 347888899999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
++++++.+.+|.++++++|++|+|++++++.++.+++++||+|++++|+|+.+...+...|.+++.++++.++++.+|++
T Consensus 77 ~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 156 (387)
T PRK08960 77 AIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPA 156 (387)
T ss_pred HHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHH
Confidence 99999998888889999999999999999999999999999999999999999999999999999999876667789999
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCc
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS 254 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s 254 (422)
.+++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++. ..++.. .++++++++|||
T Consensus 157 ~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~--~~~~vi~~~S~S 233 (387)
T PRK08960 157 LVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLE--VDDDAFVLNSFS 233 (387)
T ss_pred HHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhh--ccCCEEEEeecc
Confidence 99998888889999999999999999999999999999999999999999998877543 223322 345799999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|+++|+|+||++++ +++++.+..... ...+++.+.|.++..++....+.++++.++.++++++.+.+.|
T Consensus 234 K~~g~~GlRiG~~~~~--------~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L 305 (387)
T PRK08960 234 KYFGMTGWRLGWLVAP--------PAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPAL 305 (387)
T ss_pred cccCCcccEEEEEEcC--------HHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 467787776654 3446688899999888875335788889999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEeccChHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~l~~~~~~ 410 (422)
+++ ++.++..|.+|+|+|++++... .++.++...+++++||.+.||..|+. .+++||+++.+.+++.+++++
T Consensus 306 ~~~-~~~~~~~p~g~~f~~~~~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~ 380 (387)
T PRK08960 306 REL-GFGIAVEPQGAFYLYADISAFG----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVER 380 (387)
T ss_pred Hhc-CCcCCcCCCeeEEEEEeccccC----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHH
Confidence 987 5553346888999999987411 25677777777788999999998875 469999999888999999999
Q ss_pred HHHHHH
Q 014603 411 MKAFYD 416 (422)
Q Consensus 411 l~~~~~ 416 (422)
|.++++
T Consensus 381 l~~~~~ 386 (387)
T PRK08960 381 IARGLR 386 (387)
T ss_pred HHHHHh
Confidence 988764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=382.90 Aligned_cols=375 Identities=25% Similarity=0.429 Sum_probs=310.7
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
+.|+.....+.+..+.+.+.+. ...++++++|+.|+|. +++++.+.+++.+.+.......|++..|.+++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~i 76 (383)
T TIGR03540 3 ADRIENLPPYLFAEIDKKKAEK--KAEGVDVISLGIGDPD----LPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAV 76 (383)
T ss_pred chhhccCChhHHHHHHHHHHHH--HhcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Confidence 4566666655554444433221 1246789999999966 567789999999877654456899989999999999
Q ss_pred HHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++++.+|..++++ +|++|+|+++++..++++++++||+|++++|+|..+...++..|.+++.+++++++++.+|+++
T Consensus 77 a~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~ 156 (383)
T TIGR03540 77 ADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDA 156 (383)
T ss_pred HHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHH
Confidence 999998777777776 6899999999999999999999999999999999999999999999999998766677789999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~s 254 (422)
+++.+.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+.+....++..+.. .+++++++|||
T Consensus 157 l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfS 236 (383)
T TIGR03540 157 IPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLS 236 (383)
T ss_pred HHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecc
Confidence 99888888999999999999999999999999999999999999999999988886654445544443 35679999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|+++|+|+||++++ +++++++...... ..+++.+.|.++..+|+.. +.++++.++.++++++.+.+.|
T Consensus 237 K~~g~~GlRiG~~i~~--------~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L 307 (383)
T TIGR03540 237 KTYNMTGWRIGMAVGN--------ADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEAL 307 (383)
T ss_pred cccCCccceeeEEeCC--------HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 4677777766533 3456778899998888753 6788888999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l 411 (422)
++. ++. +..|.+|+|+|+.++.. .++.++...+++++||.+.||..|+. .+++||+++.+++++++++++|
T Consensus 308 ~~~-~~~-~~~~~~~~~~~~~l~~~-----~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l 380 (383)
T TIGR03540 308 KKI-GID-VEKPKATFYVWVPVPEG-----YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARI 380 (383)
T ss_pred HhC-CCE-ecCCCcceEEEEECCCC-----CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHH
Confidence 998 776 44778899999998742 25677888877788999999998875 4799999998889999999988
Q ss_pred HH
Q 014603 412 KA 413 (422)
Q Consensus 412 ~~ 413 (422)
++
T Consensus 381 ~~ 382 (383)
T TIGR03540 381 KK 382 (383)
T ss_pred hh
Confidence 64
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=383.61 Aligned_cols=388 Identities=22% Similarity=0.372 Sum_probs=322.5
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPAR 93 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr 93 (422)
++++.|+.....+....+...+.+. . .++.++++|+.|.|. +++++.+.+++.+.+... ...|++..|.+++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr 76 (402)
T PRK06107 4 FVPAARVSRIKPSPSTAAAARAREL-R-AAGRSIVDLTVGEPD----FDTPDHIKQAAVAAIERG-ETKYTLVNGTPALR 76 (402)
T ss_pred hhhhHHhhhcCccHHHHHHHHHHHH-H-hccCCEEEcCCCCCC----CCCCHHHHHHHHHHHHcC-CCCCCCCCCCHHHH
Confidence 4677888877766554444433333 2 347789999999966 466788999999888653 35799999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 94 RAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 94 ~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++++++.+.+|..+.+++|++|+|+++|+..++.+++++||+|++++|+|..|.......+..++.++.+.++++.+|+
T Consensus 77 ~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~ 156 (402)
T PRK06107 77 KAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTP 156 (402)
T ss_pred HHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCH
Confidence 99999999888888889999999999999999999999999999999999999988888888888888775455678899
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc-CcEEEEcccccccccCCCCCCCccccCC--CCCeEEE
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL-GIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTL 250 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i 250 (422)
+.+++.+.++++++++++|+||||.+++.+++++|+++|+++ ++++|+||+|..+.|++....++..+.. .++++++
T Consensus 157 ~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~ 236 (402)
T PRK06107 157 EALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVT 236 (402)
T ss_pred HHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEE
Confidence 999998888899999999999999999999999999999998 9999999999988886654444444432 3579999
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
+||||.|++||+|+||++++ +++++.+...... ..+++.+.|.++..+|+.. +.++++.++.++++++.+
T Consensus 237 ~S~SK~~~~pGlRiG~~~~~--------~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 307 (402)
T PRK06107 237 NGVSKTYAMTGWRIGYAAGP--------ADLIAAINKLQSQSSSCPSSISQAAAAAALNGD-QSFVTESVAVYKQRRDYA 307 (402)
T ss_pred eccchhhcCcccceeeeecC--------HHHHHHHHHHHHhcccCCChHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHH
Confidence 99999998999999999986 4688888777643 4578899999999999743 578889999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCccc----ccC--CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSL----LEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSA 403 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~ 403 (422)
.+.|++++++. +..|++|+|+|++++... ..+ ..++.+++..+++++||.+.||..|+..+++||+++.+.++
T Consensus 308 ~~~L~~~~g~~-~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~ 386 (402)
T PRK06107 308 LALLNAIPGLS-CLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLET 386 (402)
T ss_pred HHHHhcCCCCc-ccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHH
Confidence 99999987777 557899999999874210 001 12456777788888999999999998889999999988999
Q ss_pred HHHHHHHHHHHHHHh
Q 014603 404 LEDGLGRMKAFYDRH 418 (422)
Q Consensus 404 l~~~~~~l~~~~~~~ 418 (422)
+++++++|.++++++
T Consensus 387 l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 387 LEEACARIERAVAAL 401 (402)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998765
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=382.53 Aligned_cols=372 Identities=23% Similarity=0.442 Sum_probs=310.6
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++++.......++.+..... ..+++|+|+.|.|. +++++.+.+++.+.... ....|++..|.+++|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~i 75 (384)
T PRK06348 7 AKKYQQMEVNIMAEIATLAK------KFPDIIDLSLGDPD----LITDESIINAAFEDAKK-GHTRYTDSGGDVELIEEI 75 (384)
T ss_pred HHHHhcCCccHHHHHHHHHH------hcCCcEEcCCCCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHH
Confidence 56777777777777775432 23568999999966 56667777766655443 346899999999999999
Q ss_pred HHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHH
Q 014603 97 ADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 176 (422)
++++.+.+++++++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|..++.++..+++++.+|++.+
T Consensus 76 a~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 155 (384)
T PRK06348 76 IKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKL 155 (384)
T ss_pred HHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999998888876556788999999
Q ss_pred HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCcc
Q 014603 177 EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSISK 255 (422)
Q Consensus 177 ~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~sK 255 (422)
++.++++++++++++|+||||.++|.+++++|+++|+++|++||+||+|..+.+++. ..++..+. ..+++++++||||
T Consensus 156 ~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK 234 (384)
T PRK06348 156 EALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTITFGSFSK 234 (384)
T ss_pred HHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcCcEEEEecchh
Confidence 998888889999999999999999999999999999999999999999999887643 23434443 2467999999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.|++||+|+||++++ +++++.+...... ..+++.+.|.++..++.. .+.++++.++.++++++.+.+.|+
T Consensus 235 ~~~l~GlRiG~~v~~--------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~ 305 (384)
T PRK06348 235 DFAMTGWRIGYVIAP--------DYIIETAKIINEGICFSAPTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIE 305 (384)
T ss_pred ccCCccccceeeecC--------HHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998999999999986 4677777766543 346788999999988874 357788888999999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
+++++. +..|++|+|+|++++... .++.+++..+++++||.+.||..|+. ++++||+++.+++++++++++|+
T Consensus 306 ~~~~~~-~~~p~gg~~~~~~~~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~ 380 (384)
T PRK06348 306 SIPNLS-LHPPKGSIYAFINIKKTG----LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIE 380 (384)
T ss_pred cCCCce-eccCCeeEEEEEecccCC----CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 887766 457888999999986321 15677777777778999999999875 57999999988899999999987
Q ss_pred HH
Q 014603 413 AF 414 (422)
Q Consensus 413 ~~ 414 (422)
+.
T Consensus 381 ~~ 382 (384)
T PRK06348 381 KM 382 (384)
T ss_pred hh
Confidence 64
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=382.30 Aligned_cols=378 Identities=21% Similarity=0.338 Sum_probs=310.3
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
+.+.++.+...+.++.+...+... ...++++|+|+.|.|+ ++.++.+.+++.+.+.......|++..|.++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~ 77 (389)
T PRK08068 4 EPSELLKQLPKQFFASLVAKVNKK--VAEGHDVINLGQGNPD----QPTPEHIVEALQEAAENPANHKYSPFRGYPFLKE 77 (389)
T ss_pred chhhHhhhcCccHHHHHHHHHHHH--HhcCCCeEEecCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 345567666666666665533322 1245778999999866 4667889999988877655668988899999999
Q ss_pred HHHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 95 AIADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
++++++.+.+|.+++++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..|++++.++.++++++.+|+
T Consensus 78 aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~ 157 (389)
T PRK08068 78 AAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDY 157 (389)
T ss_pred HHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCH
Confidence 99999988788788888 89999999999999999999999999999999999999999999999999987666788899
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccc-cCCCCCeEEEec
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV-FGSIVPVLTLGS 252 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~s 252 (422)
+++++.+.++++++++++|+||||.++|.+++++|+++|+++|++||+||+|..+.+++....++.. .+..+++++++|
T Consensus 158 ~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S 237 (389)
T PRK08068 158 TKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYT 237 (389)
T ss_pred HHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEec
Confidence 9999888778999999999999999999999999999999999999999999988776533333222 233457899999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
|||.|+++|+|+||++++ +++++.+....... .+.++..|.++..++... ..++++.++.++++++.+.+
T Consensus 238 ~SK~~g~~GlRiG~~~~~--------~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~r~~~~~ 308 (389)
T PRK08068 238 LSKTFNMAGWRVAFAVGN--------ESVIEAINLLQDHLFVSLFGAIQDAAIEALLSD-QSCVAELVARYESRRNAFIS 308 (389)
T ss_pred chhccCCccceeEeEecC--------HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 56888887766432 344456777777777542 47788899999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~ 409 (422)
.|+++ ++. +..|.+|+|+|+.++.. .++.++.+.+++++||.|.||..|+. .+++||+++.+++++.++++
T Consensus 309 ~L~~~-g~~-~~~~~g~~~~~v~~~~~-----~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~ 381 (389)
T PRK08068 309 ACREI-GWE-VDAPKGSFFAWMPVPKG-----YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVE 381 (389)
T ss_pred HHHHC-CCc-ccCCCeeEEEEEECCCC-----CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHH
Confidence 99998 676 54778889999998742 25677878877678999999988875 57999999988889999999
Q ss_pred HHHHH
Q 014603 410 RMKAF 414 (422)
Q Consensus 410 ~l~~~ 414 (422)
+|.++
T Consensus 382 ~l~~~ 386 (389)
T PRK08068 382 RIGKL 386 (389)
T ss_pred HHHHh
Confidence 98763
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=380.71 Aligned_cols=376 Identities=24% Similarity=0.402 Sum_probs=310.2
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.|+....++....+.. ..+... ..+.++++|+.|+|. +++++.+.+++.+.+.......|++..|.+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~a 77 (385)
T PRK09276 4 LADRIKNLPPYLFAEIDK-KKAEKI-ARGVDVISLGIGDPD----LPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKA 77 (385)
T ss_pred hhhHhhhCCccHHHHHHH-HHHHHH-hcCCCEEEecCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Confidence 355666666554555443 222221 246789999999866 56778999999988765445689988899999999
Q ss_pred HHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 96 IADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
+++++++.+|..++++ +|++|+|+++++..++++++++||+|++++|+|+.+...++..|.+++.+++.+++++.+|++
T Consensus 78 ia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~ 157 (385)
T PRK09276 78 VADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLD 157 (385)
T ss_pred HHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHH
Confidence 9999998878778887 588999999999999999999999999999999999999999999999999876667788999
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecC
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSI 253 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~ 253 (422)
.+++.+.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..++. .+++++++||
T Consensus 158 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 237 (385)
T PRK09276 158 AIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSL 237 (385)
T ss_pred HHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecc
Confidence 998888888999999999999999999999999999999999999999999998876654445544443 3568999999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
||.|+++|+|+||++++ +++++.+...... ..+.+.+.|.++..+|+. .+.++++.++.++++++.+.+.
T Consensus 238 SK~~g~~GlRiG~~i~~--------~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~ 308 (385)
T PRK09276 238 SKTYNMTGWRIGFAVGN--------ADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEG 308 (385)
T ss_pred hhhcCCcchhheeeeCC--------HHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986 4678888766532 335566788888888864 3578888899999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~ 410 (422)
|+++ ++. +..|.+|+|+|++++.. .++.++..++++++||.+.||..|+. ++++||+++.+++++.+++++
T Consensus 309 L~~~-~~~-~~~~~~~~~~~v~~~~~-----~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~ 381 (385)
T PRK09276 309 LRKL-GLE-VEPPKATFYVWAPVPKG-----YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVER 381 (385)
T ss_pred HHhC-CCc-ccCCCcceEEEEECCCC-----CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHH
Confidence 9998 676 44788889999998743 25677888887778999999988865 479999999888999999998
Q ss_pred HHH
Q 014603 411 MKA 413 (422)
Q Consensus 411 l~~ 413 (422)
|.+
T Consensus 382 l~~ 384 (385)
T PRK09276 382 IKK 384 (385)
T ss_pred Hhh
Confidence 864
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=382.60 Aligned_cols=372 Identities=23% Similarity=0.359 Sum_probs=308.9
Q ss_pred HHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 18 EELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
.++...+.+.++.+...+... .+..|.++|+|+.|+|. +++++.+.+++.+.+. ....|++..|.+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia 75 (396)
T PRK09147 3 PRLDRLQPYPFEKLRALFAGV-TPPADLPPISLSIGEPK----HPTPAFIKDALAANLD--GLASYPTTAGLPALREAIA 75 (396)
T ss_pred chhhcCCcchHHHHHHHHHhh-hhccCCCeEecCCCCCC----CCCCHHHHHHHHHHhh--hhcCCCCCCCCHHHHHHHH
Confidence 356677777777777655432 23458899999999966 5678899999988764 3568999899999999999
Q ss_pred HHHhhcCCCC-CCCC-CEEEecCHHHHHHHHHHHhcCC---CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 98 DYLNRDLPYK-LSPD-DVYLTLGCTQAIEVILTVLARP---GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 98 ~~l~~~~~~~-~~~~-~i~~~~g~~~a~~~~~~~l~~~---gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
+++++.+|+. ++++ +|++|+|+++++..++++++++ ||.|+++.|+|..+...++..|.+++.+|++++++|.+|
T Consensus 76 ~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d 155 (396)
T PRK09147 76 AWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPD 155 (396)
T ss_pred HHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccC
Confidence 9999888877 8885 8999999999999999999999 899999999999999999999999999998766678899
Q ss_pred HHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCC-cc---ccC--CCC
Q 014603 173 LDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVP-MG---VFG--SIV 245 (422)
Q Consensus 173 ~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~-~~---~~~--~~~ 245 (422)
++.+++.+.++++++++++|+||||.++|.+++++|+++|++|+++||+||+|..+.|++. ...+ +. ..+ ..+
T Consensus 156 ~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (396)
T PRK09147 156 FDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFK 235 (396)
T ss_pred HHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccc
Confidence 9999887777899999999999999999999999999999999999999999999887653 1111 11 122 236
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRE 324 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 324 (422)
++++++||||.|+++|+|+||++++ +++++++...... ..+++.+.|.++.+++.. +.++.+.++.+++
T Consensus 236 ~vi~~~S~SK~~~~~GlRiG~~~~~--------~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~--~~~~~~~~~~~~~ 305 (396)
T PRK09147 236 RLVVFHSLSKRSNVPGLRSGFVAGD--------AALLKKFLLYRTYHGCAMPPAVQAASIAAWND--EAHVRENRALYRE 305 (396)
T ss_pred cEEEEeccccccCCccceeeeecCC--------HHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc--hhHHHHHHHHHHH
Confidence 8999999999989999999999986 4677777765543 346677888887777753 5678889999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--------CCeEEEE
Q 014603 325 TADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRIT 396 (422)
Q Consensus 325 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------~~~iRis 396 (422)
+++.+.+.|++. +. +..|++|+|+|++++. ++.++...+++++||.+.||..|+. .+++||+
T Consensus 306 ~~~~~~~~L~~~--~~-~~~p~~g~f~~~~~~~-------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~ 375 (396)
T PRK09147 306 KFDAVTPILAPV--LD-VQLPDAGFYLWAKVPG-------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIA 375 (396)
T ss_pred HHHHHHHHHHHh--cC-CCCCCeeEEEEEECCC-------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEE
Confidence 999999999875 44 3478999999999972 4677778887788999999988752 4789999
Q ss_pred eccChHHHHHHHHHHHHHHH
Q 014603 397 FAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 397 ~~~~~~~l~~~~~~l~~~~~ 416 (422)
++.+++++++++++|.+++.
T Consensus 376 ~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 376 LVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred ecCCHHHHHHHHHHHHHHhc
Confidence 99888999999999998763
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-50 Score=380.10 Aligned_cols=383 Identities=21% Similarity=0.334 Sum_probs=310.5
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++++++.+...+..+...+.+. .. .+..+++|+.|.|. .+.++.+.+++.+.+.......|++..|.+++|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~i 80 (403)
T PRK08636 7 FNKIKRLPKYVFAEVNELKMAA-RR-AGEDIIDFSMGNPD----GPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAI 80 (403)
T ss_pred HHHHHhCCccHHHHHHHHHHHH-Hh-cCCCEEEcCCcCCC----CCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHH
Confidence 3467777777676666543322 22 46789999999876 345666777777766544457899999999999999
Q ss_pred HHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++.+.+|+.++++ +|++|+|+++++..++++++++||+|++++|+|+.+...++..|.+++.++++.++++++|++.
T Consensus 81 a~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 160 (403)
T PRK08636 81 CNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQ 160 (403)
T ss_pred HHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhh
Confidence 999998888888887 7999999999999999999999999999999999999999999999999988545567888775
Q ss_pred H----HHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCe
Q 014603 176 V----EALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPV 247 (422)
Q Consensus 176 l----~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~ 247 (422)
+ ++.++ ++++++++++|+||||.++|.+++++|+++|++|+++||+||+|..+.+++....++..++. .+++
T Consensus 161 l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 240 (403)
T PRK08636 161 FFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVA 240 (403)
T ss_pred hhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccE
Confidence 4 55443 46788999999999999999999999999999999999999999998887654445555543 2457
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 326 (422)
++++||||.|++||+|+||++++ +++++.+...... ..+++.+.|.++..+++. .+.++++.++.+++++
T Consensus 241 i~~~S~SK~~~~~GlRiG~iv~~--------~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (403)
T PRK08636 241 VESYTLSKSYNMAGWRVGFVVGN--------KKLVGALKKIKSWLDYGMFTPIQVAATIALDG-DQSCVEEIRETYRKRR 311 (403)
T ss_pred EEEEecccccCCccceeeeeeCC--------HHHHHHHHHHHHHhcccCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHH
Confidence 88999999999999999999986 4677877766543 235566778877777753 3578888999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHH
Q 014603 327 DICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSAL 404 (422)
Q Consensus 327 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l 404 (422)
+.+.+.|++. ++. +..|.+|+|+|++++.... . .++.+++..+++++||.+.||..|+. .+++||+++.+++++
T Consensus 312 ~~l~~~L~~~-~~~-~~~p~~g~~~~~~l~~~~~-~-~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l 387 (403)
T PRK08636 312 DVLIESFANA-GWE-LQKPRASMFVWAKIPEPAR-H-LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRI 387 (403)
T ss_pred HHHHHHHHHC-CCc-ccCCCcceEEEEECCCccC-C-CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHH
Confidence 9999999987 666 4578899999999974210 0 13567777777788999999998875 579999999889999
Q ss_pred HHHHHHHHHHHHHh
Q 014603 405 EDGLGRMKAFYDRH 418 (422)
Q Consensus 405 ~~~~~~l~~~~~~~ 418 (422)
++++++|+++++.+
T Consensus 388 ~~~~~rl~~~l~~~ 401 (403)
T PRK08636 388 RQAARNIKKFLKEL 401 (403)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999774
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-50 Score=379.60 Aligned_cols=381 Identities=22% Similarity=0.427 Sum_probs=314.5
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.|+.....+.++.+.....+. . ..++++++|+.|.|. +++++.+.+++.+.+... ...|++..|.+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ 75 (388)
T PRK07337 3 LAARVDAIEPFYVMELAKEAQAL-E-RAGRDIIHMGIGEPD----FTAPEPVVEAAARALRRG-VTQYTSALGLAPLREA 75 (388)
T ss_pred hhhHhHhcCchHHHHHHHHHHHH-H-hcCCCEEEeCCcCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHH
Confidence 46677777777777766544432 2 256789999999966 566788999998887643 4579888899999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++++.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++.+.++++.+|++.
T Consensus 76 ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (388)
T PRK07337 76 IAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAAD 155 (388)
T ss_pred HHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHH
Confidence 99999988888889999999999999999999999999999999999999999888889999999998765678899999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
+++.++++++++++++|+||||.+++.+++++|+++|+++++++|+||+|..+.+.+.. .+...+ .+++++++|+||
T Consensus 156 l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~-~~~~~~--~~~vi~~~S~SK 232 (388)
T PRK07337 156 VEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAP-VSALSL--GDDVITINSFSK 232 (388)
T ss_pred HHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCC-cChhhc--cCCEEEEEechh
Confidence 99999888999999999999999999999999999999999999999999988776542 222222 356899999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.|+++|+|+||++++ +++++++..... ...+.+.+.|.++..++.......+.+.++.++++++.+.+.|+
T Consensus 233 ~~~~~G~RiG~~~~~--------~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~ 304 (388)
T PRK07337 233 YFNMTGWRLGWLVVP--------EALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALE 304 (388)
T ss_pred hcCCchhheeeeecC--------HHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 467777776653 33467888999988888753334567788899999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEeccChHHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~l~~~~~~l 411 (422)
++ ++.+...|++|+|+|++++....++..++.++...+++++||.+.||..|+. .+++||+++.+++++++++++|
T Consensus 305 ~~-~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl 383 (388)
T PRK07337 305 SL-GFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARL 383 (388)
T ss_pred hc-CCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 87 5553346889999999987421112225677777878888999999999875 5799999998899999999999
Q ss_pred HHHH
Q 014603 412 KAFY 415 (422)
Q Consensus 412 ~~~~ 415 (422)
.+++
T Consensus 384 ~~~l 387 (388)
T PRK07337 384 GKLF 387 (388)
T ss_pred HHHh
Confidence 8865
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=389.49 Aligned_cols=401 Identities=23% Similarity=0.368 Sum_probs=313.4
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhh---c----cCCCCceeecCCCCCCCCC------------CCC------------
Q 014603 15 KANEELKTASGITVRGVLNSLLENLN---K----NDTRPLIPLGHGDPSAFPS------------FRT------------ 63 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~i~l~~g~~~~~~~------------~~~------------ 63 (422)
.++.|+..+..+....+....++... . .++.++|+|++|+|..... +..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~ 88 (481)
T PTZ00377 9 DINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSL 88 (481)
T ss_pred ccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCcccccc
Confidence 45778888887776666544444321 1 1568999999999851000 222
Q ss_pred -cHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCCCEEEe
Q 014603 64 -ASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPGANILL 139 (422)
Q Consensus 64 -~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~Vl~ 139 (422)
|..+.+++.+.+... ....|++..|.+++|++|++++.+.+|+.+++++|++|+|+++++..++++++ ++||.|++
T Consensus 89 ~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv 168 (481)
T PTZ00377 89 FPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168 (481)
T ss_pred CCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEE
Confidence 457777777665542 34579999999999999999999888888999999999999999999999998 79999999
Q ss_pred cCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcccccCHHHHHHHHHHHH
Q 014603 140 PRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNVYTYQHLQKIAETAK 213 (422)
Q Consensus 140 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~ 213 (422)
+.|+|+.|...++..|..++.++++++++|.+|++.|++.+++ +++++++++|+||||.+++.+++++|+++|+
T Consensus 169 ~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~ 248 (481)
T PTZ00377 169 PIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCY 248 (481)
T ss_pred CCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999987777889999999998764 6888999999999999999999999999999
Q ss_pred HcCcEEEEcccccccccCC-CCCCCcc----ccCCC----CCeEEEecCccc-cCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 214 KLGIMVIADEVYDHLAFGN-TPFVPMG----VFGSI----VPVLTLGSISKR-WIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 214 ~~~~~li~D~~~~~~~~~~-~~~~~~~----~~~~~----~~~i~i~s~sK~-~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++|++||+||+|..+.|++ ..+.++. .+..+ .++++++||||. ++++|+|+||+++.+. .+++++
T Consensus 249 ~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~-----p~~li~ 323 (481)
T PTZ00377 249 EKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNI-----PPEVRE 323 (481)
T ss_pred HCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCC-----CHHHHH
Confidence 9999999999999988853 2333322 22221 268999999997 5889999999987310 156888
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhc------hHHH---HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEe
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKT------EEEF---FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVK 354 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~ 354 (422)
++........+++.+.|.++..+++.. .+.+ +.+..+.++++++.+.+.|++++++. +..|++|+|+|+.
T Consensus 324 ~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~-~~~p~gg~fl~~~ 402 (481)
T PTZ00377 324 QIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS-CQPVEGAMYAFPR 402 (481)
T ss_pred HHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-eecCCeeEEEEee
Confidence 887766444467889999999998631 0123 33444567899999999999988888 5588999999977
Q ss_pred cCcc--cc-----cCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEeccChHHHHHHHHHHHHHHHHhccc
Q 014603 355 LNYS--LL-----EGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 355 ~~~~--~~-----~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
++.. .. .+..++.+++..+++++||.+.||..|+. .+++|+|++.+++++++++++|.++++++.+|
T Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 403 IELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMKK 479 (481)
T ss_pred ccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6421 00 00112445667788889999999999974 46999999988889999999999999887654
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=377.23 Aligned_cols=388 Identities=27% Similarity=0.461 Sum_probs=325.9
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPAR 93 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr 93 (422)
++++.|+.+.+++.++.++....+.. ..+..+++|+.|+|. +++++.+.+++.+.+.+. ...|++..|.+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr 74 (393)
T PRK05764 2 MKLSKRVSRVTPSATLAVTAKAKELK--AQGRDVISLGAGEPD----FDTPEHIKEAAIEALDDG-KTKYTPAAGIPELR 74 (393)
T ss_pred cchhhhhhhcCchHHHHHHHHHHHHH--hccCCEEEeCCCCCC----CCCCHHHHHHHHHHHhcC-CCCcCCCCChHHHH
Confidence 35788999999999999887665432 246789999999976 567789999998887654 34698888999999
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 94 RAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 94 ~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++++++.+.+|.++++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|.+++.++.++++++.+|+
T Consensus 75 ~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 154 (393)
T PRK05764 75 EAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTV 154 (393)
T ss_pred HHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCH
Confidence 99999998887877889999999999999999999999999999999999999999999999999999987666788999
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc--CCCCCeEEEe
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF--GSIVPVLTLG 251 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~--~~~~~~i~i~ 251 (422)
+.+++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+|++|..+.+++....++..+ +..+++++++
T Consensus 155 ~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (393)
T PRK05764 155 EQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVN 234 (393)
T ss_pred HHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEe
Confidence 99999888889999999999999999999999999999999999999999999888765433344333 2235789999
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICC 330 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 330 (422)
||||.++++|+|+||++++ +++++++..... ....++.+.|.++..+|+. .+.++++.++.++++++.+.
T Consensus 235 s~SK~~~~~G~RiG~i~~~--------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~ 305 (393)
T PRK05764 235 GFSKAYAMTGWRLGYAAGP--------KELIKAMSKLQSHSTSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMV 305 (393)
T ss_pred cCcccccCccceeEEEecC--------HHHHHHHHHHHhhcccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 567888776654 3447788999999998873 35778888899999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~ 410 (422)
+.|++++++. +..|.+++|+|+.++........++.++...+++++||.+.||..|+.++++||+++.+++++++++++
T Consensus 306 ~~L~~~~g~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~ 384 (393)
T PRK05764 306 DGLNEIPGLE-CPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLER 384 (393)
T ss_pred HHHhhCCCCc-ccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHH
Confidence 9999988887 447888899999887532111113467777777888999999998887899999999889999999999
Q ss_pred HHHHHHHh
Q 014603 411 MKAFYDRH 418 (422)
Q Consensus 411 l~~~~~~~ 418 (422)
|.+++++.
T Consensus 385 l~~~~~~~ 392 (393)
T PRK05764 385 IERFLESL 392 (393)
T ss_pred HHHHHHhh
Confidence 99998754
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=376.85 Aligned_cols=394 Identities=25% Similarity=0.447 Sum_probs=309.4
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
+.++.+...+.+..+....++. +..+.++|+|+.|+|..+ .+++++.+.+++.+.+.. ...|++..|.+++|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~p~~~-~~~~~~~i~~~~~~~~~~--~~~Y~~~~G~~~lr~~i 81 (404)
T PRK09265 7 SSKLENVCYDIRGPVLKEAKRL--EEEGHKILKLNIGNPAPF-GFEAPDEILRDVIRNLPT--AQGYSDSKGLFSARKAI 81 (404)
T ss_pred hHHHHhcCcchhHHHHHHHHHH--HHcCCCeEEecCCCCCcC-CCCCCHHHHHHHHHHhhc--CCCCCCCCCcHHHHHHH
Confidence 4567777777666666554433 346789999999998742 356788888888876643 45899999999999999
Q ss_pred HHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHH
Q 014603 97 ADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 176 (422)
++++.+....++++++|++|+|+++++..++++++++||+|++++|+|..+...++..|..++.++.+.++++.+|++.+
T Consensus 82 a~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l 161 (404)
T PRK09265 82 MQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDI 161 (404)
T ss_pred HHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHH
Confidence 99997654447889999999999999999999999999999999999999999999889888888776555677899999
Q ss_pred HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 177 EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 177 ~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
++.++++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+..+.++++++||||.
T Consensus 162 ~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 241 (404)
T PRK09265 162 RSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKA 241 (404)
T ss_pred HHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhh
Confidence 99888889999999999999999999999999999999999999999999988866544455555444468999999999
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhc
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
|++||+|+||++++.+.... +.+++.+........+++.++|.++..+|..... ..+.+..+++.++++.+.+.|++
T Consensus 242 ~~~pGlRiG~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~ 319 (404)
T PRK09265 242 YRVAGFRVGWMVLSGPKKHA--KGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA 319 (404)
T ss_pred ccCcccceEEEEEeCchHHH--HHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999975321110 1234444332223346778899999999864221 11222234677788999999998
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
++++. +..|.+|+|+|++++.... +..++.+.+.++++++||.+.||..|+. .+++|++++.+++++++++++|++
T Consensus 320 ~~~~~-~~~p~~g~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~ 397 (404)
T PRK09265 320 IPGVS-CVKPKGALYAFPKLDPKVY-PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGR 397 (404)
T ss_pred CCCCc-ccCCCcceEEEEEeccccc-CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 87877 5578999999999874211 1113455666777888999999998853 679999999889999999999999
Q ss_pred HHHHhc
Q 014603 414 FYDRHA 419 (422)
Q Consensus 414 ~~~~~~ 419 (422)
+++++.
T Consensus 398 ~l~~~~ 403 (404)
T PRK09265 398 FLSGYR 403 (404)
T ss_pred HHHHhc
Confidence 998754
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=376.93 Aligned_cols=378 Identities=20% Similarity=0.358 Sum_probs=307.8
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.+++.........+.. ..+.. +..|.++++|+.|+|. .++++.+.+++.+.+.......|++..|.+++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~g~~~i~l~~g~p~----~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~a 81 (394)
T PRK05942 8 PADRLQALPPYVFARLDE-LKARA-REQGLDLIDLGMGNPD----GAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQA 81 (394)
T ss_pred hhhhhccCCCcHHHHHHH-HHHHH-HhcCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHH
Confidence 355666666553433332 22222 2246779999999866 35567778877776655445689998999999999
Q ss_pred HHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 96 IADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
+++++++.++..++++ .|++|+|+++++..++.+++++||+|++++|+|+.+...+...|.+++.++++.+++|.+|++
T Consensus 82 ia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 161 (394)
T PRK05942 82 ITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLS 161 (394)
T ss_pred HHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHH
Confidence 9999998778778888 488999999999999999999999999999999999888888999999999876667889999
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecC
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSI 253 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~ 253 (422)
++++.+.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+.. .+.+++++||
T Consensus 162 ~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~Sf 241 (394)
T PRK05942 162 SIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTL 241 (394)
T ss_pred HHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecc
Confidence 999988889999999999999999999999999999999999999999999988876654444444432 3457889999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
||.|+++|+|+||++++ +++++.+...... ..+.+.++|.++..+|+. .+.++++.+++++++++.+.+.
T Consensus 242 SK~~~~~GlRiG~i~~~--------~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 312 (394)
T PRK05942 242 SKTYNMAGWRVGFVVGN--------RHIIQGLRTLKTNLDYGIFSALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQG 312 (394)
T ss_pred hhccCChhhheeeeecC--------HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 5688888776542 345677889999999874 3578888999999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~ 410 (422)
|++. ++. +..|.+|+|+|++++.. .++.++...+++++||.+.||..|+. .+++||+++.+.+.+.+++++
T Consensus 313 L~~~-~~~-~~~~~~~~f~~~~~~~~-----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~ 385 (394)
T PRK05942 313 LGEL-GWN-IPPTKATMYLWVPCPVG-----MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDR 385 (394)
T ss_pred HHHC-CCe-ecCCCeeeEEEEECCCC-----CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHH
Confidence 9887 676 44788889999998742 24667777777888999999998864 579999999778899999999
Q ss_pred HHHHH
Q 014603 411 MKAFY 415 (422)
Q Consensus 411 l~~~~ 415 (422)
|.++-
T Consensus 386 l~~~~ 390 (394)
T PRK05942 386 LKQAG 390 (394)
T ss_pred HHHhh
Confidence 98764
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=376.11 Aligned_cols=382 Identities=22% Similarity=0.359 Sum_probs=306.9
Q ss_pred HHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 18 EELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
+|+...+.+.+..+.. .....+ ..++++|+|+.|.|+ +++++.+.+++.+.+.......|++..|.+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia 78 (405)
T PRK09148 5 HRIRRLPPYVFEQVNR-LKAAAR-AAGADIIDLGMGNPD----LPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQA 78 (405)
T ss_pred hhhhcCCccHHHHHHH-HHHHHH-hcCCCeEEcCCCCCC----CCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHH
Confidence 3555555554555443 222222 247789999999866 4667888899888775544568999899999999999
Q ss_pred HHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHH
Q 014603 98 DYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 98 ~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 176 (422)
+++++.+|..++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...+...|.+++.++.+.++.+..+++++
T Consensus 79 ~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~ 158 (405)
T PRK09148 79 AYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERA 158 (405)
T ss_pred HHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHH
Confidence 99988778788887 89999999999999999999999999999999999998999999999999986554443444444
Q ss_pred HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCcc
Q 014603 177 EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISK 255 (422)
Q Consensus 177 ~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK 255 (422)
.+...++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+.. .+++++++||||
T Consensus 159 ~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK 238 (405)
T PRK09148 159 VRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSK 238 (405)
T ss_pred HhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccc
Confidence 4333457899999999999999999999999999999999999999999998876544444444432 345788999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.|++||+|+||++++ +++++++...... ..+++.+.|.++..+|+. .+.++++.++.++++++.+.+.|+
T Consensus 239 ~~~~pGlR~G~~v~~--------~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~ 309 (405)
T PRK09148 239 TFSMAGWRMGFAVGN--------ERLIAALTRVKSYLDYGAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFG 309 (405)
T ss_pred ccCCcchheeeeeCC--------HHHHHHHHHHHHHhccCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999985 5688888776643 346678899999999974 357888899999999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
++ ++. +..|++|+|+|++++.... . .++.++...+++++||.|.||..|+. ++++||+++.+++++.+++++|.
T Consensus 310 ~~-~~~-~~~p~~g~f~~~~l~~~~~-~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~ 385 (405)
T PRK09148 310 RA-GWD-IPPPAASMFAWAPIPEAFR-H-LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIK 385 (405)
T ss_pred Hc-CCc-cCCCCeeEEEEEECCCccC-C-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 87 666 4478899999999874210 0 13567777777778999999998865 57999999988899999999999
Q ss_pred HHHHHh
Q 014603 413 AFYDRH 418 (422)
Q Consensus 413 ~~~~~~ 418 (422)
+++.++
T Consensus 386 ~~l~~~ 391 (405)
T PRK09148 386 RFLSSA 391 (405)
T ss_pred HHHHHH
Confidence 998764
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=377.31 Aligned_cols=380 Identities=24% Similarity=0.424 Sum_probs=317.9
Q ss_pred CccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHH
Q 014603 13 GFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA 92 (422)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l 92 (422)
++.+++|+.+.....++.++.... ..+++|+|+.|+|. +++++.+.+++.+.+... ...|.+..|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~l 75 (391)
T PRK08361 7 KYFIAGRINLIQRSKIRELFERAS------KMENVISLGIGEPD----FDTPKNIKEAAKRALDEG-WTHYTPNAGIPEL 75 (391)
T ss_pred ccchhHHHHhCCccHHHHHHHHHH------hhcCeEEcCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHH
Confidence 355678888877777777765331 23578999999966 466788999998877653 4578888899999
Q ss_pred HHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 93 r~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
|+++++++.+.+|.++++++|++|+|+++++..++.+++++||+|++++|+|.++...+...|.+++.+++++++++.+|
T Consensus 76 r~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 155 (391)
T PRK08361 76 REAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPD 155 (391)
T ss_pred HHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCC
Confidence 99999999887787889999999999999999999999999999999999999999999999999999998776677899
Q ss_pred HHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEec
Q 014603 173 LDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGS 252 (422)
Q Consensus 173 ~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s 252 (422)
++.+++.++++++++++++|+||||.+++.+++++|+++|+++++++|+||+|..+.+++....++..+.. +++++++|
T Consensus 156 ~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~i~~~s 234 (391)
T PRK08361 156 PDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-DNTILANS 234 (391)
T ss_pred HHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCC-CCEEEEec
Confidence 99999999888999999999999999999999999999999999999999999988775543334333322 46899999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICC 330 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 330 (422)
+||.|+++|+|+||++++ +++++.+..... ...+.+.+.|.++..+|++.. ..++++.++.++++++.+.
T Consensus 235 ~SK~~~~~GlRiG~~~~~--------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T PRK08361 235 FSKTFAMTGWRLGFVIAP--------EQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVL 306 (391)
T ss_pred CchhcCCcHhhhhhhccC--------HHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 467777765543 234667788999999997643 3578889999999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGL 408 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~ 408 (422)
+.|++++++. +..|.+|+|+|++++... .++.++...+++++||.|.||..|+. .+++||+++.+++++++++
T Consensus 307 ~~L~~~~~~~-~~~p~g~~~~~~~l~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al 381 (391)
T PRK08361 307 KRLKEMPHIK-VFEPKGAFYVFANIDETG----MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAM 381 (391)
T ss_pred HHHHhCCCCe-ecCCCEEEEEEEECCCCC----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHH
Confidence 9999987777 557888999999987421 25677877777778999999998865 5799999998888999999
Q ss_pred HHHHHHHHH
Q 014603 409 GRMKAFYDR 417 (422)
Q Consensus 409 ~~l~~~~~~ 417 (422)
++|++++++
T Consensus 382 ~~l~~~l~~ 390 (391)
T PRK08361 382 ERMEKALEE 390 (391)
T ss_pred HHHHHHHhc
Confidence 999998864
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=375.92 Aligned_cols=353 Identities=24% Similarity=0.446 Sum_probs=299.7
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAI 123 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~ 123 (422)
.++|+|+.|.|. +++++.+.+++.+.+.. ....|++..|.+++|+++++++++.+|..++++ +|++|+|+++|+
T Consensus 20 ~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al 94 (378)
T PRK07682 20 EGVISLGVGEPD----FVTPWNVREASIRSLEQ-GYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQAL 94 (378)
T ss_pred CCeEEeCCCCCC----CCCCHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 578999999976 45677788888887764 346798888999999999999998888778876 799999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
.+++++++++||+|++++|+|+.+...++..|.+++.++.+.++++.+|++.+++.+.++++++++++|+||||.++|.+
T Consensus 95 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~ 174 (378)
T PRK07682 95 DVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKS 174 (378)
T ss_pred HHHHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHH
Confidence 99999999999999999999999999999999999888876555678999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
++++|+++|+++++++|+||+|..+.+++. ..++..+. ..+++++++||||.|+++|+|+||++++ ++++
T Consensus 175 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~--------~~~i 245 (378)
T PRK07682 175 ELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP--------VYFS 245 (378)
T ss_pred HHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcC--------HHHH
Confidence 999999999999999999999999888653 22333332 2357999999999999999999999986 4688
Q ss_pred HHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 283 DSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 283 ~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
+++...... ..+++.+.|.++..+|+.. +.++++.++.++++++.+.+.|+++ ++. +..|.+++|+|+.++...
T Consensus 246 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p~g~~~~~~~~~~~~-- 320 (378)
T PRK07682 246 EAMLKIHQYSMMCAPTMAQFAALEALRAG-NDDVIRMRDSYRKRRNFFVTSFNEI-GLT-CHVPGGAFYAFPSISSTG-- 320 (378)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHC-CCc-cCCCCeeEEEEEeccCCC--
Confidence 888766543 3466788999999999753 3568888899999999999999998 776 557888999999875311
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.++.++...+++++||.+.||..|+. ++++|||++.+++++++++++|+++++++
T Consensus 321 --~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 321 --LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred --CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 25677877877778999999998865 58999999988899999999999998764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=372.22 Aligned_cols=381 Identities=22% Similarity=0.351 Sum_probs=313.2
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
++++|+.....+.+..... ..+. ..+.++|+.|.+. +++++.+.+++.+.+.......|++..|.+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~ 72 (389)
T PRK05957 3 QFTSRMDAVQSPIIPVVGQ-LIRE-----NPGTISLGQGVVS----YPPPPEAIEALNNFLANPENHKYQAVQGIPPLLE 72 (389)
T ss_pred hhhHHHHhcCCcHHHHHHH-HHHh-----CCCeEEccCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 3466776666555544443 2221 3568999999966 5778999999998876544467998899999999
Q ss_pred HHHHHHhhcCCCCCC-CCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 95 AIADYLNRDLPYKLS-PDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
++++++.+.+|..++ +++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++.+ +++.+|+
T Consensus 73 ~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~ 150 (389)
T PRK05957 73 AITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQP 150 (389)
T ss_pred HHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCH
Confidence 999999888887766 6789999999999999999999999999999999999888888899999988864 4567999
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEec
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGS 252 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s 252 (422)
+.+++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|..+.+++....+...+ +...+++++.|
T Consensus 151 ~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 230 (389)
T PRK05957 151 EAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYS 230 (389)
T ss_pred HHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEec
Confidence 99999998889999999999999999999999999999999999999999999888765332222222 33457899999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
|||.|+++|+|+||++++ +++++++...... ..+++.+.|.++..+|++. ..++++..+.++++++.+.+
T Consensus 231 ~SK~~g~~GlRiG~~~~~--------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~r~~l~~ 301 (389)
T PRK05957 231 LSKAYGFASWRIGYMVIP--------IHLLEAIKKIQDTILICPPVVSQYAALGALQVG-KSYCQQHLPEIAQVRQILLK 301 (389)
T ss_pred chhhccCccceeEEEecC--------HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 4788888876643 3466778999998888752 36778888889999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALEDGL 408 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~~~~ 408 (422)
.|++++++..+..|.+|+|+|++++.. .++.+++..+++++||.+.||..|+. ++++||+++ .+++++++++
T Consensus 302 ~L~~~~~~~~~~~~~gg~~~~~~~~~~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~ 376 (389)
T PRK05957 302 SLGQLQDRCTLHPANGAFYCFLKVNTD-----LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGI 376 (389)
T ss_pred HHHhcCCCccccCCCeeEEEEEeCCCC-----CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHH
Confidence 999886642255788899999998642 25778888887778999999998865 469999998 6889999999
Q ss_pred HHHHHHHHHhccc
Q 014603 409 GRMKAFYDRHAKK 421 (422)
Q Consensus 409 ~~l~~~~~~~~~~ 421 (422)
++|.+.++++-+|
T Consensus 377 ~~l~~~~~~~~~~ 389 (389)
T PRK05957 377 ERLVQGLKTIVQQ 389 (389)
T ss_pred HHHHHHHHhhhcC
Confidence 9999999886543
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=374.14 Aligned_cols=384 Identities=25% Similarity=0.439 Sum_probs=315.0
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
+++.++.....+.++.++......- ..+.++++|+.|.|. +++++.+.+++.+... ....|++..|.+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~--~~~~Y~~~~g~~~lr~ 73 (397)
T PRK07568 2 KISKRVLNMPASPIRKLVPYADEAK--KRGIKVYHLNIGQPD----IKTPEVFFEAIKNYDE--EVLAYSHSQGIPELRE 73 (397)
T ss_pred chhhHhhhCCcchHHHHHHHHHHHH--hhCCCEEEecCCCCC----CCCCHHHHHHHHHHhc--CCcCcCCCCCCHHHHH
Confidence 4567777777778888876543221 135679999999966 5667899999887653 2457999899999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc-CH
Q 014603 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV-DL 173 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-d~ 173 (422)
++++++. ..+.++++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++.+.++++.. ++
T Consensus 74 ~ia~~~~-~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~ 152 (397)
T PRK07568 74 AFAKYYK-KWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSK 152 (397)
T ss_pred HHHHHHH-HhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCH
Confidence 9999998 467778899999999999999999999999999999999999999888889999999998864445443 57
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEec
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGS 252 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s 252 (422)
+.+++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|..+.+++....++..+.. .++++++.|
T Consensus 153 ~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S 232 (397)
T PRK07568 153 EEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDS 232 (397)
T ss_pred HHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEec
Confidence 8999988888999999999999999999999999999999999999999999998887654444444433 467999999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
+||.|+++|+|+||+++++ +++++.+........+++.+.|.++..+|+.. +.++++.++.++++++.+.+.
T Consensus 233 ~SK~~~~~G~R~G~~~~~~-------~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~ 304 (397)
T PRK07568 233 VSKRYSACGARIGCLISKN-------KELIAAAMKLCQARLSPPTLEQIGAAALLDTP-ESYFDEVREEYKKRRDILYEE 304 (397)
T ss_pred chhhccCCCcceEEEecCC-------HHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999853 35666665544333467788999999999753 578888999999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHh-----cCeEEecCCCCCC-----CCeEEEEeccChH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----KDWLRITFAVEPS 402 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~v~~g~~~~~-----~~~iRis~~~~~~ 402 (422)
|++++++. +..|.+|+|+|++++.. ++.++...++++ +||.+.||..|+. ++++||+++.+++
T Consensus 305 L~~~~~~~-~~~p~g~~~~~~~l~~~------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~ 377 (397)
T PRK07568 305 LNKIPGVV-CEKPKGAFYIIAKLPVD------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEE 377 (397)
T ss_pred HhcCCCce-ecCCCcceEEEEecCCC------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHH
Confidence 99987776 55788899999998742 456777777653 6999999988732 4699999997889
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 014603 403 ALEDGLGRMKAFYDRHAKKQ 422 (422)
Q Consensus 403 ~l~~~~~~l~~~~~~~~~~~ 422 (422)
++++++++|.++++++.+++
T Consensus 378 ~~~~~~~~l~~~l~~~~~~~ 397 (397)
T PRK07568 378 DLKRAMEILKEALEKYNKRK 397 (397)
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 99999999999999887653
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=373.80 Aligned_cols=385 Identities=27% Similarity=0.491 Sum_probs=309.2
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
+.++.+.+ ..++++..... .. ..++.++|+|+.|.|.. ..+++++.+.+++.+.+... ...|++..|.+++|+++
T Consensus 5 ~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~i~l~~g~p~~-~~~~p~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~i 79 (398)
T PRK08363 5 SERAMGVE-YAIRDVVLPAR-EL-EKKGIKVIRLNIGDPVK-FDFQPPEHMKEAYCRAIKEG-HNYYGPSEGLPELREAI 79 (398)
T ss_pred hHHHHhcc-HHHHHHHHHHH-HH-HhcCCCeEEEeCCCCCc-CCCCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHH
Confidence 34455444 34555443332 22 33578999999999852 23677899999999887653 35798889999999999
Q ss_pred HHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHH
Q 014603 97 ADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 176 (422)
++++++.+|+++++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|..++.++..+++++.+|++.+
T Consensus 80 a~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l 159 (398)
T PRK08363 80 VKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDI 159 (398)
T ss_pred HHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999888777333345677899999
Q ss_pred HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 177 EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 177 ~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
++.+.++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+.+.. .++..+....++++++||||.
T Consensus 160 ~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~-~~~~~~~~~~~vi~~~SfSK~ 238 (398)
T PRK08363 160 RKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKH-VSPGSLTKDVPVIVMNGLSKV 238 (398)
T ss_pred HhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcc-cCHHHcCcCCcEEEEecchhc
Confidence 9988888999999999999999999999999999999999999999999988776532 234444555579999999999
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh----hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN----ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
|+++|+|+||+++.++ +++++.+..... ...+++.+.|.++..+|.. .+.++++.+++++++++.+.+.
T Consensus 239 ~~~~GlRiG~~~~~~~------~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~ 311 (398)
T PRK08363 239 YFATGWRLGYIYFVDP------EGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKR 311 (398)
T ss_pred cCCccceEEEEEEeCc------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997221 234444443321 2246788899999988864 3578888999999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~ 410 (422)
|++++++. +..|.+|+|+|++++... ..++.+++..+++++||.+.||..|+. ++++|||++.+++++++++++
T Consensus 312 L~~~~~~~-~~~p~g~~~~~~~l~~~~---~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~ 387 (398)
T PRK08363 312 LNEIPGIS-TTKPQGAFYIFPRIEEGP---WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDR 387 (398)
T ss_pred HhcCCCCE-ecCCCeEEEEEEEeccCC---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHH
Confidence 99987776 557888999998886410 013556667777888999999998865 479999999888999999999
Q ss_pred HHHHHHHh
Q 014603 411 MKAFYDRH 418 (422)
Q Consensus 411 l~~~~~~~ 418 (422)
|++++++.
T Consensus 388 l~~~~~~~ 395 (398)
T PRK08363 388 FEEFMRER 395 (398)
T ss_pred HHHHHHHh
Confidence 99988764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=356.25 Aligned_cols=349 Identities=27% Similarity=0.461 Sum_probs=297.3
Q ss_pred ecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHH
Q 014603 50 LGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILT 128 (422)
Q Consensus 50 l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~ 128 (422)
|+.|.|+ +++|+-+.+++.+.+.....++|.+..|+++|++++++.+...+|....+ ++|++|.|+.+++..++.
T Consensus 36 LgqGfp~----~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~ 111 (420)
T KOG0257|consen 36 LGQGFPD----FPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALL 111 (420)
T ss_pred ccCCCCC----CCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHH
Confidence 9999966 79999999999999988778899999999999999999999877755555 579999999999999999
Q ss_pred HhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc------CCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 129 VLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL------PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 129 ~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+++++||+|++.+|.|..|.......|..++.++.. ....|.+|.+.++.+++++|+++++|+||||||.++|+
T Consensus 112 ~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsR 191 (420)
T KOG0257|consen 112 GLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSR 191 (420)
T ss_pred HHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCH
Confidence 999999999999999999999999999999999987 44668899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
+++++|+++|++||+++|.||+|..+.|++.....+..+ +..++++.++|++|+|++.|||+||++++ +.+
T Consensus 192 eeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp--------~~L 263 (420)
T KOG0257|consen 192 EELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGP--------KHL 263 (420)
T ss_pred HHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeech--------HHh
Confidence 999999999999999999999999999998755555444 45678999999999999999999999995 345
Q ss_pred HHHHHhhh-hhccCcchHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEE
Q 014603 282 VDSIKSFL-NISSDPATFIQGAVPQILEKTEE-------EFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMV 353 (422)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~ 353 (422)
...+...+ +.....++..|.|..+++..... .+..++.+.++++++.+.+.|+++ |+. +..|++++|+|+
T Consensus 264 ~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~-v~~p~gayyl~a 341 (420)
T KOG0257|consen 264 YSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLK-VTGPEGAYYLWA 341 (420)
T ss_pred hhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCc-cccCCCceEEEE
Confidence 66665555 34456777888888777764321 345558999999999999999999 888 669999999999
Q ss_pred ecCcccc----cC---CCCHHHHHHHHHHhcCeEEecCCCCCCC-------CeEEEEeccChHHHHHHHHHHH
Q 014603 354 KLNYSLL----EG---INSDMEFALKLAKEESVIVLPGITVGLK-------DWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 354 ~~~~~~~----~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~~-------~~iRis~~~~~~~l~~~~~~l~ 412 (422)
.++.... ++ ..++-.+...++++.|+.+.|++.|+.. +.+|++++-+++.+++++++++
T Consensus 342 dfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 342 DFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLK 414 (420)
T ss_pred eccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 9982110 11 1244567788999999999999999874 4567777778889999988887
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-49 Score=372.01 Aligned_cols=373 Identities=26% Similarity=0.447 Sum_probs=311.2
Q ss_pred HHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 18 EELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
+++.+...+.++.+..... ..+++|+|+.|+|. +++++.+.+++.+.+.+. ...|++..|.+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~g~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~la 71 (382)
T PRK06108 3 PAARALPESGIREVANAGR------GREGVLPLWFGESD----LPTPDFIRDAAAAALADG-ETFYTHNLGIPELREALA 71 (382)
T ss_pred hhhhhCCchHHHHHHHHHh------ccCCeEEecCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHH
Confidence 3555556566666654332 23578999999976 677899999999987664 346998899999999999
Q ss_pred HHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC-CCcccCHHHH
Q 014603 98 DYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA-KGWEVDLDAV 176 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l 176 (422)
+++.+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++.+.+ +++.+|++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l 151 (382)
T PRK06108 72 RYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRL 151 (382)
T ss_pred HHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHH
Confidence 999987787889999999999999999999999999999999999999999999999999999998653 3577899999
Q ss_pred HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCCCcccc-CCCCCeEEEecCc
Q 014603 177 EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG-NTPFVPMGVF-GSIVPVLTLGSIS 254 (422)
Q Consensus 177 ~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~-~~~~~~i~i~s~s 254 (422)
++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.++ +....++..+ ...+++++++|||
T Consensus 152 ~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 231 (382)
T PRK06108 152 LAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFS 231 (382)
T ss_pred HHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeech
Confidence 9988888999999999999999999999999999999999999999999998875 2222222222 2345789999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|+++|+|+||++++ +++++.+...... ..+++.+.|.++..+|+.. +.++++.+++++++++.+.+.|
T Consensus 232 K~~g~~G~RiG~~~~~--------~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L 302 (382)
T PRK06108 232 KNWAMTGWRLGWLVAP--------PALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDAL 302 (382)
T ss_pred hhccCcccceeeeeCC--------HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 4677777765532 3467888999999999753 5678888999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l 411 (422)
++++++. +..|.+|+|+|++++.. .++.+++..+++++||.+.||..|+. .+++|+|++.+++++++++++|
T Consensus 303 ~~~~~~~-~~~p~~g~~~~~~l~~~-----~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l 376 (382)
T PRK06108 303 RALPGVE-VAKPDGAMYAFFRIPGV-----TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERL 376 (382)
T ss_pred HhCCCCc-ccCCCeeEEEEEeCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 9888887 44788899999998642 24667888887888999999988864 5799999999899999999999
Q ss_pred HHHHH
Q 014603 412 KAFYD 416 (422)
Q Consensus 412 ~~~~~ 416 (422)
+++++
T Consensus 377 ~~~l~ 381 (382)
T PRK06108 377 RRFLA 381 (382)
T ss_pred HHHHh
Confidence 98874
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=369.82 Aligned_cols=375 Identities=23% Similarity=0.352 Sum_probs=307.3
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++++...+.+.++.+.... ....+++|+.|.|. .+.|+.+.+++.+.+... ...|++..|.+++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~p~----~~~p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~i 72 (387)
T PRK08912 5 NPVFADLPTTIFEVMSQLA-------REHGAINLGQGFPD----DPGPEDVRRAAADALLDG-SNQYPPMMGLPELRQAV 72 (387)
T ss_pred hHHHhhCCCCHHHHHHHHH-------hhCCeEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHH
Confidence 3466666666665555433 23578999999977 345677888887776543 46899999999999999
Q ss_pred HHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++++.+|+.++++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|.+++.+++++ +++.+|++.
T Consensus 73 a~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 151 (387)
T PRK08912 73 AAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAA 151 (387)
T ss_pred HHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHH
Confidence 999998888888998 999999999999999999999999999999999999999999999999998753 357899999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~s 254 (422)
+++.+.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+.. .+++++++|+|
T Consensus 152 l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 231 (387)
T PRK08912 152 LAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAG 231 (387)
T ss_pred HHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeech
Confidence 99998888999999999999999999999999999999999999999999988886543334443322 35789999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|+++|+|+||++++ +++++.+...... ..+.++..|.++..++.. .+.++++.++.++++++.+.+.|
T Consensus 232 K~~g~~GlRiG~~~~~--------~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L 302 (387)
T PRK08912 232 KIFSLTGWKVGFVCAA--------PPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGL 302 (387)
T ss_pred hhccCcCceeEEEecC--------HHHHHHHHHHHhhccccCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 4677777666543 235566678888777753 35678888999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEeccChHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~~~~~~l~~~~~ 409 (422)
+.+ ++. +..|.+++|+|+.++.... ..++.+++..+++++||.+.||..|+. .+++||+++.++++++++++
T Consensus 303 ~~~-g~~-~~~~~g~~~l~~~l~~~~~--~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~ 378 (387)
T PRK08912 303 RRI-GFP-VLPSQGTYFLTVDLAPLGL--AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVE 378 (387)
T ss_pred HhC-CCc-ccCCCcceEEEecccccCC--CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHH
Confidence 998 676 4477888999998864110 125667888877888999999998843 57999999988999999999
Q ss_pred HHHHHHHH
Q 014603 410 RMKAFYDR 417 (422)
Q Consensus 410 ~l~~~~~~ 417 (422)
+|.+++++
T Consensus 379 rl~~~l~~ 386 (387)
T PRK08912 379 RLAAARRR 386 (387)
T ss_pred HHHHHHhc
Confidence 99988753
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=370.67 Aligned_cols=369 Identities=24% Similarity=0.387 Sum_probs=302.5
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIAD 98 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~ 98 (422)
+++..+.+.++.+...+... ...++.++++|+.|.|. +++++.+.+++.+.+. ....|++..|.+++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~ 75 (393)
T TIGR03538 3 NLSRLQPYPFEKLAALLAGV-TPPASKPPIALSIGEPK----HPTPAFVLEALRENLH--GLSTYPTTKGLPELRQAIAR 75 (393)
T ss_pred hhhhCCccHHHHHHHHHHhh-hhhcCCCeEEecCCCCC----CCCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHH
Confidence 34555666666666544322 12257889999999976 5678899999998764 35689999999999999999
Q ss_pred HHhhcCCCC--CCCC-CEEEecCHHHHHHHHHHHhcCCCCE--EEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 99 YLNRDLPYK--LSPD-DVYLTLGCTQAIEVILTVLARPGAN--ILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 99 ~l~~~~~~~--~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
++++.++++ ++++ +|++|+|+++++..++++++++||. |+++.|+|..+...++..|.+++.+++++++++.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 155 (393)
T TIGR03538 76 WLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDF 155 (393)
T ss_pred HHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCH
Confidence 998877765 6775 7999999999999999999999986 9999999999999999999999999987666788999
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCc----cccC--CCCC
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPM----GVFG--SIVP 246 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~----~~~~--~~~~ 246 (422)
+++++.+.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++. ...+. ...+ ..++
T Consensus 156 ~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T TIGR03538 156 DAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRR 235 (393)
T ss_pred HHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhccccccccccc
Confidence 999988877899999999999999999999999999999999999999999998877542 22111 1121 2357
Q ss_pred eEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 247 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
+++++||||.|+++|+|+||++++ +++++++...... ..+++.+.|.++...+.. +.++++.++.++++
T Consensus 236 vi~i~S~SK~~~~~GlRvG~~i~~--------~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~ 305 (393)
T TIGR03538 236 CLVFHSLSKRSNLPGLRSGFVAGD--------AEILKAFLRYRTYHGCAMPIPTQLASIAAWND--EQHVRENRALYREK 305 (393)
T ss_pred EEEEecchhhcCCcccceEEEecC--------HHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC--hHHHHHHHHHHHHH
Confidence 999999999989999999999986 4677877766543 345677888888777754 56788889999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--------CCeEEEEe
Q 014603 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRITF 397 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------~~~iRis~ 397 (422)
++.+.+.|+++ +. +..|.+|+|+|++++. ++.++...+++++||.+.||..|+. .+++||++
T Consensus 306 ~~~~~~~L~~~--~~-~~~p~gg~f~~~~~~~-------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~ 375 (393)
T TIGR03538 306 FAAVLEILGQV--LD-LELPDAGFYLWPKVPG-------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL 375 (393)
T ss_pred HHHHHHHHHhh--Cc-ccCCCeeEEEEEECCC-------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe
Confidence 99999999875 33 3478999999999972 4667777877788999999998752 47999999
Q ss_pred ccChHHHHHHHHHHHHH
Q 014603 398 AVEPSALEDGLGRMKAF 414 (422)
Q Consensus 398 ~~~~~~l~~~~~~l~~~ 414 (422)
+.+++++++++++|+++
T Consensus 376 ~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 376 VAPLEECVEAAERIRSF 392 (393)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 98889999999999874
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=368.90 Aligned_cols=357 Identities=24% Similarity=0.363 Sum_probs=297.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCC-CCCC-CEEEecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK-LSPD-DVYLTLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~-~i~~~~g~ 119 (422)
..+.++|+|+.|.|. +++++.+.+++.+.+.......|++ .|.+++|+++++++++.+|+. ++++ +|++|+|+
T Consensus 41 ~~~~~~i~L~~g~p~----~~~~~~~~~~l~~~~~~~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs 115 (410)
T PRK06290 41 HPDMELIDMGVGEPD----EMADESVVEVLCEEAKKPENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGS 115 (410)
T ss_pred cCCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCH
Confidence 356789999999966 5677889999888765434456875 899999999999999888877 8886 79999999
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccc
Q 014603 120 TQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNV 199 (422)
Q Consensus 120 ~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~ 199 (422)
++++..++++++++||.|+++.|+|+.+...++..|.+++.++++.++++.+|++.+++.+.++++++++++|+||||.+
T Consensus 116 ~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v 195 (410)
T PRK06290 116 KPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAV 195 (410)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcC
Confidence 99999999999999999999999999999999999999999999776678889999998888789999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
++.+++++|+++|+++|++||+||+|..+.+++.. .++..+. ..+++++++||||.|+++|+|+||++++
T Consensus 196 ~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~-~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~-------- 266 (410)
T PRK06290 196 ATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKP-LSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGN-------- 266 (410)
T ss_pred CCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCC-cChhcCCCccccEEEEeechhhcCCchhheEeEEeC--------
Confidence 99999999999999999999999999998776532 2333332 2346799999999999999999999986
Q ss_pred hhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc
Q 014603 279 SGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
+++++.+...... ..+++.++|.++..+|++ ..++++.+++++++++.+.+.|++. ++. +..|++++|+|++++.
T Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p~g~f~l~v~lp~ 342 (410)
T PRK06290 267 ELIVKAFATVKDNNDSGQFIAIQKAGIYALDH--PEITEKIREKYSRRLDKLVKILNEV-GFK-AEMPGGTFYLYVKAPK 342 (410)
T ss_pred HHHHHHHHHHHhccccCCcHHHHHHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCCCeeeEEEEECCC
Confidence 4677877766543 335556889999999976 3578888999999999999999998 676 4478889999999975
Q ss_pred ccccC--CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHHHHHHHHHHHh
Q 014603 358 SLLEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 358 ~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~~~~ 418 (422)
....+ ..++.++...|+++.++.+.||..|+ +++||+++ .++++-+++++.|++.+.++
T Consensus 343 ~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~--~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 343 GTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG--HFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred ccccCCCCCCHHHHHHHHHHhCCEEEECCcccc--CeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 32111 12567888888888788888987653 79999998 46789999999999988664
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=368.32 Aligned_cols=378 Identities=24% Similarity=0.314 Sum_probs=314.3
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.|++.+....+++++..+.... ..+.+.|+|+.|.|. +++++.+.+++.+.+.......|++..|.+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ 75 (386)
T PRK07550 2 LNPLIAALFPPPIPEVRAWLAGYD--GADGPLIDLSQAVPG----YPPPPELLRALAEAAADPAAHLYGPVEGLPELREA 75 (386)
T ss_pred cchhhhhcCChHHHHHHHHHHHHh--hcCCCeEEeCCCCCC----CCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHH
Confidence 456788888888999887654432 236678999999976 45678899998887754445679888899999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++.+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++.++++++.+|++.
T Consensus 76 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 155 (386)
T PRK07550 76 YAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAA 155 (386)
T ss_pred HHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHH
Confidence 99999988888889999999999999999999999999999999999999999999999999999998765677789999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~s 254 (422)
+++.++++++++++++|+||||.++|.+++++|+++|+++|++||+||+|+.+.+++....++... +..++++++.|||
T Consensus 156 l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 235 (386)
T PRK07550 156 AEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFS 235 (386)
T ss_pred HHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecch
Confidence 999988889999999999999999999999999999999999999999999876543322222222 2345789999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|+++|+|+||++++ +++++.+..... ...+++.+.|.++..+++. .+.++++.++.++++++.+.+.|
T Consensus 236 K~~g~~G~RiG~i~~~--------~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L 306 (386)
T PRK07550 236 KSYALTGHRVGAVVAS--------PARIAEIEKFMDTVAICAPRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVF 306 (386)
T ss_pred hhccCcccceEeeecC--------HHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999986 467777776654 3446788999999998875 35778888889999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALEDGLGR 410 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~~~~~~ 410 (422)
++++++. + .+.+|+|+|++++... .++.+++..+++++||.|.||..|+. .+++||+++ .+++++++++++
T Consensus 307 ~~~~~~~-~-~~~g~~~~~~~~~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~ 380 (386)
T PRK07550 307 ARLPGWE-L-LASGAYFAYVRHPFPD----RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVER 380 (386)
T ss_pred HhCCCce-e-CCCceEEEEecCCCCC----CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHH
Confidence 9875654 3 4678899999886411 25778888888888999999998864 579999999 578999999999
Q ss_pred HHHH
Q 014603 411 MKAF 414 (422)
Q Consensus 411 l~~~ 414 (422)
|.++
T Consensus 381 l~~~ 384 (386)
T PRK07550 381 LRAF 384 (386)
T ss_pred HHhh
Confidence 9875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=366.04 Aligned_cols=375 Identities=24% Similarity=0.456 Sum_probs=312.0
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
+.|+.......++..+..+. +.+.+|+|+.|.|. +++++.+.+++.+.+... ...|++..|.+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~~~-~~~Y~~~~g~~~lr~~i 74 (387)
T PRK07683 6 NPRVKDIQISGIRQFSNMVQ------NYDNLISLTIGQPD----FPTPSHVKEAAKRAITEN-YTSYTHNAGLLELRKAA 74 (387)
T ss_pred hHHHHhCCccHHHHHHHHHH------hcCCeEEecCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHH
Confidence 56777777777777665432 24678999999865 566788999999988653 45898889999999999
Q ss_pred HHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++++.+|++++++ +|++|+|+++|+..++++++++||+|+++.|+|..+...++..|.+++.++.+. +++.+|.+.
T Consensus 75 a~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 153 (387)
T PRK07683 75 CNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEA 153 (387)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHH
Confidence 999998888888898 999999999999999999999999999999999999999999999999988753 467788899
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~s 254 (422)
+++.++++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+.+.. .++..+ +..+++++++|||
T Consensus 154 l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~vi~~~s~S 232 (387)
T PRK07683 154 LENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPH-TSIAHFPEMREKTIVINGLS 232 (387)
T ss_pred HHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCc-CChhhccCCcCCeEEEeecc
Confidence 99988888899999999999999999999999999999999999999999988775432 244443 2335789999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|++||+|+||++++ +++++++...... ..+++.+.|.++..+|.+. +.++++.+++++++++.+.+.|
T Consensus 233 K~~~~pGlRiG~i~~~--------~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l 303 (387)
T PRK07683 233 KSHSMTGWRIGFLFAP--------SYLAKHILKVHQYNVTCASSISQYAALEALTAG-KDDAKMMRHQYKKRRDYVYNRL 303 (387)
T ss_pred ccccCccceeEEEEcC--------HHHHHHHHHHHHhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 4677777765433 2355678899999899753 3567888889999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l 411 (422)
++. ++. +..|.+|+|+|+.++... .++.+++..+++++||.+.||..|+. ++++||+++.+++++.+++++|
T Consensus 304 ~~~-~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l 377 (387)
T PRK07683 304 ISM-GLD-VEKPTGAFYLFPSIGHFT----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRL 377 (387)
T ss_pred HHc-CCc-ccCCCeeEEEEEecccCC----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence 987 666 447888999998876411 14567777777889999999998865 5799999998899999999999
Q ss_pred HHHHHHhc
Q 014603 412 KAFYDRHA 419 (422)
Q Consensus 412 ~~~~~~~~ 419 (422)
.+++++-.
T Consensus 378 ~~~l~~~~ 385 (387)
T PRK07683 378 EAFLQQKA 385 (387)
T ss_pred HHHHHhhc
Confidence 99886543
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-49 Score=369.68 Aligned_cols=347 Identities=23% Similarity=0.368 Sum_probs=298.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+.++++|+.|+|. ++.++.+ +++.+.+.... ..|++..|.+++|++|++++. ++++++|++|+|++++
T Consensus 24 ~~~~~~~~~~~e~~----~~~~~~~-~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~-----~~~~~~vi~t~G~~~a 92 (373)
T PRK07324 24 AESCIDSLTLEELL----ALAGKNP-EAFYQELGQKK-LTYGWIEGSPEFKEAVASLYQ-----NVKPENILQTNGATGA 92 (373)
T ss_pred ccCCCCCCcHHHHH----hccCcch-HHHHHHHhcCC-ccCCCCCCCHHHHHHHHHHhc-----CCChhhEEEcCChHHH
Confidence 47889999999976 4666677 77777776543 489998999999999999984 3678999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+.+++.+++++||+|+++.|+|..+...++..|.+++.++++.++++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 93 l~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~ 172 (373)
T PRK07324 93 NFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDR 172 (373)
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999998776778889999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+++|+++|+++|+||+|..+.+++. ..++.. ..+++++++||||.|+++|+|+||++++ ++++
T Consensus 173 ~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~--~~~~~I~~~s~SK~~~~~G~RiG~i~~~--------~~li 241 (373)
T PRK07324 173 AYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIAD--LYEKGISTNSMSKTYSLPGIRVGWIAAN--------EEVI 241 (373)
T ss_pred HHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhh--ccCCEEEEecchhhcCCccceeEEEecC--------HHHH
Confidence 9999999999999999999999998877543 223322 2356899999999999999999999985 5688
Q ss_pred HHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 283 DSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 283 ~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
+++...... +.+++.+.|.++..+|+. .+.++++.++.++++++.+.+.|++.+++. +..|.+|+++|+.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~~p~gg~~~~i~~~~~--- 316 (373)
T PRK07324 242 DILRKYRDYTMICAGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWVAKEPRVS-YVKPKAVSTSFVKLDVD--- 316 (373)
T ss_pred HHHHHHhCcEEecCChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EECCCceEEEEEEeCCC---
Confidence 888887643 346677888888888864 456788888999999999999999887776 45788888888888642
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.++.+++.++++++||.|.||..|+.++++|||++.+++.+++++++|.++++++
T Consensus 317 --~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 317 --MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred --CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 2577888888888899999999998889999999988999999999999999875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=367.61 Aligned_cols=349 Identities=21% Similarity=0.410 Sum_probs=292.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQA 122 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a 122 (422)
..++|+|+.|.|. +++++.+.+++.+.+... ...|++..|.+++|+.+++++++.+|..+++ ++|++|+|++++
T Consensus 28 ~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~a 102 (384)
T PRK12414 28 QHDALNLSQGAPN----FAPDPALVEGVARAMRDG-HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEG 102 (384)
T ss_pred hCCeEEcCCCCCC----CCCCHHHHHHHHHHHHhC-CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHH
Confidence 4678999999966 567889999998877643 4689998999999999999998877876665 689999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..++++++.+||+|+++.|+|..+...++..|.+++.+++++ +++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 103 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~ 181 (384)
T PRK12414 103 LYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSA 181 (384)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCH
Confidence 9999999999999999999999999999999999999998754 357799999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
+++++|+++|+++|+++|+||+|..+.|++....++..+. ..+++++++||||.|+++|+|+||++++ +++
T Consensus 182 ~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~--------~~l 253 (384)
T PRK12414 182 ADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP--------AEL 253 (384)
T ss_pred HHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC--------HHH
Confidence 9999999999999999999999999888764433444333 2457999999999999999999999986 467
Q ss_pred HHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc
Q 014603 282 VDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360 (422)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (422)
++.+..... ...+++.+.|.++..+|+.. .+..+.++.++++++.+.+.|++. ++. +..|.+|+|+|++++...
T Consensus 254 ~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~gg~~~~~~~~~~~- 328 (384)
T PRK12414 254 MDEIRKVHQFMVFSADTPMQHAFAEALAEP--ASYLGLGAFYQRKRDLLARELAGS-RFE-LLPSEGSFFMLARFRHFS- 328 (384)
T ss_pred HHHHHHHHhheecCCCcHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCCCcceEEEEcccccC-
Confidence 787877664 23467889999999999753 233457788899999999999997 666 447888999998886310
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEeccChHHHHHHHHHHHH
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
+ ..+.+++..+++++||.+.||..|+. .+++||+++.+++++++++++|.+
T Consensus 329 -~-~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 329 -D-ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred -C-CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 0 13567777777888999999998853 478999999889999999999864
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=340.14 Aligned_cols=355 Identities=24% Similarity=0.400 Sum_probs=311.5
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..+++.|-+.+.+ |+.+|++++|+++.++++. .+|+ .+.+++-+++++|..+.+++.+.++.|++++|...++
T Consensus 24 ~~DvlPmWVADMD----f~~pp~i~~Al~~rvdhGv-fGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi 96 (388)
T COG1168 24 NEDVLPMWVADMD----FPTPPEIIEALRERVDHGV-FGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI 96 (388)
T ss_pred CCCcceeeeeccc----CCCCHHHHHHHHHHHhcCC-CCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhH
Confidence 4788999888844 8999999999999998864 4776 4567899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc-CCCCcccCHHHHHHhhcCC-ceEEEEeCCCCCcccccC
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL-PAKGWEVDLDAVEALADEN-TVALVIINPGNPCGNVYT 201 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~~~~~-~~~i~i~~p~nptG~~~~ 201 (422)
..+++.++++||.|++..|.|+++....+..|.++...|+. .++.|.+|.+.||+.+.+. ++++++||||||||.+++
T Consensus 97 ~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt 176 (388)
T COG1168 97 SLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWT 176 (388)
T ss_pred HHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcccc
Confidence 99999999999999999999999999999999999999986 3456888999999988664 689999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC--CCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI--VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
.+++.+|.++|.+||++||+||+|+.+.+.|+...++..+... ++.+++.|.||+|..+|+.+++++.++ +
T Consensus 177 ~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n-------~ 249 (388)
T COG1168 177 KEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISN-------R 249 (388)
T ss_pred HHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecC-------H
Confidence 9999999999999999999999999999999766676666543 678999999999999999999999986 3
Q ss_pred hHHHHHHhhh--hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecC
Q 014603 280 GIVDSIKSFL--NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLN 356 (422)
Q Consensus 280 ~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~ 356 (422)
++..++.+.. .....+|.++..|..++.+. .+.|++++.+.++.+++++.+.|.+ +|++. +..|++.+.+|+.+.
T Consensus 250 ~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~-G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~-v~~p~gTYL~WLD~r 327 (388)
T COG1168 250 ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ-GEPWLDELLEYLKDNRDYVADFLNKHLPGVK-VTEPQGTYLAWLDCR 327 (388)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-EecCCCceeeeeecc
Confidence 4544443333 23458899999999999986 4799999999999999999999998 58999 669999999999987
Q ss_pred cccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 357 YSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.-.. ++.+....++++.+|.+.+|..||. .+++|++++++.+.+++++++|..++++.
T Consensus 328 ~l~l----~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 328 ELGL----DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred ccCC----ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence 6432 4567778888999999999999987 57999999999999999999999988753
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=364.91 Aligned_cols=378 Identities=22% Similarity=0.450 Sum_probs=309.7
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
++++|+...+...+++++.... +.+++|+|+.|.|. +.+++.+.+++.+.+... ...|.+..|.+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~ 74 (391)
T PRK07309 6 RFNKQLDKIEVSLIRQFDQSIS------DIPGILKLTLGEPD----FTTPDHVKEAAKRAIDAN-QSHYTGMAGLLELRQ 74 (391)
T ss_pred HHHhhhhhcCccHHHHHHHHHH------hcCCeEEcCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHH
Confidence 3467888887777777765332 23679999999976 466788889988877643 347988889999999
Q ss_pred HHHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 95 AIADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
++++++++.+++.+.+ ++|++|+|+++++++++++++++||+|++++|+|.++...++..|.+++.++.+. +++.+|+
T Consensus 75 ~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~ 153 (391)
T PRK07309 75 AAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTP 153 (391)
T ss_pred HHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCH
Confidence 9999999877777664 7899999999999999999999999999999999999999999999999888643 4567899
Q ss_pred HHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEE
Q 014603 174 DAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250 (422)
Q Consensus 174 ~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i 250 (422)
+.+++.+++ +++++++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+++....++..+.. ++++++
T Consensus 154 ~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~ 232 (391)
T PRK07309 154 EMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILI 232 (391)
T ss_pred HHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEE
Confidence 999988753 5789999999999999999999999999999999999999999998886544444443332 579999
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
+|+||.|+++|+|+||++++ +++++++...... ..+++.+.|.++..+|++.. .+....++.++++++.+
T Consensus 233 ~S~SK~~g~~GlRvG~~v~~--------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 303 (391)
T PRK07309 233 NGLSKSHAMTGWRIGLIFAP--------AEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGK-DDALPMKKEYIKRRDYI 303 (391)
T ss_pred ecChhhccCccceeEEEEeC--------HHHHHHHHHHHhhcccCCChHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 4677877765432 34678889999999997632 33456677888999999
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDG 407 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~ 407 (422)
.+.|+++ ++. +..|.+|+|+|++++... ..++.+++.++++++||.+.||..|+. ++++||+++.+.++++++
T Consensus 304 ~~~l~~~-~~~-~~~p~gg~~~~~~l~~~~---~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~ 378 (391)
T PRK07309 304 IEKMTDL-GFK-IIKPDGAFYIFAKIPAGY---NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEA 378 (391)
T ss_pred HHHHHHC-CCe-ecCCCeeEEEEEECCCCC---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHH
Confidence 9999987 676 557888999999887431 014567777777888999999998865 579999999888999999
Q ss_pred HHHHHHHHHHhc
Q 014603 408 LGRMKAFYDRHA 419 (422)
Q Consensus 408 ~~~l~~~~~~~~ 419 (422)
+++|++++.++.
T Consensus 379 i~~l~~~~~~~~ 390 (391)
T PRK07309 379 MKRLKEYMEEHA 390 (391)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=371.74 Aligned_cols=364 Identities=21% Similarity=0.375 Sum_probs=294.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-----------CCCCCCCCCCCCHHHHHHHHHHHhhcCC--CCC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-----------ARFNCYSSTVGILPARRAIADYLNRDLP--YKL 108 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~ 108 (422)
.++.++|+|+... |....+.+.+.+.+.... .....|.+..|.++||+++|+++++.++ .++
T Consensus 44 ~np~g~i~l~~ae-----N~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v 118 (447)
T PLN02607 44 HNPSGVIQMGLAE-----NQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARF 118 (447)
T ss_pred cCCCceEEEechh-----hhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCc
Confidence 5677799999987 345667788877765331 1223577888999999999999998665 358
Q ss_pred CCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh-hCCCeEEEeeccCCCCcccCHHHHHHhhcC-----
Q 014603 109 SPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT-HSHLEVRHFDLLPAKGWEVDLDAVEALADE----- 182 (422)
Q Consensus 109 ~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----- 182 (422)
++++|++|+|++++++.++.+++++||.|+++.|+|+++...+. ..|++++.++.+..+++.+|++.++++++.
T Consensus 119 ~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~ 198 (447)
T PLN02607 119 DPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAAN 198 (447)
T ss_pred CHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999987666 578899888887666778999999987753
Q ss_pred -CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc----C--C-CCCeEEEecCc
Q 014603 183 -NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF----G--S-IVPVLTLGSIS 254 (422)
Q Consensus 183 -~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~----~--~-~~~~i~i~s~s 254 (422)
++++++++||+||||.++|.+++++|+++|+++|+++|+||+|..+.|++..+.++..+ + . .++++++.|+|
T Consensus 199 ~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~S 278 (447)
T PLN02607 199 IRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLS 278 (447)
T ss_pred CCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcch
Confidence 67899999999999999999999999999999999999999999888876544444322 1 1 35799999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHH
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDR 332 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~ 332 (422)
|.|+++|+|+||+++.+ +++...+.....+ ..++.+.|.++..+|++.. +.++.+.+++++++++.+.+.
T Consensus 279 K~fg~~GlRvG~ivs~n-------~~l~~~~~~~~~~-~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~ 350 (447)
T PLN02607 279 KDLGLPGFRVGTIYSYN-------DKVVTTARRMSSF-TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQG 350 (447)
T ss_pred hcCCCCcceEEEEEEcC-------HHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999843 4566655544332 3567789999999998743 467788899999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCccccc-CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALEDGL 408 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~~~~ 408 (422)
|++. ++. +..+.+|+|+|++++..... ......++..+++++.||.|.||..|+. ++|+||+++ .+++.+++++
T Consensus 351 L~~~-gi~-~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl 428 (447)
T PLN02607 351 LRRA-GIE-CLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVAL 428 (447)
T ss_pred HHhC-CCC-cccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHH
Confidence 9987 777 44788999999999642110 1112345666777778999999998865 789999999 4899999999
Q ss_pred HHHHHHHHHhcc
Q 014603 409 GRMKAFYDRHAK 420 (422)
Q Consensus 409 ~~l~~~~~~~~~ 420 (422)
++|.++++++++
T Consensus 429 ~Ri~~~l~~~~~ 440 (447)
T PLN02607 429 KRIHRFMDRRKT 440 (447)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=375.09 Aligned_cols=384 Identities=22% Similarity=0.336 Sum_probs=301.6
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC--C-CCCCCCCCCCCHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS--A-RFNCYSSTVGILPARRA 95 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~--~-~~~~y~~~~g~~~lr~~ 95 (422)
.+.+.+++.+|+++... +.+++|+|+.+.+. +|. .++++..+.+.. + ....|++..|.+++|++
T Consensus 110 ~~~~~~~~~~r~v~~~~-------~~p~~i~~~~~~~~----fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lRea 176 (534)
T PLN02231 110 SLGQQPITFFREVLALC-------DHPSLLDKSETHGL----FSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDA 176 (534)
T ss_pred HcCCCccHHHHHHHHhc-------cCCccCCCCCcccc----CCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHH
Confidence 34556667778877533 35688999865433 343 455555555554 2 35679999999999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
|++++.+..|+.+++++|++|+|+++++..++++++ .+||.|+++.|+|+.|...+...|.+++.++++.+++|++|++
T Consensus 177 IA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~ 256 (534)
T PLN02231 177 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEIS 256 (534)
T ss_pred HHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHH
Confidence 999999888889999999999999999999999998 4799999999999999999999999999999977677899999
Q ss_pred HHHHhhcC------CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCCCccccC-----
Q 014603 175 AVEALADE------NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG-NTPFVPMGVFG----- 242 (422)
Q Consensus 175 ~l~~~~~~------~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~----- 242 (422)
+|++.+++ +++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|+ +..+.++..+.
T Consensus 257 ~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~ 336 (534)
T PLN02231 257 ELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGY 336 (534)
T ss_pred HHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhcc
Confidence 99988754 6788999999999999999999999999999999999999999999885 33443443321
Q ss_pred --CCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhc-----h-HH
Q 014603 243 --SIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKT-----E-EE 313 (422)
Q Consensus 243 --~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~-~~ 313 (422)
.+.++++++|+||.+ +.+|+|+||+++.+. .+++++++........+++...|.++..+++.. . +.
T Consensus 337 ~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~-----~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~ 411 (534)
T PLN02231 337 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF-----TSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYES 411 (534)
T ss_pred ccCCceEEEEeccCcccccCCccceEEEEEecC-----CHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHH
Confidence 123589999999975 789999999987421 156778777665544466778888888888531 1 22
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEec--Ccccc-----cCCCCHHHHHHHHHHhcCeEEec
Q 014603 314 ---FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKL--NYSLL-----EGINSDMEFALKLAKEESVIVLP 383 (422)
Q Consensus 314 ---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~--~~~~~-----~~~~~~~~~~~~l~~~~gi~v~~ 383 (422)
+....++.++++++.+.+.|++++++. +..|++|+|+|.++ +.... .+...+..++.+++++.||.+.|
T Consensus 412 ~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~-~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvP 490 (534)
T PLN02231 412 YMAEKDGILSSLARRAKTLEDALNSLEGVT-CNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVP 490 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeC
Confidence 233457889999999999999998888 55899999999555 32110 00112334556788888999999
Q ss_pred CCCCCC---CCeEEEEeccChHHHHHHHHHHHHHHHHhccc
Q 014603 384 GITVGL---KDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 384 g~~~~~---~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
|..|+. ..++|+++..+++++++++++|.++++++-+|
T Consensus 491 Gs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~~~~~ 531 (534)
T PLN02231 491 GSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFMDE 531 (534)
T ss_pred CcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 34699999999999999999999998876543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=369.72 Aligned_cols=359 Identities=18% Similarity=0.228 Sum_probs=287.9
Q ss_pred HHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC----CCCCCCCCCCCHHHHHHHHHHHhhcCC
Q 014603 30 GVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA----RFNCYSSTVGILPARRAIADYLNRDLP 105 (422)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~~ 105 (422)
++.++..+......+.++++|+.|++. +++++.+.+++.+.+... ....|++..|.++||+++++++.+.+|
T Consensus 19 ~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g 94 (409)
T PRK07590 19 EIARRVNAFREANPEAKIIRLGIGDVT----QPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARG 94 (409)
T ss_pred HHHHHHHHHhhhcCCCceEEecCcCCC----CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 344444444333346789999999966 577888999998887642 345798889999999999999988888
Q ss_pred CCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCe-----------EEEeeccCCCCcccCHH
Q 014603 106 YKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLE-----------VRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 106 ~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~d~~ 174 (422)
+++++++|++|+|+++++..+. .++.+||+|++++|+|+.+...++..|.. ++.++++.++++..|.+
T Consensus 95 ~~~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 173 (409)
T PRK07590 95 CDISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP 173 (409)
T ss_pred CcCChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCc
Confidence 8999999999999999999865 45689999999999999999999999986 78888765555555532
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecC
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSI 253 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~ 253 (422)
.++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..++. .+++++++||
T Consensus 174 ------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~Sf 247 (409)
T PRK07590 174 ------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSF 247 (409)
T ss_pred ------ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecC
Confidence 257899999999999999999999999999999999999999999998776543344444443 2468999999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHH------------HHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDS------------IKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
||.|++||+|+||++++ +++++. +..... ...+++.+.|.++..++......++++.++
T Consensus 248 SK~~~~pGlRiG~~i~~--------~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~ 319 (409)
T PRK07590 248 SKTAGFTGTRCAYTVVP--------KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELID 319 (409)
T ss_pred ccccCCcCceeEEEEcC--------HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999986 345542 111111 123567889999988887534578888999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA 398 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~ 398 (422)
.++++++.+.+.|+++ ++. +..|.+|+|+|++++.. .++.++...+++++||.+.||..|+. .+++||++.
T Consensus 320 ~~~~~r~~l~~~L~~~-~~~-~~~~~g~~f~wi~~~~~-----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 392 (409)
T PRK07590 320 YYMENAKIIREGLESA-GFE-VYGGVNAPYIWVKTPDG-----MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF 392 (409)
T ss_pred HHHHHHHHHHHHHHhc-CCc-eecCCcceEEEEECCCC-----CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc
Confidence 9999999999999997 666 44678899999999752 24667777787788999999998865 469999987
Q ss_pred cChHHHHHHHHHHHHH
Q 014603 399 VEPSALEDGLGRMKAF 414 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~ 414 (422)
.+++++++++++|.++
T Consensus 393 ~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 393 GSRENVLEAMERIKKA 408 (409)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7889999999999875
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=366.38 Aligned_cols=370 Identities=21% Similarity=0.320 Sum_probs=305.9
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
+.|+...+.+.++...... ++.++|+|+.|.|+ ++.++.+.+++.+.+... ...|++..|.+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~~~----~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~~ 76 (386)
T PRK09082 9 QSKLPNVGTTIFTVMSALA-------AEHGAINLSQGFPD----FDGPPYLVEALAYAMAAG-HNQYPPMTGVAALREAI 76 (386)
T ss_pred hhHhhccCccHHHHHHHHH-------hhCCEEEecCCCCC----CCCCHHHHHHHHHHHHcC-CCCCCCCCCcHHHHHHH
Confidence 4466666655444443322 34678999999866 566788999998877653 45798889999999999
Q ss_pred HHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++.+.++...+++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|.+++.++++. .++.+|++.
T Consensus 77 a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~ 155 (386)
T PRK09082 77 AAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PDFRVDWQR 155 (386)
T ss_pred HHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccccCCHHH
Confidence 999988777776665 899999999999999999999999999999999999999999999999999864 357899999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~s 254 (422)
+++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++....++..+.. .+++++++|||
T Consensus 156 l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~S 235 (386)
T PRK09082 156 FAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFG 235 (386)
T ss_pred HHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeech
Confidence 99998888999999999999999999999999999999999999999999998886544444444332 46799999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|+++|+|+||++++ +++++.+..... ...+++.+.|.++..+++. .+.++++.++.++++++.+.+.|
T Consensus 236 K~~~~~G~RiG~iv~~--------~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L 306 (386)
T PRK09082 236 KTYHVTGWKVGYCVAP--------AALSAEFRKVHQYNTFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAAL 306 (386)
T ss_pred hhccchhhhhhhhhCC--------HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 468888877653 3456788899998888863 35778888899999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEeccChHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~~~~~~l~~~~~ 409 (422)
++. ++. +..+.+|+|+|++++.. .+ .++.++...+++++||.+.||..|+. .+++|++++.++++++++++
T Consensus 307 ~~~-~~~-~~~~~g~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~ 381 (386)
T PRK09082 307 ANS-RFK-LLPCEGTYFQLVDYSAI--SD-LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAE 381 (386)
T ss_pred HhC-CCc-ccCCCeeEEEEEecccc--CC-CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHH
Confidence 986 677 54788899999998631 11 25677888888889999999997743 47999999988999999999
Q ss_pred HHHH
Q 014603 410 RMKA 413 (422)
Q Consensus 410 ~l~~ 413 (422)
+|++
T Consensus 382 rl~~ 385 (386)
T PRK09082 382 RLCQ 385 (386)
T ss_pred HHhh
Confidence 9875
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=361.49 Aligned_cols=371 Identities=25% Similarity=0.409 Sum_probs=305.3
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIAD 98 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~ 98 (422)
+++.++.+.++.+...+ ...+++||+.|.|+. +.++.+.+++.+.+... ...|++..|.+++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~p~~----~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~ 72 (387)
T PRK07777 5 RLRPFGTTIFAEMSALA-------VRTGAVNLGQGFPDE----DGPPEMLEAAQEAIAGG-VNQYPPGPGIPELRAAIAA 72 (387)
T ss_pred hhhhcCccHHHHHHHHH-------hhCCeEEccCCCCCC----CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHH
Confidence 56777777777777655 235789999999773 44567788877776543 4679988999999999999
Q ss_pred HHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC-CCcccCHHHH
Q 014603 99 YLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA-KGWEVDLDAV 176 (422)
Q Consensus 99 ~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l 176 (422)
++.+.+|..++++ +|++|+|+++++.+++.+++++||+|+++.|+|+.+...++..|..++.++.++. .++.+|++++
T Consensus 73 ~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l 152 (387)
T PRK07777 73 QRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDAL 152 (387)
T ss_pred HHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHH
Confidence 9988788777776 7999999999999999999999999999999999999999999999998988765 3677999999
Q ss_pred HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCcc
Q 014603 177 EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISK 255 (422)
Q Consensus 177 ~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK 255 (422)
++.++++++++++++|+||||.+++.+++++|+++|+++++++|+||+|..+.+.+....++..+.. .++++++.||||
T Consensus 153 ~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 232 (387)
T PRK07777 153 RAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAK 232 (387)
T ss_pred HHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechh
Confidence 9988888999999999999999999999999999999999999999999988876544334444332 457899999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.|+++|+|+||++++ +++++.+...... ....+.+.|.++..++... +.++++.++.++++++.+.+.|+
T Consensus 233 ~~g~~GlRiG~~~~~--------~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 303 (387)
T PRK07777 233 TFNVTGWKIGWACGP--------APLIAAVRAAKQYLTYVGGAPFQPAVAHALDHE-DAWVAALRDSLQAKRDRLAAGLA 303 (387)
T ss_pred hccCcCceeEEEecC--------HHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 4677777765542 3355677888888888643 57788888999999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-----CCeEEEEeccChHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~~~~~~l~~~~~ 409 (422)
++ ++. +..|.+++|+|++++.. +..++.+++..+++++||.|.||..|+. ++++||+++.++++++++++
T Consensus 304 ~~-~~~-~~~~~g~~~~~~~~~~~---~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~ 378 (387)
T PRK07777 304 EA-GFE-VHDSAGTYFLCADPRPL---GYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIR 378 (387)
T ss_pred hC-CCC-ccCCCcceEEEeccccc---CCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHH
Confidence 97 676 44778899999887531 1125678888887788999999987753 46899999988999999999
Q ss_pred HHHHHH
Q 014603 410 RMKAFY 415 (422)
Q Consensus 410 ~l~~~~ 415 (422)
+|.++.
T Consensus 379 ~l~~~~ 384 (387)
T PRK07777 379 RLRALR 384 (387)
T ss_pred HHHHHh
Confidence 998764
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=370.37 Aligned_cols=363 Identities=20% Similarity=0.359 Sum_probs=290.1
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-----------CCCCCCCCCCCCHHHHHHHHHHHhhcCC--CCC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-----------ARFNCYSSTVGILPARRAIADYLNRDLP--YKL 108 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~ 108 (422)
.++.++|+|+.+... ++ .+.+.+.+.+.... .....|++..|.++||++||+++++.++ ..+
T Consensus 35 ~~p~g~i~L~~~En~----l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v 109 (468)
T PLN02450 35 KNPSGIIQMGLAENQ----LS-FDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTF 109 (468)
T ss_pred cCCCeeEEeehhHhH----hh-HHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCc
Confidence 345679999999844 23 35666665543210 1234688888999999999999987665 347
Q ss_pred CCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh-hCCCeEEEeeccCCCCcccCHHHHHHhhcC-----
Q 014603 109 SPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT-HSHLEVRHFDLLPAKGWEVDLDAVEALADE----- 182 (422)
Q Consensus 109 ~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----- 182 (422)
++++|++|+|+++++..++.+++++||.|++++|+|..+...+. ..|++++.++.+.++++.+|++.+++.+.+
T Consensus 110 ~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~ 189 (468)
T PLN02450 110 DPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLN 189 (468)
T ss_pred ChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999987777 589999999887667788899999887643
Q ss_pred -CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc---------CCCCCeEEEec
Q 014603 183 -NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF---------GSIVPVLTLGS 252 (422)
Q Consensus 183 -~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~---------~~~~~~i~i~s 252 (422)
+++++++++|+||||.+++.+++++|+++|+++|++||+||+|+.+.|++..+.++... +..+++++++|
T Consensus 190 ~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S 269 (468)
T PLN02450 190 LKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYS 269 (468)
T ss_pred CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEe
Confidence 68899999999999999999999999999999999999999999888876443332211 12467999999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICC 330 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~ 330 (422)
|||.|+++|+|+||+++++ +.+.+.+..... ....+.+.|.++..+|++.. ..++++.+++++++++.+.
T Consensus 270 ~SK~~~l~GlRiG~li~~~-------~~l~~~~~~~~~-~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~ 341 (468)
T PLN02450 270 LSKDLGLPGFRVGAIYSND-------EMVVSAATKMSS-FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLV 341 (468)
T ss_pred ccccCCCCCccEEEEEECC-------HHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999863 234555554432 23567899999999998743 3478888999999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCccccc-CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALED 406 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~~ 406 (422)
+.|+++ ++. +..|.+|+|+|++++..... ......++...++++.||.+.||..|+. .+|+||+++ .+++++++
T Consensus 342 ~~L~~~-gi~-~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~ 419 (468)
T PLN02450 342 SGLEAA-GIK-CLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDL 419 (468)
T ss_pred HHHHHc-CCc-ccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHH
Confidence 999998 777 55788999999998642110 1112345677777888999999998865 689999999 58999999
Q ss_pred HHHHHHHHHHHhc
Q 014603 407 GLGRMKAFYDRHA 419 (422)
Q Consensus 407 ~~~~l~~~~~~~~ 419 (422)
++++|++++.+..
T Consensus 420 ~l~ri~~~l~~~~ 432 (468)
T PLN02450 420 AMKRLKSFVESDS 432 (468)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=358.01 Aligned_cols=339 Identities=23% Similarity=0.368 Sum_probs=279.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+.++++|+.|.|. +++++.+.+++.+... ....|++..|.+++|+++++++++.+|.++++++|++|+|++++
T Consensus 22 ~~~~~i~l~~~~p~----~~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~a 95 (374)
T PRK05839 22 KEYKGLDLTIGEPQ----FETPKFIQDALKNNAH--LLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREV 95 (374)
T ss_pred CCCCeEEcCCCCCC----CCCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHH
Confidence 36799999999966 5677889998887653 35689998999999999999999888888999999999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCccccc
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~ 200 (422)
+..++.+++ ++||.|+++.|+|..+...++..|++++.++.+.++++.+|.+..+ + ++++++++++||||||.++
T Consensus 96 l~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~i~nP~NPTG~~~ 172 (374)
T PRK05839 96 LFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVILNSPNNPTGRTL 172 (374)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEEEeCCCCCcCccc
Confidence 999888764 5789999999999999999999999999999876666766655432 2 3689999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc------CCCCCeEEEecCccccCCCCceeEEEEeeCCCC
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF------GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNG 274 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~ 274 (422)
+.+++++|+++|+++|++||+||+|..+.+++. ..++... ...+++++++||||.|++||+|+||++++
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~---- 247 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDECYSEIYENTP-PPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGD---- 247 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccchhhcccCCC-CCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecC----
Confidence 999999999999999999999999998754332 2222211 12358999999999999999999999985
Q ss_pred cccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEE
Q 014603 275 ILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMV 353 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~ 353 (422)
+++++++...... ..+.+.+.|.++..++.. +.++++.++.++++++.+.+.| ++. .|.+|+|+|+
T Consensus 248 ----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l----~~~---~p~gg~fi~~ 314 (374)
T PRK05839 248 ----ASILKKYKAYRTYLGCASPLPLQKAAAVAWLD--DEHAEFFRNIYAKNLKLAREIL----GIT---IPPATFYVWL 314 (374)
T ss_pred ----HHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHhc----CCC---CCCeeEEEEE
Confidence 4678877766532 345677788888877754 5778888888989888887765 332 6788999999
Q ss_pred ecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
+++ +..++..++++++||.|.||..|+. .+++|||++.+++++++++++|+++++
T Consensus 315 ~~~--------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 315 PVD--------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred eCC--------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 986 3567777777778999999987764 489999999889999999999999875
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=367.28 Aligned_cols=362 Identities=20% Similarity=0.352 Sum_probs=285.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-----------CCCCCCCCCCCCHHHHHHHHHHHhhcCC--CCCC
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-----------ARFNCYSSTVGILPARRAIADYLNRDLP--YKLS 109 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~ 109 (422)
++.++|+|+.+. |....+.+.+.+.+.... .....|++..|.+++|++||+++++.+| +.++
T Consensus 44 np~g~i~l~~aE-----N~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~ 118 (496)
T PLN02376 44 NPHGIIQMGLAE-----NQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFD 118 (496)
T ss_pred CCCceEEeecch-----hhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCC
Confidence 355799999987 212234444444433211 1234688889999999999999998776 5689
Q ss_pred CCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh-hCCCeEEEeeccCCCCcccCHHHHHHhh------cC
Q 014603 110 PDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT-HSHLEVRHFDLLPAKGWEVDLDAVEALA------DE 182 (422)
Q Consensus 110 ~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~~------~~ 182 (422)
+++|++|+|+++++..++.++++|||.|++++|+|+++...+. ..|++++.++++.++++++|++.+++.+ ..
T Consensus 119 pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~ 198 (496)
T PLN02376 119 PERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNK 198 (496)
T ss_pred hhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988777 5899999999876667889999987642 23
Q ss_pred CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc----CC---C-CCeEEEecCc
Q 014603 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF----GS---I-VPVLTLGSIS 254 (422)
Q Consensus 183 ~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~----~~---~-~~~i~i~s~s 254 (422)
+++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++..+.++..+ +. + ++++++.|||
T Consensus 199 ~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~S 278 (496)
T PLN02376 199 KVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLS 278 (496)
T ss_pred CeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEecc
Confidence 67889999999999999999999999999999999999999999988876555554333 11 1 3467799999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHH
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDR 332 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~ 332 (422)
|.|++||+|+||+++++ +.+...+..... .+..+.+.|.++..+|++.. +.++.+.+++++++++.+.+.
T Consensus 279 K~~glpGlRvG~li~~~-------~~l~~~~~~~~~-~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~ 350 (496)
T PLN02376 279 KDMGLPGFRVGIVYSFN-------DSVVSCARKMSS-FGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTG 350 (496)
T ss_pred ccCCCCcceEEEEEECC-------HHHHHHHHHHhh-cCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 345555444332 33578899999999998633 456677788999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccc--cCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLL--EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALEDG 407 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~~~ 407 (422)
|++. ++. +..|.+|+|+|++++.... ....+..++...++++.||.+.||..|+. ++|+|||++ .++++++++
T Consensus 351 L~~~-gi~-~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~a 428 (496)
T PLN02376 351 IKKA-DIA-CLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVA 428 (496)
T ss_pred HHHC-CCc-ccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHH
Confidence 9987 777 4478889999999964211 01112356777777778999999999864 689999999 588999999
Q ss_pred HHHHHHHHHHhc
Q 014603 408 LGRMKAFYDRHA 419 (422)
Q Consensus 408 ~~~l~~~~~~~~ 419 (422)
+++|++++.+..
T Consensus 429 l~rl~~~l~~~~ 440 (496)
T PLN02376 429 LGRIQDFVSKNK 440 (496)
T ss_pred HHHHHHHHHHhh
Confidence 999999997654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=353.97 Aligned_cols=341 Identities=24% Similarity=0.408 Sum_probs=287.0
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHHHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAIEV 125 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~ 125 (422)
+++|+.|+|. +++++.+.+++.+... ....|+++.|.+++|+++++++.+.+|++++++ +|++|+|+++++..
T Consensus 2 ~~~~~~g~p~----~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~ 75 (350)
T TIGR03537 2 LFDFGTGDPK----EPTPPFIRKALIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFH 75 (350)
T ss_pred eEeccCCCCC----CCCCHHHHHHHHHHHh--ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHH
Confidence 5899999965 5778899999988764 356799889999999999999998888888898 99999999999999
Q ss_pred HHHHhcCCC---CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 126 ILTVLARPG---ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 126 ~~~~l~~~g---d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
++.+++++| |+|+++.|+|..+...++..|.+++.++.++++++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 76 ~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~ 155 (350)
T TIGR03537 76 FPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPR 155 (350)
T ss_pred HHHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCH
Confidence 999999887 69999999999999999999999999998766677889999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+++|+++|+++|+||+|..+.+++ ...++..++ .+++++++|+||.++++|+|+||++++ +++.
T Consensus 156 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~--------~~~~ 225 (350)
T TIGR03537 156 SYLKETIAMCREHGIILCSDECYTEIYFGE-PPHSALEVG-IENVLAFHSLSKRSGMTGYRSGFVAGD--------EKLI 225 (350)
T ss_pred HHHHHHHHHHHHcCcEEEEeccccccccCC-CCCchhhcC-cCCEEEEeecccccCCccccceeeecC--------HHHH
Confidence 999999999999999999999999876644 222333333 357999999999999999999999875 4677
Q ss_pred HHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 283 DSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 283 ~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
+++...... ..+++.+.|.++.+++.. +.++++.++.++++++.+.+.|++. ++. +..|.+|+|+|+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~r~~l~~~~~~~~~~l~~~-g~~-~~~~~g~~~~~~~~~~~--- 298 (350)
T TIGR03537 226 SFLRKLRANFGVASPDFVQAAAKAAWSD--DNHVLERRKIFKRKRDLFIEFFNKV-GLE-YLYPDATFYLWVKVPSG--- 298 (350)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCCeEEEEEEECCCC---
Confidence 777776543 234455677877777764 4677888899999999999999987 676 55788899999998742
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
.++.++...+++ +||.|.||..|+. .+++||+++.+++++++++++|++
T Consensus 299 --~~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 299 --IDAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred --CCHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 246677777755 6999999998865 589999998788999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=354.48 Aligned_cols=356 Identities=20% Similarity=0.353 Sum_probs=294.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~ 121 (422)
.+.++++|+.|.|. ...++.+.+++.+.+.......|++..|.+++|+++++++.+.+|+.++++ ++++|+|+++
T Consensus 27 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~ 102 (395)
T PRK08175 27 RGEDIIDFSMGNPD----GPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKE 102 (395)
T ss_pred cCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence 36889999999876 345677888888777655567899999999999999999998888888887 7999999999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc---CCceEEEEeCCCCCccc
Q 014603 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD---ENTVALVIINPGNPCGN 198 (422)
Q Consensus 122 a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~nptG~ 198 (422)
+++.++..++++||+|++++|+|..+...++..|.+++.++.+.+++ +.+.+++.++ ++++++++++|+||||.
T Consensus 103 ~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~ 179 (395)
T PRK08175 103 GLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESYPKPKMMILGFPSNPTAQ 179 (395)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence 99999999999999999999999998888889999999998865433 4677777665 36888999999999999
Q ss_pred ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEEeeCCCCccc
Q 014603 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ 277 (422)
Q Consensus 199 ~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~ 277 (422)
+++.+++++|+++|+++|++||+||+|..+.+++....++..+.. .+++++++||||.|++||+|+||++++
T Consensus 180 ~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~------- 252 (395)
T PRK08175 180 CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGN------- 252 (395)
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCC-------
Confidence 999999999999999999999999999988886654444444432 346789999999999999999999985
Q ss_pred chhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecC
Q 014603 278 DSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLN 356 (422)
Q Consensus 278 ~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~ 356 (422)
+++++++...... ..+++.+.|.++..++.. .+.++++.++.++++++.+.+.|+++ ++. +..|.+|+|+|++++
T Consensus 253 -~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p~~g~~i~i~l~ 328 (395)
T PRK08175 253 -PELVSALARIKSYHDYGTFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWM-VEMPKASMYVWAKIP 328 (395)
T ss_pred -HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCCCEEEEEEEECC
Confidence 5788888776643 345667788888888864 35678888999999999999999998 676 447888999999997
Q ss_pred cccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 357 YSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.... ..++.+++..+++++||.|.||..|+. ++++||+++.+++.+++++++|.+++++.
T Consensus 329 ~~~~--~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 329 EPYA--AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRAD 390 (395)
T ss_pred cccC--CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 5310 013567777777788999999988865 46999999988899999999999998753
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=357.68 Aligned_cols=354 Identities=24% Similarity=0.399 Sum_probs=301.7
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC--CC-CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS--AR-FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~--~~-~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+..++|+.|.|.. .+.+...+.+++.+.... .. ...|.+..|.++||+.+++++....|+.+++++|++|+|+++
T Consensus 89 ~~~i~f~~g~p~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~ 166 (459)
T COG1167 89 PSVIDFAGGLPDP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQ 166 (459)
T ss_pred CceecCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHH
Confidence 7889999998663 344556666666666543 22 468888899999999999999988899999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC-ceEEEEeCC--CCCccc
Q 014603 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN-TVALVIINP--GNPCGN 198 (422)
Q Consensus 122 a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~i~i~~p--~nptG~ 198 (422)
|++++.+.+++|||+|++++|+|++....++..|.+++.+|++. .++|+|.|++.++.. ++++ ++.| +||||.
T Consensus 167 al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~---~G~~~e~le~~~~~~~~k~~-y~~P~~qNPtG~ 242 (459)
T COG1167 167 ALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDE---DGIDPEALEEALAQWKPKAV-YVTPTFQNPTGV 242 (459)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC---CCCCHHHHHHHHhhcCCcEE-EECCCCCCCCCC
Confidence 99999999999999999999999999999999999999999863 358999999988764 5555 4445 899999
Q ss_pred ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 199 ~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
+||.++.++|+++|++||++||+||.|+.+.+++.+..++..++..++|++++||||+ ..||+|+||++++
T Consensus 243 tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~-l~PglRlG~vv~p-------- 313 (459)
T COG1167 243 TMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKT-LAPGLRLGYVVAP-------- 313 (459)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhh-cccccceeeeeCC--------
Confidence 9999999999999999999999999999999998777778888888899999999999 6999999999997
Q ss_pred hhHHHHHHhhhh-hccCcchHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCceEEEEec
Q 014603 279 SGIVDSIKSFLN-ISSDPATFIQGAVPQILEKT-EEEFFSKITDILRETADICCDRLKEI-PCITCPKKPEGSMFVMVKL 355 (422)
Q Consensus 279 ~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~g~~~~~~~ 355 (422)
+++++++..... .+..++.+.|.++...+... -+.++.+.+..++++++.+.+.|++. |+...+..|.+|+|+|+++
T Consensus 314 ~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l 393 (459)
T COG1167 314 PELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLEL 393 (459)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEc
Confidence 578888887764 45688889999999999853 38899999999999999999999996 4333367899999999999
Q ss_pred CcccccCCCCHHHHHHHHHHhcCeEEec-CCCCCC----CCeEEEEec-cChHHHHHHHHHHHHHHHHhc
Q 014603 356 NYSLLEGINSDMEFALKLAKEESVIVLP-GITVGL----KDWLRITFA-VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~~~~----~~~iRis~~-~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.. .+..+++... .++|+.+.| |..|.. .+++|++++ .+++++++++++|.+++++..
T Consensus 394 ~~~-----~~~~~l~~~a-~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 394 PEG-----IDARELLAAA-LEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred CCC-----CCHHHHHHHH-HHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 875 2566666665 556999998 888865 358999999 678999999999999998754
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=348.29 Aligned_cols=368 Identities=22% Similarity=0.357 Sum_probs=292.5
Q ss_pred HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCC
Q 014603 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLP 105 (422)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~ 105 (422)
++.+++.....-...+..++++|+.|.|+ +++++.+.+++.+..... ....|++..|.+++|+.+++++++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~g~p~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~ 91 (394)
T PRK06836 16 IRKMFEEGARLKAEYGADNVFDFSLGNPS----VPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFG 91 (394)
T ss_pred HHHHHHHHHHHHhhcCCCCeEEecCcCCC----CCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 55555443322122245678999999865 467789999998877542 246798889999999999999998888
Q ss_pred CCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCce
Q 014603 106 YKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185 (422)
Q Consensus 106 ~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 185 (422)
.++++++|++|+|++++++.++++++++||.|++++|+|..+...++..|.+++.++.+++ ++++|++++++.++++++
T Consensus 92 ~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~ 170 (394)
T PRK06836 92 TPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALEAAITPKTK 170 (394)
T ss_pred CCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHHhhcCcCce
Confidence 7889999999999999999999999999999999999999999999999999999998643 467999999999988899
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHH------cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKK------LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~------~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~ 259 (422)
++++++|+||||.++|.+++++|+++|++ ||++||+||+|..+.+++.....+.. ..+++++++|+||.|++
T Consensus 171 ~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~ 248 (394)
T PRK06836 171 AVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK--YYDNSIVVYSFSKSLSL 248 (394)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH--ccCcEEEEecchhhccC
Confidence 99999999999999999999999999999 89999999999998876543333222 23578999999999999
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
||+|+||+++++.. .....+...+...... ...++.+.|.++..++++. ..++.++++++.+.+.|+++
T Consensus 249 pGlRiG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~~~~~~~r~~l~~~L~~~- 319 (394)
T PRK06836 249 PGERIGYIAVNPEM--EDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT------VDVSIYKRNRDLLYDGLTEL- 319 (394)
T ss_pred cceeeEEEecCHHH--hhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHhC-
Confidence 99999999986311 0000111222111111 1256678889988888752 12466788889999999988
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
++. +..|.+|+|+|++++.. +..+++.. +.++||.|.||..|+..+++||+++.+++++++++++|++++++
T Consensus 320 g~~-~~~~~gg~~~~~~~~~~------~~~~~~~~-l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 320 GFE-CVKPQGAFYLFPKSPEE------DDVAFCEK-AKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKE 391 (394)
T ss_pred CCE-eecCCceEEEEEeCCCC------CHHHHHHH-HHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 676 45788899999988642 46667654 56789999999998878999999998899999999999999988
Q ss_pred hc
Q 014603 418 HA 419 (422)
Q Consensus 418 ~~ 419 (422)
|.
T Consensus 392 ~~ 393 (394)
T PRK06836 392 YK 393 (394)
T ss_pred hc
Confidence 74
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=350.40 Aligned_cols=344 Identities=18% Similarity=0.234 Sum_probs=273.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC----CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA----RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
.+.++++|+.|++. +++++.+.+++.+.+.+. ....|.+..|.+++|+++++++.+. .+++++|++|+|
T Consensus 31 ~~~~~i~l~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~G 103 (402)
T TIGR03542 31 PSADIIRLGIGDTT----QPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDG 103 (402)
T ss_pred CCCCeEEcCCCCCC----CCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCC
Confidence 46789999999865 577889999998877652 2356988899999999999986432 378899999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCC-----------eEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 119 CTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHL-----------EVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 119 ~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
+++++..+. .++.+||+|++++|+|..+...++..|. +++.++.+.++++..|.+. .++++++
T Consensus 104 a~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i 177 (402)
T TIGR03542 104 AKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDII 177 (402)
T ss_pred cHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc-----cCCceEE
Confidence 999999864 5568999999999999999999999999 8888887554455555321 1468999
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
++++||||||.+++.+++++|+++|+++|++||+||+|..+.+++..+.++..+.. .+++++++||||.|++||+|+||
T Consensus 178 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~ 257 (402)
T TIGR03542 178 YLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGW 257 (402)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEE
Confidence 99999999999999999999999999999999999999998776533334444433 35789999999999999999999
Q ss_pred EEeeCCCCcccchhHH--------HHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 267 LVTSDPNGILQDSGIV--------DSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
+++++ +++ ..+.... ....+++.+.|.++..++......+..+.++.++++++.+.+.|++.
T Consensus 258 ~i~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~- 328 (402)
T TIGR03542 258 TVVPK--------ELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA- 328 (402)
T ss_pred EEecH--------HHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 99963 343 2221111 22335778899988888875333456667788899999999999987
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
++. +..|.+|+|+|++++.. .++.+++..+++++||.+.||..|+. .+++||+++.+++++++++++|+++
T Consensus 329 ~~~-~~~~~~~~f~~v~l~~~-----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 329 GFK-VYGGEHAPYLWVKTPEG-----ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEA 401 (402)
T ss_pred Cce-ecCCCceeEEEEECCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence 666 44667899999999742 24667888888788999999998865 5799999887889999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=354.45 Aligned_cols=371 Identities=21% Similarity=0.233 Sum_probs=284.7
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
|+...+.+.++.+...+... ..+++|||+.|.|.. ...+|..+.+.+++.+.........|++..|.+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia 79 (396)
T PRK09257 4 HLEAAPADPILGLMEAFRAD----PRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQ 79 (396)
T ss_pred cCCCCCCChHHHHHHHHhhC----CCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHH
Confidence 45667777787777655433 245789999997531 1112224788899888765544558999999999999999
Q ss_pred HHHhhcCCCCCCCCCE--EEecCHHHHHHHHHHHh--cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 98 DYLNRDLPYKLSPDDV--YLTLGCTQAIEVILTVL--ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++.+..+..+++++| ++|+|+++|+..+++++ +++||+|++++|+|+.+...++..|.+++.++....+++++|+
T Consensus 80 ~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~ 159 (396)
T PRK09257 80 ELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDF 159 (396)
T ss_pred HHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCH
Confidence 9997765544678887 99999999999998766 5899999999999999999999999999999874344578999
Q ss_pred HHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCCCccccC-CCCCeE
Q 014603 174 DAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGN-TPFVPMGVFG-SIVPVL 248 (422)
Q Consensus 174 ~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~-~~~~~i 248 (422)
+.+++.+. +++.++++++||||||.+++.+++++|+++|++||++||+||+|..+.++. ....++..+. ..++++
T Consensus 160 ~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi 239 (396)
T PRK09257 160 DAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELL 239 (396)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEE
Confidence 99998765 235566678999999999999999999999999999999999999887642 1122333332 235799
Q ss_pred EEecCccccCCCCceeEEEEe--eCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-----HHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVT--SDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKITD 320 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~ 320 (422)
+++||||.|+++|+|+||+++ +++. .. .++..++.... ....+++.+.|.++..+|.... +.++++.++
T Consensus 240 ~i~SfSK~~~~~GlRiG~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~ 316 (396)
T PRK09257 240 VASSFSKNFGLYGERVGALSVVAEDAE-EA--DRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRE 316 (396)
T ss_pred EEEEcCCcCccccccceeEEEEeCCHH-HH--HHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999989999999984 2210 00 12334443333 2334567888999999987632 456777889
Q ss_pred HHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe
Q 014603 321 ILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF 397 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 397 (422)
.++++++.+.+.|+++. ++. +..|.+|+|+|++++ .+++.++++++||.+.|. + ||++
T Consensus 317 ~~~~rr~~l~~~L~~~~~~~~~~-~~~p~gg~~~w~~l~----------~~~~~~l~~~~~V~~~p~------~--ri~~ 377 (396)
T PRK09257 317 RIKAMRQLLVEALKAKGPSRDFD-FIARQRGMFSYSGLT----------PEQVDRLREEFGVYAVGS------G--RINV 377 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcc-cccccceEEEecCCC----------HHHHHHHHHcCCEEEcCC------C--eEEE
Confidence 99999999999999872 355 447899999999874 245677888899999873 2 9999
Q ss_pred c-cChHHHHHHHHHHHHHH
Q 014603 398 A-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 398 ~-~~~~~l~~~~~~l~~~~ 415 (422)
+ .+++++++++++|++++
T Consensus 378 ~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 378 AGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred eeCCHHHHHHHHHHHHhhC
Confidence 8 79999999999998753
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=352.00 Aligned_cols=375 Identities=19% Similarity=0.299 Sum_probs=284.7
Q ss_pred cHHHHHHHHHhhhhccCCCC-------ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH
Q 014603 27 TVRGVLNSLLENLNKNDTRP-------LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADY 99 (422)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~-------~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 99 (422)
...++.+++..++..+.+.+ +|+|+.|.|+ +++++.+.+++ +.+.. ..|+++.|++++|++|+++
T Consensus 75 ~~~g~~~r~~~~~~~~~~~~g~~~l~~~i~l~~g~p~----~~~~~~v~e~~-~~~~~---~~Y~~~~g~~~lreaia~~ 146 (527)
T PRK09275 75 QKEGIEERFEAFLEEHKDVPGIDFLRDAVSYVRDQLG----FDADEFVYELV-DGIIG---DNYPVPDRMLKHTEKIVKD 146 (527)
T ss_pred ccccHHHHHHHHHHhCCCCchHHHHHHHHhhcCCCCC----CCCCHHHHHHH-HHHhc---CCCCCCCCCHHHHHHHHHH
Confidence 34556777777776655433 6999999966 68888888844 44433 2599999999999999985
Q ss_pred Hhh-cCCCCC-C--CCCEEEecCHHHHHHHHHHH-----hcCCCCEEEecCCCccchHHHHhhCCCeE--EEeeccCCCC
Q 014603 100 LNR-DLPYKL-S--PDDVYLTLGCTQAIEVILTV-----LARPGANILLPRPGFPYYEARATHSHLEV--RHFDLLPAKG 168 (422)
Q Consensus 100 l~~-~~~~~~-~--~~~i~~~~g~~~a~~~~~~~-----l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~ 168 (422)
+.+ ..+... . .++|++|+|+++++..++.+ +++|||+|++++|+|+.|...++..|.++ +.++.+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~ 226 (527)
T PRK09275 147 YLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENE 226 (527)
T ss_pred HHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccC
Confidence 543 332222 2 34899999999999999886 68999999999999999999888776555 4444445567
Q ss_pred cccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCCCccccCCCCC
Q 014603 169 WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK--LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246 (422)
Q Consensus 169 ~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (422)
|.+|++.++++++++++++++++|+||||.+++.+++++|+++|++ +|++||+||+|..+.+. +.++... ..++
T Consensus 227 f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~-~~~~ 302 (527)
T PRK09275 227 WQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAV-LPYN 302 (527)
T ss_pred CCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHh-CCCC
Confidence 8999999999888899999999999999999999999999999965 49999999999987642 2232222 2257
Q ss_pred eEEEecCccccCCCCceeEEEEeeCCCCcccchhHH----------------------------HHH----Hhhh-hhcc
Q 014603 247 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV----------------------------DSI----KSFL-NISS 293 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~----------------------------~~~----~~~~-~~~~ 293 (422)
++++.||||.|+++|+|+||+++++.+ ++ .+++ +++ .... +.+.
T Consensus 303 ~I~v~SfSK~f~mtG~RlG~i~~~~~~-v~--~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~ 379 (527)
T PRK09275 303 TILVYSFSKYFGATGWRLGVIALHEDN-VF--DKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTA 379 (527)
T ss_pred EEEEeehhhhccCcHhHHhhhhcCchh-HH--HHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999987421 11 1122 222 2222 3345
Q ss_pred CcchHHHHHH-----HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc--------
Q 014603 294 DPATFIQGAV-----PQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-------- 360 (422)
Q Consensus 294 ~~~~~~~~a~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-------- 360 (422)
+.+.+.|.++ .++++. .+.+.++.++.++++++.+.+.|. . .+. ...|.+++|+|+.++....
T Consensus 380 ~~s~p~Q~a~al~~~~all~~-~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~-~~~p~g~fY~~~di~~~~~~~~g~~f~ 455 (527)
T PRK09275 380 GLSTPQQVQMALFSLFALLDE-EDAYKKAMKDIIRRRYKALYEGLG-L-PEP-EDPNNAAYYTLIDLEEWAEKNYGKEFA 455 (527)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHcC-C-CCc-CCCCCeeEEEEEEhHHhhhhccCchhh
Confidence 7777788763 234543 357888899999999999988882 2 222 2368899999998864210
Q ss_pred ---cCCCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEEec-cChHHHHHHHHHHHHHHHHhcc
Q 014603 361 ---EGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFA-VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 361 ---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~-~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
....++.+++.+|+++.||.+.||..|+. ++++|||++ .+++++.+++++|+++++++.+
T Consensus 456 ~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 456 DYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred hhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 01125788899999999999999999985 578999999 6889999999999999988754
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=354.28 Aligned_cols=338 Identities=17% Similarity=0.210 Sum_probs=278.6
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
..+++|+.|.|. .+++|.+.+++.+.... ...|++..|.+++|+++++++++..+ .+++|++|+|+++++.
T Consensus 85 ~~~i~L~~g~p~----~~~~p~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~ 155 (431)
T PRK15481 85 TPLHDLAGGNPD----PQRLPDLSRYFARLSRT--PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIE 155 (431)
T ss_pred chhhhhhcCCCC----hhHhHHHHHHHHHhhhh--hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHH
Confidence 356888888755 34556677777775433 35799989999999999999975322 3569999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEe-CCCCCcccccCHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~-~p~nptG~~~~~~ 203 (422)
.++++++++||.|++++|+|..+...++..|++++.++++. + ++|++.+++.+++++++++++ +||||||.+++.+
T Consensus 156 ~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~--g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~ 232 (431)
T PRK15481 156 RLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA-E--GMQPEKLERALAQGARAVILTPRAHNPTGCSLSAR 232 (431)
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC-C--CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHH
Confidence 99999999999999999999999999999999999998853 2 489999999887788888887 9999999999999
Q ss_pred HHHHHHHHHHHc-CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 204 HLQKIAETAKKL-GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 204 ~l~~i~~~~~~~-~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
++++|+++|+++ +++||+||+|..+.+.+. ...+. . ..+++++++||||.|+ ||+|+||++++ ++++
T Consensus 233 ~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~~-~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~--------~~~~ 300 (431)
T PRK15481 233 RAAALRNLLARYPQVLVIIDDHFALLSSSPY-HSVIP-Q-TTQRWALIRSVSKALG-PDLRLAFVASD--------SATS 300 (431)
T ss_pred HHHHHHHHHHhcCCceEEecCchhhhccCCC-CCCCc-C-CCCCEEEEeeeccccC-CCceeEEEeCC--------HHHH
Confidence 999999999999 999999999998876432 11221 1 2357999999999998 99999999986 4677
Q ss_pred HHHHhhhhh-ccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc
Q 014603 283 DSIKSFLNI-SSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360 (422)
Q Consensus 283 ~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (422)
+++...... ..+.+.+.|.++..+|++.. +.++++.++.++++++.+.+.|++. ++. +..|.+|+|+|++++.
T Consensus 301 ~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~-~~~p~gg~f~~~~l~~--- 375 (431)
T PRK15481 301 ARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIA-IPSPGDGLNLWLPLDT--- 375 (431)
T ss_pred HHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cccCCCeEEEEEECCC---
Confidence 777655432 24578899999999998743 5678889999999999999999987 666 4478999999999974
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec-cChHHHHHHHHHHHHHHH
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA-VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~-~~~~~l~~~~~~l~~~~~ 416 (422)
++.++...+ .++||.+.||..|+. .+++|||++ .+++++++++++|++++.
T Consensus 376 ----~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 376 ----DSQATALTL-AKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred ----CHHHHHHHH-HHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 355666665 467999999998864 368999999 578999999999998874
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=351.04 Aligned_cols=369 Identities=17% Similarity=0.189 Sum_probs=280.7
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
|+...+.+.++++.+.+++. .++++|||+.|.|.+ .+...+.+.+.+++.+........+|++..|.+++|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia 82 (404)
T PTZ00376 7 QVPLGPPDPILGLAAAFKAD----PSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQ 82 (404)
T ss_pred cCCcCCCChHHHHHHHHhhc----CCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHH
Confidence 55566777788877766432 356889999998531 1111223345555444333334468999999999999999
Q ss_pred HHHhhcCCCCCCCCCEE--EecCHHHHHHHHHH---HhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 98 DYLNRDLPYKLSPDDVY--LTLGCTQAIEVILT---VLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~--~~~g~~~a~~~~~~---~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
+++.+..+..+++++|+ .|.|+++++..++. +++++||+|++++|+|+.+...++..|.+++.+++.+++++++|
T Consensus 83 ~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d 162 (404)
T PTZ00376 83 KLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLD 162 (404)
T ss_pred HHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcC
Confidence 99976555557888998 48999999988865 66899999999999999999999999999999998555568899
Q ss_pred HHHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCCCccccC-CCCC
Q 014603 173 LDAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT--PFVPMGVFG-SIVP 246 (422)
Q Consensus 173 ~~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~~-~~~~ 246 (422)
++.+++.+. ++++++++++||||||.+++.+++++|+++|++||++||+||+|..+.+++. ...++..+. ..++
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
T PTZ00376 163 FDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE 242 (404)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCc
Confidence 999998874 3456777899999999999999999999999999999999999999887541 111222222 2247
Q ss_pred eEEEecCccccCCCCceeEEEEe--eCCCCcccchhHHH----HHHhhh-hhccCcchHHHHHHHHHHhhch--HH---H
Q 014603 247 VLTLGSISKRWIVPGWRLGWLVT--SDPNGILQDSGIVD----SIKSFL-NISSDPATFIQGAVPQILEKTE--EE---F 314 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~~--~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~a~~~~l~~~~--~~---~ 314 (422)
+++++||||.|+++|+|+||+++ .+ +++.+ .+.... ....+++.+.|.++..+|++.. +. .
T Consensus 243 vi~i~SfSK~~~~~GlRvG~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 315 (404)
T PTZ00376 243 FLVAQSFSKNMGLYGERIGALHIVCAN-------KEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSE 315 (404)
T ss_pred EEEEEeCCCcccccccccceEEEEeCC-------HHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999842 21 34433 333322 2233557789999999997632 22 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCC
Q 014603 315 FSKITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD 391 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 391 (422)
+++.+++++++++.+.+.|+++. ++. ...|.+|+|+|++++ .+++.+|++++||.+.||.
T Consensus 316 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~p~gg~f~~~~~~----------~~~~~~L~~~~~v~v~p~~------ 378 (404)
T PTZ00376 316 LKEMSGRIQNMRQLLYDELKALGSPGDWE-HIINQIGMFSFTGLT----------KEQVERLIEKYHIYLLDNG------ 378 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccc-ccccCceEEEecCCC----------HHHHHHHHHhCCEeecCCC------
Confidence 55667789999999999999872 234 336889999998773 3677888888899999972
Q ss_pred eEEEEec-cChHHHHHHHHHHHHHHHH
Q 014603 392 WLRITFA-VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 392 ~iRis~~-~~~~~l~~~~~~l~~~~~~ 417 (422)
||+++ .+.+++++++++|++++..
T Consensus 379 --Ris~~~~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 379 --RISVAGLTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred --eEEEeccCHHhHHHHHHHHHHHHhc
Confidence 99998 8999999999999998753
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=342.14 Aligned_cols=354 Identities=19% Similarity=0.299 Sum_probs=280.2
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
++++|+.+.+...+....... ...+.++++|+.|.|. .+.++.+++++.+.... ..|++..|.+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~~---~~Y~~~~G~~~lr~ 69 (364)
T PRK07865 2 PVSARLPDFPWDTLAPAKATA-----AAHPDGIVDLSVGTPV----DPVPPVIQEALAAAADA---PGYPTTAGTPELRE 69 (364)
T ss_pred CccccCCCccHHHHHHHHHHH-----HhcCCCEEEcCCCCCC----CCCCHHHHHHHHHHHhh---CCCCCccCCHHHHH
Confidence 456677776644444432211 1145678999999865 45578888888765432 47998889999999
Q ss_pred HHHHHHhhcCCCC-CCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 95 AIADYLNRDLPYK-LSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 95 ~ia~~l~~~~~~~-~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
++++++.+.+|+. +++++|++|+|+++++..++..+ +++||.|++++|+|+.+...++..|.+++.++ +
T Consensus 70 ~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~---------~ 140 (364)
T PRK07865 70 AIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD---------S 140 (364)
T ss_pred HHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecC---------C
Confidence 9999999888876 89999999999999999988888 79999999999999999999999998887663 1
Q ss_pred HHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc---CCCCCeEE
Q 014603 173 LDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF---GSIVPVLT 249 (422)
Q Consensus 173 ~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~---~~~~~~i~ 249 (422)
++.++ .++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++.....+... ...+++++
T Consensus 141 ~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 217 (364)
T PRK07865 141 LTELG---PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLA 217 (364)
T ss_pred hhhCC---cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEE
Confidence 22322 2567899999999999999999999999999999999999999999887765322211110 12357999
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 328 (422)
++||||.|+++|+|+||++++ +++++++..... ...+++.+.|.++..+|+. ..++++.++.++++++.
T Consensus 218 ~~S~SK~~~~~GlRiG~i~~~--------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~ 287 (364)
T PRK07865 218 VHSLSKQSNLAGYRAGFVAGD--------PALVAELLEVRKHAGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAV 287 (364)
T ss_pred EeechhccCCCceeeEEEecC--------HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 567787776553 3346678899999888875 56778888899999999
Q ss_pred HHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHH
Q 014603 329 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALED 406 (422)
Q Consensus 329 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~ 406 (422)
+.+.|++. ++. +..|.+|+|+|+.++. +..++... ++++||.+.||..|+. .+++||+++.+++++++
T Consensus 288 l~~~L~~~-g~~-~~~~~~~~~~~~~~~~-------~~~~~~~~-l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~ 357 (364)
T PRK07865 288 LRPALEAA-GFR-VDHSEAGLYLWATRGE-------DCWDTVAW-LAERGILVAPGDFYGPAGAQHVRVALTATDERIAA 357 (364)
T ss_pred HHHHHHHc-CCc-ccCCCccEEEEEeCCC-------CHHHHHHH-HHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHH
Confidence 99999987 666 4468889999998742 34555554 4677999999988763 57999999878899999
Q ss_pred HHHHHH
Q 014603 407 GLGRMK 412 (422)
Q Consensus 407 ~~~~l~ 412 (422)
++++|+
T Consensus 358 ~~~~l~ 363 (364)
T PRK07865 358 AVERLA 363 (364)
T ss_pred HHHHhh
Confidence 999885
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=340.23 Aligned_cols=350 Identities=19% Similarity=0.305 Sum_probs=287.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++.++|+|+.+.+. +++++.+.+++.+.+.......|++..|.+++|+++++++ ++++++|++|+|++++
T Consensus 26 ~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l------~~~~~~v~~~~g~t~a 95 (380)
T PRK06225 26 KDKEMIWMGQNTNH----LGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL------GLDDDEALITAGATES 95 (380)
T ss_pred hcCCeEEccCCCCC----CCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc------CCCCCcEEEeCCHHHH
Confidence 35679999998855 6788999999999987655668988889999999999998 5678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC-CCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccC
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~ 201 (422)
+..++++++.+||+|++++|+|..+...++..|.+++.++++. .+++.+|++.+++.++++++++++++|+||||.+++
T Consensus 96 l~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~ 175 (380)
T PRK06225 96 LYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYT 175 (380)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCC
Confidence 9999999999999999999999988888889999999888743 345789999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.+++++|+++|+++|+++|+||+|..+..+ .. ....+. .++++++.||||.|+++|+|+||++++ +++
T Consensus 176 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~--~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i~~~--------~~l 243 (380)
T PRK06225 176 EEEIKEFAEIARDNDAFLLHDCTYRDFARE-HT--LAAEYA-PEHTVTSYSFSKIFGMAGLRIGAVVAT--------PDL 243 (380)
T ss_pred HHHHHHHHHHHHHCCcEEEEehhHHHHhcc-CC--chhhcC-CCCEEEEeechhhcCCccceeEEEecC--------HHH
Confidence 999999999999999999999999875432 11 112222 256899999999998899999999986 467
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++.+........+.+.+.|.++..++.. ...++++.++.++++++.+.+.|++++++.+...|.+|.|+|+.++...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-- 320 (380)
T PRK06225 244 IEVVKSIVINDLGTNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG-- 320 (380)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc--
Confidence 7777665433446677888888888864 2466777777788888889999998767543335677889999886421
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.+..++...+. ++||.+.||..|+. .+++|++++.+++++++++++|++++.+++.
T Consensus 321 --~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 321 --IDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred --CCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence 14667777765 67999999976643 4689999998899999999999999988764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=351.22 Aligned_cols=349 Identities=30% Similarity=0.537 Sum_probs=293.2
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHH-HhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVH-SVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAI 123 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~ 123 (422)
++|||+.|++......++++++.+++.+ .........|++..|.+++|+++++++++..+..++++ +|++++|+++++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 5799999997742222355666666655 33334567999999999999999999997677778888 999999999999
Q ss_pred HHHHHHh-cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCc
Q 014603 124 EVILTVL-ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPC 196 (422)
Q Consensus 124 ~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~npt 196 (422)
..++..+ .++||+|+++.|+|+.+...++..|.+++.+++..++++.+|++.|++.+++ +++++++++|+|||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9999999 7899999999999999999999999999999987778889999999998876 57899999999999
Q ss_pred ccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC-ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCc
Q 014603 197 GNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275 (422)
Q Consensus 197 G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~ 275 (422)
|.+++.+++++|+++|+++|++||+||+|..+.++.....+ ...+....+++++.|+||.|+++|+|+||++++
T Consensus 162 G~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~----- 236 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAP----- 236 (363)
T ss_dssp TBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEE-----
T ss_pred ccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccch-----
Confidence 99999999999999999999999999999998886543322 344455556899999999999999999999996
Q ss_pred ccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEE
Q 014603 276 LQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMV 353 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~ 353 (422)
+++++.+......... +.+.+.++..++.+.. ..++++.+++++++++.+.+.|++. ++. +..+.+|+|+|+
T Consensus 237 ---~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~-~~~~~~~~~~~~ 310 (363)
T PF00155_consen 237 ---PELIERLRRFQRSGLS-SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GIT-VLPPEAGFFLWV 310 (363)
T ss_dssp ---HHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE-EEHHSBSSEEEE
T ss_pred ---hhhhhhhhhccccccc-cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhh-eeeccCccEEEE
Confidence 5788888877755434 7788888888887644 2388999999999999999999988 777 446678999999
Q ss_pred ecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-ccChHHHHHHHHHH
Q 014603 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AVEPSALEDGLGRM 411 (422)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~~~~~~l~~~~~~l 411 (422)
.++.. ++.++..+|+++.||.+.||..|+.++++|+++ ..+++++++++++|
T Consensus 311 ~~~~~------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 311 RLDPN------DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp EESHH------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred Ecccc------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence 88753 357888888877799999999999999999999 58999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=364.45 Aligned_cols=379 Identities=16% Similarity=0.256 Sum_probs=300.2
Q ss_pred HHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 18 EELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
.++.+++.+.+..+.+ ..-.....++.++|+|+.|++. +++|+.+++++.+.+... .+ ..+.++++++++
T Consensus 671 ~~~~~~~~~~~~~l~~-~~~~~~~~~g~~vI~LsinE~d----~ppPp~V~eAi~eal~~~---~~--s~g~pdlr~aLa 740 (1082)
T PLN02672 671 SKFIGFSSSARSALKE-AELSVSGSQESSLIHMDVDESF----LPVPSAVKASIFESFVRQ---NI--SESETDPRPSIL 740 (1082)
T ss_pred HhhhCCCchhHHHHHh-cccCCcccCCCCEEEEeCCCCC----CCCCHHHHHHHHHHHhhc---CC--CCCChHHHHHHH
Confidence 4677888777777764 3334444567899999999965 789999999999877542 12 234678999999
Q ss_pred HHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHH
Q 014603 98 DYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 98 ~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 176 (422)
+++.+.+|+..++ ++|++++|+++++..++++++++||.|+++.|+|+.|...++..|.+++.+++++++++.+|++.+
T Consensus 741 ~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~L 820 (1082)
T PLN02672 741 QFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTL 820 (1082)
T ss_pred HHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHH
Confidence 9999988887765 589999999999999999999999999999999999999999999999999987667889999999
Q ss_pred HHhhcC-CceEEEEeCCC-CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC--CCcc----ccCC---CC
Q 014603 177 EALADE-NTVALVIINPG-NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF--VPMG----VFGS---IV 245 (422)
Q Consensus 177 ~~~~~~-~~~~i~i~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~--~~~~----~~~~---~~ 245 (422)
++.+++ +.+++++++|+ ||||.+++.+++++|+++|++||++||+||+|+.+.|++... .++. .+.. ..
T Consensus 821 e~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~ 900 (1082)
T PLN02672 821 ASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSF 900 (1082)
T ss_pred HHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCc
Confidence 998865 45688999997 999999999999999999999999999999999888865421 1111 1111 23
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHh-----hc-hHHHHHHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILE-----KT-EEEFFSKIT 319 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----~~-~~~~~~~~~ 319 (422)
++++++||||.|+++|+|+||+++++ +++++.+...... ..+....+.++..++. .. ...++.+.+
T Consensus 901 nVIvL~SfSKkf~lpGLRIGylIap~-------~eLi~~l~~~~~~-s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r 972 (1082)
T PLN02672 901 AVALLGGLSTELLSGGHEFGFLALND-------SVLIDAFHSAPGL-SRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQK 972 (1082)
T ss_pred eEEEEeCcHHhhccHHHHheeEEeCC-------HHHHHHHHHhhhh-cCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 68999999999999999999999864 3477777665432 2333344544444432 11 135677788
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc-----cc------C-CCCHHHHHHHHHHhcCeEEecCCCC
Q 014603 320 DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-----LE------G-INSDMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~------~-~~~~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
+.++++++.+.+.|+++ ++. +..|.+|+|+|+.++... .. + ..++.++...++++.||.+.||..|
T Consensus 973 ~~Lk~rRd~L~e~L~~~-Gi~-v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~F 1050 (1082)
T PLN02672 973 KILKSRAERLKETLEAC-GWD-VLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWT 1050 (1082)
T ss_pred HHHHHHHHHHHHHHHHC-CCe-EecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCccc
Confidence 88999999999999998 777 558899999999764210 00 0 1256788888888889999999988
Q ss_pred CCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 388 GLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 388 ~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
+.++++||+++.+++++++++++|+++.+
T Consensus 1051 G~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1051 GIPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999998664
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=343.63 Aligned_cols=335 Identities=22% Similarity=0.369 Sum_probs=266.9
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCC----CCC----------------------CCcHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAF----PSF----------------------RTASVAV 68 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~----~~~----------------------~~~~~v~ 68 (422)
.++.|+.+++.+.++.+.....+. +.++.++|+|++|+|+.. ..+ .+++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~--~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~ 87 (407)
T PLN02368 10 SLNENVKKCQYAVRGELYLRASEL--QKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIA 87 (407)
T ss_pred hcCHHHHhhhhhcCCHHHHHHHHH--HHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHH
Confidence 456788888877777666544433 225789999999998510 001 2455666
Q ss_pred HHHHHHhh-CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCCCEEEecCCCccc
Q 014603 69 DAIVHSVR-SARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPGANILLPRPGFPY 146 (422)
Q Consensus 69 ~a~~~~~~-~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~ 146 (422)
+++..... ......|++..|.++||++|++++.+.+|..+++++|++|+|+++++..++++++ ++||+|++++|+|+.
T Consensus 88 ~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~ 167 (407)
T PLN02368 88 RAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPL 167 (407)
T ss_pred HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCcc
Confidence 66554222 2335689999999999999999999888888899999999999999999999987 799999999999999
Q ss_pred hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEE
Q 014603 147 YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220 (422)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li 220 (422)
|...++..|.+++.++++.+++|.+|++.+++.+++ +++++++++|+||||.+++.+++++|+++|++||++||
T Consensus 168 y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II 247 (407)
T PLN02368 168 YSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLL 247 (407)
T ss_pred HHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999987767789999999998763 67889999999999999999999999999999999999
Q ss_pred EcccccccccCCC-CCCCccc----cC----CCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhhhh
Q 014603 221 ADEVYDHLAFGNT-PFVPMGV----FG----SIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN 290 (422)
Q Consensus 221 ~D~~~~~~~~~~~-~~~~~~~----~~----~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (422)
+||+|..+.|++. .+.++.. +. ..+++++++||||+| +++|+|+||+++.+. .+++++.+.....
T Consensus 248 ~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~-----~~~li~~~~~~~~ 322 (407)
T PLN02368 248 GDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI-----PPKTVEEIYKVAS 322 (407)
T ss_pred EEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCC-----CHHHHHHHHHHhc
Confidence 9999999998764 2333222 11 134799999999998 799999999985210 1467787777643
Q ss_pred hccCcchHHHHHHHHHHhhch------HHHH---HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc
Q 014603 291 ISSDPATFIQGAVPQILEKTE------EEFF---SKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 291 ~~~~~~~~~~~a~~~~l~~~~------~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
...+++.++|.++.++|+... +.+. ++..+.++++++.+.+.|+++|++. +..|++++|+|++++-
T Consensus 323 ~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~-~~~P~Gafy~~~~i~l 397 (407)
T PLN02368 323 IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVV-CNFTEGAMYSFPQIKL 397 (407)
T ss_pred ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-eCCCCeeeEeccCCCC
Confidence 345678899999999997431 1233 4567889999999999999998988 4489999999987654
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=340.16 Aligned_cols=332 Identities=19% Similarity=0.291 Sum_probs=273.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++.++|+|+.|.+. +++++.+++++.+.+.. .+.|+ ..|.+++|+++++++ ++++++|++|+|++++
T Consensus 27 ~~~~~i~l~~nen~----~~~~~~v~~a~~~~~~~--~~~Yp-~~g~~~Lr~aia~~~------~~~~~~I~vt~Gs~e~ 93 (366)
T PRK01533 27 GDHSFVKLASNENP----FGCSPRVLDELQKSWLD--HALYP-DGGATTLRQTIANKL------HVKMEQVLCGSGLDEV 93 (366)
T ss_pred CCCceEEeCCCCCC----CCCCHHHHHHHHHHHHh--cCcCC-CCCHHHHHHHHHHHh------CCCcceEEECCCHHHH
Confidence 45688999999955 78899999999887654 23565 568899999999998 5789999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..++++++++||+|++++|+|..|...++..|.+++.++.+ ++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 94 i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~ 170 (366)
T PRK01533 94 IQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVND 170 (366)
T ss_pred HHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCH
Confidence 999999999999999999999999999999999999999874 34689999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+++|++++ ++|+||+|..+.+.+.....+..+...+++++++||||.|+++|+|+||++++ ++++
T Consensus 171 ~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~--------~~~~ 241 (366)
T PRK01533 171 RKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH--------EELI 241 (366)
T ss_pred HHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC--------HHHH
Confidence 99999999998866 57779999877654322222333444568999999999999999999999985 5788
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+..... ..+.+.++|.++.++|++ ..+.++.++..+++++.+.+.++.+ ++. + .+..|+|+|++++
T Consensus 242 ~~l~~~~~-~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~r~~~~~~l~~~-g~~-~-~~~~~nf~~~~~~------ 309 (366)
T PRK01533 242 EKLNVVRL-PFNVSSLAQKAATIAFGD--DEFIEEIVRVNTEGLRQYESFCKEN-EIP-F-YQSQTNFIFLPVE------ 309 (366)
T ss_pred HHHHHhcC-CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhC-CCc-c-CCCcCcEEEEeCC------
Confidence 88876653 357888999999999975 5778888888888888898888887 666 4 3446889999885
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+..++...+ .++||.|++ | .+++||+++.. ++.++++++|+++++..+.
T Consensus 310 --~~~~~~~~l-~~~GI~Vr~---~--~~~iRis~~~~-~~~~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 310 --NGGEIYEAC-AHAGFIIRP---F--PNGVRITVGTR-EQNEGVISVLQQHFENKKR 358 (366)
T ss_pred --CHHHHHHHH-HHCCcEEcc---C--CCceEEeCCCH-HHHHHHHHHHHHHHHhccc
Confidence 245666655 567999997 3 57899998754 6888899998888766543
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=337.52 Aligned_cols=329 Identities=22% Similarity=0.353 Sum_probs=272.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+.++|+|+.|.+. ++++|.+.+++.+.+.. ...|++ .+.++||+++++++ ++++++|++|+|++++
T Consensus 28 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~Y~~-~~~~~lr~~ia~~~------~~~~~~I~it~G~~~a 94 (357)
T PRK14809 28 DPDDLVKLSSNENP----HGPSPAAVEAIREAAER--VHSYPK-ASHADLTAALADRW------DVSPEQVWLANGGDGA 94 (357)
T ss_pred CccceeEecCCCCC----CCCCHHHHHHHHHHHhh--hhcCCC-CCHHHHHHHHHHHh------CCCcceEEECCCHHHH
Confidence 35689999999855 67788899999887653 457865 67899999999998 5789999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..++++++++||.|++++|+|..+...+...|.+++.+++..++++.++.+.+++.. ++++++++++|+||||.++|.
T Consensus 95 l~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~ 173 (357)
T PRK14809 95 LDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPL 173 (357)
T ss_pred HHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCH
Confidence 9999999999999999999999988888888999999998865566778888877655 357899999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+++|++ +++||+||+|..+.+.+. .+..+...+++++++||||.|+++|+|+||++++ ++++
T Consensus 174 ~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~--------~~~~ 241 (357)
T PRK14809 174 DEVEALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVP--------EEWA 241 (357)
T ss_pred HHHHHHHHhCcc-CcEEEEechhhhccCCch---hHHHHhhCCCEEEEecchhHhcCcchhheeeecC--------HHHH
Confidence 999999999975 789999999998775432 1222334568999999999999999999999986 4677
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+++..... ....+.+.|.++..+|.+ +.++++.++.++++++.+.+.|+.. . .|.+|+|+|++++
T Consensus 242 ~~~~~~~~-~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-----~-~~~~g~f~~~~~~------ 306 (357)
T PRK14809 242 DAYARVNT-PFAASELACRAGLAALDD--DEHVERTVETARWAREYIREELDAP-----T-WESAGNFVLAEVG------ 306 (357)
T ss_pred HHHHHhCC-CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHhcCc-----c-CCCCCCEEEEECC------
Confidence 77776543 345678888888888865 5788888889999999999888653 1 3567899999874
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
+..++...+ +++||.|.||..|+..+++||+++. .+++++++++|+++++
T Consensus 307 --~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRls~~~-~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 307 --DASAVAEAA-QERGVIVRDCTSFGLPECIRITCGT-REETERAVEVLNEVLA 356 (357)
T ss_pred --CHHHHHHHH-HHCCEEEEECccCCCCCeEEEecCC-HHHHHHHHHHHHHHhc
Confidence 356666664 6779999999999888999999875 6899999999998874
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=340.31 Aligned_cols=331 Identities=20% Similarity=0.268 Sum_probs=274.6
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..++++|+.|.+. +++++.+.+++.+.+.. . .|.+..|.+++|+++++++ ++++++|++|+|+++++
T Consensus 28 ~~~~i~l~~n~~~----~~~~~~v~~a~~~~~~~--~-~~~p~~g~~~lr~~ia~~~------~~~~~~i~~t~G~~~~l 94 (359)
T PRK03158 28 LEKIVKLASNENP----YGPSPKVKEAIAAHLDE--L-ALYPDGYAPELRTKVAKHL------GVDEEQLLFGAGLDEVI 94 (359)
T ss_pred CCceEEecCCCCC----CCCCHHHHHHHHHHHHH--h-hcCCCCcHHHHHHHHHHHh------CCCHHHEEECCCHHHHH
Confidence 4578999999855 56788999999887754 2 4555578999999999999 56789999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
..++++++++||+|++++|+|+.+...+...|.+++.++.+ ++.+|++.+++.++++++++++++|+||||.+++.+
T Consensus 95 ~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~ 171 (359)
T PRK03158 95 QMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHE 171 (359)
T ss_pred HHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHH
Confidence 99999999999999999999999999899999999999875 356899999988888889999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++.++++.|+ +|++||+||+|..+.+.+.....+...+..+++++++||||.|+++|+|+||++++ +++++
T Consensus 172 ~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~--------~~~~~ 242 (359)
T PRK03158 172 ELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIAS--------EELIE 242 (359)
T ss_pred HHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCC--------HHHHH
Confidence 9999988874 69999999999988765433322233344467999999999999999999999986 56788
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
++...... .+++.++|.++..+|++ ..++++.++.++++++.+.+.|+++ ++. + .|.+|+|+|++++.
T Consensus 243 ~~~~~~~~-~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~-~~~~g~~i~~~~~~------ 310 (359)
T PRK03158 243 KLNIARPP-FNTTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEY-GLF-Y-YPSQTNFIFVDTGR------ 310 (359)
T ss_pred HHHHhcCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCe-e-CCCcCcEEEEECCC------
Confidence 88766543 46788999999999975 4677888888888999999999887 665 3 46668899998752
Q ss_pred CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
++.++...++ ++||.+.||..|+.++++||+++ +.++.++++++|+++
T Consensus 311 -~~~~~~~~l~-~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 311 -DANELFEALL-KKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred -CHHHHHHHHH-HCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 4667777765 56999999999987899999988 467888888888765
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=332.18 Aligned_cols=345 Identities=19% Similarity=0.296 Sum_probs=276.7
Q ss_pred ccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCC
Q 014603 26 ITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLP 105 (422)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~ 105 (422)
..++++++...+.. ..+.++++|+.|+|. .++++.+.+++.+... ...|++..|.+++|+++++++.+.+|
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~~i~l~~~~p~----~~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~~~~~~~ 74 (357)
T TIGR03539 4 FPWDSLAPYKAKAA--SHPDGIVDLSVGTPV----DPVPPLIRAALAAAAD---APGYPQTWGTPELREAIVDWLERRRG 74 (357)
T ss_pred chHHHHHHHHHHhh--hCCCCeEEccCCCCC----CCCCHHHHHHHHHHHh---hCCCCcccCCHHHHHHHHHHHHHhcC
Confidence 44666666554442 246788999999865 4667888888876543 35799889999999999999998888
Q ss_pred CC-CCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC
Q 014603 106 YK-LSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN 183 (422)
Q Consensus 106 ~~-~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 183 (422)
+. +++++|++|+|+++++..++..+ +++||.|++++|+|+.+...++..|.+++.++ +++.+. .++
T Consensus 75 ~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~---~~~ 142 (357)
T TIGR03539 75 VPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD---PVG 142 (357)
T ss_pred CCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC---ccC
Confidence 86 99999999999999999998887 79999999999999999988888898877653 222222 247
Q ss_pred ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccc--c-CCCCCeEEEecCccccCCC
Q 014603 184 TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV--F-GSIVPVLTLGSISKRWIVP 260 (422)
Q Consensus 184 ~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~--~-~~~~~~i~i~s~sK~~~~~ 260 (422)
++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++.....+.. . ...+++++++||||.|+++
T Consensus 143 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~ 222 (357)
T TIGR03539 143 PDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLA 222 (357)
T ss_pred ccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCC
Confidence 889999999999999999999999999999999999999999988776532211111 0 1124689999999999999
Q ss_pred CceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 014603 261 GWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCI 339 (422)
Q Consensus 261 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 339 (422)
|+|+||++++ +++++.+...... ..+++.+.|.++..+|++ ..++.+.++.++++++.+.+.|++. ++
T Consensus 223 G~R~G~~i~~--------~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~-g~ 291 (357)
T TIGR03539 223 GYRAGFVAGD--------PALVAELLTVRKHAGLMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKA-GF 291 (357)
T ss_pred ceeEEEEecC--------HHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 9999999975 4677777665532 346788899999888865 4667778888999999999999986 67
Q ss_pred CCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHH
Q 014603 340 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l 411 (422)
. +..|.+|+|+|+.++. +..++...+ .++||.|.||..|+. ++++|||++.+++++++++++|
T Consensus 292 ~-~~~p~~~~~~~~~~~~-------~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 292 R-IDHSEAGLYLWATRGE-------DAWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred C-CcCCCccEEEEEECCC-------CHHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 6 5578889999998753 355565554 677999999988764 5799999998889999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=338.55 Aligned_cols=377 Identities=20% Similarity=0.304 Sum_probs=277.8
Q ss_pred cHHHHHHHHHhhhhccCCC-------CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH-H
Q 014603 27 TVRGVLNSLLENLNKNDTR-------PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA-D 98 (422)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~-------~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia-~ 98 (422)
...++.+++..++..+.+. ++|+|+.|.|. ++++ ++.+++.+.+.. ..|+++.+..+++++++ +
T Consensus 69 ~~~g~~~r~~~~~~~~~~~~g~~~l~~~i~l~~g~p~----~~~~-~~~~~~~~~~~~---~~Y~~p~g~~~~~e~iv~~ 140 (521)
T TIGR03801 69 QKEGIEERFETFLAENKSQPGAEFLRDIISYVIDQLG----FDPD-AFLYEMCDGIIG---DNYPVPDRMLPHSEKIVHQ 140 (521)
T ss_pred CcchHHHHHHHHHHhCCCCchHHHHHHHHhhcCCCCC----CCCC-HHHHHHHHHhhc---CCCCCCCCCHHHHHHHHHH
Confidence 3455677777766554433 36899999976 5654 444666665533 25876677777777777 5
Q ss_pred HHhhcCCCC-CCCC--CEEEecCHHHHHHHHHHH-----hcCCCCEEEecCCCccchHHHHhhC--CCeEEEeeccCCCC
Q 014603 99 YLNRDLPYK-LSPD--DVYLTLGCTQAIEVILTV-----LARPGANILLPRPGFPYYEARATHS--HLEVRHFDLLPAKG 168 (422)
Q Consensus 99 ~l~~~~~~~-~~~~--~i~~~~g~~~a~~~~~~~-----l~~~gd~Vl~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~ 168 (422)
++.+.++.. ..++ +|++|+|+++|+..++.+ ++.|||+|+++.|+|+.|...+... |..++.++.++.++
T Consensus 141 y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~ 220 (521)
T TIGR03801 141 YLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTE 220 (521)
T ss_pred HHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccc
Confidence 666654433 2333 899999999999999887 6899999999999999999887775 56666666654333
Q ss_pred -----cccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCCCcccc
Q 014603 169 -----WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL--GIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 169 -----~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
|.+|+++++++++++++++++++|+||||.+++.+++++|+++|+++ +++||+||+|..+.+. +.++...
T Consensus 221 ~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~ 297 (521)
T TIGR03801 221 DGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAE 297 (521)
T ss_pred cccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhh
Confidence 88999999998888999999999999999999999999999999986 9999999999987642 2233332
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc------hh--------------------HHHHH----Hhhh-h
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD------SG--------------------IVDSI----KSFL-N 290 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~------~~--------------------~~~~~----~~~~-~ 290 (422)
. .++++++.||||.|+++|+|+||+++++.+ +++. ++ +++++ +... +
T Consensus 298 ~-~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~-v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~ 375 (521)
T TIGR03801 298 L-PYNTIGVYSFSKYFGATGWRLGTIALHKDN-IFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALN 375 (521)
T ss_pred C-CCCEEEEEcchhhccCchhhhhhhhcCchH-HHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHh
Confidence 2 257999999999999999999999986421 1100 00 11111 1111 2
Q ss_pred hccCcchHHHH-----HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc-----
Q 014603 291 ISSDPATFIQG-----AVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL----- 360 (422)
Q Consensus 291 ~~~~~~~~~~~-----a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~----- 360 (422)
.+.+.+.+.|. ++.++++. .+.+.++.++.++++++.+.+.| .+ .+. ...|.+++|+|+.++....
T Consensus 376 ~~~g~s~p~Q~q~al~a~~all~~-~~~y~~~~~~~~~~R~~~l~~~L-g~-~~~-~~~~~g~~Y~~~di~~~~~~~~~~ 451 (521)
T TIGR03801 376 HTAGLSTPQQVQMALFSLFALMDK-ENAYKAETKDICRRREKLLFRGL-GL-PLQ-EDPNDVAYYTLIDLEEWAEKNYGE 451 (521)
T ss_pred ccCCCCcHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhc-CC-CCc-CCCCCeEEEEEeehHHHHHHhcch
Confidence 23455666665 33444543 35788999999999999999888 22 122 2357889999999874210
Q ss_pred ------cCCCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEEec-cChHHHHHHHHHHHHHHHHhcc
Q 014603 361 ------EGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFA-VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 361 ------~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~-~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
....++.+++.+|+++.||.+.||..|+. ++++|||++ .+++++.++.++|++++++|..
T Consensus 452 ~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 452 EFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 01125678999999999999999999986 568999999 6889999999999999988864
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=332.42 Aligned_cols=334 Identities=19% Similarity=0.329 Sum_probs=269.9
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..+++||+.|.+. +++++.+.+++.+.+.. ...|++. +.+++|+++++++ ++++++|++|+|+++++
T Consensus 18 ~~~~~~l~~~~~~----~~~p~~~~~a~~~~~~~--~~~Y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l 84 (354)
T PRK06358 18 KNMILDFSANINP----LGVPESLKQAITENLDK--LVEYPDP-DYLELRKRIASFE------QLDLENVILGNGATELI 84 (354)
T ss_pred ccceEEecCCCCC----CCCCHHHHHHHHHHHHh--hhcCCCc-cHHHHHHHHHHHh------CCChhhEEECCCHHHHH
Confidence 3457999998754 45678999999887643 4578764 5789999999998 57899999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
..+++++ .+ ++|++++|+|+.+...++..|.+++.++.+.++++.+| +.+.+.+.++++++++++|+||||.+++.+
T Consensus 85 ~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~ 161 (354)
T PRK06358 85 FNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKE 161 (354)
T ss_pred HHHHHHh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHH
Confidence 9999987 44 68999999999999999999999999998766677888 666665666789999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++++|+++|+++|++||+||+|..+.+++.....+..++..+++++++||||.|+++|+|+||+++++ +.+.+
T Consensus 162 ~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~-------~~~~~ 234 (354)
T PRK06358 162 EMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN-------KNLAE 234 (354)
T ss_pred HHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC-------HHHHH
Confidence 99999999999999999999999988766433333344455789999999999999999999999853 35667
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+..... ..+.+.+.|.++..+|++ ..++++.++.++++++.+.+.|++++++. +..|. |.|+|++++.
T Consensus 235 ~~~~~~~-~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~~-g~f~~~~~~~------ 303 (354)
T PRK06358 235 KLLQMRE-PWSINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIK-VYKPS-VNFIFFKLEK------ 303 (354)
T ss_pred HHHHhCC-CCcchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcE-EcCCc-ceEEEEEcCc------
Confidence 7766553 346678899999999964 46778888999999999999999987766 43554 5699998863
Q ss_pred CCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
..++...++ ++||.+.||..|+. .+++||+++.+ ++.+++++.|++++
T Consensus 304 --~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRls~~~~-~~~~~l~~~l~~~~ 353 (354)
T PRK06358 304 --PIDLRKELL-KKGILIRSCSNYRGLDENYYRVAVKSR-EDNKKLLKALEVIL 353 (354)
T ss_pred --hHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 456777665 56999999998853 47899998754 56667777766654
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=334.18 Aligned_cols=336 Identities=21% Similarity=0.314 Sum_probs=270.1
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC-CCCCCCCCCCHHHHHHHHHHHhhcC--CCCCCCCCEEEecCHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR-FNCYSSTVGILPARRAIADYLNRDL--PYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~--~~~~~~~~i~~~~g~~~a 122 (422)
.+++|+.|.+. +++++.+.+++.+.+.... ...|++ .|.++||++|++++++.+ ++.+++++|++|+|++++
T Consensus 29 ~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a 103 (374)
T PRK02610 29 QLDRLDTNEFP----YDLPPDLKQKLAWLYQQGIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL 103 (374)
T ss_pred ceeEecCCCCC----CCCCHHHHHHHHHHHhhcccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence 58999999865 6888999999998776532 356865 689999999999998765 466899999999999999
Q ss_pred HHHHHHHhcCCCC-EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc----CCceEEEEeCCCCCcc
Q 014603 123 IEVILTVLARPGA-NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD----ENTVALVIINPGNPCG 197 (422)
Q Consensus 123 ~~~~~~~l~~~gd-~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~p~nptG 197 (422)
+..++.+++.+|| .|++++|+|..+...++..|.+++.++.+. +++++|++.|++.++ ++++++++++||||||
T Consensus 104 l~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG 182 (374)
T PRK02610 104 IRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG 182 (374)
T ss_pred HHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCC
Confidence 9988888777786 899999999999999999999999998753 457899999998875 4789999999999999
Q ss_pred cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCccc
Q 014603 198 NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ 277 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~ 277 (422)
.+++.+++++|.++| +|++||+||+|..+.+. . .+..+...+++++++||||.|++||+|+||++++
T Consensus 183 ~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~--~--~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~------- 249 (374)
T PRK02610 183 NPLTAAELEWLRSLP--EDILVVIDEAYFEFSQT--T--LVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGH------- 249 (374)
T ss_pred CCCCHHHHHHHHhcc--CCcEEEEeccccccCcc--c--hHHHHhcCCCEEEEEecchhccCcccceeeeecC-------
Confidence 999999999999987 39999999999886532 1 1223333457899999999999999999999985
Q ss_pred chhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc
Q 014603 278 DSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
+++++.+...... .+.+.+.|.++..+++. .+.+.+..+..++ .++.+.+.|+.++++. + .|++|+|+|++++.
T Consensus 250 -~~l~~~l~~~~~~-~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~-~r~~l~~~L~~~~~~~-~-~p~~g~f~~~~l~~ 323 (374)
T PRK02610 250 -PELIAVLEKVRLP-YNLPSFSQLAAQLALEH-RQELLAAIPEILQ-ERDRLYQALQELPQLR-V-WPSAANFLYLRLSQ 323 (374)
T ss_pred -HHHHHHHHHhcCC-CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHH-HHHHHHHHHHhCCCcE-e-CCCcceEEEEeCCC
Confidence 4678887766532 35678899999888875 2455555554444 4777888998887766 4 58889999999874
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
. .++.++...+ .++||.|.++ .+++||+++.+ +++++++++|+++++++
T Consensus 324 ~-----~~~~~~~~~l-~~~gi~v~~~-----~~~lRls~~~~-~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 324 D-----AALAALHQAL-KAQGTLVRHT-----GGGLRITIGTP-EENQRTLERLQAALTQL 372 (374)
T ss_pred C-----CCHHHHHHHH-HHCCEEEEeC-----CCeEEEeCCCH-HHHHHHHHHHHHHHhhc
Confidence 2 1456666665 6779999864 46899999864 57899999999988764
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=336.19 Aligned_cols=355 Identities=22% Similarity=0.320 Sum_probs=269.5
Q ss_pred CCCceeecCCCCCCCCCCCC-cHHHHHHHHHHhhCC----CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 44 TRPLIPLGHGDPSAFPSFRT-ASVAVDAIVHSVRSA----RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~-~~~v~~a~~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
..++|+|+.|.|.. .+. .+.+.+++.+.+... ....|++..|.++||++|++++.+.+|+++++++|++|+|
T Consensus 29 ~~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~G 105 (416)
T PRK09440 29 TPGAIMLGGGNPAH---IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNG 105 (416)
T ss_pred CCCceeccCCCCCc---cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccC
Confidence 46789999999763 232 346667777665442 2357999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHhcC-----CCCEEEe-cCCCccchHHHHhhCC----CeEEEeeccCCC-CcccCHHHHHHhhcCCceEE
Q 014603 119 CTQAIEVILTVLAR-----PGANILL-PRPGFPYYEARATHSH----LEVRHFDLLPAK-GWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 119 ~~~a~~~~~~~l~~-----~gd~Vl~-~~~~~~~~~~~~~~~g----~~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~i 187 (422)
+++++..++++++. +||.|++ ++|+|++|...+...+ .....+++..++ ++.+|++.|+ +.++++++
T Consensus 106 a~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i 183 (416)
T PRK09440 106 SQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAI 183 (416)
T ss_pred hHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEE
Confidence 99999999999985 5899999 7999999987655333 222233332211 3678999887 35578899
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
++++|+||||.+++.+++++|+++|+++|++||+||+|...... ........ ...+++++++||||+ ++||+|+||+
T Consensus 184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~-~~~~~~~~-~~~~~vI~~~SfSK~-~~pGlRiG~~ 260 (416)
T PRK09440 184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPG-IIFSEATP-LWNPNIILCMSLSKL-GLPGVRCGIV 260 (416)
T ss_pred EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCC-cchhhcCc-cccCCeEEEeccccc-CCCcceEEEE
Confidence 99999999999999999999999999999999999999753211 00111111 114679999999997 9999999999
Q ss_pred EeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhch-HHHHHH-HHHHHHHHHHHHHHHhhcC-CC--CCC
Q 014603 268 VTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTE-EEFFSK-ITDILRETADICCDRLKEI-PC--ITC 341 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~~-~~--~~~ 341 (422)
+++ +++++++...... ..+++.+.|.++..+|++.. ..+..+ .++.++++++.+++.|++. ++ +.
T Consensus 261 i~~--------~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~- 331 (416)
T PRK09440 261 IAD--------EEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCL- 331 (416)
T ss_pred eCC--------HHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeE-
Confidence 986 4678888776643 34678899999999998643 233333 5667788888888888764 33 33
Q ss_pred CCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---------CCeEEEEeccChHHHHHHHHHHH
Q 014603 342 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 342 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
+..|.+|+|+|+.++... .++.++...+ .++||.|.||..|+. .+++|||++.+++++++++++|.
T Consensus 332 ~~~p~gg~fiw~~~~~~~----~~~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~ 406 (416)
T PRK09440 332 IHKPEGAIFLWLWFKDLP----ITTEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILA 406 (416)
T ss_pred EecCCCceEEEEECCCCC----CCHHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHH
Confidence 347888999999987411 1456666654 677999999988743 25899999878899999999999
Q ss_pred HHHHHhcc
Q 014603 413 AFYDRHAK 420 (422)
Q Consensus 413 ~~~~~~~~ 420 (422)
+++++..+
T Consensus 407 ~~~~~~~~ 414 (416)
T PRK09440 407 EEVEKAYA 414 (416)
T ss_pred HHHHHHhh
Confidence 99987543
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=334.75 Aligned_cols=366 Identities=18% Similarity=0.203 Sum_probs=269.3
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCC-CCCCCCCC-CcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGD-PSAFPSFR-TASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~-~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++...+.+.|+.+.+.+.+. .....++|+.|+ |+. ..++ ..+.+.++..+.+.......|++..|.++||+++
T Consensus 26 ~~~~~~~~~i~~~~~~~~~~----~~~~~l~l~~g~~p~~-~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~ai 100 (423)
T PLN02397 26 HVEPAPPDPILGVTEAFLAD----PSPVKLNLGVGAYRTE-EGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLS 100 (423)
T ss_pred cCCcCCCChHHHHHHHHhhC----CCcceEecccceeeCC-CCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHH
Confidence 45667777788877655443 456789999996 442 1111 1345666654444333444799999999999999
Q ss_pred HHHHhhcCCCCCCCCCEEE--ecCHHHH--HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 97 ADYLNRDLPYKLSPDDVYL--TLGCTQA--IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~~--~~g~~~a--~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
++++.+..+....+++|.. +.+++++ +...+..++.|||+|++++|+|+.|...++..|.+++.+++.+.+++++|
T Consensus 101 a~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d 180 (423)
T PLN02397 101 AKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLD 180 (423)
T ss_pred HHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccC
Confidence 9999654332233334311 2233333 33344445569999999999999999999999999999987544457899
Q ss_pred HHHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCCCccccC-CCCC
Q 014603 173 LDAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT--PFVPMGVFG-SIVP 246 (422)
Q Consensus 173 ~~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~~-~~~~ 246 (422)
++.+++.+. ++++++++++||||||.+++.+++++|+++|+++|++||+||+|..+.+++. ...++..+. ..++
T Consensus 181 ~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 260 (423)
T PLN02397 181 FDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHE 260 (423)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCc
Confidence 998877664 4677888899999999999999999999999999999999999999988541 222222222 2246
Q ss_pred eEEEecCccccCCCCceeEEEE--eeCCCCcccchhHHH----HHHhhhh-hccCcchHHHHHHHHHHhhch--HHH---
Q 014603 247 VLTLGSISKRWIVPGWRLGWLV--TSDPNGILQDSGIVD----SIKSFLN-ISSDPATFIQGAVPQILEKTE--EEF--- 314 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~--~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~a~~~~l~~~~--~~~--- 314 (422)
+++++||||+|+++|+|+||++ .++ ++++. .+..... ...+++.+.|.++..+|+... +.+
T Consensus 261 vI~~~SfSK~~~~~G~RvG~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~ 333 (423)
T PLN02397 261 ILVAQSYAKNMGLYGERVGALSVVCKS-------ADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKE 333 (423)
T ss_pred EEEEEECcccCCCccccceEEEEEeCC-------HHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8999999999999999999985 322 23333 3333332 234567788999988887531 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC----CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC
Q 014603 315 FSKITDILRETADICCDRLKEIPC----ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 390 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 390 (422)
+++.++.++++++.+.+.|+++ + +. +..|++|+|+|++++ .+++.+|++++||.+.++
T Consensus 334 ~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~-~~~p~gg~fl~~~l~----------~~~~~~Ll~~~~V~v~~~------ 395 (423)
T PLN02397 334 LKGMADRIISMRQKLYDALEAR-GSPGDWS-HITKQIGMFSFTGLN----------KEQVDRMTKEYHIYMTRD------ 395 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCCCC-cccCCceEEEecCCC----------HHHHHHHHHhCCEEECCC------
Confidence 6778889999999999999988 4 66 447999999998773 347888999999999753
Q ss_pred CeEEEEec-cChHHHHHHHHHHHHHHH
Q 014603 391 DWLRITFA-VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 391 ~~iRis~~-~~~~~l~~~~~~l~~~~~ 416 (422)
+ ||+++ .+++++++++++|+++++
T Consensus 396 ~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 396 G--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred C--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 2 99998 899999999999999985
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=326.74 Aligned_cols=333 Identities=21% Similarity=0.322 Sum_probs=265.5
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+.++++|+.|.+. +++|+.+.+++.+.+.. ...|++. +.+++|+++++++ ++++++|++|+|+++++
T Consensus 19 ~~~~i~l~~~~~~----~~~p~~~~~a~~~~~~~--~~~y~~~-~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l 85 (356)
T PRK08056 19 PDQLLDFSANINP----LGMPVSLKRAIIDNLDC--AERYPDV-EYRHLHQALARHH------QVPASWILAGNGETESI 85 (356)
T ss_pred hhhEEEeccccCC----CCCCHHHHHHHHHHHHh--cccCcCc-cHHHHHHHHHHHh------CcChhhEEECCCHHHHH
Confidence 5678999999855 68889999999887654 3468764 5899999999998 57889999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
..+++++ .+|+ ++++.|+|..+...++..|.+++.+++++++++.+| +.+++.+.++++++++++|+||||.+++.+
T Consensus 86 ~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~ 162 (356)
T PRK08056 86 FAVVSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQ 162 (356)
T ss_pred HHHHHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHH
Confidence 9999887 5675 777899999999999999999999998765666666 445555667889999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++++|+++|++++++||+||+|..+.+.+....+. +...+++++++||||+|+++|+|+||+++++ +++++
T Consensus 163 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~-------~~~~~ 233 (356)
T PRK08056 163 LLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPGLRLGYLVNSD-------DAAVA 233 (356)
T ss_pred HHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcchhheeeecCC-------HHHHH
Confidence 99999999999999999999999877654322121 2223578999999999999999999999853 35666
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+..... ..+++.+.|.++..+++. ..+..+.++.++++++.+.+.|++++++. + .|.+++|+|++++.
T Consensus 234 ~l~~~~~-~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~~~~~~~~~~~~------ 302 (356)
T PRK08056 234 RMRRQQM-PWSINAFAALAGEVILQD--RAYQQATWQWLAEEGARFYQALCALPLLT-V-WPGRANYLFLRCER------ 302 (356)
T ss_pred HHHHhCC-CCchhHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCcE-E-cCCCCcEEEEEcCC------
Confidence 6665432 235667888888888864 56777888999999999999999887776 3 35568899998863
Q ss_pred CCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
++.++...++ ++||.|.+|..|.. .+++||+++. .++.+.+++.|++++
T Consensus 303 -~~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 303 -PDIDLQRALL-TQRILIRSCANYPGLDSRYYRVAIRS-AAENERLLAALRNVL 353 (356)
T ss_pred -ChHHHHHHHH-HCCeEEEECCCCCCCCCCEEEEEEcC-HHHHHHHHHHHHHHH
Confidence 3456767665 57999999998843 4699999984 356667777766654
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=328.20 Aligned_cols=332 Identities=22% Similarity=0.321 Sum_probs=267.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+.++|+|+.|.+. +.+++.+.+++.+.... ...|++..| .++|+++++++ ++++++|++|+|++++
T Consensus 34 ~~~~~i~l~~~~~~----~~~~~~~~~al~~~~~~--~~~Y~~~~g-~~lr~~ia~~~------~~~~~~i~~t~G~~~~ 100 (371)
T PRK05166 34 GVPRIAKLGSNENP----LGPSPAVRRAFADIAEL--LRLYPDPQG-RALREAIAART------GVPADRIILGNGSEDL 100 (371)
T ss_pred CCcceEEcCCCCCC----CCCCHHHHHHHHHHHHH--hhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHH
Confidence 46689999999855 46678899998875433 457988777 59999999998 5678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..++.+++++||+|+++.|+|..+...++..|.+++.++.++ ++++|++.+++.++++++++++++|+||||.+++.
T Consensus 101 l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~ 178 (371)
T PRK05166 101 IAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTA 178 (371)
T ss_pred HHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCH
Confidence 9999999999999999999999999999999999999988753 35789999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
+++++|+++|++ +++||+||+|..+.+++.....+..+. ..+++++++||||.|+++|+|+||+++++ +++
T Consensus 179 ~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~-------~~l 250 (371)
T PRK05166 179 DQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSD-------PEL 250 (371)
T ss_pred HHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCC-------HHH
Confidence 999999999975 889999999998875432222222222 23478999999999999999999988753 467
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
.+.+...... .+++.++|.++..++.. ..++++.++.++++++.+.+.|+++ ++. + .|.+|+|+|++++.
T Consensus 251 ~~~~~~~~~~-~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~-~p~~g~fl~~~~~~---- 320 (371)
T PRK05166 251 VGLLDRVRTP-FNVNGAAQAAALAALDD--EEHLAKGVALALAERERLKKELAEM-GYR-I-APSRANFLFFDARR---- 320 (371)
T ss_pred HHHHHHhccC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-cCe-e-CCCcCCEEEEeCCC----
Confidence 7777655432 35678888888888864 4678888899999999999999988 665 4 56678899998753
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccC--hHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE--PSALEDGLGRM 411 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~--~~~l~~~~~~l 411 (422)
++.++...+++ +||.+.||..++..+++||+++.+ .+.+.++++++
T Consensus 321 ---~~~~l~~~l~~-~gi~v~p~~~~~~~~~iRi~~~~~~~~~~l~~~l~~i 368 (371)
T PRK05166 321 ---PASAVAEALLR-QGVIVKPWKQPGFETFIRVSIGSPEENDHFVAALDKV 368 (371)
T ss_pred ---CHHHHHHHHHH-CCeEEecCCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 46677777654 699999998777789999999953 24444444443
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=317.92 Aligned_cols=333 Identities=21% Similarity=0.372 Sum_probs=279.8
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..++++|+.+. ..+++++.+.+++.+.+. ..+.|+.. ...+++++++++++ ..++++|++++|+++.+
T Consensus 21 ~~~~i~LssNe----nP~gp~~~~~~~~~~~~~--~~~rYPd~-~~~~l~~a~a~~~~-----~~~~~~V~~gnGsde~i 88 (356)
T COG0079 21 LPGIIKLSSNE----NPYGPPPKVIEAIRAALD--KLNRYPDP-DYRELRAALAEYYG-----VVDPENVLVGNGSDELI 88 (356)
T ss_pred CccceeecCCC----CCCCCCHHHHHHHHHHHH--hhccCCCC-cHHHHHHHHHHHhC-----CCCcceEEEcCChHHHH
Confidence 33689999998 336788999999988776 35688876 67999999999994 16788999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
..++++++.+||+|+++.|+|.-|...++..|.+++.++..+ +..|++.+.+.+.++++++++||||||||..++.+
T Consensus 89 ~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~ 165 (356)
T COG0079 89 ELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPRE 165 (356)
T ss_pred HHHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHH
Confidence 999999999999999999999999999999999999999754 77899999998888899999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
+++++++.+.+ +.+||+||+|..+. +. ..+..+...+++++++||||+||++|+|+||++++ +++++
T Consensus 166 ~l~~l~~~~~~-~~~vVvDEAY~eF~--~~--~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~--------~~~i~ 232 (356)
T COG0079 166 ELRALLEALPE-GGLVVIDEAYIEFS--PE--SSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN--------PELIA 232 (356)
T ss_pred HHHHHHHhCCC-CcEEEEeCchhhcC--Cc--hhhhhccCCCCEEEEEecHHhhhcchhceeeccCC--------HHHHH
Confidence 99999999988 99999999999865 32 12222224456999999999999999999998875 68999
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+.+....+ +.+.+++.++.+++++ ++++++.++++.+.++++.+.|+.++ +. ...|+.++|++++++..
T Consensus 233 ~l~~vr~p~-~v~~~a~~aa~aal~~--~~~~~~~~~~~~~~r~rl~~~l~~~~-~~-~v~pS~aNFvlv~~~~~----- 302 (356)
T COG0079 233 ALNKVRPPF-NVSSPALAAAIAALRD--ADYLEESVERIREERERLYAALKALG-LF-GVFPSQANFVLVRVPDA----- 302 (356)
T ss_pred HHHHhcCCC-CCCHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHHHHHhCC-CC-eecCCCCcEEEEECCCc-----
Confidence 998888654 6788999999999987 48999999999999999999999985 44 23677799999998741
Q ss_pred CCHHHHHHHHHHhcCeEEecCCC-CCCCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGIT-VGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~-~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
....+...| .++||.|+.... ...++++||++++.+++ ++++++|++++..
T Consensus 303 -~~~~l~~~L-~~~giivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~ 354 (356)
T COG0079 303 -EAAALAEAL-LKKGILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG 354 (356)
T ss_pred -cHHHHHHHH-HHCCEEEEeCCCCCCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence 233555555 556999999865 22367999999988776 9999998887754
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=324.94 Aligned_cols=329 Identities=16% Similarity=0.267 Sum_probs=260.5
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..++|+|+.+.+. +++++.+.+++.+.+.. ...|++.. ..+||+++|+++ ++++++|++|+|+++++
T Consensus 21 ~~~~i~l~~~~n~----~~~~~~~~~a~~~~~~~--~~~Y~~~~-~~~Lr~aia~~~------~v~~~~I~it~G~~~~i 87 (360)
T PRK07392 21 PDAILDFSASINP----LGPPESVIAAIQSALSA--LRHYPDPD-YRELRLALAQHH------QLPPEWILPGNGAAELL 87 (360)
T ss_pred cccEEEeCCcCCC----CCCCHHHHHHHHHHHHH--hhcCCCcC-HHHHHHHHHHHh------CcChhhEEECCCHHHHH
Confidence 4568999998744 67889999999887654 55788754 689999999999 57899999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCc---ccCHHHHHHhhcCCceEEEEeCCCCCccccc
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGW---EVDLDAVEALADENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~ 200 (422)
..+++++. +||.|++++|+|..+...++..|.+++.+++++++++ ..+++.+++.. ++++++++++||||||.++
T Consensus 88 ~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~ 165 (360)
T PRK07392 88 TWAGRELA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLW 165 (360)
T ss_pred HHHHHHhC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCc
Confidence 99999875 6889999999999999999999999999998755443 24566665543 4678899999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchh
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+.+++.++ ++++++ +|+||+|..+.+++.....+..+...+++++++||||.|+++|+|+||++++ ++
T Consensus 166 ~~~~l~~l---~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~--------~~ 233 (360)
T PRK07392 166 SREAILPL---LEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAH--------PD 233 (360)
T ss_pred CHHHHHHH---HHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCC--------HH
Confidence 97766555 557775 6669999998776532222223444568999999999999999999999986 46
Q ss_pred HHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc
Q 014603 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360 (422)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (422)
+++.+..... ..+++.+.|.++..+|++ ..+.++.++.++++++.+.+.|++++++. + .|.+++|+|++++.
T Consensus 234 ~~~~~~~~~~-~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~~~~fl~~~~~~--- 305 (360)
T PRK07392 234 RLQRWQQWRD-PWPVNGLAAAAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLT-P-LPSAANFLLVQSQG--- 305 (360)
T ss_pred HHHHHHhhCC-CCCCCHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCCCCCEEEEEcCC---
Confidence 7777765443 246788999999999975 45677777888999999999999888876 4 45778999988763
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccC--hHHHHHHHHHH
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVE--PSALEDGLGRM 411 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~--~~~l~~~~~~l 411 (422)
++.++...+++++||.|.||..|+. ++++||+++.+ .+++.++++++
T Consensus 306 ----~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~ 356 (360)
T PRK07392 306 ----SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAI 356 (360)
T ss_pred ----CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4667777777788999999998864 57999999964 35666666654
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=325.49 Aligned_cols=327 Identities=19% Similarity=0.294 Sum_probs=264.8
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+.++|+|+.|.+. ++++|.+.+++.+.. ....|++ .+.+++|+++++++ ++++++|++|+|+++++
T Consensus 51 ~~~~i~l~~n~~p----~~~~~~v~~a~~~~~---~~~~Yp~-~~~~~lr~~ia~~~------~~~~~~I~~t~Ga~~~i 116 (380)
T PLN03026 51 PEDIVKLDANENP----YGPPPEVLEALGNMK---FPYVYPD-PESRRLRAALAEDS------GLESENILVGCGADELI 116 (380)
T ss_pred ccceEEccCCCCC----CCCCHHHHHHHHhhH---hhccCCC-CCHHHHHHHHHHHh------CcChhhEEEcCCHHHHH
Confidence 5688999999854 577788888886531 2345765 46799999999998 57889999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh-cCCceEEEEeCCCCCcccccCH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA-DENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~nptG~~~~~ 202 (422)
..++.+++++||+|++++|+|..|...++..|.+++.++.+ +++.+|++.+++.+ .++++++++++|+||||.+++.
T Consensus 117 ~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~ 194 (380)
T PLN03026 117 DLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISD 194 (380)
T ss_pred HHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCH
Confidence 99999999999999999999999988889999999988874 35678999999988 6789999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|++.+ ++||+||+|..+.+.+. ....+...+++++++||||.|+++|+|+||++++ ++++
T Consensus 195 ~~l~~l~~~~----~~vi~DeaY~~~~~~~~---~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~--------~~~i 259 (380)
T PLN03026 195 DDLLKILELP----ILVVLDEAYIEFSTQES---RMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFP--------LSII 259 (380)
T ss_pred HHHHHHHhcC----CEEEEECcchhhcCCcc---hHHHHHhCCCEEEEecchHhhcCccccceeeecC--------HHHH
Confidence 9999888753 89999999998765432 1222334467999999999999999999999986 5678
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+...... .+.+.++|.++.++|+. ..++++.++.++++++.+.+.|++++++. + .|.+++|+|++++..
T Consensus 260 ~~l~~~~~~-~~~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~p~~~~f~~~~~~~~---- 330 (380)
T PLN03026 260 EYLWRAKQP-YNVSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGLLKEVPFLE-P-YPSDANFILCRVTSG---- 330 (380)
T ss_pred HHHHHhcCC-CCCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCe-E-CCCCCeEEEEECCCC----
Confidence 887766543 35678889999999975 46788889999999999999999985454 3 678899999988632
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
.++.++...++ ++||.|+++..++..+++|||+++ .++.+++++.|++
T Consensus 331 -~~~~~~~~~l~-~~gI~v~~~~~~~~~~~lRis~~~-~~~~~~l~~al~~ 378 (380)
T PLN03026 331 -RDAKKLKEDLA-KMGVMVRHYNSKELKGYIRVSVGK-PEHTDALMEALKQ 378 (380)
T ss_pred -CCHHHHHHHHH-HCCeEEEECCCCCCCCEEEEecCC-HHHHHHHHHHHHH
Confidence 14667777765 679999998766567899999995 3466666666554
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=323.33 Aligned_cols=336 Identities=20% Similarity=0.304 Sum_probs=275.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++.++++|+.+.+. +.+++.+.+++.+.... ...|++.. ..++|+++++++ ++++++|++|+|++++
T Consensus 30 ~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~--~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~~t~G~~~~ 96 (367)
T PRK02731 30 GIADIIKLASNENP----LGPSPKAIEAIRAAADE--LHRYPDGS-GFELKAALAEKF------GVDPERIILGNGSDEI 96 (367)
T ss_pred CCCceEEecCCCCC----CCCCHHHHHHHHHHHHh--hcCCCCCc-HHHHHHHHHHHh------CcCHHHEEEcCCHHHH
Confidence 46789999999855 45678899999887753 45787654 479999999998 5678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..++.+++++||+|++++|+|..+...+...|.+++.++. +++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 97 l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~ 173 (367)
T PRK02731 97 LELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPA 173 (367)
T ss_pred HHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCH
Confidence 99999999999999999999999888888889999988876 346789999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++.++++.|+ +|+++|+||+|..+.+.+.....+..++..+++++++|+||.|+++|+|+||++++ ++++
T Consensus 174 ~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~--------~~~~ 244 (367)
T PRK02731 174 EEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP--------PEII 244 (367)
T ss_pred HHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC--------HHHH
Confidence 99999999875 59999999999887765433333333334467899999999999999999999986 4677
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+++...... ...+.++|.++..+|+. ..++++.++.++++++.+.+.|+++ ++. + .|..|.|+|+.++..
T Consensus 245 ~~l~~~~~~-~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~g~~~~i~~~~~---- 314 (367)
T PRK02731 245 DALNRVRQP-FNVNSLALAAAVAALDD--DAFVEKSRALNAEGMAWLTEFLAEL-GLE-Y-IPSVGNFILVDFDDG---- 314 (367)
T ss_pred HHHHHccCC-CCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-c-CCCCceEEEEECCCC----
Confidence 777765533 35567889999888875 5678888899999999999999998 776 3 355688999988532
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
.++.++...+ .++||.+.++..|+.++++||++++ .++++++++.|+++++
T Consensus 315 -~~~~~~~~~L-~~~gI~v~~~~~~~~~~~iRis~~~-~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 315 -KDAAEAYQAL-LKRGVIVRPVAGYGLPNALRITIGT-EEENRRFLAALKEFLA 365 (367)
T ss_pred -CCHHHHHHHH-HHCCEEEEeCCCCCCCCeEEEecCC-HHHHHHHHHHHHHHHh
Confidence 2566777766 4679999999888767899999984 5788999999988764
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=321.46 Aligned_cols=357 Identities=17% Similarity=0.208 Sum_probs=264.7
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC---CCCEEEecCHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS---PDDVYLTLGCTQA 122 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~---~~~i~~~~g~~~a 122 (422)
..+|.++|..+........+.+.+++.+. .......|++..|.+++|+++++++.+..+ ... .++|++|+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~a 81 (388)
T PRK08637 4 TKYNATIGMATEKGGPMYLSSLQDLLNDL-TPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHG 81 (388)
T ss_pred cceecceeeEecCCCcchHHHHHHHHHhh-ccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHH
Confidence 44667777654322222334444443332 223456899999999999999999876543 222 3678999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHh-hCCCeEEEeeccCCCCcccCHHHHHHhhc----CCceEEEEeCCCCCcc
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARAT-HSHLEVRHFDLLPAKGWEVDLDAVEALAD----ENTVALVIINPGNPCG 197 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~p~nptG 197 (422)
+..++.+++++||+|++++|+|+.+...+. ..|.+++.+++.. +++++|++.+++.++ +.+.++++++||||||
T Consensus 82 l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG 160 (388)
T PRK08637 82 LSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTG 160 (388)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCC
Confidence 999999999999999999999999988654 6799999998742 234689999988775 4556677889999999
Q ss_pred cccCHHHHHHHHHHHHH-----cCcEEEEcccccccccCCCCCCCc-ccc-CCCCCe--EEEecCccccCCCCceeEEEE
Q 014603 198 NVYTYQHLQKIAETAKK-----LGIMVIADEVYDHLAFGNTPFVPM-GVF-GSIVPV--LTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~-----~~~~li~D~~~~~~~~~~~~~~~~-~~~-~~~~~~--i~i~s~sK~~~~~G~r~G~~~ 268 (422)
.+++.+++++|+++|++ ++++||+||+|..+.|++....++ ..+ +..+++ ++++|+||.|++||+|+||++
T Consensus 161 ~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~ 240 (388)
T PRK08637 161 YTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFIT 240 (388)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEE
Confidence 99999999999999885 899999999999988876543332 222 233464 445699999999999999999
Q ss_pred eeCCCCcccchhHHHHHHhhh----h-hccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcC---CCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFL----N-ISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEI---PCI 339 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~---~~~ 339 (422)
.+.+.. ..+++.+.+.... . ...+++.+.|.++..+|++.. ..++.+.+..++++++.+.+.|+.. +++
T Consensus 241 ~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~ 318 (388)
T PRK08637 241 FGTKAG--SSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAW 318 (388)
T ss_pred EccccC--CcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 753100 0145666665421 1 223678899999999997532 3445556667888888888888764 245
Q ss_pred CCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 340 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
. +..|.+|+|+|++++.. ++.+++..+++++||.+.+. ..+++||+++ .+.+++++++++|.++++++
T Consensus 319 ~-~~~~~~g~~~~~~l~~~------~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 319 Q-AYPFNSGYFMCLKLKGV------DAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred c-cccccceEEEEecCChH------HHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 5 44778899999998631 45677777767789988753 2578999998 68899999999999999765
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=322.61 Aligned_cols=327 Identities=21% Similarity=0.321 Sum_probs=267.1
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQA 122 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a 122 (422)
+.++|+|+.|.+. +++++.+.+++.+.+.......|++ .+.+++|++++++++ +.+ ++|++|+|++++
T Consensus 25 ~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~------~~~~~~I~~t~G~~~~ 93 (356)
T PRK04870 25 ATGMVKLDAMENP----YRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG------VPAGADVLLGNGSDEL 93 (356)
T ss_pred CCCceeCcCCCCC----CCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC------cCCCCcEEEcCCHHHH
Confidence 4679999999854 7889999999999886544567887 577999999999994 333 589999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-CCceEEEEeCCCCCcccccC
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~ 201 (422)
+..++++++++||+|++++|+|..+...++..|.+++.++++ +++.+|++.+++.+. .+++++++++|+||||.+++
T Consensus 94 i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~ 171 (356)
T PRK04870 94 IQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFD 171 (356)
T ss_pred HHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999875 346799999999885 47899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.+++++|+++| ++++|+||+|..+.+.. . ...+...+++++++|||| ++++|+|+||++++ +++
T Consensus 172 ~~~~~~i~~~~---~~~ii~De~y~~~~~~~--~--~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~--------~~~ 235 (356)
T PRK04870 172 DADVERIIEAA---PGLVVVDEAYQPFAGDS--W--LPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGH--------PAW 235 (356)
T ss_pred HHHHHHHHHHC---CCEEEEECCchhhcCcc--h--HHHHhhCCCEEEEecchh-hhhHHHhhhhhhCC--------HHH
Confidence 99999999988 77899999998765321 1 112233457999999999 69999999999986 467
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++++...... .+.+.+.|.++..++++ ..++++.+++++++++.+.+.|++++++. + .|.+|+|+|++++
T Consensus 236 i~~~~~~~~~-~~~~~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~~~~~~~~~~~----- 305 (356)
T PRK04870 236 IAELDKVRPP-YNVNVLTQATALFALEH--VDVLDAQAAQLRAERTRLAAALAALPGVT-V-FPSAANFILVRVP----- 305 (356)
T ss_pred HHHHHHccCC-CcCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCCCCeEEEEECC-----
Confidence 7777765532 35677888888888864 34578888899999999999999988876 4 4667889999886
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
+..++.. +++++||.|.++..|+. .+++||++++ .++.+++++.|.++
T Consensus 306 ---~~~~~~~-~l~~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~al~~~ 355 (356)
T PRK04870 306 ---DAAAVFD-GLKTRGVLVKNLSGMHPLLANCLRVTVGT-PEENAQFLAALKAA 355 (356)
T ss_pred ---CHHHHHH-HHHHCCEEEEECCCCCCCCCCeEEEeCCC-HHHHHHHHHHHHHh
Confidence 2445554 45778999999988753 6799999994 56777888777664
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=323.13 Aligned_cols=335 Identities=19% Similarity=0.316 Sum_probs=268.3
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhC--CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS--ARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..|+|+.|.+. +++++.+.+++.+.+.. .....|++ .+.+++|+++++++++.+|.++++++|++|+|+++++
T Consensus 27 ~~i~l~~~~~~----~~~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l 101 (368)
T PRK03317 27 VPVRLNTNENP----YPPSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL 101 (368)
T ss_pred ceeEecCCCCC----CCCCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH
Confidence 56999999855 68899999999988753 23457865 5789999999999999888889999999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-CCceEEEEeCCCCCcccccCH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~~ 202 (422)
..++++++++||.|+++.|+|..+...++..|.+++.++. .+++++|++.+++.+. .+++++++++|+||||.+++.
T Consensus 102 ~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~ 179 (368)
T PRK03317 102 QQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPL 179 (368)
T ss_pred HHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCH
Confidence 9999999999999999999999999999888888777765 3457899999999876 467889999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+++| ++++|+||+|..+.+.+.. ......+..+++++++||||.|+++|+|+||++++ ++++
T Consensus 180 ~~l~~l~~~~---~~~lI~DE~y~~~~~~~~~-~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~--------~~~~ 247 (368)
T PRK03317 180 DDVEAILDAA---PGIVVVDEAYAEFRRSGTP-SALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA--------PAVV 247 (368)
T ss_pred HHHHHHHHHC---CceEEEeCCchhhcccCCc-CHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC--------HHHH
Confidence 9999888876 6999999999987765532 12222233457899999999999999999999986 5688
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+..... ....+++.|.++.++|+.. ..+.+..++++++++.+.+.|++. ++. +..+.+++++|..++
T Consensus 248 ~~l~~~~~-~~~~s~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~------ 316 (368)
T PRK03317 248 DALRLVRL-PYHLSAVTQAAARAALRHA--DELLASVAALRAERDRVVAWLREL-GLR-VAPSDANFVLFGRFA------ 316 (368)
T ss_pred HHHHhcCC-CCCCCHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHHHHHC-CCE-eCCCCCcEEEEeccC------
Confidence 88776553 3467789999999999752 334455567888899999999987 666 446676776665553
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+..++...+ .++||.+.+. +.++++||++++ .++++++++.|++++.-
T Consensus 317 --~~~~~~~~l-~~~Gv~v~~~---~~~~~iRi~~~~-~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 317 --DRHAVWQGL-LDRGVLIRDV---GIPGWLRVTIGT-PEENDAFLAALAEVLAT 364 (368)
T ss_pred --CHHHHHHHH-HHCCEEEEeC---CCCCeEEEecCC-HHHHHHHHHHHHHHHHH
Confidence 355565655 5679999874 346899999974 56889999998887643
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=319.52 Aligned_cols=328 Identities=19% Similarity=0.331 Sum_probs=264.5
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..++|+|+.|.+. +++++.+.+++.+.+... ...|++. +.+++|+++|+++ ++++++|++|+|+++++
T Consensus 23 ~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~-~~~~lr~aia~~~------~~~~~~I~it~G~~~al 90 (353)
T PRK05387 23 LAKLIKLNTNENP----YPPSPKVLEAIRAALGDD-LRLYPDP-NADALRQAIAAYY------GLDPEQVFVGNGSDEVL 90 (353)
T ss_pred ccceeeccCCCCC----CCCCHHHHHHHHHHhhhh-hhcCCCC-cHHHHHHHHHHHh------CCCHHHEEEcCCHHHHH
Confidence 4578999999965 577889999998876642 4578654 5699999999998 57889999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
..++++++++||+|++++|+|..+...++..|.+++.++.+ +++.+|++.+++ .++++++++|+||||.++|.+
T Consensus 91 ~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~ 164 (353)
T PRK05387 91 AHAFLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLA 164 (353)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHH
Confidence 99999999999999999999999999899999999998874 346789998864 356789999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++++|+++++ ++++|+||+|..+. +....++ ....+++++++||||.|+++|+|+||++++ +++++
T Consensus 165 ~~~~l~~~~~--~~~livDe~y~~~~--~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~--------~~~~~ 230 (353)
T PRK05387 165 EIERILAANP--DSVVVIDEAYVDFG--GESAIPL--IDRYPNLLVVQTFSKSRSLAGLRVGFAIGH--------PELIE 230 (353)
T ss_pred HHHHHHHhCC--CcEEEEeCcccccC--CcchHHH--HhhCCCEEEEEehhHhhcchhhhceeeecC--------HHHHH
Confidence 9999998654 89999999997643 3222222 233467899999999999999999999985 46778
Q ss_pred HHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 284 SIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 284 ~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++...... ..+.+.+.|.++..++.+ ..++++.++++.++++.+.+.|+++ ++. + .|.+++|+|+.++..
T Consensus 231 ~l~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~~~~~~~~~~~--- 302 (353)
T PRK05387 231 ALNRVKNSFNSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEAL-GFE-V-LPSKANFVFARHPSH--- 302 (353)
T ss_pred HHHHhhccCCCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CCCcCcEEEEECCCC---
Confidence 77766532 235678899999888864 4667888889999999999999988 665 3 466788999887631
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
++.++...+ .++||.+.+.......+++|++++ +.+++++++++|++++.
T Consensus 303 ---~~~~~~~~l-~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 303 ---DAAELAAKL-RERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred ---CHHHHHHHH-HHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 566777766 567999976433334679999998 45899999999988764
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=317.41 Aligned_cols=324 Identities=17% Similarity=0.187 Sum_probs=260.3
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
+++++|+.|.+. ++++|.+.+++.+.+.. ...|++.. .+++|++|++++ ++++++|++|+|+++++.
T Consensus 43 ~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~--~~~Y~~~~-~~~Lr~aia~~~------~v~~e~I~it~Gs~~ai~ 109 (370)
T PRK09105 43 EGAVFLNANECP----LGPSPAARDAAARSAAL--SGRYDLEL-EDDLRTLFAAQE------GLPADHVMAYAGSSEPLN 109 (370)
T ss_pred CCcEEecCCCCC----CCCCHHHHHHHHHHHHH--hcCCCCch-HHHHHHHHHHHh------CcChhhEEEcCChHHHHH
Confidence 457999999854 68889999999887653 24687654 889999999988 578999999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
.++.+++++||+|++++|+|..+...++..|.+++.++.++ ++.+|++.+++. .++++++++++|+||||.+++.++
T Consensus 110 ~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~ 186 (370)
T PRK09105 110 YAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRAD 186 (370)
T ss_pred HHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHH
Confidence 99999999999999999999999999999999999998753 467899999876 457889999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++++++.|+ +++++|+||+|..+.. . . +...+ +..+++++++||||.||++|+|+||++++ +++++
T Consensus 187 l~~l~~~~~-~~~~lIvDEaY~~f~~--~-~-s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~--------~~~i~ 253 (370)
T PRK09105 187 IEWLLANKP-AGSVLLVDEAYIHFSD--A-P-SVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAAR--------PDLLA 253 (370)
T ss_pred HHHHHHhCC-CCcEEEEECchHHhcc--C-c-chHHHHhhCCCEEEEecccHhhcCCccceeeeecC--------HHHHH
Confidence 999999764 5999999999976542 1 1 22222 33467999999999999999999999986 46777
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+... . ...++.+.|.++.++|.+ ..++++.+++++++++.+.+.|+++ ++. +..|+++ |++++++.
T Consensus 254 ~l~~~-~-~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~~~-f~~~~~~~------ 320 (370)
T PRK09105 254 KLARF-G-HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKK-GYK-CTPSQAN-CFMVDVKR------ 320 (370)
T ss_pred HHHhc-C-CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCC-cCCCCCc-EEEEeCCC------
Confidence 77665 2 235677788888888875 5788888899999999999999987 776 4355555 55676642
Q ss_pred CCHHHHHHHHHHhcCeEEecCCCCC-CCCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGITVG-LKDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
+..++...+++ +||.+.. .|. .++++||++++ +++++++++.|++++
T Consensus 321 -~~~~l~~~L~~-~gI~v~~--~~~~~~~~~Ris~~~-~~~~~~l~~al~~~~ 368 (370)
T PRK09105 321 -PAKAVADAMAK-QGVFIGR--SWPIWPNWVRVTVGS-EEEMAAFRSAFAKVM 368 (370)
T ss_pred -CHHHHHHHHHH-CCcEEec--CCCCCCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence 46777777765 4999833 343 36899999985 567888888877654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=316.07 Aligned_cols=335 Identities=17% Similarity=0.245 Sum_probs=271.1
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
...++|+.|++. +++++.+.+++.+.... ...|++. +.+++|++||+++ ++++++|++|+|+++++.
T Consensus 32 ~~~~~l~~~~~~----~~~~~~~~~a~~~~~~~--~~~Y~~~-~~~~Lr~~ia~~~------~~~~~~I~it~G~~~~l~ 98 (369)
T PRK08153 32 PFRARIGANESG----FGPSPSVIAAMREAAAE--IWKYGDP-ENHDLRHALAAHH------GVAPENIMVGEGIDGLLG 98 (369)
T ss_pred cceeEecCCCCC----CCCCHHHHHHHHHHHHH--hhcCCCC-ccHHHHHHHHHHh------CCCHHHEEEcCCHHHHHH
Confidence 345799999854 78889999999887643 3468775 4789999999998 578899999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh-cCCceEEEEeCCCCCcccccCHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA-DENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
.++.+++++||.|+++.|+|+.+...+...|.+++.++.+. ...|++.+++.+ +.+++++++++|+||||.++|.+
T Consensus 99 ~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~---~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~ 175 (369)
T PRK08153 99 LIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRD---DREDLDALLDAARRENAPLVYLANPDNPMGSWHPAA 175 (369)
T ss_pred HHHHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCC---CCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHH
Confidence 99999999999999999999999888888999999888743 247888887765 45788999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++.+|+++|++ |++||+||+|..+.+++. ..++.. ..+++++++||||.|+++|+|+||++++ +++++
T Consensus 176 ~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~-~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~v~~--------~~~~~ 243 (369)
T PRK08153 176 DIVAFIEALPE-TTLLVLDEAYCETAPAGA-APPIDT--DDPNVIRMRTFSKAYGLAGARVGYAIGA--------PGTIK 243 (369)
T ss_pred HHHHHHHhCCC-CcEEEEeCchhhhcCccc-chhhhh--cCCCEEEEecchHhccCcchheeeeecC--------HHHHH
Confidence 99999999874 999999999998876542 222222 2357999999999999999999999986 46777
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+...... .+.+.+.|.++.++|++ ..++++.++.++++++.+.+.|++. ++. . .|.+++|+|+.++.. .
T Consensus 244 ~l~~~~~~-~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~~~~~L~~~-g~~-~-~p~~~~f~~~~~~~~----~ 313 (369)
T PRK08153 244 AFDKVRNH-FGMNRIAQAAALAALKD--QAYLAEVVGKIAAARDRIAAIARAN-GLT-P-LPSATNFVAIDCGRD----G 313 (369)
T ss_pred HHHHhhcC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-c-CCCcCcEEEEECCCC----c
Confidence 77765543 46788999999999974 5778888999999999999999987 665 3 477889999887521 0
Q ss_pred CCHHHHHHHHHHhcCeEEe-cCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 364 NSDMEFALKLAKEESVIVL-PGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~-~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
....++...+. ++||.+. |+.. ..++++||+++ ++++++.+++.|++++...++
T Consensus 314 ~~a~~l~~~l~-~~Gi~v~~p~~~-~~~~~iRis~~-~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 314 AFARAVLDGLI-ARDIFVRMPGVA-PLDRCIRVSCG-PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred ccHHHHHHHHH-HCCeEEeeCCCC-CCCCeEEEecC-CHHHHHHHHHHHHHHHHHhhc
Confidence 13556666654 5699995 6543 23579999998 578999999999999875543
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=296.97 Aligned_cols=329 Identities=24% Similarity=0.426 Sum_probs=275.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCC--CCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh-hCCC
Q 014603 80 FNCYSSTVGILPARRAIADYLNRDLP--YKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT-HSHL 156 (422)
Q Consensus 80 ~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~ 156 (422)
...|.+..|++++|+++|+|+.+..| ...+|+++++++|+|.|++.+..+|.+|||..|++.|.|+++..-++ ..|+
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgv 193 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 193 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCc
Confidence 34788899999999999999987554 45688999999999999999999999999999999999999976666 4688
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF 230 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~ 230 (422)
+++++....++++.++.+.+|+++.+ +.+.++++||+||-|++++++++..++.++.++|+.+|+||+|++..|
T Consensus 194 eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF 273 (471)
T KOG0256|consen 194 EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVF 273 (471)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccccc
Confidence 99999888888999999999986632 678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccC-----CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHH
Q 014603 231 GNTPFVPMGVFG-----SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQ 305 (422)
Q Consensus 231 ~~~~~~~~~~~~-----~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 305 (422)
+...+.++.++. ..+++.++.|+||-||+||+|+|.+...+ +.+.....+...+ +..+...|..+..
T Consensus 274 ~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~n-------e~VvsaA~kmssf-~~vSs~tQ~~la~ 345 (471)
T KOG0256|consen 274 DKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNN-------EDVVSAATKMSSF-GLVSSQTQYLLAS 345 (471)
T ss_pred CccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecC-------hHHHHHHHHHhhc-cCCcHHHHHHHHH
Confidence 877666654332 33568999999999999999999999865 4566666555544 5778899999999
Q ss_pred HHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc-CCCCHHHHHHHHHHhcCeEEe
Q 014603 306 ILEKTE--EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVL 382 (422)
Q Consensus 306 ~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~ 382 (422)
.|.+.. +.++.+...+++.+.+++.+.|+++ ||.+. ...+|.|+|+.+..--.. ......++.++++.+-++.+.
T Consensus 346 LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl-~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlS 423 (471)
T KOG0256|consen 346 LLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCL-KSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLS 423 (471)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCcee-ecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccC
Confidence 998743 6789999999999999999999998 88844 888999999988542111 112345667777777799999
Q ss_pred cCCCCCC--CCeEEEEeccC-hHHHHHHHHHHHHHHHHh
Q 014603 383 PGITVGL--KDWLRITFAVE-PSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 383 ~g~~~~~--~~~iRis~~~~-~~~l~~~~~~l~~~~~~~ 418 (422)
||..|.. ++|+|+||++. ++.++-+++||++++.++
T Consensus 424 pG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~ 462 (471)
T KOG0256|consen 424 PGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQ 462 (471)
T ss_pred CCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 9998765 89999999954 555555999999998754
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=311.26 Aligned_cols=326 Identities=20% Similarity=0.317 Sum_probs=259.2
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
+..++|+.|.+. +++|+.+.+++.+.+.......|++. +.+++|+++++++ ++++++|++|+|+++++.
T Consensus 22 ~~~~~l~~~~~~----~~~p~~~~~a~~~~~~~~~~~~y~~~-~~~~lr~~ia~~~------~~~~~~i~it~G~~~~l~ 90 (351)
T PRK14807 22 PYKYKMDANETP----FELPEEVIKNIQEIVKSSQVNIYPDP-TAEKLREELARYC------SVVPTNIFVGNGSDEIIH 90 (351)
T ss_pred CceeEccCCCCC----CCCCHHHHHHHHHHhhcCcccCCCCc-cHHHHHHHHHHHh------CCCcccEEEecCHHHHHH
Confidence 456899999965 68889999999887765445678764 4689999999998 568899999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~ 203 (422)
.++++++++||+|++++|+|..+...++..|.+++.++.+ +++.+|++.+++.+++ +++++++++|+||||.+++.+
T Consensus 91 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~ 168 (351)
T PRK14807 91 LIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIERE 168 (351)
T ss_pred HHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence 9999999999999999999999988889999999988875 3467899999998865 889999999999999999988
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++.++++ +++.++|+||+|..+. +....+ .+...+++++++||||.|+++|+|+||++++ +++++
T Consensus 169 ~l~~l~~---~~~~~~ivDe~y~~~~--~~~~~~--~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~--------~~~~~ 233 (351)
T PRK14807 169 DIIKIIE---KSRGIVVVDEAYFEFY--GNTIVD--VINEFENLIVLRTLSKAFGLAGLRVGYAVAN--------ENILK 233 (351)
T ss_pred HHHHHHH---hCCCEEEEeCcchhhc--ccchHH--HhhhCCCEEEEecchHhcccchhceeeeecC--------HHHHH
Confidence 8777765 5677899999998752 322212 1233467999999999999999999999985 46788
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+...... ...+.+.|.++..+++. .++++..+.++++++.+.+.|++++++. + .|.+|.|+|++++
T Consensus 234 ~~~~~~~~-~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~-~-~~~~~~~~~i~~~------- 300 (351)
T PRK14807 234 YLNLVKSP-YNINSLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIK-V-YPSKTNFILVKFK------- 300 (351)
T ss_pred HHHHccCC-CCcCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CcCCccEEEEEcC-------
Confidence 77765543 35678899999999874 4567777788888999999998887876 4 4566889998885
Q ss_pred CCHHHHHHHHHHhcCeEEecCCC-CCCCCeEEEEeccChHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGIT-VGLKDWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~-~~~~~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
+..++...+ .++||.|.++.. ++..+++||+++.+ ++.+++++.|+++
T Consensus 301 -~~~~~~~~l-~~~gV~v~~~~~~~~~~~~iRis~~~~-~~~~~l~~~l~~~ 349 (351)
T PRK14807 301 -DADYVYQGL-LERGILVRDFSKVEGLEGALRITVSSC-EANDYLINGLKEL 349 (351)
T ss_pred -CHHHHHHHH-HHCCEEEEECCCCCCCCCeEEEEcCCH-HHHHHHHHHHHHh
Confidence 345555555 566999988653 34478999999853 4566666666554
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=314.79 Aligned_cols=329 Identities=21% Similarity=0.367 Sum_probs=268.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+.++|||++|++. ++++|.+++++.++... ...|++..+ +++|+.+++++ ++++++|++++|++++
T Consensus 17 ~~~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~--~~~y~~~~~-~~lr~~ia~~~------~~~~~~i~~~~G~~~~ 83 (346)
T TIGR01141 17 GGKEVIKLNSNENP----FGPPPKAKEALRAEADK--LHRYPDPDP-AELKQALADYY------GVDPEQILLGNGSDEI 83 (346)
T ss_pred CCCceEEccCCCCC----CCCCHHHHHHHHHhHHH--hhcCCCCCH-HHHHHHHHHHh------CcChHHEEEcCCHHHH
Confidence 35689999999965 67789999999987643 346877655 89999999999 4678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..++.+++++||+|++++|+|..+...++..|.+++.++.+++ +.+|++.+++.+.++++++++++|+||||.+++.
T Consensus 84 l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~ 161 (346)
T TIGR01141 84 IELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSR 161 (346)
T ss_pred HHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCH
Confidence 99999999999999999999999888888899999999887543 5689999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++.++++.|+ +|+++|+|++|+.+.+.+. . .......+++++++|+||+|+++|+|+||++++ +++.
T Consensus 162 ~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~-~--~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~--------~~~~ 229 (346)
T TIGR01141 162 SDIEAVLERTP-EDALVVVDEAYGEFSGEPS-T--LPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIAN--------AEII 229 (346)
T ss_pred HHHHHHHHhCC-CCcEEEEECchhhhcCCcc-H--HHHHhhCCCEEEEehhhHhhhchhhhceeeecC--------HHHH
Confidence 99999999887 7999999999987654321 1 111222346899999999998999999999985 4677
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+++...... .+.+.++|.++..+++.. .++++.+++++++++.+++.|++++++. + .|.+|.|+|+.++.
T Consensus 230 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~-~~~~g~~~~~~~~~----- 299 (346)
T TIGR01141 230 DALNKVRAP-FNLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLE-V-YPSDANFVLIRFPR----- 299 (346)
T ss_pred HHHHhccCC-CCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCE-E-CCCcCCEEEEecCC-----
Confidence 777765433 356788899888888753 3688888999999999999999987876 4 45567899988863
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEEeccChHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
++.++...+. ++||.+.||..|+. ++++|+|++ ++++++++++.|+
T Consensus 300 --~~~~~~~~L~-~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 300 --DADALFEALL-EKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred --CHHHHHHHHH-HCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHhC
Confidence 3566776664 57999999987744 789999988 5788999888763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=313.73 Aligned_cols=321 Identities=19% Similarity=0.317 Sum_probs=255.4
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
...++|+.+... +++++.+ .....+.|+... ..++++++++++ ++++++|++|+|+++++.
T Consensus 28 ~~~~~l~~Nenp----~~~~~~~--------~~~~~~~Yp~~~-~~~l~~~~a~~~------g~~~~~I~~~~Gs~e~i~ 88 (351)
T PRK01688 28 NGDVWLNANEYP----TAVEFQL--------TQQTLNRYPECQ-PKAVIENYAAYA------GVKPEQVLVSRGADEGIE 88 (351)
T ss_pred CCceEecCCCCC----CCCChhh--------cccccccCCCCC-hHHHHHHHHHHh------CCCHHHEEEcCCHHHHHH
Confidence 346899988743 4555543 112356787643 479999999998 678999999999999999
Q ss_pred HHHHHhcCCC-CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 125 VILTVLARPG-ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l~~~g-d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
.++++++++| |.|+++.|+|..|...++..|.+++.++++. ++.+|++.+++.+ ++++++++|||+||||.+++.+
T Consensus 89 ~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~ 165 (351)
T PRK01688 89 LLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD--NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQ 165 (351)
T ss_pred HHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHH
Confidence 9999999887 8999999999999999999999999998753 4789999998877 5789999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++++|++.|++ +.+||+||+|..+.... .....+...+++++++||||.||++|+|+||++++ +++++
T Consensus 166 ~l~~l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~--------~~~i~ 233 (351)
T PRK01688 166 DLRTLLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLAN--------EEVIN 233 (351)
T ss_pred HHHHHHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCC--------HHHHH
Confidence 99999999986 68899999998865221 11122233468999999999999999999999985 56888
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+...... ...+.+.+.++.++|++...+++++.++.+.++++.+.+.|++++++. ...|++++|+|++++
T Consensus 234 ~l~~~~~~-~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~ps~~nfi~~~~~------- 304 (351)
T PRK01688 234 LLLKVIAP-YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVE-QVFDSETNYILARFT------- 304 (351)
T ss_pred HHHhccCC-CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-eECCCCCcEEEEEcC-------
Confidence 77766543 345667788888888753346778888889999999999999987764 236778999999885
Q ss_pred CCHHHHHHHHHHhcCeEEecCCCC-CCCCeEEEEeccChHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGITV-GLKDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~~-~~~~~iRis~~~~~~~l~~~~~~l 411 (422)
++.++...++ ++||.|+++..+ +.++++|||+++ .++.+++++.|
T Consensus 305 -~~~~l~~~L~-~~gi~vr~~~~~~~~~~~iRis~~~-~~e~~~l~~al 350 (351)
T PRK01688 305 -ASSAVFKSLW-DQGIILRDQNKQPGLSNCLRITIGT-REECQRVIDAL 350 (351)
T ss_pred -CHHHHHHHHH-HCCeEEEECCCcCCCCCeEEEeCCC-HHHHHHHHHhh
Confidence 3566777665 669999977654 557899999984 57888888776
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=308.71 Aligned_cols=303 Identities=19% Similarity=0.298 Sum_probs=242.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCC-CEEEecCCCccchHHHHhhCCCeE
Q 014603 80 FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPG-ANILLPRPGFPYYEARATHSHLEV 158 (422)
Q Consensus 80 ~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g-d~Vl~~~~~~~~~~~~~~~~g~~~ 158 (422)
...|+... .+++|+++++++ ++++++|++|+|+++++..++++++.+| |.|++++|+|..+...++..|.++
T Consensus 53 ~~~Y~~~~-~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~ 125 (364)
T PRK04781 53 TRRYPDPQ-PPGLRSALAALY------GCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPL 125 (364)
T ss_pred hccCCCCC-HHHHHHHHHHHh------CcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEE
Confidence 34687654 689999999998 5688999999999999999999999898 799999999998888888899999
Q ss_pred EEeeccC-CCCcccCHHHHHHh-hcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 159 RHFDLLP-AKGWEVDLDAVEAL-ADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 159 ~~~~~~~-~~~~~~d~~~l~~~-~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
+.+++.. ++++.+|++.+++. ..++++++++++|+||||.+++.+++++++++|++ +++||+||+|..+.+...
T Consensus 126 ~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~-~~~iI~Deay~~f~~~~~--- 201 (364)
T PRK04781 126 VEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQG-KALVVVDEAYGEFSDVPS--- 201 (364)
T ss_pred EEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCC-CcEEEEeCcchhhcCCcc---
Confidence 9999743 34567788887654 46688999999999999999999999999999864 799999999998764321
Q ss_pred CccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
.....+..+++++++||||+|++||+|+||++++ +++++.+...... .+.+.+.|.++..+|+.....+..
T Consensus 202 ~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~--------~~l~~~l~~~~~~-~~~~~~~~~~a~~~l~~~~~~~~~ 272 (364)
T PRK04781 202 AVGLLARYDNLAVLRTLSKAHALAAARIGSLIAN--------AELIAVLRRCQAP-YPVPTPCAALAEQALSAPALAVTA 272 (364)
T ss_pred hHHHHhhCCCEEEEecChhhcccccceeeeeeCC--------HHHHHHHHhccCC-CCCCHHHHHHHHHHHhcccHHHHH
Confidence 1222344568999999999999999999999986 5788888776643 356778888888888764335566
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC-CCCCeEEE
Q 014603 317 KITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-GLKDWLRI 395 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-~~~~~iRi 395 (422)
+..++++++++.+.+.|++++++. ...|++|+|+|++++ +..++...+ .++||.|.+|..| +.++++||
T Consensus 273 ~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~~g~f~~~~~~--------~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~Ri 342 (364)
T PRK04781 273 RRVAEVRAERERLHAALAQLPGVR-RVYPSQGNFLLVRFD--------DAEAAFQAL-LAAGVVVRDQRAAPRLSDALRI 342 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-eECCCCCcEEEEEcC--------CHHHHHHHH-HHCCeEEeeCCCCCCCCCeEEE
Confidence 666788999999999999987764 236888999999886 245555554 6789999999765 34689999
Q ss_pred EeccChHHHHHHHHHHHH
Q 014603 396 TFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 396 s~~~~~~~l~~~~~~l~~ 413 (422)
+++.+ ++.+++++.|++
T Consensus 343 s~~~~-~~~~~l~~al~~ 359 (364)
T PRK04781 343 TLGTP-EQNDRVLAALQR 359 (364)
T ss_pred eCCCH-HHHHHHHHHHHH
Confidence 99853 556666666554
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=305.31 Aligned_cols=325 Identities=18% Similarity=0.220 Sum_probs=255.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+.+++||+.+.+. +++++.+++++.+.+.. ...|++..|.+++|+++++++ ++++++|++|+|++++
T Consensus 20 ~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~aia~~~------~~~~~~I~it~Ga~~a 87 (349)
T PRK07908 20 AGPGLLDFAVNVRH----DTPPEWLRERLAARLGD--LAAYPSTEDERRARAAVAARH------GRTPDEVLLLAGAAEG 87 (349)
T ss_pred CCCCeEEecCCCCC----CCCCHHHHHHHHHHhhH--hhcCCCccchHHHHHHHHHHh------CcChhhEEECCCHHHH
Confidence 46789999999854 67889999999988754 457988889999999999998 5688999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..+++ +++ +.++++.|+|..+...++..|.+++.++++. ++.+|++.+ .++++++++++|+||||.++|.
T Consensus 88 l~~~~~--l~~-~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~--~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~ 158 (349)
T PRK07908 88 FALLAR--LRP-RRAAVVHPSFTEPEAALRAAGIPVHRVVLDP--PFRLDPAAV----PDDADLVVIGNPTNPTSVLHPA 158 (349)
T ss_pred HHHHHh--cCC-CeEEEeCCCChHHHHHHHHcCCEEEeeccCc--ccCcChhHh----ccCCCEEEEcCCCCCCCCCcCH
Confidence 999988 456 5677889999999999999999999998754 267888754 4568899999999999999998
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++.+ +|+ ++.++|+||+|+.+.. +. ..++...+ .+++++++||||.|+++|+|+||++++ ++++
T Consensus 159 ~~l~~---l~~-~~~~iIvDe~y~~~~~-~~-~~~l~~~~-~~~~i~i~S~SK~~~l~GlRiG~~~~~--------~~~~ 223 (349)
T PRK07908 159 EQLLA---LRR-PGRILVVDEAFADAVP-GE-PESLAGDD-LPGVLVLRSLTKTWSLAGLRVGYALGA--------PDVL 223 (349)
T ss_pred HHHHH---HHh-cCCEEEEECcchhhcc-CC-cccccccc-CCCEEEEeecccccCCccceeeeeecC--------HHHH
Confidence 76555 454 4788999999987643 32 23333332 246899999999999999999999985 4677
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+...... ...+.+.+.++..+++.....++++.+++++++++.+.+.|+++ ++. +..|.+|+|+|++++.
T Consensus 224 ~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~g~~~~~~~~~----- 295 (349)
T PRK07908 224 ARLTRGRAH-WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GAR-VVDPAAAPFVLVRVPD----- 295 (349)
T ss_pred HHHHhcCCC-CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcE-eccCCCceEEEEECCc-----
Confidence 777765433 34556777777777764335678888999999999999999988 776 4467889999998863
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
..++ ..+++++||.+.||..|+. ++++|||++ ++++++++++.|++++.
T Consensus 296 ---~~~~-~~~l~~~gI~v~~g~~f~~~~~~~vRis~~-~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 296 ---AELL-RKRLRERGIAVRRGDTFPGLDPDYLRLAVR-PRAEVPVLVQALAEILK 346 (349)
T ss_pred ---HHHH-HHHHHhCCEEEEECCCCCCCCCCeEEEEeC-CCccHHHHHHHHHHHHh
Confidence 3344 4455778999999998853 689999996 45677788877777653
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=307.70 Aligned_cols=329 Identities=22% Similarity=0.325 Sum_probs=262.2
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
.++|+|+.+.+. +++++.+.+++.+.+.. ...|+ ..|.+++|+++++++ ++++++|++++|+++++.
T Consensus 22 ~~~i~l~~~~~~----~~~~~~~~~a~~~~~~~--~~~y~-~~g~~~lr~~ia~~~------~~~~~~I~~~~G~~~~l~ 88 (352)
T PRK03321 22 PGAIKLSSNETP----FGPLPSVRAAIARAAAG--VNRYP-DMGAVELRAALAEHL------GVPPEHVAVGCGSVALCQ 88 (352)
T ss_pred ccceeccCCCCC----CCCCHHHHHHHHHHHHh--cCcCC-CCcHHHHHHHHHHHh------CcCHHHEEECCCHHHHHH
Confidence 468999999866 56778999999887653 45675 468999999999999 467889999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
.++..++++||+|+++.|+|..+...++..|.+++.++.+++ +.+|++.+++.++++++++++++|+||||.+++.++
T Consensus 89 ~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~ 166 (352)
T PRK03321 89 QLVQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAE 166 (352)
T ss_pred HHHHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHH
Confidence 999999999999999999999888888889999999887543 568999999988888999999999999999999998
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
+.++++.| ++|++||+||+|..+.+++.....+..+...+++++++||||.|+++|+|+||++++ +++++.
T Consensus 167 l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~--------~~~~~~ 237 (352)
T PRK03321 167 LARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGH--------PEVIAA 237 (352)
T ss_pred HHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCC--------HHHHHH
Confidence 88888876 469999999999988876543333334444568999999999999999999999986 468888
Q ss_pred HHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCC
Q 014603 285 IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 364 (422)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 364 (422)
+.... ...+.+.++|.++.++|.. .+.+ .+..+++.+.++.+.+.|++. ++. . .+.+|+|+|++++.
T Consensus 238 ~~~~~-~~~~~s~~~q~~a~~~l~~-~~~~-~~~~~~~~~~r~~~~~~L~~~-~~~-~-~~~~g~~i~i~l~~------- 304 (352)
T PRK03321 238 LRKVA-VPFSVNSLAQAAAIASLAA-EDEL-LERVDAVVAERDRVRAALRAA-GWT-V-PPSQANFVWLPLGE------- 304 (352)
T ss_pred HHHhc-CCCCCCHHHHHHHHHHhcC-HHHH-HHHHHHHHHHHHHHHHHHHHC-CCc-c-CCCCCCEEEEeCCC-------
Confidence 77654 2346788899888888864 2333 444455556667888999887 665 3 34568899998853
Q ss_pred CHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 365 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 365 ~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
++.++...+ +++||.+.+ |+ .+++||+++ +.++.++++++|++++.
T Consensus 305 ~~~~~~~~l-~~~gI~v~~---~~-~~~iRi~~~-~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 305 RTADFAAAA-AEAGVVVRP---FA-GEGVRVTIG-APEENDAFLRAARAWRA 350 (352)
T ss_pred CHHHHHHHH-HHCCEEEEc---cC-CCcEEEeeC-CHHHHHHHHHHHHHHhc
Confidence 356676665 668999987 33 356999985 45788888888887653
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=304.57 Aligned_cols=326 Identities=21% Similarity=0.323 Sum_probs=258.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE-ecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL-TLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-~~g~~~ 121 (422)
++.++|+|+.|++. ++++|.+.+++.+.+.. ...|++.. .+++|+++++++ ++++++|++ ++|+++
T Consensus 32 ~~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~y~~~~-~~~lr~~ia~~~------~~~~~~i~~~~~Ga~~ 98 (361)
T PRK00950 32 DPESIIKLGSNENP----LGPSPKAVEAIEKELSK--IHRYPEPD-APELREALSKYT------GVPVENIIVGGDGMDE 98 (361)
T ss_pred CccceEEccCCCCC----CCCCHHHHHHHHHHHHh--hcCCCCCC-HHHHHHHHHHHh------CCCHHHEEEeCCCHHH
Confidence 35589999999854 56788899998887654 34677654 489999999998 567889999 789999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccC
Q 014603 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 122 a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~ 201 (422)
++..++++++++||+|+++.|+|..+...++..|.+++.++.+ +++.+|++.+++.++++++++++++|+||||.+++
T Consensus 99 ~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~ 176 (361)
T PRK00950 99 VIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIP 176 (361)
T ss_pred HHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcC
Confidence 9999999999999999999999999888888899999888743 45679999999988878899999999999999998
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.+++.++ |+++|+++|+||+|..+. +.....+ ....+++++++||||.|+++|+|+||++++ +++
T Consensus 177 ~~~l~~l---~~~~~~~li~De~y~~~~--~~~~~~~--~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~--------~~~ 241 (361)
T PRK00950 177 EEDIRKI---LESTDALVFVDEAYVEFA--EYDYTPL--ALEYDNLIIGRTFSKVFGLAGLRIGYGFVP--------EWL 241 (361)
T ss_pred HHHHHHH---HHHCCcEEEEECchhhhC--ccchHHH--HHhcCCEEEEEeehHhhcCchhhcchhcCC--------HHH
Confidence 7776655 557899999999998764 2211121 222357899999999999999999999986 467
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++.+....... ..+.+.+.++..+++. .+++++..++++++++.+.+.|+ +. . .|.+++|+|+.++.
T Consensus 242 ~~~~~~~~~~~-~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l~----~~-~-~~~~~~~i~~~~~~---- 308 (361)
T PRK00950 242 IDYYMRAKTPF-SLTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNELP----FK-V-YPSEANFVLVDVTP---- 308 (361)
T ss_pred HHHHHHhcCCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhcC----ee-E-CCCcceEEEEECCC----
Confidence 77776655432 4667888888888864 46677888888888888887775 33 2 46678899998843
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
.++.++...+. ++||.+.||..|+. ++++|++++ +.+++++++++|++++
T Consensus 309 --~~~~~~~~~l~-~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il 360 (361)
T PRK00950 309 --MTAKEFCEELL-KRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIV 360 (361)
T ss_pred --CCHHHHHHHHH-HCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence 15677777775 56999999887754 569999998 4568999999998865
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=303.39 Aligned_cols=321 Identities=17% Similarity=0.253 Sum_probs=249.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+...++|+.+... +++++.+ . .. ..+.|++. +.++||+++|+++ ++++++|++|+|+++++
T Consensus 30 ~~~~~~l~~ne~~----~~~~~~~-----~-~~--~~~~Yp~~-~~~~Lr~aia~~~------~~~~~~I~it~Gs~~~i 90 (354)
T PRK04635 30 GRGDIWINANESP----FNNEYKL-----D-LA--RLNRYPEC-QPPELINAYSAYA------GVAPEQILTSRGADEAI 90 (354)
T ss_pred CCCcEEeeCCCCC----CCCChhh-----h-hH--HhccCCCC-CHHHHHHHHHHHh------CcCHHHEEEeCCHHHHH
Confidence 3456899998844 4555432 1 11 24578875 4799999999998 67999999999999999
Q ss_pred HHHHHHhcCCC-CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 124 EVILTVLARPG-ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 124 ~~~~~~l~~~g-d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
..++++++++| |+|+++.|+|..|...++..|.+++.++++. ++.+|++.++. + ++++++++++|+||||.+++.
T Consensus 91 ~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~ 166 (354)
T PRK04635 91 ELLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA--DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDR 166 (354)
T ss_pred HHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC--CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCH
Confidence 99999999998 8999999999999998999999999998753 46788888874 3 578999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|++.|+ +++||+||+|..+... .....+ ....+++++++||||+|+++|+|+||++++ ++++
T Consensus 167 ~~l~~l~~~~~--~~~vivDeay~~~~~~-~s~~~~--~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~--------~~~~ 233 (354)
T PRK04635 167 ADIEQLIEMTP--DAIVVVDEAYIEFCPE-YSVADL--LASYPNLVVLRTLSKAFALAGARCGFTLAN--------EELI 233 (354)
T ss_pred HHHHHHHHhCC--CcEEEEeCchHhhccC-cchHHH--HhhCCCEEEEechHHHhhhhHHHHhhhhCC--------HHHH
Confidence 99999999876 4999999999876532 111111 223467899999999999999999999986 4677
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+...... .+.+.+.+.++.++|.+....++.+.++.++++++.+.+.|++++++. + .|..|.|+|++++
T Consensus 234 ~~l~~~~~~-~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~~g~f~~~~~~------ 304 (354)
T PRK04635 234 EILMRVIAP-YPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAK-V-LEGNGNYVLAKFD------ 304 (354)
T ss_pred HHHHhhcCC-CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCce-E-CCCCCcEEEEECC------
Confidence 777654432 355667788888888654345567778889999999999999986666 4 3445789998885
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
+..++.. +++++||.+.++..++.++++|||+++ .++++++++.|++
T Consensus 305 --~~~~~~~-~l~~~gv~v~~~~~~~~~~~lRis~~~-~e~~~~l~~al~~ 351 (354)
T PRK04635 305 --DVDAVFK-ALWDAGIVARAYKDPRLANCIRFSFSN-RAETDKLIGLIRN 351 (354)
T ss_pred --CHHHHHH-HHHHCCEEEEECCCCCCCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 2445544 456789999876554457899999874 5788888887754
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=295.27 Aligned_cols=317 Identities=18% Similarity=0.261 Sum_probs=246.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++.++|+|+.|++. +++|+.+.+++.+.+.......|++. +.+++|+++++++++.. +++++|++|+|++++
T Consensus 17 ~~~~~i~l~~~~~~----~~~p~~~~~~~~~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~~~~---~~~~~i~it~Ga~~~ 88 (335)
T PRK14808 17 EKRDRTYLALNENP----FPFPEDLVDEVFRRLNSDTLRIYYDS-PDEELIEKILSYLDTDF---LSKNNVSVGNGADEI 88 (335)
T ss_pred CCCceeEecCCCCC----CCCCHHHHHHHHHHhhhhhhhcCCCC-ChHHHHHHHHHHhCCCC---CCcceEEEcCCHHHH
Confidence 56789999999955 78899999999887755444457654 78999999999996532 689999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..+++++ |.|++++|+|..+...++..|.+++.++.+.+ +.++... + +.++++++++||||||.+++.
T Consensus 89 i~~~~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~ 157 (335)
T PRK14808 89 IYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN----V-GEGDVVFIPNPNNPTGHVFER 157 (335)
T ss_pred HHHHHHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH----c-cCCCEEEEeCCCCCCCCCcCH
Confidence 99999887 68999999999999999999999999987542 3333222 2 246889999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+ +++++||+||+|..+. +....+ .+...+++++++||||+|+++|+|+||++++ ++++
T Consensus 158 ~~l~~l~----~~~~~ii~DE~Y~~f~--~~~~~~--~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~--------~~~~ 221 (335)
T PRK14808 158 EEIERIL----KTGAFVALDEAYYEFH--GESYVD--LLKKYENLAVIRTFSKAFSLAAQRIGYVVSS--------EKFI 221 (335)
T ss_pred HHHHHHH----hcCCEEEEECchhhhc--CCchHH--HHHhCCCEEEEEechhhccCcccceEEEEeC--------HHHH
Confidence 9998886 4799999999999863 222212 1223357999999999999999999999986 4688
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+++...... .+.+.++|.++..+++. ..+..+..+.+.++++.+.+.|+++ ++. +..| .|.|+|++++..
T Consensus 222 ~~l~~~~~~-~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-~g~f~~~~l~~~---- 291 (335)
T PRK14808 222 DAYNRVRLP-FNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-ITDS-RGNFVFIFMEKE---- 291 (335)
T ss_pred HHHHHhcCC-CCCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCC-CCeEEEEeCCCc----
Confidence 888765533 45677889888888874 3466777788888899999999987 666 4344 577889988732
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
+..++... +.++||.|... .+++||+++.. ++.+++++.|++
T Consensus 292 --~~~~~~~~-l~~~Gi~V~~~-----~~~~Risi~~~-~~~~~~~~~l~~ 333 (335)
T PRK14808 292 --EKERLLEH-LRAKNIAVRSF-----REGVRITIGKR-EENDMILKELEV 333 (335)
T ss_pred --cHHHHHHH-HHHCCeEEEEC-----CCCeEEecCCH-HHHHHHHHHHHh
Confidence 34555554 56679999852 46899998864 567777776654
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=294.95 Aligned_cols=319 Identities=20% Similarity=0.320 Sum_probs=248.1
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+.+.|+|+.+.+. +++++.+.+++.+.+.......|++ .|.+++|+++++++ ++++++|++|+|+++++
T Consensus 17 ~~~~i~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~-~g~~~lr~~ia~~~------~~~~~~I~~t~G~~~~l 85 (337)
T PRK03967 17 GNYRIWLDKNENP----FDLPEELKEEIFEELKRVPFNRYPH-ITSDPLREAIAEFY------GLDAENIAVGNGSDELI 85 (337)
T ss_pred CCceEEecCCCCC----CCCCHHHHHHHHHHhhcCccccCCC-CCHHHHHHHHHHHh------CcCcceEEEcCCHHHHH
Confidence 4578999999855 5778899999998876444567864 68999999999999 47889999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
..++..+ +||+|+++.|+|..+...++..|.+++.++.+ +++.+|++.+++.. ++++++++++|+||||.+++.+
T Consensus 86 ~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~ 160 (337)
T PRK03967 86 SYLVKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLK--EDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEE 160 (337)
T ss_pred HHHHHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHH
Confidence 9988876 79999999999999888888999999999875 34679999998865 4678888999999999999987
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++.+++ ++++++|+||+|..+. +....+ .....+++++++||||.|+++|+|+||++++ +++++
T Consensus 161 ~l~~i~----~~~~~ii~De~y~~~~--~~~~~~--~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~--------~~~i~ 224 (337)
T PRK03967 161 EILKVL----ETGKPVVLDEAYAEFS--GKSLIG--LIDEYPNLILLRTFSKAFGLAGIRAGYAIAN--------EEIID 224 (337)
T ss_pred HHHHHH----hcCCEEEEECchhhhc--ccchHH--HHhhCCCEEEEecchHhhcchhhhheeeecC--------HHHHH
Confidence 776654 3699999999998864 222111 1233457999999999999999999999986 46778
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+...... .+.+.++|.++..+++. .++..+..+.+.++++.+.+.|.+. . .|++++|+|++++
T Consensus 225 ~~~~~~~~-~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-----~-~~~~~~~~~~~~~------- 288 (337)
T PRK03967 225 ALYRIKPP-FSLNILTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEY-----A-YPSDANFLLLKLD------- 288 (337)
T ss_pred HHHhhcCC-CCCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccC-----c-CCCCCcEEEEhHH-------
Confidence 88776543 35678999999988874 3456666667777788888888764 1 4677899997662
Q ss_pred CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 364 NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
+...++ ++||.|.++.. ...+++||+++. .++.+++++.|+.+.+.|
T Consensus 289 -----~~~~l~-~~gi~v~~~~~-~~~~~~Ri~~~~-~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 289 -----AYDYLL-ENGIVVRKLSG-RLEGHIRVTVGK-REENDEFIKALKEIKEGY 335 (337)
T ss_pred -----HHHHHH-HCCEEEEeCCC-CCCCeEEEecCC-HHHHHHHHHHHHHHHHhc
Confidence 345554 56999987643 236799999985 345556666666665554
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=294.33 Aligned_cols=312 Identities=16% Similarity=0.211 Sum_probs=237.9
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
.+|+|+.+.-. ++. . ...+.|+.. ...+||+++++++ ++.+++|++|+|+++++..
T Consensus 17 ~~i~l~~Nenp----~~~-----------~--~~~~~Yp~~-~~~~lr~~ia~~~------~~~~~~I~it~Gs~~~l~~ 72 (332)
T PRK06425 17 RIIDFSANIND----FMD-----------I--GDISIYPEI-SYTDIEDQIKIYT------QGLKIKVLIGPGLTHFIYR 72 (332)
T ss_pred CEEEeccccCC----CcC-----------h--hhcccCcCc-CHHHHHHHHHHHh------CCCcceEEECCCHHHHHHH
Confidence 67999988722 210 0 124568654 4789999999999 6788999999999999999
Q ss_pred HHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 126 ILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 126 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
+++. +++| .|++++|+|..|...++..|.+++.+|++. ++.|.+.+++ .+++++++++||||||.+++.+++
T Consensus 73 ~~~~-~~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~ 144 (332)
T PRK06425 73 LLSY-INVG-NIIIVEPNFNEYKGYAFTHGIRISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSL 144 (332)
T ss_pred HHHH-hCCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHH
Confidence 9974 5676 577779999999999999999999999753 2356555543 378899999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSI 285 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 285 (422)
++|+++|+++|++||+||+|..+.+++. ..........+++++++||||.|++||+|+||++++ +++++.+
T Consensus 145 ~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~--------~~li~~l 215 (332)
T PRK06425 145 LTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATD--------DYNMKIS 215 (332)
T ss_pred HHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecC--------HHHHHHH
Confidence 9999999999999999999998876442 111222233368999999999999999999999986 4677777
Q ss_pred HhhhhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCC
Q 014603 286 KSFLNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 364 (422)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 364 (422)
....... ..+...+ .++.... +.++++.++.++++++.+.+.|+++ ++. ...+.+|+|+|++++
T Consensus 216 ~~~~~~~-~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~~g~f~~~~~~-------- 280 (332)
T PRK06425 216 RKITEPW-SVCDPAI----DFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFR-AAGDPSANFITFMIP-------- 280 (332)
T ss_pred HHcCCCC-ccCHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCCCCceEEEEEcC--------
Confidence 7644322 2222222 2332222 4556778889999999999999988 666 334556889999885
Q ss_pred CHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 365 SDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 365 ~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
++.++...+++ +||.|.||..|+. ++++||+++.+ ++.+++++.|++++
T Consensus 281 ~~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iRis~~~~-~~~~~l~~al~~~~ 331 (332)
T PRK06425 281 DAHDFYSYLLK-NGILVRLLDDYECLGEQYIRIAIRRR-SFNIKLVNALRNFL 331 (332)
T ss_pred CHHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 35677777755 6999999998853 47999999864 58888888887654
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=293.45 Aligned_cols=312 Identities=17% Similarity=0.231 Sum_probs=247.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++++.++|+.|.+. ++++ ..+... .....|++..+ +++|+++++++ ++++++|++|+|++++
T Consensus 15 ~~~~~~~~~~~~~~----~~~~--~~~~~~-----~~~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~G~~~~ 76 (330)
T TIGR01140 15 PPEDWLDFSTGINP----LGPP--VPPIPA-----SAWARYPDPEY-DELRAAAAAYY------GLPAASVLPVNGAQEA 76 (330)
T ss_pred ChhheeEccccCCC----CCCC--hhhcch-----HHHhhCCCccH-HHHHHHHHHHh------CCChhhEEECCCHHHH
Confidence 46778999999854 2332 222111 12347877665 99999999998 5678999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+.++.+.+ .+| .|++++|+|..+...++..|.+++.++ |++.+++.++ +++++++++|+||||.+++.
T Consensus 77 i~~~~~~l-~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~-~~~~v~i~~p~NPtG~~~~~ 144 (330)
T TIGR01140 77 IYLLPRLL-APG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE-ELDVLVLCNPNNPTGRLIPP 144 (330)
T ss_pred HHHHHHHh-CCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc-cCCEEEEeCCCCCCCCCCCH
Confidence 99987664 677 799999999999999999999888775 7788888874 57789999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
+++++|+++|+++|++||+||+|..+.+.. ++..+ +..+++++++|+||.|+++|+|+||++++ +++
T Consensus 145 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~--------~~~ 212 (330)
T TIGR01140 145 ETLLALAARLRARGGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAH--------PAL 212 (330)
T ss_pred HHHHHHHHHhHhcCCEEEEECcccccCCcc----chhhHhccCCCEEEEEecchhhcCchhhhhheeCC--------HHH
Confidence 999999999999999999999998776431 22222 23457899999999999999999999986 467
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++.+...... .+++.++|.++..+++. ..+.++.+++++++++.+.+.|++++.+. . .|.+++|+|+.++
T Consensus 213 ~~~l~~~~~~-~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~~~~f~~~~~~----- 282 (330)
T TIGR01140 213 LARLREALGP-WTVNGPARAAGRAALAD--TAWQAATRARLAAERARLAALLARLGGLE-V-VGGTALFLLVRTP----- 282 (330)
T ss_pred HHHHHhcCCC-CCchHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHHhCCCce-E-CCCCCeEEEEEcC-----
Confidence 7777766532 35677889999988875 45667888999999999999999986565 3 4667899999876
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l 411 (422)
+..++.++++ ++||.+.||..|.. .+++||++++..++ ++++++|
T Consensus 283 ---~~~~l~~~l~-~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 283 ---DAAALHEALA-RRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred ---CHHHHHHHHH-HCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence 3567777775 56999999998852 57999999976665 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=287.67 Aligned_cols=308 Identities=15% Similarity=0.161 Sum_probs=233.1
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
.++|+|+.+... ..++++.+.+ ..+ ..|+.. ..+||++|++++ .+++|++|+|+++++.
T Consensus 20 ~~~i~l~~ne~p---~~~~~~~~~~---~~~-----~~yp~~--~~~Lr~~ia~~~--------~~~~I~it~Gs~~al~ 78 (330)
T PRK05664 20 ADWLDLSTGIAP---WPWPVPAIPA---DAW-----ARLPET--DDGLEAAARAYY--------GAPQLLPVAGSQAAIQ 78 (330)
T ss_pred HHheeecCCcCC---CCCCCcccCH---HHH-----HhCCCC--hHHHHHHHHHHh--------CCCCEEECcCHHHHHH
Confidence 457999999522 1122122221 111 246543 389999999998 3479999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
.+.. +.+||+|++++|+|+.+...++..|.+++.++. +.+++.++ +++++++++|+||||.+++.++
T Consensus 79 ~~~~--~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~----------~~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~ 145 (330)
T PRK05664 79 ALPR--LRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE----------AEVEAALD-SLDVLVVVNPNNPTGRRFDPAR 145 (330)
T ss_pred HHHH--ccCCCEEEEcCCChHHHHHHHHHcCCeEEEech----------hhHhhhhc-CCCEEEEeCCcCCCCCccCHHH
Confidence 8863 579999999999999999999999999988764 23444443 5778899999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
+++|+++|+++|++||+||+|..+. . ..++..+...+++++++||||.|++||+|+||++++ +++++.
T Consensus 146 l~~l~~~~~~~~~~iI~DE~y~~~~--~--~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~--------~~l~~~ 213 (330)
T PRK05664 146 LLAWHARLAARGGWLVVDEAFMDNT--P--QHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAE--------PALLRA 213 (330)
T ss_pred HHHHHHHHHhcCCEEEEECCcccCC--C--cccccccccCCCEEEEeeccccccCCCcceEEEEeC--------HHHHHH
Confidence 9999999999999999999997643 1 123444445568999999999999999999999986 468888
Q ss_pred HHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCC
Q 014603 285 IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 364 (422)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 364 (422)
+...... ...+.+.|.++..+|++ ..+.++.+++++++++.+.+.|+++ ++. . .+..++|+|++++
T Consensus 214 ~~~~~~~-~~~~~~~~~~~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~-~~~~~~f~~~~~~-------- 279 (330)
T PRK05664 214 LAELLGP-WTVSGPTRWLAQAALAD--TPWQRRQRERLLAASQRLAALLRRH-GLT-P-AGGCALFQWVRTE-------- 279 (330)
T ss_pred HHHhcCC-CCCCHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHC-CCc-c-cCCcceEEEEecC--------
Confidence 7766542 35567888899889975 3556778889999999999999987 543 2 2222377887764
Q ss_pred CHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 365 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 365 ~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
++.++...+ .++||.|.+ |+..+++||+++.+.++.+++++.|+...+
T Consensus 280 ~~~~~~~~l-~~~gi~v~~---f~~~~~iRis~~~~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 280 DAAALHEFL-ARRGILTRL---FEQPASLRFGLPADEADWARLDQALLAYRK 327 (330)
T ss_pred CHHHHHHHH-HHCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHh
Confidence 355666555 667999985 445689999999666777777777766544
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=288.50 Aligned_cols=310 Identities=13% Similarity=0.149 Sum_probs=239.3
Q ss_pred CCceeecCCCCCCCCCCCCc-HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEecCHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTA-SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-PDDVYLTLGCTQA 122 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~-~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~~g~~~a 122 (422)
.++|+|+.+... +++| +.+.. .. ...|+.. . .+||+++++++ ++. +++|++|+|++++
T Consensus 24 ~~~i~ls~Nenp----~~~~~~~~~~---~~-----~~~Yp~~-~-~~L~~~ia~~~------~~~~~~~I~i~~Gs~e~ 83 (339)
T PRK06959 24 DAWLDLSTGINP----HGYPVPPVPA---DA-----WRRLPED-D-DGLAACAARYY------GAPDAAHVLPVAGSQAA 83 (339)
T ss_pred hhhceeccCCCC----CCCCCCCCCH---HH-----HHhCCCc-h-HHHHHHHHHHh------CCCCcccEEECcCHHHH
Confidence 567999999833 2333 22211 11 2358754 3 89999999998 444 5899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..+.. ++++|+ |+++.|+|..|...++..|.+++.++.+. +.+ .+..+++++|+||||||.+++.
T Consensus 84 i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~----~~~~~~v~l~nPnNPTG~~~s~ 149 (339)
T PRK06959 84 IRALPA-LLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTL----PAALTHLIVVNPNNPTAERLPA 149 (339)
T ss_pred HHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhc----cccCCEEEEeCCCCCCCCCCCH
Confidence 997765 567776 88999999999999999999988776532 222 2235689999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|++.|.+++.++|+||+|..+.+. .++..+...+++++++||||.|+++|+|+||++++ ++++
T Consensus 150 ~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~--------~~li 217 (339)
T PRK06959 150 ARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAA--------PALL 217 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhccCCCCEEEEecChhhcCCcchheEEEecC--------HHHH
Confidence 99999999999999999999999986532 22333323357999999999999999999999986 5788
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+++...... ...+.+.|.++.++|++ ..+.++.+++++++++.+.+.|+++ ++. + . ..++|+|++++
T Consensus 218 ~~l~~~~~~-~~vs~~~q~a~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~-~-~~~~f~~~~~~------ 284 (339)
T PRK06959 218 AALRDALGA-WTVSGPARHAVRAAFAD--AAWQAAMRERLAADGARLAALLRAH-GFA-V-H-ATPLFSWTDDP------ 284 (339)
T ss_pred HHHHHhcCC-CCCcHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHC-CCC-c-c-CcceEEEEeCC------
Confidence 888876643 35678899999999975 4677888899999999999999998 666 3 2 35788898875
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+..++...+ .++||.|+. |+..+++||+++.+.++.+++++.|+++++.+.
T Consensus 285 --~~~~l~~~l-~~~GI~vr~---~~~~~~lRisi~~~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 285 --RAAALHAAL-ARRGIWTRY---FAPPPSVRFGLPADEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred --CHHHHHHHH-HhCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHHHHh
Confidence 355666665 556999975 344679999997666788999999888776654
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=277.65 Aligned_cols=394 Identities=20% Similarity=0.309 Sum_probs=291.8
Q ss_pred CCCCcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHH------------------
Q 014603 8 NGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVD------------------ 69 (422)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~------------------ 69 (422)
++...++.++..-.....++++.+.. +... .+..+|.|+.|.|.... ++......+
T Consensus 4 ~~~dys~~ls~es~srk~~p~~~~~~-~~s~----~~i~~i~lagGlPnp~~-fp~~~~s~~p~~~~~~e~~~~~~~~~~ 77 (472)
T KOG0634|consen 4 PPKDYSHHLSKESASRKLSPLRALGD-IKSA----SPISIISLAGGLPNPDY-FPIRSDSIKPQGSWKKENGKKLNNVTF 77 (472)
T ss_pred CcccHHHHhcccccccccChHHHhhh-Hhhc----CCCceEEecCCCCCCCc-ccccccccccccCccccccccccceee
Confidence 55566655554444455556666653 3332 24448999999877321 332221111
Q ss_pred HHHHHhhC-----CCCCCCCCCCCCHHHHHHHHHHHhhcCCCC-CCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCC
Q 014603 70 AIVHSVRS-----ARFNCYSSTVGILPARRAIADYLNRDLPYK-LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPG 143 (422)
Q Consensus 70 a~~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~ 143 (422)
++.+.... ....+|++..|+++|...+.+...-..+.+ ...-+|++|+|.|.+++.+++.++.+||.|++..++
T Consensus 78 ~~~~~~~~~~l~~s~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~t 157 (472)
T KOG0634|consen 78 AFENEASENTLPLSRALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYT 157 (472)
T ss_pred eccccCCcccchhhhhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEeccc
Confidence 00010000 123489999999999999999654222222 233489999999999999999999999999999999
Q ss_pred ccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC---------CceEEEEeCC--CCCcccccCHHHHHHHHHHH
Q 014603 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE---------NTVALVIINP--GNPCGNVYTYQHLQKIAETA 212 (422)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---------~~~~i~i~~p--~nptG~~~~~~~l~~i~~~~ 212 (422)
|.+.....+..|++++.++++. .++++|.|++.+.. +++ ++++-| +||||..++.+..++|.++|
T Consensus 158 y~~AL~s~~a~gv~~ipv~md~---~Gi~pE~l~~il~~w~~~~~k~~~p~-vlYTIPTgqNPTG~tls~errk~iy~LA 233 (472)
T KOG0634|consen 158 YPSALQSMEALGVKIIPVKMDQ---DGIDPESLEEILSNWKPGSYKKPKPH-VLYTIPTGQNPTGNTLSLERRKKIYQLA 233 (472)
T ss_pred chHHHHhccccCceEEeccccC---CCCCHHHHHHHHhcCCcccccCCCCe-EEEeCcCCCCCCCCccCHHHHHHHHHHH
Confidence 9999999999998887777643 35899999987632 233 556666 89999999999999999999
Q ss_pred HHcCcEEEEcccccccccCC---C-----C-----------CCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 213 KKLGIMVIADEVYDHLAFGN---T-----P-----------FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 213 ~~~~~~li~D~~~~~~~~~~---~-----~-----------~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
++|+++||.||.|..+.++. . + ..++..++.+.+|+-..||||. .+||+|+||+.+++
T Consensus 234 rKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKi-iaPGlRlG~it~~~-- 310 (472)
T KOG0634|consen 234 RKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKI-IAPGLRLGWITGNS-- 310 (472)
T ss_pred HHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhh-hcCcceeEEeecCH--
Confidence 99999999999999888762 1 1 2234456778899999999999 69999999999863
Q ss_pred CcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHHHHHhhc-CCCC-CCCCCCC
Q 014603 274 GILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEE----EFFSKITDILRETADICCDRLKE-IPCI-TCPKKPE 346 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~L~~-~~~~-~~~~~~~ 346 (422)
.+++++-... ..+.+|+.+.|..+.+.|+...+ .|+.+++..+..++..+..+|.+ +|.- ..+..|.
T Consensus 311 ------~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~ 384 (472)
T KOG0634|consen 311 ------LFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPK 384 (472)
T ss_pred ------HHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCC
Confidence 4555555444 34557889999999999887554 67888888999999999999988 4553 3366899
Q ss_pred CceEEEEecCccccc---CCCCHHHHHHHHHHhcCeEEecCCCCCC------CC-eEEEEec-cChHHHHHHHHHHHHHH
Q 014603 347 GSMFVMVKLNYSLLE---GINSDMEFALKLAKEESVIVLPGITVGL------KD-WLRITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~~g~~~~~------~~-~iRis~~-~~~~~l~~~~~~l~~~~ 415 (422)
+|+|+|++++-..+. ...+..++....+.++||.+.+|..|.. .. ++|++++ .+.++++++++++..++
T Consensus 385 aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~i 464 (472)
T KOG0634|consen 385 AGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVI 464 (472)
T ss_pred cceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHH
Confidence 999999999722111 1113556677778889999999999854 23 8999999 78899999999999999
Q ss_pred HHhcc
Q 014603 416 DRHAK 420 (422)
Q Consensus 416 ~~~~~ 420 (422)
+++.+
T Consensus 465 ke~f~ 469 (472)
T KOG0634|consen 465 KEHFI 469 (472)
T ss_pred HHHhh
Confidence 88743
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=281.02 Aligned_cols=301 Identities=16% Similarity=0.243 Sum_probs=220.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+..++|+|+.+... ++ |+.+.+++.+.... ...|+. ...+|++++++++ ++|++|+|++++
T Consensus 6 ~~~~~i~l~~~~np----~~-p~~~~~a~~~~~~~--~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~a 66 (311)
T PRK08354 6 REEGLIDFSASVNP----YP-PEWLDEMFERAKEI--SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEA 66 (311)
T ss_pred CccceeEecCCCCC----CC-CHHHHHHHHHHHHH--hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHH
Confidence 45678999998633 33 47888888876543 346753 4789999999882 479999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+..++..+ .+||+|++++|+|..+...++..|.+++.++ +|++.+++.++ +++++++++|+||||.+++.
T Consensus 67 l~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~ 136 (311)
T PRK08354 67 LYLIGILA-LRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNF 136 (311)
T ss_pred HHHHHHhh-CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCH
Confidence 99888654 4899999999999999999999999886543 57888888776 46789999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+++|+++|+++|+||+|..+.+++.. . ..+++++++||||+|++||+|+||+++ +.
T Consensus 137 ~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~---~----~~~~vi~~~S~SK~~~l~GlRiG~~v~-----------~~ 198 (311)
T PRK08354 137 KELKPLLDAVEDRNALLILDEAFIDFVKKPES---P----EGENIIKLRTFTKSYGLPGIRVGYVKG-----------FE 198 (311)
T ss_pred HHHHHHHHHhhhcCcEEEEeCcchhccccccc---c----CCCcEEEEeccHhhcCCccceeeeeee-----------hH
Confidence 99999999999999999999999998775421 1 145789999999999999999999997 23
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.++..... ...+...+.++..+++. ...++.+.++.+.+.++.+.+.+ ...|. +.|+++.++
T Consensus 199 ~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~-~~~~~~~~~------ 261 (311)
T PRK08354 199 EAFRSVRMP-WSIGSTGYAFLEFLIED-DFEHLRKTMPLIWREKERFEKAL--------YVKSD-ANFFIKDVG------ 261 (311)
T ss_pred HHHHHcCCC-ccCCHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc--------CCCCC-CcEEEEECC------
Confidence 444444322 23444556666555552 22344444444444444443322 11345 445556553
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccC--hHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE--PSALEDGLGR 410 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~--~~~l~~~~~~ 410 (422)
++.++...+ .++||.|.||..|+.++++||+++.+ .+++..+++.
T Consensus 262 --~~~~~~~~l-~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~l~~al~~ 308 (311)
T PRK08354 262 --DAEKFVEFL-KRNGILVRDCTSFGLPGYIRFSVRDREENEKLIRALRE 308 (311)
T ss_pred --CHHHHHHHH-HHCCeEEEecccCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 356666665 56799999999998789999999853 3455555444
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=281.29 Aligned_cols=346 Identities=31% Similarity=0.535 Sum_probs=276.4
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVIL 127 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~ 127 (422)
|||+.|++. +..++.+..++.+.........|.+..+..++++.++++++...+....++++++++|+++++..++
T Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~ 76 (350)
T cd00609 1 IDLSIGEPD----FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLL 76 (350)
T ss_pred CCCCCCCCC----CCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 578888855 4566677676665222334457888899999999999999986665566789999999999999999
Q ss_pred HHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHH
Q 014603 128 TVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQK 207 (422)
Q Consensus 128 ~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~ 207 (422)
.++.++||+|+++.++|+++...++..|..++.++.+.......+.+.++....++++++++++|+||||..+|.+++++
T Consensus 77 ~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~ 156 (350)
T cd00609 77 RALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEE 156 (350)
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999865443322225666666778999999999999999999999999
Q ss_pred HHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh
Q 014603 208 IAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS 287 (422)
Q Consensus 208 i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
|+++|+++|+++|+|++|+.+.+.+.........+..+.+++++|++|.++.+|+|+|++++++ +++.+.++.
T Consensus 157 l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~-------~~~~~~~~~ 229 (350)
T cd00609 157 LAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPP-------EELLERLKK 229 (350)
T ss_pred HHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCH-------HHHHHHHHH
Confidence 9999999999999999999877655433212223333457999999999887999999999863 257777776
Q ss_pred hhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCH
Q 014603 288 FLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSD 366 (422)
Q Consensus 288 ~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 366 (422)
.... +.+++...+.++..+++... .+.++.++++.++++++.+.|++++... ...+..++++|+.++.. ..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~g~~~~~~~~~~------~~ 301 (350)
T cd00609 230 LLPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLV-VVKPSGGFFLWLDLPEG------DD 301 (350)
T ss_pred HHHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCCccEEEEEecCCC------Ch
Confidence 6543 35778888999888888643 6788888999999999999999985544 23667789999988643 24
Q ss_pred HHHHHHHHHhcCeEEecCCCCC--CCCeEEEEeccChHHHHHHHHHHH
Q 014603 367 MEFALKLAKEESVIVLPGITVG--LKDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 367 ~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
.+.+.++++++||.+.++..|. ...++||+++...+++++++++|+
T Consensus 302 ~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 302 EEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred HHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 5566777788899999988776 578999999955999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=238.62 Aligned_cols=367 Identities=24% Similarity=0.376 Sum_probs=263.9
Q ss_pred ccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHH----HHhhCC----CCCCCCCCCCCHHHHHHHH
Q 014603 26 ITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIV----HSVRSA----RFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~----~~~~~~----~~~~y~~~~g~~~lr~~ia 97 (422)
+.|+.+++.+...+ ..+..|.|+.|.|... |++.+..+ +-+..+ ....|..++|...|-++++
T Consensus 14 sGi~~lMdDl~d~L---rt~g~imLggGNPa~i------Pem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala 84 (417)
T COG3977 14 SGITQLMDDLNDGL---RTPGAIMLGGGNPARI------PEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALA 84 (417)
T ss_pred hhHHHHHHHHHhhc---cCCCceeeCCCCcccC------hhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHH
Confidence 35777777777666 3455999999997642 44444433 333322 3458998999999999999
Q ss_pred HHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC---CC--CEEEec-CCCccchHHHHhhCCCeEEE---eeccCCC-
Q 014603 98 DYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR---PG--ANILLP-RPGFPYYEARATHSHLEVRH---FDLLPAK- 167 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~---~g--d~Vl~~-~~~~~~~~~~~~~~g~~~~~---~~~~~~~- 167 (422)
.++++.+|+++.+++|.+|+|++.+.+.++..+.. .| .+|+.+ .|.|-+|..+...-..-+.. +.+.+.+
T Consensus 85 ~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~ 164 (417)
T COG3977 85 KMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQ 164 (417)
T ss_pred HHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccc
Confidence 99999999999999999999999999999887742 34 356665 89998886543322211111 1122222
Q ss_pred -CcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC
Q 014603 168 -GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246 (422)
Q Consensus 168 -~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (422)
.|.+|.+.+. +.+.+.+++++-|.||||.+++.+++.+|..++++||+.+|+|.+|+.- |-+-.+.++.. .-.++
T Consensus 165 FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd~~~-~w~~N 240 (417)
T COG3977 165 FKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSDATP-LWNEN 240 (417)
T ss_pred eeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceecccccc-cCCCC
Confidence 2556766654 3457888999999999999999999999999999999999999999741 22222222221 23467
Q ss_pred eEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHH-HH-HHHHHH
Q 014603 247 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFF-SK-ITDILR 323 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~-~~-~~~~~~ 323 (422)
++.+.|+||. |+||.|+|.++++ ++++..+..... .+..|....++.+..+++...-..+ ++ ++.-++
T Consensus 241 iilC~SLSK~-GLPG~R~GIiIan--------e~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~ 311 (417)
T COG3977 241 IILCMSLSKL-GLPGSRCGIIIAN--------EKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYR 311 (417)
T ss_pred EEEEeehhhc-CCCCcceeEEEcc--------HHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHH
Confidence 9999999999 9999999999985 577777766553 2346777888888888887541111 22 223455
Q ss_pred HHHHHHHHHhhc-CCC--CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---------CC
Q 014603 324 ETADICCDRLKE-IPC--ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KD 391 (422)
Q Consensus 324 ~~~~~l~~~L~~-~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------~~ 391 (422)
++.+...+.|+. +|. +. .+.|+++.|+|+-+.+... +..++..+| ++.||++.||+.|-. ..
T Consensus 312 ~~~q~~~~~l~~~lp~~~~~-iHkpEGAIFlWLWf~dLPI----tt~~LYq~L-Ka~Gvl~VPG~~FFpGl~~ewpH~hq 385 (417)
T COG3977 312 NRVQTTIAILRRYLPEYRCL-IHKPEGAIFLWLWFKDLPI----TTEELYQRL-KARGVLMVPGHYFFPGLDKEWPHTHQ 385 (417)
T ss_pred HHHHHHHHHHHHhcCcccee-eecCCcceeehhhhccCCC----CHHHHHHHH-HhCeEEEecccccCCCCCCCCCCccc
Confidence 555555555554 333 33 4589999999997765321 566776665 777999999998753 47
Q ss_pred eEEEEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 392 WLRITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 392 ~iRis~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
++|+++..+++++++++.+|.+.+++.-+
T Consensus 386 C~Rmn~~~~~~~ie~Gva~lae~ve~~yq 414 (417)
T COG3977 386 CMRMNYVPEPEKIEKGVAILAEEVERAYQ 414 (417)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999877543
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=268.78 Aligned_cols=333 Identities=16% Similarity=0.157 Sum_probs=248.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CCCC-------CCCCHHHHHHHHHHHhhcCCCCC-CCCCEEE
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CYSS-------TVGILPARRAIADYLNRDLPYKL-SPDDVYL 115 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y~~-------~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~ 115 (422)
.+.++|+++..+ ++|+.+.+++.+.+.....+ .... ...++++|+.+++++ ++ ++++|++
T Consensus 18 ~~~~yld~a~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~i~~ 86 (401)
T PRK10874 18 DAGVYLDSAATA-----LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL------NAPDAKNIVW 86 (401)
T ss_pred CceEEEeCCccc-----CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc------CCCCCCEEEE
Confidence 457999999865 56788999998888642111 0000 123668888899988 44 6789999
Q ss_pred ecCHHHHHHHHHHHh----cCCCCEEEecCCCccc----hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 116 TLGCTQAIEVILTVL----ARPGANILLPRPGFPY----YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
|+|+|++++.+++++ .++||+|++++++|++ +...++..|.+++.++.+. ++.+|++++++.++++++++
T Consensus 87 ~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv 164 (401)
T PRK10874 87 TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITPRTRIL 164 (401)
T ss_pred ECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCcCcEEE
Confidence 999999999999997 3789999999999864 4566678899999998753 45689999999998899999
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
++++|+||||.+++ +++|.++|+++|+++|+|++|+... ...++..++.+ +++.|++|.++.+| +|++
T Consensus 165 ~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~----~~~~~~~~~~d---~~~~s~~K~~gp~G--~G~l 232 (401)
T PRK10874 165 ALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVH----FPADVQALDID---FYAFSGHKLYGPTG--IGVL 232 (401)
T ss_pred EEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCccccc----ccCCchhcCCC---EEEEecccccCCCc--cEEE
Confidence 99999999999965 6788888899999999999997522 22333334333 88899999887777 6888
Q ss_pred EeeCCCCcccchhHHHHHHhhh----------------------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 268 VTSDPNGILQDSGIVDSIKSFL----------------------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
+++ +++++.+.... ...++++...+.++.++++...+....+..++.+++
T Consensus 233 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l 304 (401)
T PRK10874 233 YGK--------SELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSL 304 (401)
T ss_pred EEc--------hHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 875 34444443211 112466667777777777654445566678888899
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC--------CCCeEEEEe
Q 014603 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--------LKDWLRITF 397 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--------~~~~iRis~ 397 (422)
++++.+.|+++|++.+. .+..+.++++.++.. +..++...| .++||.+.+|..|. ..+++|||+
T Consensus 305 ~~~l~~~l~~~~g~~~~-~~~~~~i~~~~~~~~------~~~~~~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~ 376 (401)
T PRK10874 305 ATLAEDALAKLPGFRSF-RCQDSSLLAFDFAGV------HHSDLVTLL-AEYGIALRAGQHCAQPLLAALGVTGTLRASF 376 (401)
T ss_pred HHHHHHHHhcCCCEEEe-CCCCCcEEEEEECCc------CHHHHHHHH-HHCCcEEeccccchHHHHHHhCCCCEEEEEe
Confidence 99999999998887744 333344555566431 455666554 66799999988663 358999999
Q ss_pred c--cChHHHHHHHHHHHHHHHHh
Q 014603 398 A--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 398 ~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+ ++++|++++++.|+++++.+
T Consensus 377 ~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 377 APYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred cccCCHHHHHHHHHHHHHHHHHh
Confidence 8 78999999999999988764
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=266.24 Aligned_cols=333 Identities=16% Similarity=0.168 Sum_probs=248.0
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CCCCC-------CCCHHHHHHHHHHHhhcCCCCC-CCCCEEE
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CYSST-------VGILPARRAIADYLNRDLPYKL-SPDDVYL 115 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y~~~-------~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~ 115 (422)
++.|+|+++..+ ++|+.+.+++.+.+.....+ .+... ..++++|+.++++++ . ++++|++
T Consensus 15 ~~~iyld~a~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~i~~ 83 (398)
T TIGR03392 15 DGTVYLDSAATA-----LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLN------APDAENIVW 83 (398)
T ss_pred CCeEEeeCcccc-----CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEE
Confidence 468999999865 56789999998887532111 12221 235678999999984 4 4689999
Q ss_pred ecCHHHHHHHHHHHh----cCCCCEEEecCCCccc----hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 116 TLGCTQAIEVILTVL----ARPGANILLPRPGFPY----YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
|+|+|++++.++.++ +++||+|++++++|++ +...++..|.+++.++.+. ++.+|++.+++.++++++++
T Consensus 84 t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~~i~~~t~lv 161 (398)
T TIGR03392 84 TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA--DLLPDIRQLPELLTPRTRIL 161 (398)
T ss_pred eCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHHhccCceEE
Confidence 999999999999987 4789999999999865 4556678899999998753 35689999999998899999
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
++++|+||||.+++ +++|.++|+++|+++|+|++|+... ...++...+.+ +++.|++|.++.+| +|++
T Consensus 162 ~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~----~~~~~~~~~~d---~~~~s~~K~~gp~G--~G~l 229 (398)
T TIGR03392 162 ALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVH----GPPDVQALDID---FYAFSGHKLYGPTG--IGVL 229 (398)
T ss_pred EEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCC----CCCChhhcCCC---EEEEecccccCCCc--eEEE
Confidence 99999999999965 6778888999999999999997532 22233333333 77889999877666 8999
Q ss_pred EeeCCCCcccchhHHHHHHhhh----------------------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 268 VTSDPNGILQDSGIVDSIKSFL----------------------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
+.+ +++++++.... ...++++.....++.++++...+..+++..++.+++
T Consensus 230 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l 301 (398)
T TIGR03392 230 YGK--------TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSL 301 (398)
T ss_pred EEc--------HHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 876 34444443211 112466666777777777654445566778888999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC--------CCCeEEEEe
Q 014603 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--------LKDWLRITF 397 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--------~~~~iRis~ 397 (422)
++++.+.|++++++.+...+. ..++++.++.. +..++...| .++||.+.+|..|. ..+++|+|+
T Consensus 302 ~~~l~~~l~~l~g~~~~~~~~-~~i~~~~~~~~------~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~ 373 (398)
T TIGR03392 302 ADLAEERLAQLPGFRSFRCPG-SSLLAFDFAGV------HHSDLAALL-AESGIALRAGQHCAQPLMAALGVSGTLRASF 373 (398)
T ss_pred HHHHHHHHhcCCCeEEeCCCC-CcEEEEEeCCc------CHHHHHHHH-HhCCEEEecCccchHHHHHHhCCCCEEEEEe
Confidence 999999999988876332333 44555555431 456666665 66799999998663 357999999
Q ss_pred c--cChHHHHHHHHHHHHHHHHh
Q 014603 398 A--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 398 ~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+ ++++|++++++.|+++++++
T Consensus 374 ~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 374 APYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred eccCCHHHHHHHHHHHHHHHHHh
Confidence 8 78999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=269.40 Aligned_cols=367 Identities=18% Similarity=0.128 Sum_probs=261.9
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcH---HHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTAS---VAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~---~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
|+....++.+..+.++..+. +.++.++++|.+|+|. ..+++++ .+.+++.+.+..+ ...|.+..+.++||++
T Consensus 12 r~~~v~~~~~~~~~~~~~~l--~~~g~~~~~L~~g~p~--~D~~tds~t~a~~~a~~~a~~~g-~~~Y~~~~g~~~Lrea 86 (460)
T PRK13238 12 RIKMVEPIRLTTREERERAL--AEAGYNPFLLKSEDVF--IDLLTDSGTGAMSDRQWAAMMRG-DEAYAGSRSYYRLEDA 86 (460)
T ss_pred eeceeccccccCHHHHHHHH--HHcCCCEEeCCCCCCC--CCCCCCCCchhhhHHHHHHHHhC-CcccCCCCCHHHHHHH
Confidence 34455555555555444332 1258899999999984 1245544 5777777777654 3589999999999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC------CCc
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA------KGW 169 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~ 169 (422)
++++++ .+++++|+|+++|+.+++.+++++|| |++++|.|..+.......|.+++.+++++. ++|
T Consensus 87 ia~~~~--------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f 157 (460)
T PRK13238 87 VKDIFG--------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPF 157 (460)
T ss_pred HHHHhC--------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccc
Confidence 999993 35799999999999999999999999 999999999998888999999999988542 234
Q ss_pred c--cCHHHHHHhhcC----CceEEEEeCCCCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccc--cccCC-----CCC
Q 014603 170 E--VDLDAVEALADE----NTVALVIINPGNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDH--LAFGN-----TPF 235 (422)
Q Consensus 170 ~--~d~~~l~~~~~~----~~~~i~i~~p~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~--~~~~~-----~~~ 235 (422)
. +|++.|++.+++ +++++++++|+||+| .+++.+++++|.++|++||++||+|+++.. ..|.. ...
T Consensus 158 ~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~ 237 (460)
T PRK13238 158 KGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKD 237 (460)
T ss_pred cCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccC
Confidence 4 999999999873 689999999999997 899999999999999999999999997742 22211 111
Q ss_pred CCccccC----CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-----h-hccCcchHHHHHHHH
Q 014603 236 VPMGVFG----SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-----N-ISSDPATFIQGAVPQ 305 (422)
Q Consensus 236 ~~~~~~~----~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~a~~~ 305 (422)
.++..+. ... -++..|..|...++ . .|++++++ +++.++++... . ..++.+...|.|+..
T Consensus 238 ~si~~i~~~~~s~~-D~~~~Sg~K~g~~~-~-GG~i~~~d-------~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~ 307 (460)
T PRK13238 238 KSIKEIAREMFSYA-DGLTMSAKKDAMVN-I-GGLLCFRD-------EDLFTECRTLCILYEGFPTYGGLAGRDMEALAV 307 (460)
T ss_pred CCHHHHhhhhcccC-cEEEEecccCCCCc-c-eeEEEcCh-------HHHHHHhhhcccccCCcccccCcHHHHHHHHHh
Confidence 1221110 000 13334455542222 1 25666653 46777776653 1 122334455777777
Q ss_pred HHhhc-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc--cc--CCCCHHHHHHHHHHhcCeE
Q 014603 306 ILEKT-EEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--LE--GINSDMEFALKLAKEESVI 380 (422)
Q Consensus 306 ~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~gi~ 380 (422)
.|.+. .+.++..+ .+++++|.+.|++. |+. +..|.+|+++++.+.... .+ +. .+.+++.+|+++.||.
T Consensus 308 ~l~e~~~~~~~~~~----~~~~~~l~~~L~~~-G~~-~~~p~Gg~~v~~d~~~~~~~~~~~~~-~~~~~a~~L~~e~GV~ 380 (460)
T PRK13238 308 GLYEGMDEDYLAYR----IGQVEYLGEGLEEA-GVP-IQTPAGGHAVFVDAGKFLPHIPAEQF-PAQALACELYLEAGIR 380 (460)
T ss_pred hHHHhhChHHHHHH----HHHHHHHHHHHHHC-CCC-eEccCCceEEEEEchhcCCCCCCCCC-chHHHHHHHHHHcCee
Confidence 77642 23444443 33568888999887 888 448999999998875320 00 11 3577899999999999
Q ss_pred EecCCCCCC-------------CCeEEEEecc---ChHHHHHHHHHHHHHHH
Q 014603 381 VLPGITVGL-------------KDWLRITFAV---EPSALEDGLGRMKAFYD 416 (422)
Q Consensus 381 v~~g~~~~~-------------~~~iRis~~~---~~~~l~~~~~~l~~~~~ 416 (422)
+.|++.|.. .+.+|++++. +.+.++.+.++|+...+
T Consensus 381 ~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 381 GVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred eecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 999886642 3689999984 89999999999998663
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=255.54 Aligned_cols=345 Identities=22% Similarity=0.263 Sum_probs=272.2
Q ss_pred HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC----CCCC----CCCCHHHHHHHHHH
Q 014603 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN----CYSS----TVGILPARRAIADY 99 (422)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~y~~----~~g~~~lr~~ia~~ 99 (422)
+|..++.+.+.. +.++++|++...+ +.|..+.+++.+.+.....+ .|.. ...+++.|++++++
T Consensus 8 ~r~~fp~l~~~~----~~~~vylD~aa~~-----~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~ 78 (405)
T COG0520 8 VRADFPALKREV----GKPLVYLDNAATS-----QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARF 78 (405)
T ss_pred HHhhCHHHhhcc----CCCeEEecCcccc-----cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 667776665543 6788999998865 47789999999887532111 1111 12467889999999
Q ss_pred HhhcCCCCCC-CCCEEEecCHHHHHHHHHHHh---cCCCCEEEecCCCccc----hHHHHhhCCCeEEEeeccCCCCccc
Q 014603 100 LNRDLPYKLS-PDDVYLTLGCTQAIEVILTVL---ARPGANILLPRPGFPY----YEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 100 l~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
++ .+ .++|+||+|+|++++.+..++ .++||+|++..-.|++ |...++..|++++.+|++ +++.+
T Consensus 79 ~~------a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~ 150 (405)
T COG0520 79 LN------ADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLL 150 (405)
T ss_pred hC------CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCc
Confidence 94 46 489999999999999999998 6899999999999964 566777779999999986 44568
Q ss_pred CHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 172 DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 172 d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
+.+.++..++++|+++.+++.+|.||++ .++++|+++|+++|+++++|.+|+. ++.+.++..++.| ++++
T Consensus 151 ~~~~~~~~i~~~Tklvais~vSn~tG~~---~pv~~I~~la~~~ga~v~VDaaq~~----~h~~idv~~l~~D---f~af 220 (405)
T COG0520 151 DLDALEKLITPKTKLVALSHVSNVTGTV---NPVKEIAELAHEHGALVLVDAAQAA----GHLPIDVQELGCD---FLAF 220 (405)
T ss_pred CHHHHHHhcCCCceEEEEECcccccccc---chHHHHHHHHHHcCCEEEEECcccc----CccCCCchhcCCC---EEEE
Confidence 9999999999999999999999999999 5799999999999999999999987 6677788888876 9999
Q ss_pred cCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhh-----------------------hhhccCcchHHHHHHHHHH
Q 014603 252 SISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSF-----------------------LNISSDPATFIQGAVPQIL 307 (422)
Q Consensus 252 s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~a~~~~l 307 (422)
|.+|++++| | +|+++++ +++.+.+.+. ....++++.....++.+++
T Consensus 221 sgHKwl~gP~G--iGvLy~r--------~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl 290 (405)
T COG0520 221 SGHKWLLGPTG--IGVLYVR--------KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAAL 290 (405)
T ss_pred cccccccCCCc--eEEEEEc--------hHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHH
Confidence 999955555 6 8999886 4566666321 1123466666677777778
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC
Q 014603 308 EKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 385 (422)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 385 (422)
+...+..++++.++.+++.+++.+.|+++|++.+...+. .+..+.+.++.. ++.++...| .++||.++.|.
T Consensus 291 ~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~------~~~dv~~~L-~~~gI~vr~g~ 363 (405)
T COG0520 291 DYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI------HPHDVATLL-DEKGIAVRAGH 363 (405)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC------CHHHHHHHH-HhCCeEEEecc
Confidence 766667789999999999999999999999988554332 344555666542 577777776 55689999999
Q ss_pred CCCC--------CCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 386 TVGL--------KDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 386 ~~~~--------~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
.|.. ...+|+|++ ++++||+++++.|+++.+
T Consensus 364 ~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 364 HCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred ccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 8864 455999998 899999999999998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=265.02 Aligned_cols=349 Identities=14% Similarity=0.144 Sum_probs=250.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|+++|||++++. +++..+|++.+++.+++++... ..|++..++.+++++++++++ .++.|+++
T Consensus 107 ~G~~~id~~s~~~---lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s 176 (481)
T PLN02822 107 NGKDVVNFASANY---LGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYS 176 (481)
T ss_pred CCceEEEeECCCc---CCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEEC
Confidence 5788999999873 3466789999999999986221 145666678999999999994 34678888
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh--cCCc-eEEEEeCCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA--DENT-VALVIINPG 193 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~-~~i~i~~p~ 193 (422)
+|++ ++..++.+++++||.|++...+|..+.......+.+++.++.++.+++..+++++++.. .+++ +++++..++
T Consensus 177 ~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~ 255 (481)
T PLN02822 177 YGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIY 255 (481)
T ss_pred CHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCC
Confidence 7776 67889999999999999998888887778888888888887643322322333332221 1234 566777778
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC--CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG--NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
+++|.+++ +++|+++|++||+++|+||+|+...++ |.+......+...+..+++.||||.|++.| ||++++
T Consensus 256 ~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~- 328 (481)
T PLN02822 256 QNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---GFCTGS- 328 (481)
T ss_pred CCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcC-
Confidence 89999976 788999999999999999999966554 332211111211234588999999998888 999986
Q ss_pred CCCcccchhHHHHHHhhh-hhcc--CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 272 PNGILQDSGIVDSIKSFL-NISS--DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
+++++.++... ...+ +.++..+.++.++|+... . ..+..++++++++.+++.|++++++. +..+..+
T Consensus 329 -------~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~-~-~~~~~~~l~~~~~~l~~~L~~~~g~~-~~~~~~s 398 (481)
T PLN02822 329 -------ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-D-NPSVLAKLKENIALLHKGLSDIPGLS-IGSNTLS 398 (481)
T ss_pred -------HHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHH-h-CHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCC
Confidence 46777766433 2222 334667778777886532 2 25677899999999999999987777 3356678
Q ss_pred eEEEEecCcccccCCC-C---HHHHHHHHHHhcCeEEecCCC--CCC---CCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYSLLEGIN-S---DMEFALKLAKEESVIVLPGIT--VGL---KDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~~gi~v~~g~~--~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
+++++.++... .... + ..+++.++++++||.+.|+.. ++. +.++|++++ +++++|++++++|++++.+
T Consensus 399 pi~~l~l~~~~-~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 399 PIVFLHLEKST-GSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred CEEEEEeCCCc-ccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 88888886320 0000 1 256778887678999998743 321 357999887 8999999999999999887
Q ss_pred hcc
Q 014603 418 HAK 420 (422)
Q Consensus 418 ~~~ 420 (422)
...
T Consensus 478 ~~~ 480 (481)
T PLN02822 478 VLK 480 (481)
T ss_pred Hhc
Confidence 643
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=260.43 Aligned_cols=336 Identities=17% Similarity=0.216 Sum_probs=248.6
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-----CCCC---CCCCHHHHHHHHHHHhhcCCCCCC-CCCEE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-----CYSS---TVGILPARRAIADYLNRDLPYKLS-PDDVY 114 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~y~~---~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~ 114 (422)
+.++++|+++.++ ++|+.+.+++.+.+.....+ .|.. ...+.++|+.++++++ .. +++|+
T Consensus 30 ~~~~iyLd~a~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~ 98 (424)
T PLN02855 30 GSKLVYLDNAATS-----QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN------ASTSREIV 98 (424)
T ss_pred CCCeEEeeCcccc-----CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC------CCCCCEEE
Confidence 4578999998855 56788999998877542111 1111 1224688899999984 33 57999
Q ss_pred EecCHHHHHHHHHHHh----cCCCCEEEecCCCccc----hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceE
Q 014603 115 LTLGCTQAIEVILTVL----ARPGANILLPRPGFPY----YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186 (422)
Q Consensus 115 ~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 186 (422)
+|+|+|++++.+++++ +++||+|+++.++|++ |...++..|.+++.+++++. ..+|++.+++.+++++++
T Consensus 99 ~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~~t~l 176 (424)
T PLN02855 99 FTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD--EVLDVEQLKELLSEKTKL 176 (424)
T ss_pred EeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC--CCcCHHHHHHHhccCceE
Confidence 9999999999998863 5789999999998864 45566778999999987543 348999999999889999
Q ss_pred EEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEE
Q 014603 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 187 i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
+++++++||||.++| +++|.++|+++|+++|+|++|+. |....++..++.+ +++.|++|.++.+| +|+
T Consensus 177 v~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~----g~~~~~~~~~~~d---~~~~s~~K~~gp~G--~G~ 244 (424)
T PLN02855 177 VATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV----PHMPVDVQTLGAD---FLVASSHKMCGPTG--IGF 244 (424)
T ss_pred EEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCCchhcCCC---EEEeecccccCCCc--cEE
Confidence 999999999999976 56778889999999999999964 3333344444433 78999999866566 899
Q ss_pred EEeeCCCCcccchhHHHHHHhh----------------------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 014603 267 LVTSDPNGILQDSGIVDSIKSF----------------------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRE 324 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 324 (422)
+++++ ++++++... ....++++....+++.++++...+.++++..++..+
T Consensus 245 l~~~~--------~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~ 316 (424)
T PLN02855 245 LWGKS--------DLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVE 316 (424)
T ss_pred EEEch--------hhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 98863 333333211 111345666777777777875555678888999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCC------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC--------CC
Q 014603 325 TADICCDRLKEIPCITCPKKPE------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--------LK 390 (422)
Q Consensus 325 ~~~~l~~~L~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--------~~ 390 (422)
+++.+++.|++++++.+. .+. .+.++.+.++.. +..++...|.+++||.+..|..|. .+
T Consensus 317 l~~~l~~~L~~~~g~~i~-~~~~~~~~~r~~~v~~~~~~~------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~ 389 (424)
T PLN02855 317 LGTYLYEKLSSVPGVRIY-GPKPSEGVGRAALCAFNVEGI------HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVN 389 (424)
T ss_pred HHHHHHHHHhcCCCEEEe-CCCcccccCcccEEEEEECCc------CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCC
Confidence 999999999998887744 321 134555666531 456676766555599999887653 35
Q ss_pred CeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 391 DWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 391 ~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+++|+|++ ++++|++++++.|+++++.++
T Consensus 390 ~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 390 ASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred CeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999998 789999999999999987754
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=258.96 Aligned_cols=332 Identities=17% Similarity=0.185 Sum_probs=246.5
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC-C-------CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS-S-------TVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~-------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
.++|+|+++..+ ++++.+.+++.+.+.....+... . ...++++|+.++++++. .++++|++|
T Consensus 22 ~~~iYld~a~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-----~~~~~v~~t 91 (406)
T PRK09295 22 LPLAYLDSAASA-----QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA-----RSAEELVFV 91 (406)
T ss_pred CceEEEeCcccc-----cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc-----CCCCeEEEe
Confidence 468999999865 67789999999888642211111 1 12256888889998842 157899999
Q ss_pred cCHHHHHHHHHHH----hcCCCCEEEecCCCccc----hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEE
Q 014603 117 LGCTQAIEVILTV----LARPGANILLPRPGFPY----YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV 188 (422)
Q Consensus 117 ~g~~~a~~~~~~~----l~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~ 188 (422)
+|+|++++.++.+ ++++||+|++++++|++ +...++..|++++.++.++ ++.+|++.|++.+++++++++
T Consensus 92 ~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~ 169 (406)
T PRK09295 92 RGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPALFDERTRLLA 169 (406)
T ss_pred CCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCCCHHHHHHhcCCCcEEEE
Confidence 9999999999886 45789999999998864 4556677899999998753 345899999999988999999
Q ss_pred EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 189 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
+++|+||||.++| +++|.++|+++|+++++|++|+. +....++...+.+ +++.|++|.++.+| +|+++
T Consensus 170 l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~G--~G~l~ 237 (406)
T PRK09295 170 ITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAV----MHHPVDVQALDCD---FYVFSGHKLYGPTG--IGILY 237 (406)
T ss_pred EecchhcccccCC---HHHHHHHHHHcCCEEEEEccccc----CccccCchhcCCC---EEEeehhhccCCCC--cEEEE
Confidence 9999999999975 67788889999999999999976 3333344444443 88899999877666 79998
Q ss_pred eeCCCCcccchhHHHHHHh-----------------------hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 269 TSDPNGILQDSGIVDSIKS-----------------------FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
+++ ++++.+.. .....++++.....++.++++...+..++...++.+++
T Consensus 238 ~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l 309 (406)
T PRK09295 238 VKE--------ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNL 309 (406)
T ss_pred Ech--------HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 863 33333221 11123477778888888888765555678888899999
Q ss_pred HHHHHHHhhcCCCCCCCCCCC-CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--------CCeEEEE
Q 014603 326 ADICCDRLKEIPCITCPKKPE-GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRIT 396 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------~~~iRis 396 (422)
++++.+.|++++++.+. .|. ....+.+.++.. +..++... +.++||.+..|..|.. ++.+|+|
T Consensus 310 ~~~l~~~l~~~~~~~~~-~~~~~~~iv~~~~~~~------~~~~~~~~-L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS 381 (406)
T PRK09295 310 MHYALSQLESVPDLTLY-GPQNRLGVIAFNLGKH------HAYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRAS 381 (406)
T ss_pred HHHHHHHHhcCCCEEEe-CCCCCceEEEEEECCc------CHHHHHHH-HHhCCeEEeccccchHHHHHHHCCCCEEEEE
Confidence 99999999998887744 332 122344445431 45566554 5778999999886642 4689999
Q ss_pred ec--cChHHHHHHHHHHHHHHH
Q 014603 397 FA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 397 ~~--~~~~~l~~~~~~l~~~~~ 416 (422)
++ ++++|++++++.|+++..
T Consensus 382 ~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 382 LAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred ccCCCCHHHHHHHHHHHHHHHH
Confidence 98 789999999999988653
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=248.25 Aligned_cols=309 Identities=17% Similarity=0.175 Sum_probs=228.8
Q ss_pred CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEE
Q 014603 58 FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANI 137 (422)
Q Consensus 58 ~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~V 137 (422)
|.++..+|.+.++..+.++... ++...+.++++.+|+++ +++++++++++|+++|+..++.+++++||.|
T Consensus 29 ylgl~~~~~~~~~~~~~~~~~~----g~~~~~~~Le~~lA~~~------g~~~e~ilv~~gg~~a~~~~~~al~~~gd~V 98 (346)
T TIGR03576 29 LTGLAGGFKIDEEDLELLETYV----GPAIFEEKVQELGREHL------GGPEEKILVFNRTSSAILATILALEPPGRKV 98 (346)
T ss_pred cccCCCChhHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHc------CCCcceEEEECCHHHHHHHHHHHhCCCCCEE
Confidence 4556677899998888876521 22344678888888887 5678999999999999999999999999999
Q ss_pred Eec---CCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 138 LLP---RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 138 l~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
+++ .|+|..+...++..|.++... .+++.++. .++++++++ ++.+++|.+++.+++++|+++|++
T Consensus 99 li~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~ 166 (346)
T TIGR03576 99 VHYLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK--IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKS 166 (346)
T ss_pred EECCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh--CcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHH
Confidence 975 578888888999888875322 13444433 245676666 457899999999999999999999
Q ss_pred cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-cc
Q 014603 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SS 293 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 293 (422)
+|+++|+||+|+.+........+...++. + +++.|+|| +++|+|+||++++ +++++.+...... ..
T Consensus 167 ~~~~livDEAy~~~~~~~~~~~~~~~~~~--d-ivv~s~SK--alaG~r~G~v~~~--------~~li~~l~~~~~~~~~ 233 (346)
T TIGR03576 167 KEAIVLVDDASGARVRRLYGQPPALDLGA--D-LVVTSTDK--LMDGPRGGLLAGR--------KELVDKIKSVGEQFGL 233 (346)
T ss_pred cCCEEEEECCccccccccCCCCCHHHcCC--c-EEEeccch--hccccceEEEEeC--------HHHHHHHHHhhcCccc
Confidence 99999999999875432111112222222 2 67789999 4789999999986 5788888876643 23
Q ss_pred CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHH
Q 014603 294 DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL 373 (422)
Q Consensus 294 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 373 (422)
+.+++.++++.++|+... .+..++.++++++.+.+.++++ . + .|..+.|+|++++.. ++.+++..+
T Consensus 234 s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~~---~-~-~~~~~~f~~~~~~~~------~~~~~~~~l 299 (346)
T TIGR03576 234 EAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDKL---N-V-ERTPTGFVIKGVEEE------KLIEIGLDL 299 (346)
T ss_pred CccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhC---C-C-CcCCCeEEEEeCCCC------CHHHHHHHH
Confidence 457778899888887532 3456677888888888877753 3 2 233445899888631 345677888
Q ss_pred HHhcCeEEecCCCCC-CCCeEEEEeccChH---HHHHHHHHHHHHH
Q 014603 374 AKEESVIVLPGITVG-LKDWLRITFAVEPS---ALEDGLGRMKAFY 415 (422)
Q Consensus 374 ~~~~gi~v~~g~~~~-~~~~iRis~~~~~~---~l~~~~~~l~~~~ 415 (422)
++++||.++||..|. .++++|||++++++ +.+++++.|++.+
T Consensus 300 l~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 300 LRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred HHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 899999999998773 47899999997765 8888888887654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=255.04 Aligned_cols=335 Identities=19% Similarity=0.232 Sum_probs=245.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC-C-------CCCCHHHHHHHHHHHhhcCCCCCC-CCCE
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS-S-------TVGILPARRAIADYLNRDLPYKLS-PDDV 113 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~-------~~g~~~lr~~ia~~l~~~~~~~~~-~~~i 113 (422)
.+.+++.|+++..+ ++|+.+.+++.+.+.....+... . ...++++|+.++++++ .+ +++|
T Consensus 15 ~~~~~~yld~~~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~------~~~~~~v 83 (403)
T TIGR01979 15 NGKPLVYLDSAATS-----QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN------AASDEEI 83 (403)
T ss_pred CCCceEEEeCcccc-----CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------cCCCCeE
Confidence 35678999999855 56788999998876542111110 0 1245688999999984 44 6799
Q ss_pred EEecCHHHHHHHHHHHh----cCCCCEEEecCCCccch----HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCce
Q 014603 114 YLTLGCTQAIEVILTVL----ARPGANILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 185 (422)
++++|++++++.++.++ .++||+|+++++.|++. ...++..|.+++.++.+ .++.+|++.+++.++++++
T Consensus 84 ~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~~~~ 161 (403)
T TIGR01979 84 VFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLTEKTK 161 (403)
T ss_pred EEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhccCCe
Confidence 99999999999998875 57899999999988653 45566789999999875 3456899999999988999
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeE
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 265 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G 265 (422)
++++++++||||..++ +++|.++|+++|+++|+|++|+. +....++..++. .+++.|++|.++.+| +|
T Consensus 162 lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~----g~~~~~~~~~~~---d~~~~s~~K~~gp~G--~g 229 (403)
T TIGR01979 162 LVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAV----PHMPVDVQALDC---DFYVFSGHKMYGPTG--IG 229 (403)
T ss_pred EEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhc----CccccCccccCC---CEEEEecccccCCCC--ce
Confidence 9999999999999976 77888889999999999999975 222233333333 388999999887666 88
Q ss_pred EEEeeCCCCcccchhHHHHHHhh----------------------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014603 266 WLVTSDPNGILQDSGIVDSIKSF----------------------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323 (422)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 323 (422)
++++++ ++.+.+... ....++++.....++.++++...+...+...++..
T Consensus 230 ~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~ 301 (403)
T TIGR01979 230 VLYGKE--------ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEH 301 (403)
T ss_pred EEEEch--------HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 988753 343433211 00123566667777777776544445677888999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCC----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC--------CCCC
Q 014603 324 ETADICCDRLKEIPCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV--------GLKD 391 (422)
Q Consensus 324 ~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~ 391 (422)
++++.+.+.|++++++.+. .|. .+.++.+.++.. +..++.. .++++||.+.+|..| +..+
T Consensus 302 ~l~~~l~~~l~~~~g~~~~-~~~~~~~~~~~v~~~~~~~------~~~~~~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~ 373 (403)
T TIGR01979 302 ELTAYALERLGEIPGLRIY-GPRDAEDRGGIISFNVEGV------HPHDVGT-ILDEEGIAVRSGHHCAQPLMRRFGVPA 373 (403)
T ss_pred HHHHHHHHHHhcCCCEEEe-CCCCccccCceEEEEeCCc------CHHHHHH-HHhhCCEEEcchhhhhHHHHHHhCCCC
Confidence 9999999999988887743 332 133555555431 3455655 456789999987633 3467
Q ss_pred eEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 392 WLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 392 ~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
++|||++ ++++|++++++.|+++++.+
T Consensus 374 ~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 374 TCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 8999998 68899999999999887654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=251.09 Aligned_cols=332 Identities=16% Similarity=0.173 Sum_probs=235.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCC---CC----HHHHHHHHHHHhhcCCCCCCCCCEEE
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTV---GI----LPARRAIADYLNRDLPYKLSPDDVYL 115 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---g~----~~lr~~ia~~l~~~~~~~~~~~~i~~ 115 (422)
+++++|||+.++ +++++.+|++++++.+.+.... ..|++.. |. .++|+.+|++++ .+++++
T Consensus 36 ~g~~~i~~~~~~---~lg~~~~~~v~~~~~~~~~~~~-~~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii 103 (393)
T TIGR01822 36 DGREVLNFCANN---YLGLSSHPDLIQAAKDALDEHG-FGMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTIL 103 (393)
T ss_pred CCceEEEeeCCC---ccccCCCHHHHHHHHHHHHHhC-CCCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEE
Confidence 578899999997 3457888999999999887632 2555544 64 789999999983 246777
Q ss_pred ecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEE
Q 014603 116 TLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVI 189 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i 189 (422)
++|+++|+..++.+++++||.|++++++|+++...++..+...+.++ ..|++.+++.+++ +++++++
T Consensus 104 ~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~ 176 (393)
T TIGR01822 104 YASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIAT 176 (393)
T ss_pred ECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEE
Confidence 88999999999999999999999999999999888877776654332 2688888887763 6777777
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC-CCeEEEecCccccCCCCceeEEEE
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
.+++||||.+. ++++|+++|++||+++|+|++|+...............+.. +..++++|+||++ +|+|.||++
T Consensus 177 ~~v~~~tG~~~---~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~~~ 251 (393)
T TIGR01822 177 DGVFSMDGVIA---PLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKAL--GGASGGFTT 251 (393)
T ss_pred eCCccCCCCcC---CHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHh--hCCCcEEEE
Confidence 78899999995 57888999999999999999996432221111111111111 2358889999985 467899998
Q ss_pred eeCCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++ +++++.+..... ..++.++..+.++.++++.. ...++.+++++++++++.+.|++. ++.+. .+
T Consensus 252 ~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~ 319 (393)
T TIGR01822 252 AR--------KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK-PA 319 (393)
T ss_pred eC--------HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CC
Confidence 86 467777765321 22233444555666666542 234667788999999999999886 66632 33
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC----CCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----LKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
. +.++.+.++.. .+..++...|++ +||.+. +..|. ....+|++++ +++++|++++++|++++++.
T Consensus 320 ~-~~~~~i~~~~~-----~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 320 D-HPIIPVMLYDA-----VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred C-CCEEEEEeCCH-----HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 3 33444444321 135667777655 599997 43332 1346999887 68999999999999987654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=232.96 Aligned_cols=346 Identities=26% Similarity=0.431 Sum_probs=264.4
Q ss_pred HHHHHHHHHHhhC--CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCCCEEEecC
Q 014603 65 SVAVDAIVHSVRS--ARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPGANILLPR 141 (422)
Q Consensus 65 ~~v~~a~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~ 141 (422)
..+++.....+.. +....|..+.|++-+|+.+|+|+.++-|++.+|++|++|+|++.|+..++..++ .+.+.|+++-
T Consensus 89 ~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPi 168 (475)
T KOG0258|consen 89 TDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPI 168 (475)
T ss_pred HHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeec
Confidence 3455555555543 356689999999999999999999999989999999999999999999999875 4678999999
Q ss_pred CCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-----CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC
Q 014603 142 PGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-----NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216 (422)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 216 (422)
|.|+-|.......|...+.+-++.+.+|.+|.++|++.+++ +++++++.||.||||.+++.+-+++|.++|.+++
T Consensus 169 PQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~ 248 (475)
T KOG0258|consen 169 PQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEG 248 (475)
T ss_pred CCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcC
Confidence 99999999999999999999999899999999999876543 6789999999999999999999999999999999
Q ss_pred cEEEEcccccccccCCC-CCCCcc----ccC---C-CCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHH
Q 014603 217 IMVIADEVYDHLAFGNT-PFVPMG----VFG---S-IVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIK 286 (422)
Q Consensus 217 ~~li~D~~~~~~~~~~~-~~~~~~----~~~---~-~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~ 286 (422)
++++.||+|..-.|.+. .+.++. +++ . ...++.+.|.||.+.+ -|.|-|++-.-+-. ++..+.+.
T Consensus 249 l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~-----prv~~qi~ 323 (475)
T KOG0258|consen 249 LVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRD-----PRVKQQIK 323 (475)
T ss_pred eEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCC-----hhHHHHHH
Confidence 99999999998887653 343422 122 1 1236888899999855 68999998553221 45666665
Q ss_pred hhhhhccCcchHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc
Q 014603 287 SFLNISSDPATFIQGAVPQILEKTE---------EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 287 ~~~~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
+.....-+++...|........... ....+.+.+.++++.+.+.+.+..++++.|. .+++++|.+.++..
T Consensus 324 Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn-~~qGAMY~fP~i~l 402 (475)
T KOG0258|consen 324 KLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCN-PVQGAMYLFPQISL 402 (475)
T ss_pred HHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeec-cCccceeecccccC
Confidence 5554444556666666555444211 1234455677888899999999999999954 89999999887643
Q ss_pred cc-------ccCCCCHHHHHHHHHHhcCeEEecCCCCCCC-C--eEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 358 SL-------LEGINSDMEFALKLAKEESVIVLPGITVGLK-D--WLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 358 ~~-------~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-~--~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+. ..+...+.-.+.+|++..||.++||++||.. + ++|.++-... + +.+++++++-.++-
T Consensus 403 P~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~~f~ 471 (475)
T KOG0258|consen 403 PPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHAEFM 471 (475)
T ss_pred CHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHHHHHH
Confidence 31 1233344556778899999999999999983 3 6888875332 4 67777776655543
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=232.05 Aligned_cols=372 Identities=22% Similarity=0.229 Sum_probs=278.9
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCC-CCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFP-SFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
.+...+++.|.++.+.+.++ ..++.|||++|..-... ..|.-+.|.+|-...........|.|..|++++++.++
T Consensus 4 ~i~~~p~DpIlgL~e~f~~D----~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~ 79 (396)
T COG1448 4 KIEAAPADPILGLKEAFKAD----PRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQ 79 (396)
T ss_pred ccccCCCCchhHHHHHHhcC----CCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHH
Confidence 46677888899999888776 57788999999754322 24566778777777776666678999999999999999
Q ss_pred HHHhhcCCCCCCCCCE--EEecCHHHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 98 DYLNRDLPYKLSPDDV--YLTLGCTQAIEVILTVLA--RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++......-+..+++ +-|.|||.|+..+...+. .+..+|++++|+|.++..++...|.++..+|..+..+..+|.
T Consensus 80 ~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df 159 (396)
T COG1448 80 KLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDF 159 (396)
T ss_pred HHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccH
Confidence 9994311111344555 468999999999987763 466789999999999999999999999999987766667898
Q ss_pred HHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCccccC-CCCCeE
Q 014603 174 DAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVFG-SIVPVL 248 (422)
Q Consensus 174 ~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~-~~~~~i 248 (422)
+.+.+.++ ++..+++-..+|||||.-++.++|++|+++.++.|.+.++|-+|.++.-+.. ....+..+. ....++
T Consensus 160 ~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~l 239 (396)
T COG1448 160 DGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELL 239 (396)
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEE
Confidence 88876553 3555555566699999999999999999999999999999999998654311 111111111 112378
Q ss_pred EEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-----HHHHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKITDIL 322 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~ 322 (422)
+..|+||.|++.|-|+|.+..-.++... ..++..+++... ...++|+......+..+|++.. +..+...++++
T Consensus 240 va~S~SKnfgLYgERVGa~~vva~~~~~-a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri 318 (396)
T COG1448 240 VASSFSKNFGLYGERVGALSVVAEDAEE-ADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRI 318 (396)
T ss_pred EEehhhhhhhhhhhccceeEEEeCCHHH-HHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997553222000 022334444433 3456888889999999998744 34567778899
Q ss_pred HHHHHHHHHHhhcC-C--CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-
Q 014603 323 RETADICCDRLKEI-P--CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA- 398 (422)
Q Consensus 323 ~~~~~~l~~~L~~~-~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~- 398 (422)
.++|..|.+.|++. + .+. .+..+.|+|.+..+ +.+.+.+|.++++|++..+. |||++
T Consensus 319 ~~mR~~lv~~L~~~~~~~~f~-~i~~Q~GMFsy~Gl----------s~~QV~rLree~~IY~v~sG--------Ri~vaG 379 (396)
T COG1448 319 LEMRQALVDALKALGAPRNFD-FIISQRGMFSYTGL----------SPEQVDRLREEFGIYLVASG--------RINVAG 379 (396)
T ss_pred HHHHHHHHHHHHhhCCCcccc-hHhhcCceeecCCC----------CHHHHHHHHHhccEEEecCC--------eeeecc
Confidence 99999999999983 2 255 44677899987655 34567888899999998754 99998
Q ss_pred cChHHHHHHHHHHHHH
Q 014603 399 VEPSALEDGLGRMKAF 414 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~ 414 (422)
.++.+++.+++.|.++
T Consensus 380 l~~~ni~~va~ai~~v 395 (396)
T COG1448 380 LNTSNIDYVAKAIAAV 395 (396)
T ss_pred CChhhHHHHHHHHHhh
Confidence 8899999999998875
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=245.41 Aligned_cols=327 Identities=15% Similarity=0.144 Sum_probs=232.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--CCC----CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--NCY----SSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|..+|||+.|++ .+++.+|++.+++.+++..... ..| +......++++.++++++ .++.++++
T Consensus 14 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~~ 83 (360)
T TIGR00858 14 DGRRLLNFSSNDY---LGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-------TEAALLFS 83 (360)
T ss_pred CCceEEecccCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-------CCCEEEEC
Confidence 6889999999963 2356778999999998865211 112 112234568888888873 24567777
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC----CceEEEEeCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE----NTVALVIINP 192 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p 192 (422)
+|+ +++..++.+++++||+|+++.|+|..+...++..|.+++.++. .|++.+++.++. +++++++.++
T Consensus 84 ~G~-~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~~~ 155 (360)
T TIGR00858 84 SGY-LANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTDGV 155 (360)
T ss_pred chH-HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEeCC
Confidence 665 5555677888899999999999999998888888988876652 478888887753 4577777788
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC--CCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF--VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
+|++|... ++++|.++|+++|+++|+||+|+.+.+..... .....+..++++++++|+||+|+++| ||++++
T Consensus 156 ~~~~G~~~---~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G~~~~~ 229 (360)
T TIGR00858 156 FSMDGDIA---PLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---AYVAGS 229 (360)
T ss_pred ccCCCCCc---CHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---cEEEcC
Confidence 99999884 57888999999999999999998654433211 12222333456899999999998777 999875
Q ss_pred CCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++++.+..... ...+.++..+.++.++++.. ...++.+++++++++.+.+.|+++ ++. + .+..
T Consensus 230 --------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~~~~ 296 (360)
T TIGR00858 230 --------QALIDYLINRARTLIFSTALPPAVAAAALAALELI--QEEPWRREKLLALIARLRAGLEAL-GFT-L-MPSC 296 (360)
T ss_pred --------HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHc-CCc-c-CCCC
Confidence 456666654322 12234455556666677542 223566789999999999999987 565 3 3555
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHH
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
+.++|+.++.. .++.++...+ .++||.+.++..+.. .+++||+++ ++++++++++++|+
T Consensus 297 ~~~~~~~~~~~-----~~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 297 TPIVPVIIGDN-----ASALALAEEL-QQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCEEEEEeCCH-----HHHHHHHHHH-HHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 77888887632 1345666666 556999998655432 468999998 58999999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=233.74 Aligned_cols=339 Identities=18% Similarity=0.151 Sum_probs=257.6
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-----CCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-----CYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
+|.|++..++ |+.|++.++|...+.....| .|+. ...+++.|+.||+.+ ++++++|+||+|+
T Consensus 2 miYlD~~ATT-----p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll------ga~~~eIiFTSG~ 70 (386)
T COG1104 2 MIYLDNAATT-----PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL------GADPEEIIFTSGA 70 (386)
T ss_pred cccccccccC-----CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh------CCCCCeEEEecCC
Confidence 4778888876 77799999999988763222 1211 134678899999999 6688999999999
Q ss_pred HHHHHHHHHHh--c----CCCCEEEecCCCccchHHHHhhC---CCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEe
Q 014603 120 TQAIEVILTVL--A----RPGANILLPRPGFPYYEARATHS---HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII 190 (422)
Q Consensus 120 ~~a~~~~~~~l--~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 190 (422)
|++.+.++... . +.|..|+++.-+|+.....++.+ |.++.+++++. ++.+|+++|++++++++.++.+.
T Consensus 71 TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~--~G~v~~e~L~~al~~~T~LVSim 148 (386)
T COG1104 71 TESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTILVSIM 148 (386)
T ss_pred cHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC--CCeEcHHHHHHhcCCCceEEEEE
Confidence 99999998872 2 25789999999999887777665 99999999865 45699999999999999999999
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
+.||.+|++ +++++|.++|+++++++++|.+|+. |+-+.++..++.| +...|-+|++|..| +|+++.+
T Consensus 149 ~aNnE~G~I---QpI~ei~~i~k~~~i~fHvDAvQa~----Gkipi~~~~~~vD---~ls~SaHK~~GpkG--iGaLyv~ 216 (386)
T COG1104 149 HANNETGTI---QPIAEIGEICKERGILFHVDAVQAV----GKIPIDLEELGVD---LLSFSAHKFGGPKG--IGALYVR 216 (386)
T ss_pred ecccCeeec---ccHHHHHHHHHHcCCeEEEehhhhc----CceeccccccCcc---eEEeehhhccCCCc--eEEEEEC
Confidence 999999999 6799999999999999999999987 6666677666554 77778999988888 7888874
Q ss_pred CCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCC--CC
Q 014603 271 DPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI-PCITCPKKP--EG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~--~~ 347 (422)
+..... |-+..--.......++.+.....+..++++. ....++....+++.++++|.+.|.+. |++.+...+ .-
T Consensus 217 ~~~~~~--p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~-a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rl 293 (386)
T COG1104 217 PGVRLE--PLIHGGGQERGLRSGTENVPGIVGFGKAAEI-AVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRL 293 (386)
T ss_pred CCCccC--ceeccCcCCCCCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCC
Confidence 321110 1111111111224567788888888888875 34667778889999999999999975 776533222 22
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHH
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALED 406 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~ 406 (422)
...+.+.++.. +.+.++.. ++.+||.+..|+.|.. .+.+|+|++ ++++|++.
T Consensus 294 P~~~~~~f~gv------~gE~ll~~-L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~ 366 (386)
T COG1104 294 PNILNFSFPGV------EGESLLLA-LDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDA 366 (386)
T ss_pred CCeEEEEeCCC------cHHHHHHh-ccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHH
Confidence 34555556542 45555554 4778999999999853 478999999 78999999
Q ss_pred HHHHHHHHHHHhcc
Q 014603 407 GLGRMKAFYDRHAK 420 (422)
Q Consensus 407 ~~~~l~~~~~~~~~ 420 (422)
+++.+.+++++++.
T Consensus 367 ~~~~l~~~i~~lr~ 380 (386)
T COG1104 367 AAEALKEIIKRLRE 380 (386)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=247.84 Aligned_cols=341 Identities=15% Similarity=0.171 Sum_probs=235.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|.+....+ +.+|.+.+++.+++..... ....+..++++.+++++.+.. ..+++++++||++|
T Consensus 37 dg~~~iD~~~g~~~~~lG-~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~----~~~~v~~~~gg~eA 108 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLG-HCHPKLVEAIQEQAAKLIH---TSNLYYIEPQEELAEKLVELS----GMDKVFFCNSGAEA 108 (396)
T ss_pred CCCEEEECCccHHhccCC-CCCHHHHHHHHHHHhhccc---cccccCCHHHHHHHHHHHhhc----CCCEEEECCCcHHH
Confidence 688999999987663222 2468999999998865311 111223577788888887643 34799999999999
Q ss_pred HHHHHHHhcCCC-------CEEEecCCCccchHHHHhhCCCeE-EEeeccC-CCCc----ccCHHHHHHhhcCCceEEEE
Q 014603 123 IEVILTVLARPG-------ANILLPRPGFPYYEARATHSHLEV-RHFDLLP-AKGW----EVDLDAVEALADENTVALVI 189 (422)
Q Consensus 123 ~~~~~~~l~~~g-------d~Vl~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~~----~~d~~~l~~~~~~~~~~i~i 189 (422)
+..+++.+...+ ++|++..++|+++...+...+... ...+..+ ..++ ..|++.+++.+.++++++++
T Consensus 109 ~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii 188 (396)
T PRK02627 109 NEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVML 188 (396)
T ss_pred HHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEE
Confidence 999999765322 689999999998865554433221 1111111 0111 12889999998878888888
Q ss_pred eCCCCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 190 INPGNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 190 ~~p~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
+.++||+| ..++++++++|.++|+++|+++|+||+|+++.++|.. ..+...+..++ +.+|||.++ +|+|+||++
T Consensus 189 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~~~~~~~pd---i~t~sK~~~-~G~rig~~~ 263 (396)
T PRK02627 189 EPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAYQHYGIEPD---IMTLAKGLG-GGVPIGAVL 263 (396)
T ss_pred ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eeehhcCCCCC---EEEEcchhh-CCcccEEEE
Confidence 88899999 6889999999999999999999999999987776642 22222332333 346899987 899999999
Q ss_pred eeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 346 (422)
++ +++++.+.... ..+.+.+++.++++.++|+... +...++.++.....++.+.+.+.+++.+. . .+.
T Consensus 264 ~~--------~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~ 333 (396)
T PRK02627 264 AK--------EKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIK-E-VRG 333 (396)
T ss_pred Ec--------HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCee-e-ecc
Confidence 86 35667665432 2345678899999999987533 22333333333344444444444443332 2 234
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.|.++|+.++. +..++...++++ ||.+.|+. .+++|++++ .+++++++++++|+++++++
T Consensus 334 ~g~~~~i~~~~-------~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 334 LGLMIGIELDR-------PAAEIVKKALEK-GLLINVTG----DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred CcEEEEEEecC-------cHHHHHHHHHHC-CeEEeecC----CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 57888988732 466777777554 99999864 477999875 78999999999999998764
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-30 Score=245.64 Aligned_cols=337 Identities=16% Similarity=0.109 Sum_probs=235.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|..+|||+.|++ ++++.+|.+.+++.+.+..... ..|....|.+++++.+++++.+.+| .++.|++|+| +
T Consensus 40 ~g~~~i~l~~~~~---~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g---~~~~i~~tsG-~ 112 (397)
T PRK06939 40 DGKEVINFCANNY---LGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG---TEDAILYSSC-F 112 (397)
T ss_pred CCCeEEEeeccCc---cccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC---CCcEEEEcCh-H
Confidence 5888999999873 3467889999999998865321 1222345778888888888887665 2356777776 7
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCC
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGN 194 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~n 194 (422)
+++..++++++++||+|++++|+|+++...+...+.+++.++. .|++.+++.+++ ++++++..+.+|
T Consensus 113 ~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~ 185 (397)
T PRK06939 113 DANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFS 185 (397)
T ss_pred HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcC
Confidence 7888999999999999999999999998888888888766643 377777776642 556666556689
Q ss_pred CcccccCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 195 ptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
++|.. +++++|.++|+++|++||+||+|+...+ .+........+. .+.+++++|+||+++ |+|+||++++
T Consensus 186 ~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~--g~r~G~v~~~-- 257 (397)
T PRK06939 186 MDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVM-DRVDIITGTLGKALG--GASGGYTAGR-- 257 (397)
T ss_pred CCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCC-CCCcEEEEECHHHhC--ccCceEEEeC--
Confidence 99986 6789999999999999999999963222 121111111121 123589999999973 5689999986
Q ss_pred CCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce
Q 014603 273 NGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM 349 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 349 (422)
+++++.+..... ..+++++..+.++.++++... ...+.+++++++++.+.+.|+++ ++. ...+.++
T Consensus 258 ------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~- 326 (397)
T PRK06939 258 ------KEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAA-GFT-LGPGEHP- 326 (397)
T ss_pred ------HHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCC-cCCCCCC-
Confidence 467777765432 122334444555555565421 13567788999999999999987 565 3244444
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
++++.++.. .++.+++..++++ ||.+.++.+... .+++|++++ ++++++++++++|++++++.
T Consensus 327 ~~~~~~~~~-----~~~~~~~~~L~~~-gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 327 IIPVMLGDA-----KLAQEFADRLLEE-GVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred EEEEEECCH-----HHHHHHHHHHHHC-CceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 333344321 1356677777655 999986543211 368999986 68999999999999998764
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=245.58 Aligned_cols=338 Identities=14% Similarity=0.167 Sum_probs=226.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|....+.++ .+|.+.+++.+++..... .+.. ...+....+++.|.+.. ..+++++++||++|
T Consensus 29 dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~--~~~~-~~~~~~~~la~~l~~~~----~~~~v~~~~sGseA 100 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWH--VSNL-YRIPEQERLAERLVENS----FADKVFFTNSGAEA 100 (389)
T ss_pred CCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCc--cccc-cCChHHHHHHHHHHhhC----CCCEEEEcCCcHHH
Confidence 6888999998865544454 689999999999875211 1111 11223334444443321 34689999999999
Q ss_pred HHHHHHHh----cCCCC----EEEecCCCccchHHHHhhCCCeEEEee-ccC-CCCcc----cCHHHHHHhhcCCceEEE
Q 014603 123 IEVILTVL----ARPGA----NILLPRPGFPYYEARATHSHLEVRHFD-LLP-AKGWE----VDLDAVEALADENTVALV 188 (422)
Q Consensus 123 ~~~~~~~l----~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~-~~~-~~~~~----~d~~~l~~~~~~~~~~i~ 188 (422)
++.+++++ ..+|| +|++.+++|+++...+...+....... ..+ ..++. .|++.+++.+++++++++
T Consensus 101 ~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avi 180 (389)
T PRK01278 101 VECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAIL 180 (389)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEE
Confidence 99998876 34565 899999999998766655443322211 001 11111 488999998887788887
Q ss_pred EeCCCCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 189 IINPGNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 189 i~~p~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
+..++|++| .++|.+++++|.++|++||+++|+||+|.++.++|... .....+..++ +.++||.++ +|+|+||+
T Consensus 181 vep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~t~sK~l~-~G~~ig~~ 255 (389)
T PRK01278 181 IEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF-AHEWAGVTPD---IMAVAKGIG-GGFPLGAC 255 (389)
T ss_pred EecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce-eecccCCCCC---EEEEehhcc-CCcceEEE
Confidence 776688888 78899999999999999999999999999887766432 2122222222 457899975 89999999
Q ss_pred EeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCCC
Q 014603 268 VTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK----EIPCITCP 342 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~ 342 (422)
+++ +++++.+.... ..+.+.+++.++++.++|+...+.. ..++++++.+.+++.|+ +.+++...
T Consensus 256 ~~~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 324 (389)
T PRK01278 256 LAT--------EEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPG---FLDNVQRMGLYLKQKLEGLVDRFPDVIEE 324 (389)
T ss_pred EEc--------HHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHhhCCCceee
Confidence 986 35666665443 2344678899999988887532211 12223333333333332 33322112
Q ss_pred CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 343 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
....|.++++.++. ++.++...++++ ||.+.|+. .+++|++++ .+++++++++++|++++++
T Consensus 325 -v~g~G~~~~i~~~~-------~~~~~~~~l~~~-GV~~~p~~----~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 325 -VRGKGLLLGLKCVV-------PNRDLVQALRDE-GLLTVGAG----DNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred -EecccEEEEEEEec-------CHHHHHHHHHHC-CeEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 22357777877742 466777777655 99999874 578999975 7899999999999998865
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=243.52 Aligned_cols=319 Identities=17% Similarity=0.131 Sum_probs=231.1
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCC-CCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSS-TVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
.+.++.+.+++.+.... ..|+. .....++++.+++++ ++++ +.+++++|+++++..++.+++++||+|+
T Consensus 8 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~------g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl 78 (356)
T cd06451 8 SNVPPRVLKAMNRPMLG---HRSPEFLALMDEILEGLRYVF------QTENGLTFLLSGSGTGAMEAALSNLLEPGDKVL 78 (356)
T ss_pred cCCCHHHHHHhCCCccC---CCCHHHHHHHHHHHHHHHHHh------cCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEE
Confidence 46678898888654321 12322 122557777778877 3433 4578899999999999999999999999
Q ss_pred ecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 139 LPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 139 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
++.++|++ +...++..|.+++.++.++ ++.+|++.+++.+++ +++++++++|+||+|.+++ +++|.++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~ 153 (356)
T cd06451 79 VGVNGVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKH 153 (356)
T ss_pred EecCCchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhc
Confidence 99988765 4567788899999998754 356899999999876 8899999999999999965 66778888899
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh---h----
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS---F---- 288 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~---~---- 288 (422)
|+++++|++|+. |..+.++...+.+ +++.|++|+++.| .++||++.+ +++++.+.. .
T Consensus 154 ~~~li~D~~~~~----g~~~~~~~~~~~d---~~~~s~~K~l~~p-~g~G~l~~~--------~~~~~~~~~~~~~~~~~ 217 (356)
T cd06451 154 DALLIVDAVSSL----GGEPFRMDEWGVD---VAYTGSQKALGAP-PGLGPIAFS--------ERALERIKKKTKPKGFY 217 (356)
T ss_pred CCEEEEeeehhc----cCccccccccCcc---EEEecCchhccCC-CCcceeEEC--------HHHHHHHHhcCCCCcee
Confidence 999999999864 2222233333332 6677899997654 348999986 345555542 0
Q ss_pred ---------h----hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CceEEEE
Q 014603 289 ---------L----NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GSMFVMV 353 (422)
Q Consensus 289 ---------~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~ 353 (422)
. ...++++...+.++.++++......++...++.+++++.+.+.|+++ ++.+...+. .+.+.|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 296 (356)
T cd06451 218 FDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAV 296 (356)
T ss_pred ecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEE
Confidence 0 12234555666777777766445667888889999999999999987 666332222 3445566
Q ss_pred ecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
.++.. .+..+++..+.+++||.+.+|..+..++++|+|++ ++++++++++++|++++
T Consensus 297 ~~~~~-----~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 297 LVPEG-----VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred ECCCC-----CCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 66532 14667777775555999999886655679999997 78999999999998876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-30 Score=244.56 Aligned_cols=333 Identities=16% Similarity=0.173 Sum_probs=229.6
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
++..++|++++ |.++..+|.+++++.+++..... ..|+......+|++++++++ + .++.+++++
T Consensus 45 ~~~~~~~~sn~---yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~------g-~~~~i~~~s 114 (410)
T PRK13392 45 PRRVTIWCSND---YLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH------G-KESALLFTS 114 (410)
T ss_pred CceEEEEECCC---ccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh------C-CCCEEEECc
Confidence 45688998877 55678899999999998865321 12333224678999999998 3 234555555
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh----cCCceEEEEeC
Q 014603 118 GCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA----DENTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~----~~~~~~i~i~~ 191 (422)
|++++..++..+.. +|+.|+++.++|..+...++..|.++..++. + |.+.+++.+ .++++++++++
T Consensus 115 -G~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~~~~~t~~v~i~~ 186 (410)
T PRK13392 115 -GYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH---N----DLADLEEQLASVDPDRPKLIAFES 186 (410)
T ss_pred -HHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC---C----CHHHHHHHHHhccCCCCEEEEEeC
Confidence 56777777776643 7898888888888777777788888766542 1 333444433 34788999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC-eEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
|+||||.+++ +++|.++|+++|+++|+||+|+...++..........+..++ .++++|+||.|+++| ||++++
T Consensus 187 ~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~ 260 (410)
T PRK13392 187 VYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAAS 260 (410)
T ss_pred CCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---chhhcC
Confidence 9999999975 778888899999999999999844432221111111111122 278899999998888 898875
Q ss_pred CCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++++.++.... .+...+++.++++.++|+... .....++++.++++++.+.|+++ ++. +..+.
T Consensus 261 --------~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~- 327 (410)
T PRK13392 261 --------ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLK--TSQTERDAHQDRVAALKAKLNAN-GIP-VMPSP- 327 (410)
T ss_pred --------HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCC-CCCCC-
Confidence 467776665442 233455577888888887532 23345577888999999999987 776 32344
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.++.+.++.. ....++..+|++++||.+.++..+.. ..++||+++ .++++++++++.|.++++++
T Consensus 328 ~~~~~i~~~~~-----~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 328 SHIVPVMVGDP-----TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 44544444321 02456777776678999998754432 368999996 78999999999999987754
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-30 Score=244.23 Aligned_cols=324 Identities=16% Similarity=0.172 Sum_probs=230.5
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC---CCCCCCC----CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF---NCYSSTV----GILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~y~~~~----g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.++|+++.++ ++|+.+++++.+.+..... ..|.... ...++|+.+++++ +.++++|++++|+
T Consensus 18 ~~yl~~~~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~------~~~~~~v~~~~~~ 86 (397)
T TIGR01976 18 RVFFDNPAGT-----QIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLL------NADPPEVVFGANA 86 (397)
T ss_pred eEEecCCccC-----CCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEeCCH
Confidence 6999988865 5778999999888754221 1343322 2468888888888 3455679999999
Q ss_pred HHHHHHHHHHh---cCCCCEEEecCCCccch----HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 120 TQAIEVILTVL---ARPGANILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 120 ~~a~~~~~~~l---~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
+++++.++.++ .++||+|++++++|.+. ...++..|.+++.++++++ ++.+|++.+++.++++++++++++|
T Consensus 87 t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~lv~i~~~ 165 (397)
T TIGR01976 87 TSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSPRTRLVAVTAA 165 (397)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCCCceEEEEeCC
Confidence 99999887775 67999999999998654 3456778999999887642 3568999999999888999999999
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
+||||... ++++|.++|+++|+++|+|+++.. +.....+...+.+ +++.|++|++ |+|+|+++++
T Consensus 166 ~n~tG~~~---~~~~i~~~~~~~~~~~ivD~a~~~----~~~~~~~~~~~~d---~~~~s~~K~~---g~~~G~l~~~-- 230 (397)
T TIGR01976 166 SNTLGSIV---DLAAITELVHAAGALVVVDAVHYA----PHGLIDVQATGAD---FLTCSAYKFF---GPHMGILWGR-- 230 (397)
T ss_pred CCCCCccC---CHHHHHHHHHHcCCEEEEehhhhc----cccCCCHHHcCCC---EEEEechhhc---CCceEEEEEc--
Confidence 99999996 588888899999999999999853 3223333333332 6778999996 4568999986
Q ss_pred CCcccchhHHHHHHhhhh-----------hccCcchHHHHHHHHHHhhchHH--------------HHHHHHHHHHHHHH
Q 014603 273 NGILQDSGIVDSIKSFLN-----------ISSDPATFIQGAVPQILEKTEEE--------------FFSKITDILRETAD 327 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~a~~~~l~~~~~~--------------~~~~~~~~~~~~~~ 327 (422)
+++++.+..... ..++++.....++.++++...+. ++++..++..+.++
T Consensus 231 ------~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 304 (397)
T TIGR01976 231 ------PELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAE 304 (397)
T ss_pred ------HHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 345555543211 12344544545554554432111 35667788888999
Q ss_pred HHHHHhhcCCCCCCCCCC----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-----------CCCe
Q 014603 328 ICCDRLKEIPCITCPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----------LKDW 392 (422)
Q Consensus 328 ~l~~~L~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----------~~~~ 392 (422)
++++.|++++++.+. .+ ..+.++.+.++.. +..++..+| +++||.+..|..|. ..++
T Consensus 305 ~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~ 376 (397)
T TIGR01976 305 YLLVGLSDLPGVTLY-GVARLAARVPTVSFTVHGL------PPQRVVRRL-ADQGIDAWAGHFYAVRLLRRLGLNDEGGV 376 (397)
T ss_pred HHHHHHhcCCCEEEe-CCCCccCCCceEEEEeCCc------CHHHHHHHH-HHCCeEEEeCccchHHHHHHhCCCCCCCe
Confidence 999999988767633 22 1344555555421 456666665 66799999886653 2468
Q ss_pred EEEEec--cChHHHHHHHHHH
Q 014603 393 LRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l 411 (422)
+|||++ ++++|++++++.|
T Consensus 377 iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 377 VRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred EEEEeeccCCHHHHHHHHHhC
Confidence 999997 7889999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-30 Score=242.33 Aligned_cols=334 Identities=15% Similarity=0.129 Sum_probs=235.4
Q ss_pred eecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC-------CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 49 PLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS-------TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 49 ~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+|+++..+ ++++.+.+++.+.+.....+.+.. ...+.++|+.+++++ ++++++|++|+|+|+
T Consensus 2 yld~aa~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~t~~~t~ 70 (379)
T TIGR03402 2 YLDNNATT-----RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLL------GAEPDEIIFTSGGTE 70 (379)
T ss_pred cCCCcCCC-----CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcHHH
Confidence 46666544 667899999998875421111111 112557778888887 457789999999999
Q ss_pred HHHHHHHHhc---CCCCEEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCC
Q 014603 122 AIEVILTVLA---RPGANILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNP 195 (422)
Q Consensus 122 a~~~~~~~l~---~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~np 195 (422)
+++.++.++. .+||+|++...+|+++.. .++..|.+++.++.++ ++.+|++.+++.++++++++++++++||
T Consensus 71 a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~~lv~i~~~~n~ 148 (379)
T TIGR03402 71 SDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITDDTALVSVMWANNE 148 (379)
T ss_pred HHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEEcccCC
Confidence 9999998764 456899999988876543 3344688998888753 3468999999999889999999999999
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCc
Q 014603 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275 (422)
Q Consensus 196 tG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~ 275 (422)
||.++| +++|.++|+++|+++++|++|+. |..+.++...+.| +++.|.+|.++.+| +|+++.++...
T Consensus 149 tG~~~~---~~~I~~l~~~~g~~vivD~~~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~G--~g~l~v~~~~~- 215 (379)
T TIGR03402 149 TGTIFP---IEEIGEIAKERGALFHTDAVQAV----GKIPIDLKEMNID---MLSLSGHKLHGPKG--VGALYIRKGTR- 215 (379)
T ss_pred eeeccc---HHHHHHHHHHcCCEEEEECcccc----cccccCcccCCCC---EEEEcHHHcCCCCc--eEEEEECCCCC-
Confidence 999976 56788899999999999999985 4434445544444 78888999766666 78887754221
Q ss_pred ccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCC---Cc-eE
Q 014603 276 LQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPE---GS-MF 350 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~g-~~ 350 (422)
. .|.+...........++++.....++.++++.. ..+++...++.+++++.+++.|++ ++++.+...+. .+ ..
T Consensus 216 ~-~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (379)
T TIGR03402 216 F-RPLLRGGHQERGRRAGTENVPGIVGLGKAAELA-TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVN 293 (379)
T ss_pred C-CCcccCCccCCCcCCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEE
Confidence 1 111110000011124577777777777777653 346778888999999999999985 77776332211 12 22
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHHHHH
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~~~~ 409 (422)
+++ +.. +..++...| .++||.+.+|..|.. .+.+|+|++ ++++||+++++
T Consensus 294 ~~~--~~~------~~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~ 364 (379)
T TIGR03402 294 ISF--EYI------EGEAILLLL-DMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLE 364 (379)
T ss_pred EEe--cCC------CHHHHHHhh-ccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHH
Confidence 333 221 456666654 677999999987643 268999998 78999999999
Q ss_pred HHHHHHHHhc
Q 014603 410 RMKAFYDRHA 419 (422)
Q Consensus 410 ~l~~~~~~~~ 419 (422)
.|++++++++
T Consensus 365 ~l~~~~~~~~ 374 (379)
T TIGR03402 365 VLPPIIARLR 374 (379)
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-30 Score=243.50 Aligned_cols=334 Identities=12% Similarity=0.088 Sum_probs=235.1
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC-------CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS-------TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
++|+++..+ ++++.+.+++.+.+.....+.... ...+.++|+.+++++ +.++++|++++|++
T Consensus 2 ~yld~a~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~i~~~~g~t 70 (381)
T PRK02948 2 IYLDYAATT-----PMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMI------GGEEQGIYFTSGGT 70 (381)
T ss_pred EeccCCCCC-----CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCcHH
Confidence 678887755 567899999988776421111110 122567788888888 45788999999999
Q ss_pred HHHHHHHHHhc----CCCCEEEecCCCccchH---HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 121 QAIEVILTVLA----RPGANILLPRPGFPYYE---ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 121 ~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+++..++.++. ++||.|++...+|+++. ..++..|.+++.++.++ ++.+|++.+++.++++++++++++|+
T Consensus 71 ~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~ 148 (381)
T PRK02948 71 ESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITPDTVLASIQHAN 148 (381)
T ss_pred HHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCCCCEEEEEECCc
Confidence 99999888875 57899999997776553 34566788998888753 35689999999988889999999999
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
||||.++| +++|.++|+++|+++|+|+++.. |.....+...+. .+++.|+||.++.+| +|++++++..
T Consensus 149 n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~----g~~~~~~~~~~~---d~~~~s~~K~~gp~G--~G~l~~~~~~ 216 (381)
T PRK02948 149 SEIGTIQP---IAEIGALLKKYNVLFHSDCVQTF----GKLPIDVFEMGI---DSLSVSAHKIYGPKG--VGAVYINPQV 216 (381)
T ss_pred CCcEeehh---HHHHHHHHHHcCCEEEEEChhhc----cccccCcccCCC---CEEEecHHhcCCCCc--EEEEEEcCCC
Confidence 99999964 67888889999999999988765 222223333333 388899999988888 7888875321
Q ss_pred CcccchhHHH-HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc----
Q 014603 274 GILQDSGIVD-SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS---- 348 (422)
Q Consensus 274 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g---- 348 (422)
... .... .........++++.+.+.++.++++... +++++.+++++++++++.+.|+++ ++.+.......
T Consensus 217 ~~~---~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~ 291 (381)
T PRK02948 217 RWK---PVFPGTTHEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLP 291 (381)
T ss_pred CCC---CcccCCCCCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcC
Confidence 000 0000 0000111235788888888888887532 467888899999999999999988 44422111111
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHHH
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALEDG 407 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~~ 407 (422)
.++.+.++. . +..++...+ .++||.+.+|..|.. .+++|||++ ++++|++++
T Consensus 292 ~i~~~~~~~-----~-~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l 364 (381)
T PRK02948 292 HIIGVTIKG-----I-EGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTT 364 (381)
T ss_pred CEEEEEeCC-----C-CHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHH
Confidence 112122221 1 355565554 677999998875421 368999998 789999999
Q ss_pred HHHHHHHHHHh
Q 014603 408 LGRMKAFYDRH 418 (422)
Q Consensus 408 ~~~l~~~~~~~ 418 (422)
++.|+++++++
T Consensus 365 ~~~l~~~~~~~ 375 (381)
T PRK02948 365 IHALETIGNQF 375 (381)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-29 Score=238.63 Aligned_cols=337 Identities=14% Similarity=0.157 Sum_probs=237.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
-+|+.+|||+.+++ ++++++|.+.+++.+++... ....|....|..++++.+++++.+..+ .++.+++++|
T Consensus 30 ~~g~~~id~~~~~~---~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g---~~~~i~~~sG- 102 (385)
T TIGR01825 30 VNGKEVINLSSNNY---LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK---TEAALVFQSG- 102 (385)
T ss_pred ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcH-
Confidence 36889999998862 34778899999999988642 223566777889999999999988665 2345666666
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC----CceEEEEeCCCCC
Q 014603 120 TQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE----NTVALVIINPGNP 195 (422)
Q Consensus 120 ~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p~np 195 (422)
++++..++.+++++||.|+++.|+|..+...+...+.++..++ .+|++.+++.+.+ +++++++.+++||
T Consensus 103 ~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~ 175 (385)
T TIGR01825 103 FNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSM 175 (385)
T ss_pred HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcC
Confidence 6677788888899999999999999988777777777765543 2677777776543 5777777777999
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEEcccccccccC--CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG--NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 196 tG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
||.+.+ +++|.++|++||+++|+||+|+.+.+. +........+. .+.++++.|+||+|+++| ||++++
T Consensus 176 tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g---G~~~~~--- 245 (385)
T TIGR01825 176 DGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG---GYAAGH--- 245 (385)
T ss_pred CCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC---CEEecC---
Confidence 999854 788999999999999999999765443 21111111122 245789999999997666 998875
Q ss_pred CcccchhHHHHHHhhhh-h--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE
Q 014603 274 GILQDSGIVDSIKSFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF 350 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 350 (422)
+++++.+..... . ....++..+.++.++++...+ ..+..+++.++++.+.+.|+++ ++. +..|... +
T Consensus 246 -----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~-~ 315 (385)
T TIGR01825 246 -----KELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYD-TGGSETP-I 315 (385)
T ss_pred -----HHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCC-CCCCCCC-E
Confidence 467777755432 1 223455667777777764211 1245666778889999999887 776 3345443 4
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---CCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+++.++.. .+..++...++++ ||.+.++.... ..+++|++++ ++++++++++++|++++++.
T Consensus 316 ~~~~~~~~-----~~~~~~~~~L~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 316 TPVVIGDE-----KAAQEFSRRLFDE-GIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred EEEEECCH-----HHHHHHHHHHHHC-CcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 44444321 1245677777665 99985433322 1368999886 79999999999999988654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=239.69 Aligned_cols=330 Identities=16% Similarity=0.135 Sum_probs=228.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--CCCCCCCCC----CHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--FNCYSSTVG----ILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|..+|||+.+++ +++.++|++.+++.+++.... ...|....+ ..++++.+++++ + .+ ..+++
T Consensus 37 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~---~~-~~i~~ 105 (385)
T PRK05958 37 DGRRMLNFASNDY---LGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWF----G---AE-RALLF 105 (385)
T ss_pred CCceEEEeeCCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHh----C---CC-cEEEE
Confidence 6899999999862 345677899999999886521 112222223 455666666665 2 23 44555
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC---ceEEEEeCCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN---TVALVIINPG 193 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~i~i~~p~ 193 (422)
+++++++..++..++++||.|+++.|+|..+...+...|.+++.++. .|++.+++.+++. +.++++.+++
T Consensus 106 ~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~ 178 (385)
T PRK05958 106 SSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVF 178 (385)
T ss_pred CcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecc
Confidence 55667777777888999999999999999988888888888877653 3778888877542 4445555678
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC--CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG--NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
|++|.. .++++|.++|+++|+++|+||+|+.+.+. +........+...++++++.|+||+|+.+| ||++++
T Consensus 179 ~~~G~~---~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g~~~~~- 251 (385)
T PRK05958 179 SMDGDL---APLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---AAVLGS- 251 (385)
T ss_pred cCCCCc---CCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---cEEEcC-
Confidence 999988 45889999999999999999999764432 222211112333456799999999997777 888875
Q ss_pred CCCcccchhHHHHHHhhh-h--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 272 PNGILQDSGIVDSIKSFL-N--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
+++.+.+.... . ....+++..+.++.++++.... . ....+++.++++.+.+.|+++ ++. +..+ .+
T Consensus 252 -------~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~-~-~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~-~~ 319 (385)
T PRK05958 252 -------ETLIDYLINRARPFIFTTALPPAQAAAARAALRILRR-E-PERRERLAALIARLRAGLRAL-GFQ-LMDS-QS 319 (385)
T ss_pred -------HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHc-CCC-cCCC-CC
Confidence 45666654332 1 1224555666666677764321 1 456788889999999999987 566 3244 45
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---CCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
.++++.++.. .++.++...+ .++||.+.++..+. .++++||+++ ++++++++++++|++++
T Consensus 320 ~~~~~~~~~~-----~~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 320 AIQPLIVGDN-----ERALALAAAL-QEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred CEEEEEeCCH-----HHHHHHHHHH-HHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 5777777531 1345676666 55699998854432 1468999998 68999999999998753
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-29 Score=239.34 Aligned_cols=338 Identities=14% Similarity=0.100 Sum_probs=239.8
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-----CCCCCCCCHHHHHHHHHHHhhcCCCCC-CCCCEEEecCHHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-----CYSSTVGILPARRAIADYLNRDLPYKL-SPDDVYLTLGCTQ 121 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~~~g~~~ 121 (422)
|+|+++..+ ++++.+++++.+.+.....+ .|+ ..+...+++++++++.. . +. ++++|++|+|+++
T Consensus 1 ~yld~aa~~-----~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~-~--~~~~~~~i~~t~g~te 71 (382)
T TIGR03403 1 VYLDNNATT-----MLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKG-I--NARDLDDIIITSCATE 71 (382)
T ss_pred CcccCcCCC-----CCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHH-c--CcCCCCeEEEeCCHHH
Confidence 356666655 56688999999888653222 222 13456778887777743 2 33 6789999999999
Q ss_pred HHHHHHHHhc-----CC-CCEEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 122 AIEVILTVLA-----RP-GANILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 122 a~~~~~~~l~-----~~-gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
+++.+++++. ++ +++|+++..+|+++.. .++..|.+++.+++++ ++.+|++.+++.++++++++++++|
T Consensus 72 al~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~ 149 (382)
T TIGR03403 72 SNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE--QGTITAEQVREAITEKTALVSVMWA 149 (382)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC--CCCCCHHHHHHhcccCCeEEEEEcc
Confidence 9999998752 45 4789999877766543 3456789999998753 3468999999999888999999999
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
+||||.+++ +++|.++|+++|+++++|++++. |..+.++...+.| +++.|++|+++.+| +|++++++.
T Consensus 150 ~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~G--~g~l~vr~~ 217 (382)
T TIGR03403 150 NNETGMIFP---IKEIGEICKERGVLFHTDAVQAI----GKIPVDVQKAGVD---FLSFSAHKFHGPKG--VGGLYIRKG 217 (382)
T ss_pred cCCCccccC---HHHHHHHHHHcCCEEEEechhhc----CCCccCccccCCC---EEEEcchhhCCCCc--eEEEEECCC
Confidence 999999976 56788888899999999999875 3222333333333 88889999887778 688877543
Q ss_pred CCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---Cce
Q 014603 273 NGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE---GSM 349 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~ 349 (422)
.... +.+...........++++...+.++..+++.. .++++...++++++++++.+.|++++++.+. .+. .+.
T Consensus 218 ~~~~--p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~-~~~~~~~~~ 293 (382)
T TIGR03403 218 VELT--PLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVV-GDREHRVPN 293 (382)
T ss_pred CCCC--CcccCCCCCCCcccCCcChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEE-CCCCCCcCC
Confidence 2111 11100000001124578888888888888753 3457778889999999999999998888743 332 133
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~~~ 408 (422)
++.+.++.. +..++...| .++||.+..|..|.. .+.+|+|++ ++++|+++++
T Consensus 294 ~~~~~~~~~------~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~ 366 (382)
T TIGR03403 294 TILISIKGV------EGEAMLWDL-NKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTI 366 (382)
T ss_pred EEEEEeCCC------CHHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHH
Confidence 555555421 456666664 677999998876631 257999998 7899999999
Q ss_pred HHHHHHHHHhc
Q 014603 409 GRMKAFYDRHA 419 (422)
Q Consensus 409 ~~l~~~~~~~~ 419 (422)
+.|++++++++
T Consensus 367 ~~l~~~~~~~~ 377 (382)
T TIGR03403 367 EVFKKAVQRLR 377 (382)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=242.14 Aligned_cols=336 Identities=15% Similarity=0.108 Sum_probs=229.8
Q ss_pred CCCceeecCCCCCCCCCCCC-----cHHHHHHHHHHhhC--CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 44 TRPLIPLGHGDPSAFPSFRT-----ASVAVDAIVHSVRS--ARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~-----~~~v~~a~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
...++||++.+ |.++.. .+.+.+++.+.-.. ..-..|++...+.++++++|++++ .++.++++
T Consensus 99 ~~~~~n~~s~~---YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~ 168 (489)
T PLN02483 99 TRRCLNLGSYN---YLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFG 168 (489)
T ss_pred CceEEEeecCC---ccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEEC
Confidence 56689999887 445442 34555555554322 111247777789999999999994 34556665
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-------CC-----c
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-------EN-----T 184 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~-----~ 184 (422)
+ |..++..++.+++++||.|++++++|.++...++..|++++.++.+ |++.+++.++ ++ .
T Consensus 169 ~-G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~ 240 (489)
T PLN02483 169 M-GYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWK 240 (489)
T ss_pred C-HHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCc
Confidence 5 5666667888899999999999999999999999999999888753 3444444332 22 2
Q ss_pred eEEEEeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCCccccCCCCCeEEEecCccccCCCC
Q 014603 185 VALVIINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGSIVPVLTLGSISKRWIVPG 261 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G 261 (422)
++++++++ .|++|.+ .++++|+++|+++|++||+||+|+.... +|.....+..+...+..++++||||+|++.|
T Consensus 241 k~livve~v~s~~G~~---~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G 317 (489)
T PLN02483 241 KIIVIVEGIYSMEGEL---CKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG 317 (489)
T ss_pred eEEEEECCCCCCCCcc---cCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc
Confidence 55666666 6899998 5788899999999999999999984332 2222222223333345699999999998877
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhch----HHHHHHHHHHHHHHHHHHHHHhh
Q 014603 262 WRLGWLVTSDPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTE----EEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 262 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
||++++ +++++.+..... .....++....++.++|+... .....+.+++++++++.+++.|+
T Consensus 318 ---G~i~~~--------~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~ 386 (489)
T PLN02483 318 ---GYIAGS--------KELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQ 386 (489)
T ss_pred ---eEEEcC--------HHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHH
Confidence 999875 568888876532 122333344434455554211 23345567889999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~ 409 (422)
++ ++. +..+.++...++.+.... ...++...+++ +||.+.+..++.. .+.+|++++ +++++|+++++
T Consensus 387 ~~-G~~-v~~~~~sp~~~l~l~~~~-----~~~~~~~~Ll~-~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~ 458 (489)
T PLN02483 387 KM-GFE-VLGDNDSPVMPIMLYNPA-----KIPAFSRECLK-QNVAVVVVGFPATPLLLARARICISASHSREDLIKALE 458 (489)
T ss_pred HC-CCc-ccCCCCCCEEEEEECCHH-----HHHHHHHHHHH-CCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 98 666 334555556666553211 24466677655 5999997433222 368999997 68999999999
Q ss_pred HHHHHHHHhc
Q 014603 410 RMKAFYDRHA 419 (422)
Q Consensus 410 ~l~~~~~~~~ 419 (422)
+|.++++.+.
T Consensus 459 ~L~~~~~~~~ 468 (489)
T PLN02483 459 VISEVGDLVG 468 (489)
T ss_pred HHHHHHHHhC
Confidence 9999987653
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-29 Score=237.11 Aligned_cols=332 Identities=14% Similarity=0.125 Sum_probs=231.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC-----CCCC-CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR-----FNCY-SSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~-----~~~y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
.+..++||+..+ |.++..+|++++++.+++.... ...+ .......++++.++++++ .+.++++
T Consensus 52 ~g~~~~~~~~~~---YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--------~~~~~~~ 120 (407)
T PRK07179 52 PGPDAIILQSND---YLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG--------FESCLLC 120 (407)
T ss_pred CCCcEEEeecCC---ccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC--------CCcEEEE
Confidence 356678998877 6677889999999999986421 1111 112245788888998882 2467889
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNP 195 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~np 195 (422)
+||++|+..+++++..+||.|++..++|.+....+...|.+++.++. .|++.+++.+++ +++++++++++||
T Consensus 121 ~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~n~ 193 (407)
T PRK07179 121 QSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVYST 193 (407)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 99999999999999999999999999998887777778877655432 488999998865 4677888889999
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC-eEEEecCccccCCCCceeEEEEeeCCCC
Q 014603 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNG 274 (422)
Q Consensus 196 tG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~s~sK~~~~~G~r~G~~~~~~~~~ 274 (422)
+|.++| +++|.++|+++|+++|+||+|+...++..+...+..++..+. .+++.|+||.++ .|+|+++++
T Consensus 194 tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~---- 263 (407)
T PRK07179 194 TGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCP---- 263 (407)
T ss_pred CCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeC----
Confidence 999976 678888999999999999999854332221111223332222 388899999975 368999985
Q ss_pred cccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEE
Q 014603 275 ILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFV 351 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 351 (422)
+++++.+..... ..++.++...+++.++++.. ......+++++++++++.+.|+++ ++. +. ..+.++
T Consensus 264 ----~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~--~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v~--~~~~i~ 333 (407)
T PRK07179 264 ----RELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI--ESADDRRARLHANARFLREGLSEL-GYN-IR--SESQII 333 (407)
T ss_pred ----HHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCC-CC--CCCCEE
Confidence 356665543321 22333444444454555542 223456788999999999999988 776 32 235677
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---CCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
++.++.. ...+.+...+.++||.+..-.... ..+.+||+++ +++++++++++.|++++++.
T Consensus 334 ~l~~~~~------~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 334 ALETGSE------RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred EEEeCCH------HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 7766431 122334444566799743211111 2478999998 78999999999999998775
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-29 Score=238.01 Aligned_cols=333 Identities=17% Similarity=0.170 Sum_probs=232.5
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
++.+++|++++ |.++..+|++++++.+++...... .|.......+|++.++++++ .+..++++
T Consensus 44 ~~~~~~~~sn~---ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g--------~~~~l~~~ 112 (402)
T TIGR01821 44 AKDVTVWCSND---YLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG--------KESALVFT 112 (402)
T ss_pred CeeEEEeEccC---cCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC--------CCeEEEEC
Confidence 47789999988 778889999999999998763221 12223345788888888882 23567777
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc---C-CceEEEEeC
Q 014603 118 GCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD---E-NTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~-~~~~i~i~~ 191 (422)
+|++|+..++..+.. +++.|+.....|......+...|.++..++. .|++.+++.++ + +++++++++
T Consensus 113 sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~ 185 (402)
T TIGR01821 113 SGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFES 185 (402)
T ss_pred chHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcC
Confidence 779999999888765 6777777766776666677777777655432 25566666554 2 578889999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
|+||+|.+.+ +++|.++|+++|+++|+||+|+...++..........+. ++..++++|+||.|+++| ||++++
T Consensus 186 ~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~ 259 (402)
T TIGR01821 186 VYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAAS 259 (402)
T ss_pred CCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecC
Confidence 9999999965 788888999999999999999844332211111111121 122478899999998888 898875
Q ss_pred CCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++++.+..... ++.+.++..++++.++|+...+. ....+++.++++++.+.|+++ ++. ...+.
T Consensus 260 --------~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~- 326 (402)
T TIGR01821 260 --------RKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEAL-GIP-VIPNP- 326 (402)
T ss_pred --------HHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc-CCC-cCCCC-
Confidence 467777764332 23356677788888888753221 445566678888999999887 666 32343
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.++.+.++.. ....++...+++++||.+.+...+.. .+++||+++ +++++++++++.|+++++++
T Consensus 327 ~~i~~i~~~~~-----~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 327 SHIVPVIIGDA-----ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CCEEEEEeCCH-----HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 55655555421 02456666666677999988654433 368999997 78999999999999998764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=238.27 Aligned_cols=335 Identities=14% Similarity=0.141 Sum_probs=230.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|..+|||..|.+..+.+ +.+|.+.+++.+++.... ...|+ .....++++++++++ ..+++++++||+
T Consensus 25 ~g~~~id~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~--------g~~~~~~~~sg~ 94 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLG-HAHPKLVEALKEQLEKLVHVSNLYY-TEPQEELAEKLVEHS--------GADRVFFCNSGA 94 (379)
T ss_pred CCCEEEEcCcchhhccCC-CCCHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHhhC--------CCCEEEEeCCcH
Confidence 588899999986554333 356899999999887531 12332 233456666666665 235999999999
Q ss_pred HHHHHHHHHhc---C----CCCEEEecCCCccchHHHHhhCCCeEEE----eeccCCCCcc--cCHHHHHHhhcCCceEE
Q 014603 121 QAIEVILTVLA---R----PGANILLPRPGFPYYEARATHSHLEVRH----FDLLPAKGWE--VDLDAVEALADENTVAL 187 (422)
Q Consensus 121 ~a~~~~~~~l~---~----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~--~d~~~l~~~~~~~~~~i 187 (422)
+++..+++.+. . ++|+|++++|+|+++...+...+..... .++..+..+. .|++.+++.++++++++
T Consensus 95 ~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v 174 (379)
T TIGR00707 95 EANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAV 174 (379)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEE
Confidence 99999988652 2 3799999999999887666655443211 1221111111 17899999888788888
Q ss_pred EEeCCCCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEE
Q 014603 188 VIINPGNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 188 ~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
+++.++|++|.. ++.+++++|.++|+++|+++|+||+|.++.+.|.. .++...+..+++ .++||.++ +|+|+||
T Consensus 175 ~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~~~~~~~~d~---~t~sK~~~-~G~riG~ 249 (379)
T TIGR00707 175 IVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAYEHYGIEPDI---ITLAKGLG-GGVPIGA 249 (379)
T ss_pred EEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhHHhcCCCCCE---EEEccccc-CCcccEE
Confidence 886556777764 68999999999999999999999999877665532 222222222333 36799987 9999999
Q ss_pred EEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCC
Q 014603 267 LVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP-CITCPKK 344 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~ 344 (422)
++++ +++++.+.... ....+.+++.++++.++|+... ..+..++++++++.+++.|+++. .......
T Consensus 250 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (379)
T TIGR00707 250 TLAK--------EEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---KERLLENVKEKGDYFKERLEELGKNYPNKEV 318 (379)
T ss_pred EEEc--------HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 9986 46777776532 2334568889999998887532 12355666677777777776541 1110112
Q ss_pred CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
+..|.++|+.++. +..++.+.+ .++||.+.|+. .+++|++++ .+++++++++++|++++
T Consensus 319 ~~~g~~~~~~~~~-------~~~~~~~~l-~~~Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 319 RGKGLMLGIELEA-------PCKDIVKKA-LEKGLLVNCAG----PKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred ccCceEEEEEecC-------cHHHHHHHH-HHCCcEEeeCC----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 3457788888763 345666654 66799999853 478999985 68999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=241.32 Aligned_cols=342 Identities=14% Similarity=0.136 Sum_probs=234.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|+.++||..|.+....+ +.+|.+.+++.+++.+.. ...|.... ..++.+.+++++ + ...++++++++|++
T Consensus 41 dg~~~lD~~s~~~~~~lG-~~~p~v~~ai~~~~~~~~~~~~~~~~~~-~~~la~~l~~~~----~-~~~~~~v~~~~sgs 113 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALG-HAHPAVVEAVTRQLATLGHVSNLFATEP-QIALAERLVELL----G-APEGGRVFFCNSGA 113 (398)
T ss_pred CCCEEEECCcCHhhccCC-CCCHHHHHHHHHHHHhccCccCccCCHH-HHHHHHHHHHhC----C-CCCCCEEEEeCchH
Confidence 688899999887653333 247999999999987632 23454432 245555555554 2 12357999999999
Q ss_pred HHHHHHHHHhcCCC-CEEEecCCCccchHHHHhhC-CCeEEEeeccCC-CC-c---ccCHHHHHHhhcCCceEEEEeCCC
Q 014603 121 QAIEVILTVLARPG-ANILLPRPGFPYYEARATHS-HLEVRHFDLLPA-KG-W---EVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 121 ~a~~~~~~~l~~~g-d~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~-~---~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+|+..+++.+..+| +.|+..+++|+++...+... +......+..+. .+ . ..|++.+++.+.+++++++++.++
T Consensus 114 ea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~ 193 (398)
T PRK03244 114 EANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQ 193 (398)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcCCeEEEEEeccc
Confidence 99999999766566 57788888998875444422 211111110000 00 0 027889998887778888888889
Q ss_pred CCcccccCHH-HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 194 NPCGNVYTYQ-HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 194 nptG~~~~~~-~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
||+|.++|++ .+++|.++|++||+++|+||+|+++.++|... .+...+..++ +.++||.++ +|+|+|+++++
T Consensus 194 ~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~pD---i~t~sK~l~-~G~~ig~~~~~-- 266 (398)
T PRK03244 194 GEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-AHQHDGVTPD---VVTLAKGLG-GGLPIGACLAF-- 266 (398)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-hhhhhCCCCC---EEEEchhhh-CCcccEEEEEc--
Confidence 9999987654 49999999999999999999999877766432 1122222223 336789976 89999999996
Q ss_pred CCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCceE
Q 014603 273 NGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP-KKPEGSMF 350 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~ 350 (422)
+++++.+.... ..+.+.+++.+.++.++|+...+ .+..++++++.+++++.|+++ +...+ .....|.+
T Consensus 267 ------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~ 336 (398)
T PRK03244 267 ------GPAADLLTPGLHGSTFGGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLL 336 (398)
T ss_pred ------HHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEE
Confidence 45777665432 23457788999999999875322 245566777788888888875 22111 12346789
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+|+.++.. ...++...+ .++||.+.+.. .+++|++++ .+++++++++++|++++++..
T Consensus 337 ~~i~~~~~------~~~~~~~~l-~~~Gv~~~~~~----~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 337 LGIVLTAP------VAKAVEAAA-REAGFLVNAVA----PDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred EEEEEecc------HHHHHHHHH-HHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 99988532 244555555 56799998742 478999987 689999999999999997643
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=236.77 Aligned_cols=315 Identities=19% Similarity=0.214 Sum_probs=225.9
Q ss_pred CCcHHHHHHHHHHhhCCCCC-CCCC-------CCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEecCHHHHHHHHHHHhcC
Q 014603 62 RTASVAVDAIVHSVRSARFN-CYSS-------TVGILPARRAIADYLNRDLPYKLS-PDDVYLTLGCTQAIEVILTVLAR 132 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~-~y~~-------~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~ 132 (422)
++++.+.+++.+.+.....+ ..+. ...+.++|+.++++++ .+ ++++++|+|++++++.++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~l~~ 83 (373)
T cd06453 10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFIN------APSPDEIIFTRNTTEAINLVAYGLGR 83 (373)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence 56788999998877442111 0001 1235678888888883 44 67999999999999999999877
Q ss_pred ---CCCEEEecCCCccch----HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 133 ---PGANILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 133 ---~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
+||+|++++++|.+. ...++..|.+++.++.+ .++.+|++.+++.+.++++++++++++||||.+.+ +
T Consensus 84 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~ 158 (373)
T cd06453 84 ANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---V 158 (373)
T ss_pred cCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---H
Confidence 899999999999774 34455678999999875 34568999999999888999999999999999965 6
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSI 285 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 285 (422)
++|.++|+++|+++++|++|+.. ....++...+.+ +++.|++|++++ .++|++++++ ++++++
T Consensus 159 ~~i~~~~~~~~~~li~D~a~~~~----~~~~~~~~~~~d---~~~~s~~K~~~~--~g~g~~~~~~--------~~~~~~ 221 (373)
T cd06453 159 KEIGEIAHEAGVPVLVDGAQSAG----HMPVDVQDLGCD---FLAFSGHKMLGP--TGIGVLYGKE--------ELLEEM 221 (373)
T ss_pred HHHHHHHHHcCCEEEEEhhhhcC----ceeeeccccCCC---EEEeccccccCC--CCcEEEEEch--------HHhhcC
Confidence 78888888999999999998752 222223333333 677899999765 4589998863 344444
Q ss_pred Hhhhh----------------------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014603 286 KSFLN----------------------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343 (422)
Q Consensus 286 ~~~~~----------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 343 (422)
..... ..++++.....++..+++...+..+++.+++.+++++++.+.|++++++.+..
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 301 (373)
T cd06453 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYG 301 (373)
T ss_pred CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Confidence 32210 01245555566666666654445567788888899999999999988776431
Q ss_pred CC-CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC--------CCCeEEEEec--cChHHHHHHHHHH
Q 014603 344 KP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--------LKDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 344 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--------~~~~iRis~~--~~~~~l~~~~~~l 411 (422)
.+ ..+.++++.++.. +..++.+.+ .++||.+.+|..+. ..+++|+|++ ++++|++++++.|
T Consensus 302 ~~~~~~~~~~~~~~~~------~~~~i~~~l-~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 302 DAEDRAGVVSFNLEGI------HPHDVATIL-DQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CccccCCeEEEEECCc------CHHHHHHHH-HHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 11 1244556666431 456666665 55799998876542 3579999998 7899999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=234.28 Aligned_cols=315 Identities=16% Similarity=0.171 Sum_probs=218.6
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~ 126 (422)
+|||+++.-+ .++|.+.+++.+.... ...|++.....+|++++++++ ++ +.+++++|+++++..+
T Consensus 1 ~~~~~~~~~~-----~p~~~~~~a~~~~~~~--~~~Y~~~~~~~~L~~~la~~~------g~--~~~~v~~~g~~a~~~~ 65 (333)
T PRK10534 1 MIDLRSDTVT-----RPSRAMLEAMMAAPVG--DDVYGDDPTVNALQDYAAELS------GK--EAALFLPTGTQANLVA 65 (333)
T ss_pred CcccccccCC-----CCCHHHHHHHHhccCC--CcccCCCHHHHHHHHHHHHHh------CC--CeEEEeCchHHHHHHH
Confidence 3677777633 3678999998775433 457877677899999999998 33 3456888888888888
Q ss_pred HHHhcCCCCEEEecCCCccc-hHHH-HhhCC-CeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcc
Q 014603 127 LTVLARPGANILLPRPGFPY-YEAR-ATHSH-LEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCG 197 (422)
Q Consensus 127 ~~~l~~~gd~Vl~~~~~~~~-~~~~-~~~~g-~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG 197 (422)
+.+++.+||+|+++.|+|.. +... +...+ ..++.++.+ .++.+|+++|++.+++ +++++++++|+ +|
T Consensus 66 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G 141 (333)
T PRK10534 66 LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NG 141 (333)
T ss_pred HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CC
Confidence 88889999999999888753 3221 23333 566666553 4578899999998865 57889998766 59
Q ss_pred cccCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCCccccCCCCCeEEEecCccccCCCCceeE-EEEeeCCCC
Q 014603 198 NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG-WLVTSDPNG 274 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G-~~~~~~~~~ 274 (422)
.+++.+++++|+++|+++++++++||+|..... .+. ....+....+.+ +.||||.|+++ +| |++++
T Consensus 142 ~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~---~~~~~~~~~~~~-~~s~SK~~~~~---~G~~~~~~---- 210 (333)
T PRK10534 142 KVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGC---ELKEITQYCDSF-TICLSKGLGTP---VGSLLVGN---- 210 (333)
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCC---CHHHHHhcCCEE-EEEeEcCCCCc---ccceEEcC----
Confidence 999999999999999999999999999763211 011 111111111223 34899998654 67 56654
Q ss_pred cccchhHHHHHHhhhhhccC---cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEE
Q 014603 275 ILQDSGIVDSIKSFLNISSD---PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFV 351 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 351 (422)
+++++.+......++. .+.+.+.++..+|++ . .+..++..+.++.+.+.|+++ ++. +..| .++|+
T Consensus 211 ----~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~----~-~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-~~nfv 278 (333)
T PRK10534 211 ----RDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH----N-VARLQEDHDNAAWLAEQLREA-GAD-VMRQ-DTNML 278 (333)
T ss_pred ----HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh----h-HHHHHHHHHHHHHHHHHHHhC-CCc-cCCC-CceEE
Confidence 5788888776643321 223456665555543 1 233334455678899999987 776 4344 68899
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
|++++.. +..++ .++++++||.+.|+. ++|++.+ ++++++++++++|++++.
T Consensus 279 ~~~~~~~------~~~~~-~~~l~~~gi~v~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 279 FVRVGEE------QAAAL-GEYMRERNVLINASP------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred EEECCch------hHHHH-HHHHHHcCeeecCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 9988631 34445 456677899999873 5788775 789999999999987764
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=232.84 Aligned_cols=325 Identities=13% Similarity=0.096 Sum_probs=242.0
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPR 141 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~ 141 (422)
..++++++++.+.... +. .....++.+.+.+.+.+.++.. ..+.++++++++++++.++..++++||+|++++
T Consensus 19 ~~~~~V~~a~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~ 91 (401)
T PLN02409 19 NIPERVLRAMNRPNED-----HR-SPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFR 91 (401)
T ss_pred CCCHHHHHHhcCCCCC-----CC-CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 5678898888664322 22 2345666767766666655532 234678899999999999999999999999999
Q ss_pred CCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC----CceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 142 PGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE----NTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 142 ~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
++|++. ...++..|.+++.++.++. ..+|++.+++.+++ +++++++++++||||.++|.+++.++++ |+++
T Consensus 92 ~~~~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~ 168 (401)
T PLN02409 92 IGQFSLLWIDQMQRLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQH 168 (401)
T ss_pred CCchhHHHHHHHHHcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhcc
Confidence 988654 4677788999999987543 34789999998875 6899999999999999988777766666 9999
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh------
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL------ 289 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~------ 289 (422)
|+++|+|++++. |..+.++..++.| +++.|.+|++++|. ++||++.+ ++.++++....
T Consensus 169 g~~~vvD~v~s~----g~~~id~~~~~~D---~~~~s~~K~l~~P~-G~G~l~~~--------~~~~~~~~~~~~~~~~~ 232 (401)
T PLN02409 169 PALLLVDGVSSI----GALDFRMDEWGVD---VALTGSQKALSLPT-GLGIVCAS--------PKALEASKTAKSPRVFF 232 (401)
T ss_pred CcEEEEEccccc----CCccccccccCcc---EEEEcCccccCcCC-CcceeEEC--------HHHHHHHhcCCCCCeec
Confidence 999999999975 3333344444443 77788899976532 59999986 34555543210
Q ss_pred ------------hh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----CceEEE
Q 014603 290 ------------NI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----GSMFVM 352 (422)
Q Consensus 290 ------------~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~ 352 (422)
.. .++++...+.++.++++...+..++.+.++++++++.+++.|+++ ++.+. .+. .+...+
T Consensus 233 ~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~-~~~~~~~s~~v~~ 310 (401)
T PLN02409 233 DWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLC-TKKPEWRSDTVTA 310 (401)
T ss_pred CHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeec-cCChhhcccceEE
Confidence 01 236777788888888887666788999999999999999999987 77644 332 223445
Q ss_pred EecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.++.. .+..++...+++++||.+.+|........|||+.. ++.+++..++.+|++++.+..
T Consensus 311 ~~~p~~-----~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 311 VVVPEG-----IDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred EeCCCC-----CCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 666532 25667777888889999999876544789999997 789999999999999998754
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=232.78 Aligned_cols=328 Identities=15% Similarity=0.133 Sum_probs=220.5
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
.+++|+.+.++ . +++.+.+++.+.........|.+ ...++|++++++++. +.++++++|++++..
T Consensus 6 ~~~~~~~~~~~----~-~~~~~~~a~~~~~~~~~~~~~~~--~~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~ 70 (353)
T PLN02721 6 RVVDLRSDTVT----K-PTDAMRAAMANAEVDDDVLGYDP--TALRLEEEMAKIFGK--------EAALFVPSGTMGNLI 70 (353)
T ss_pred hhhhhhccccc----C-CCHHHHHHHHhccCCCcccCCCH--HHHHHHHHHHHHhCC--------ceeEEecCccHHHHH
Confidence 46889999866 2 56888888876422222223433 368999999999942 335666677777777
Q ss_pred HHHHhcC-CCCEEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-------CCceEEEEeCC-C
Q 014603 126 ILTVLAR-PGANILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-------ENTVALVIINP-G 193 (422)
Q Consensus 126 ~~~~l~~-~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~i~~p-~ 193 (422)
++.++++ +||+|++++|+|..... .+...|.+++.++.+ .++.+|++.+++.++ +++++++++++ +
T Consensus 71 ~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~ 148 (353)
T PLN02721 71 SVLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHA 148 (353)
T ss_pred HHHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEEecccc
Confidence 7877777 99999999999865544 566788888888764 345689999999887 57888988875 7
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
||+|.+++.+++++|.++|+++|+++|+|++|.......... +...+..... .++.|+||+|++ ++|+++..+
T Consensus 149 np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~l~~---~~G~~~~~~-- 221 (353)
T PLN02721 149 NCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV-PVHRLVKAAD-SVSVCLSKGLGA---PVGSVIVGS-- 221 (353)
T ss_pred ccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-CHHHHhhhCC-EEEEecccccCC---ceeeEEecC--
Confidence 899999999999999999999999999999986422110011 1111111111 445579999754 357644332
Q ss_pred CcccchhHHHHHHhhhhhc-cCcchHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCce
Q 014603 274 GILQDSGIVDSIKSFLNIS-SDPATFIQGAV--PQILEKTEEEFFSKITDILRETADICCDRLKEIPCITC-PKKPEGSM 349 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~g~ 349 (422)
+++++.+....... +.+....+.++ ...++ .+.+.. ++..++++.+.+.|++++++.+ ...|. +.
T Consensus 222 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~ 290 (353)
T PLN02721 222 -----KSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQ----ENVPKL-EDDHKKAKLLAEGLNQIKGLRVNVAAVE-TN 290 (353)
T ss_pred -----HHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHhCCCcEEecCCcc-ce
Confidence 46777665554322 22222222222 22232 223333 3345677889999998877742 32343 56
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
++|++++... ..+..++..+| .++||.+.|+. .+++|++++ .+++++++++++|++++.
T Consensus 291 ~~~~~~~~~~---~~~~~~~~~~L-~~~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 291 IVYFDITDGS---RITAEKLCKSL-EEHGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred EEEEEccCCc---cccHHHHHHHH-HhCCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 7888886410 01456677776 47799999974 568999997 689999999999998765
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=234.78 Aligned_cols=331 Identities=16% Similarity=0.160 Sum_probs=229.9
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
++++++|++.+ |.++..+|.+.+++.+++..... ..|.+.....++++.+++++ + . +..++++
T Consensus 45 ~~~~~~~~s~d---ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~------g-~-~~~~~~~ 113 (407)
T PRK09064 45 EREVTVWCSND---YLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH------G-K-EAALVFT 113 (407)
T ss_pred CceEEEEECCC---CcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh------C-C-CcEEEEC
Confidence 46789999988 66788899999999998865322 12333445678888888887 2 2 3445556
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc----CCceEEEEeC
Q 014603 118 GCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD----ENTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~ 191 (422)
+|++++..++..+.. +++.|+.....|.+....+...+.++..++. .|++.+++.++ ++++++++++
T Consensus 114 sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~ 186 (407)
T PRK09064 114 SGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFES 186 (407)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeC
Confidence 667787777777654 6777777777777666666777776655442 26677777664 4678899999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEE
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
++|++|.+.+ +++|.++|+++|+++|+||+|+...+ .|... ....+. ++..++++||||.|+++| ||++
T Consensus 187 v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~--~~~~~~~~~~div~~t~sKa~g~~G---G~~~ 258 (407)
T PRK09064 187 VYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI--AERDGLMDRIDIIEGTLAKAFGVMG---GYIA 258 (407)
T ss_pred CCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh--HHhcCCCCCCeEEEEecchhhhccC---ceEe
Confidence 9999999854 88888899999999999999984333 22221 111121 123588899999998887 8988
Q ss_pred eeCCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++ +++++.+..... ++.+.++..+.++.++++...+ ....+++++++++++.+.|+++ ++. +..+
T Consensus 259 ~~--------~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~ 326 (407)
T PRK09064 259 GS--------AALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKE--SNEERERHQERAAKLKAALDAA-GIP-VMPN 326 (407)
T ss_pred cC--------HHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCC-CCCC
Confidence 75 467776654332 2234556677777777765321 1334677888999999999987 666 3233
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+.++++.++.. ....++..++++++||.+.+...+.. .+++||+++ ++++|++++++.|+++++++
T Consensus 327 -~~~iv~i~~~~~-----~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 327 -ESHIVPVMVGDP-----EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred -CCCEEEEEeCCH-----HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 355666655421 12456767776667999988654433 367999998 78999999999999998765
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=232.25 Aligned_cols=313 Identities=15% Similarity=0.120 Sum_probs=219.4
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEec
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~ 140 (422)
++++|.+++++.+..... ..|.+.....++++.+++++ + ++++++++||++++..++++++++||+|+++
T Consensus 8 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~~a~~~------g--~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~ 77 (338)
T cd06502 8 TGPTPEMLEAMAAANVGD--DVYGEDPTTAKLEARAAELF------G--KEAALFVPSGTAANQLALAAHTQPGGSVICH 77 (338)
T ss_pred CCCCHHHHHHHHhcccCC--cccCCCHHHHHHHHHHHHHh------C--CCeEEEecCchHHHHHHHHHhcCCCCeEEEe
Confidence 467899999998865432 25666667789999999988 3 5678888889999999999999999999999
Q ss_pred CCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-------CceEEEEeCCCCCcccccCHHHHHHHHH
Q 014603 141 RPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-------NTVALVIINPGNPCGNVYTYQHLQKIAE 210 (422)
Q Consensus 141 ~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~i~~p~nptG~~~~~~~l~~i~~ 210 (422)
.|+|..... .+...|.+++.++.+ .+.+|++.+++++++ +++++++++|+|| |.+++.+++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~ 153 (338)
T cd06502 78 ETAHIYTDEAGAPEFLSGVKLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISA 153 (338)
T ss_pred cCcceeeecCCcHHHHcCceEEeecCC---CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHH
Confidence 999976432 345578888888753 256899999998864 6889999999997 66779999999999
Q ss_pred HHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh
Q 014603 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN 290 (422)
Q Consensus 211 ~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (422)
+|+++|+++|+|++|.......... .+..+....+ +++.|+||+|+++| |+++..+ +++++++.....
T Consensus 154 ~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~~~~~~---g~~~~~~-------~~~~~~~~~~~~ 221 (338)
T cd06502 154 LAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVD-SVSFCLSKGGGAPV---GAVVVGN-------RDFIARARRRRK 221 (338)
T ss_pred HHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCC-EEEEeccccCCCcc---ceEEECC-------HHHHHHHHHHHH
Confidence 9999999999999985422111111 2222211122 56779999998887 5544322 567777766542
Q ss_pred h---ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHH
Q 014603 291 I---SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDM 367 (422)
Q Consensus 291 ~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 367 (422)
. +...+.+.+.++..+|+.. ...+..+++.++++++.+.|+++ ++. + .+..+.++.+.++... ....
T Consensus 222 ~~~~~~~~~~~~~~a~~~~L~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~~~~~~~~~v~~~~~~----~~~~ 291 (338)
T cd06502 222 QAGGGMRQSGFLAAAGLAALEND---LWLRRLRHDHEMARRLAEALEEL-GGL-E-SEVQTNIVLLDPVEAN----AVFV 291 (338)
T ss_pred HhCCChhhHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHHHHhc-CCC-c-ccccCCeEEEecCCcc----HHHH
Confidence 2 1234556777777777642 23455577778889999999988 444 3 3344556666664210 0112
Q ss_pred HHHHHHH--HhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 368 EFALKLA--KEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 368 ~~~~~l~--~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
++...+. .++|+.+.+.. .+++|++++ +++++++++++++++
T Consensus 292 ~l~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 292 ELSKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 2222222 15699987753 278999998 589999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=230.17 Aligned_cols=322 Identities=14% Similarity=0.131 Sum_probs=219.9
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCC--C-----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYS--S-----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPG 134 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~--~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g 134 (422)
.......+++.+.-......++. . ...+.++++.+|++++ . +.+.+++|+++++..++.+++++|
T Consensus 19 ~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g------~--~~~~i~~g~~~a~~~~~~~l~~~g 90 (370)
T TIGR02539 19 VLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLG------M--DEARVTHGAREGKFAVMHALCKEG 90 (370)
T ss_pred CCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhC------C--CceEEECChHHHHHHHHHHhhCCC
Confidence 45567777777764421111110 0 1125678888999883 2 457779999999999999999999
Q ss_pred CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-------CceEEEEeCCCCCcccccCHHHHHH
Q 014603 135 ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-------NTVALVIINPGNPCGNVYTYQHLQK 207 (422)
Q Consensus 135 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~i~~p~nptG~~~~~~~l~~ 207 (422)
|.|+++.+.|.+....++..|++++.++.+.+.++.+|++.|++.+++ +++++++++|+||+|... ++++
T Consensus 91 d~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~---~l~~ 167 (370)
T TIGR02539 91 DWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP---DAGK 167 (370)
T ss_pred CEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc---CHHH
Confidence 999999999877767788899999999876545678899999998752 578899999999999984 5778
Q ss_pred HHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh
Q 014603 208 IAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS 287 (422)
Q Consensus 208 i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
|.++|+++|+++|+|++|+... ........+. .++++|+||+++ +|.|+||++++ +++++.+..
T Consensus 168 i~~la~~~~~~livDea~~~g~----~~~~~~~~~~---di~v~s~sK~~~-~~g~~G~l~~~--------~~~i~~l~~ 231 (370)
T TIGR02539 168 VAKVCREKGVPLLLNCAYTVGR----MPVSAKEIGA---DFIVGSGHKSMA-ASGPCGVLGMS--------EEWEDIVLR 231 (370)
T ss_pred HHHHHHHcCCeEEEECccccCC----cCCCHHHcCC---CEEEeeCccccc-CCCCEEEEEEC--------HHHHhhhcc
Confidence 8889999999999999998631 1112222222 377799999986 56689999986 467777765
Q ss_pred hhhhc---------cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCceEEEEecCc
Q 014603 288 FLNIS---------SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP-KKPEGSMFVMVKLNY 357 (422)
Q Consensus 288 ~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~ 357 (422)
....+ .+.....+.++..+++.. .++++...+.++. ++++++.|+++ ++.++ ..|..++|++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~l~~~~~~~~~-~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~ 308 (370)
T TIGR02539 232 KSRYSPVKEVELLGCTSRGAPIVTMMASFPHV-VERVKRWDEEVKK-TRWFVAELEDI-GFIQLGQKPKEHDLVKFETPG 308 (370)
T ss_pred cccCCccceeeeecccccccHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHhC-CcEEEccCCCcCceEEEECCc
Confidence 44311 111112444444555431 3444444444444 45899999988 66521 246667888887753
Q ss_pred cc---ccCCCCHHHHHHHHHHhcCeE-EecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 358 SL---LEGINSDMEFALKLAKEESVI-VLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 358 ~~---~~~~~~~~~~~~~l~~~~gi~-v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
.. .........+...| .++||. +.++ .++++|+++. .++++++++++.|+++++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~L-~e~GI~~ir~~----~~~~iRis~~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 309 FHEIAQKHKRRGYFLYEEL-KKRGIHGIRSG----QTKYFKLSVYGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred hhHHhhhhccccHHHHHHH-HhCCCccccCC----cceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 10 00011223454544 667997 6543 3569999964 68999999999999987764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=229.74 Aligned_cols=327 Identities=16% Similarity=0.142 Sum_probs=225.6
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--CCC----CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--NCY----SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.+++|+..+ +.+.+.+|++.+++.+.+.+... ..| +......++++.++++++ . +..++++++
T Consensus 2 ~~~~~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~--~~~iv~~sg 70 (349)
T cd06454 2 KVLNFCSND---YLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG------K--EAALVFSSG 70 (349)
T ss_pred CceecccCC---ccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhC------C--CCEEEeccH
Confidence 357887776 56677789999999999975321 112 222334677777777762 2 245666677
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-----CceEEEEeCCCC
Q 014603 120 TQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-----NTVALVIINPGN 194 (422)
Q Consensus 120 ~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~p~n 194 (422)
++++.+++++++++||.|++++|+|.++...++..|.+++.++. .|.+.+++.+++ +++++++++++|
T Consensus 71 ~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~ 143 (349)
T cd06454 71 YAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYS 143 (349)
T ss_pred HHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEecccc
Confidence 88988888888999999999999999988888888988876642 466777777653 456777889999
Q ss_pred CcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP-FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 195 ptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
|||... ++++|+++|+++|+++|+|++|+...+.... ..........+.+++++|+||+++.+| ||++.+
T Consensus 144 ~tG~~~---~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~--- 214 (349)
T cd06454 144 MDGDIA---PLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGS--- 214 (349)
T ss_pred CCCCcc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CEEECC---
Confidence 999984 5788899999999999999999743222111 000111122345699999999987665 888875
Q ss_pred CcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE
Q 014603 274 GILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF 350 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 350 (422)
+++.+.+..... ..++.++..+.++.++++...+ .+..+++++++++.+.+.|+++ ++.+. .+.++.+
T Consensus 215 -----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~ 285 (349)
T cd06454 215 -----KELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVG-GSPSHII 285 (349)
T ss_pred -----HHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCcE
Confidence 356666654332 1234556667777777765322 4567788999999999999887 66533 3333444
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---CCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
.++.++.. .+..++...+.+ +||.+.++.... ..+++|++++ .+++++++++++|+++
T Consensus 286 ~~~~~~~~-----~~~~~~~~~L~~-~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 286 PPLIGDDP-----AKAVAFSDALLE-RGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEEeCCCh-----HHHHHHHHHHHh-CCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 44434311 135667677655 499998864321 1478999998 6899999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=230.71 Aligned_cols=345 Identities=18% Similarity=0.179 Sum_probs=243.8
Q ss_pred CCCCceeecCCCCCCCCCCCCc---HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTA---SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~---~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.|-+++.|.++++-. .+..+ ..+.+++.+.+..+. ..|.+..+.++||++++++++ .+++++|+||
T Consensus 9 ~g~n~~~l~~~~v~i--Dlltds~t~ams~~~~~a~~~gd-~~Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~G 77 (431)
T cd00617 9 AGYNVFLLRSEDVYI--DLLTDSGTGAMSDYQWAAMMLGD-EAYAGSKSFYDLEDAVQDLFG--------FKHIIPTHQG 77 (431)
T ss_pred cCCCEEeCCCCCcCC--CCCCCCCcHHHHHHHHHHHHhCC-CccCCCCCHHHHHHHHHHHHC--------CCeEEEcCCH
Confidence 588889999998721 12333 355555555554443 479999999999999999993 3589999999
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC--------CcccCHHHHHHhhcCC----ceEE
Q 014603 120 TQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK--------GWEVDLDAVEALADEN----TVAL 187 (422)
Q Consensus 120 ~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~d~~~l~~~~~~~----~~~i 187 (422)
++|+.+++.++++|||.| +++|.|..+.......|..++.+++++.. .+.+|++.|++.++++ ++++
T Consensus 78 t~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I 156 (431)
T cd00617 78 RGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYI 156 (431)
T ss_pred HHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEE
Confidence 999999999999999987 68899999988889999999999986542 2459999999998765 6788
Q ss_pred EEeCCCCCc-ccccCHHHHHHHHHHHHHcCcEEEEccccccc--cc-----CCCCCCCccccCCCCCeEEEecCccccCC
Q 014603 188 VIINPGNPC-GNVYTYQHLQKIAETAKKLGIMVIADEVYDHL--AF-----GNTPFVPMGVFGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 188 ~i~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~--~~-----~~~~~~~~~~~~~~~~~i~i~s~sK~~~~ 259 (422)
+++.|+||+ |..++.+++++|.++|++||++||.|+++... .+ .|....++..+ ++.++|++|.+.+
T Consensus 157 ~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei-----~~e~~s~sd~~~m 231 (431)
T cd00617 157 VLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEI-----AREMFSYADGCTM 231 (431)
T ss_pred EEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHH-----HHHhhccCCEEEE
Confidence 999999998 99999999999999999999999999996531 11 12111222211 2334555555555
Q ss_pred CCce------eEEEEeeCCCCcccchhHHHHHHhhhh-----h-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 260 PGWR------LGWLVTSDPNGILQDSGIVDSIKSFLN-----I-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 260 ~G~r------~G~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
.|++ .||+++++ +++.++++.... . .++.+.....++...|++..+ .+...+++ ++++
T Consensus 232 S~~K~~~~~~GG~i~~~d-------~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~--~~~l~~~~-~~r~ 301 (431)
T cd00617 232 SAKKDGLVNIGGFLALRD-------DELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE--EDYLRHRV-EQVR 301 (431)
T ss_pred EeecCCCCccceEEEeCc-------HHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc--HHHHHHHH-HHHH
Confidence 5555 46888864 457777764321 1 112233333444445654211 12233333 3558
Q ss_pred HHHHHhhcCCCCCCCCCCCCceEEEEecCccc----ccCCCCHHHHHHHHHHhcCeEEec-CCCC-C-----------CC
Q 014603 328 ICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL----LEGINSDMEFALKLAKEESVIVLP-GITV-G-----------LK 390 (422)
Q Consensus 328 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~gi~v~~-g~~~-~-----------~~ 390 (422)
++.+.|++. |+. +..|.+|+++|+.++.-. ... .++.+++.+|+++.||.+.- |... + .-
T Consensus 302 ~l~~~L~~~-G~~-v~~P~Ggh~v~~d~~~~~~~~~~~~-~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~ 378 (431)
T cd00617 302 YLGDRLDEA-GVP-IVEPAGGHAVFIDAREFLPHIPQEQ-FPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPEL 378 (431)
T ss_pred HHHHHHHHC-CCC-ccCCCcceEEEEEhHHhcCCCCccc-CcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCcc
Confidence 888999988 888 448999999999876420 011 14778888899999999754 3311 1 02
Q ss_pred CeEEEEec---cChHHHHHHHHHHHHHHHH
Q 014603 391 DWLRITFA---VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 391 ~~iRis~~---~~~~~l~~~~~~l~~~~~~ 417 (422)
..+|+++. .+.+.++..++.|..++++
T Consensus 379 ~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 379 ELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred ceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 67999997 5789999999999988765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=234.04 Aligned_cols=334 Identities=14% Similarity=0.095 Sum_probs=235.6
Q ss_pred eecCCCCCCCCCCCCcHHHHHHHHHHhhCCC----CCCCCC----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 49 PLGHGDPSAFPSFRTASVAVDAIVHSVRSAR----FNCYSS----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 49 ~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~----~~~y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|+++... +++|+.+.+++.+.+.... ...|.. .....++|+.++++++. ...++|++++|++
T Consensus 2 yld~a~~~----~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~v~~~~g~t 72 (376)
T TIGR01977 2 YFDNAATT----YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-----PSSAHVVFTNNAT 72 (376)
T ss_pred CccCcccC----CCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCc-----CCCCeEEEeCCHH
Confidence 45655522 5778899999988876532 112322 14567889999999842 1335899999999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC 196 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt 196 (422)
++++.++.+++++||+|++..++|.++. ..++..|.+++.++.+. ++.+|++.+++.++++++++++++|+|||
T Consensus 73 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~n~t 150 (376)
T TIGR01977 73 TALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKTNTKLIVVSHASNVT 150 (376)
T ss_pred HHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCCCCeEEEEECCCCCc
Confidence 9999999999999999999999997653 34555688988888753 45689999999998889999999999999
Q ss_pred ccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcc
Q 014603 197 GNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 276 (422)
Q Consensus 197 G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~ 276 (422)
|.+++ +++|.++|+++|+++|+|++++.. .....+...+.| +++.|++|++++|. .+|++++++.....
T Consensus 151 G~~~~---~~~i~~l~~~~~~~livD~a~~~g----~~~~~~~~~~~D---~~~~s~~K~l~~p~-g~g~l~~~~~~~~~ 219 (376)
T TIGR01977 151 GTILP---IEEIGELAQENGIFFILDAAQTAG----VIPIDMTELAID---MLAFTGHKGLLGPQ-GTGGLYIREGIKLK 219 (376)
T ss_pred cccCC---HHHHHHHHHHcCCEEEEEhhhccC----ccCCCchhcCCC---EEEecccccccCCC-CceEEEEcCCcCcC
Confidence 99976 567788899999999999999862 222233333333 88899999875442 25777665432100
Q ss_pred cchhHHH-------HH---H--hhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014603 277 QDSGIVD-------SI---K--SFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344 (422)
Q Consensus 277 ~~~~~~~-------~~---~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 344 (422)
+.... .+ . ......++++.....++.++++...+...+...++.+++.+.+.+.|++++++.+. .
T Consensus 220 --~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~-~ 296 (376)
T TIGR01977 220 --PLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIY-G 296 (376)
T ss_pred --ceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEe-C
Confidence 00000 00 0 00111245666677777777776555667788889999999999999988787643 3
Q ss_pred CC----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC----------CCCeEEEEec--cChHHHHHHH
Q 014603 345 PE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----------LKDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 345 ~~----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----------~~~~iRis~~--~~~~~l~~~~ 408 (422)
|. .+..+++.++.. +..++...|.+++||.+.+|..+. ..+.+|++++ ++++|++.++
T Consensus 297 ~~~~~~~~~~v~~~~~~~------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~ 370 (376)
T TIGR01977 297 PADPANRVGVVSFTVEGI------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLL 370 (376)
T ss_pred CCCccccCCeEEEEECCC------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHH
Confidence 21 134555566431 456666666555599999987663 2478999998 7899999999
Q ss_pred HHHHH
Q 014603 409 GRMKA 413 (422)
Q Consensus 409 ~~l~~ 413 (422)
++|++
T Consensus 371 ~~l~~ 375 (376)
T TIGR01977 371 EALSE 375 (376)
T ss_pred HHHhh
Confidence 99875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=231.74 Aligned_cols=339 Identities=16% Similarity=0.102 Sum_probs=232.3
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC------CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA------RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~------~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
...++|.-+. -..+|.+++++.+.+... ....|....+.+++++.+++++.+.+| .+...|+++ |
T Consensus 19 ~~~~~~~~~~------~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g--~~~~~v~~~-s 89 (402)
T cd00378 19 RETLELIASE------NFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFG--AEYANVQPH-S 89 (402)
T ss_pred HhCeeeeccC------CcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhC--CCceeeecC-C
Confidence 4578886665 245789999998765321 122444555667777776666655554 333445544 5
Q ss_pred HHHHHHHHHHHhcCCCCEEEecCCCccchHHH-----HhhCCCeEEEeeccCC-CCcccCHHHHHHhhc-CCceEEEEeC
Q 014603 119 CTQAIEVILTVLARPGANILLPRPGFPYYEAR-----ATHSHLEVRHFDLLPA-KGWEVDLDAVEALAD-ENTVALVIIN 191 (422)
Q Consensus 119 ~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~-~~~~~i~i~~ 191 (422)
|++|+..++.+++++||+|++++|+|.++... ++..|.++..+++..+ +++.+|++.+++.+. ++++++++++
T Consensus 90 gt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~ 169 (402)
T cd00378 90 GSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGA 169 (402)
T ss_pred cHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecC
Confidence 68999999999999999999999999765332 4556776777766543 257899999999884 5788888888
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccc-cccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY-DHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
|+||+ . .++++|+++|+++|+++|+|++| .++.+.|....++. .. + ++++|+||++ +|+|.||++++
T Consensus 170 ~~~~~--~---~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~--d-v~~~s~sK~l--~G~~gg~i~~~ 237 (402)
T cd00378 170 SAYPR--P---IDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GA--D-VVTTTTHKTL--RGPRGGLILTR 237 (402)
T ss_pred cccCC--C---cCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CC--c-EEEeccccCC--CCCCceEEEec
Confidence 87764 3 35889999999999999999996 33333332222222 22 2 7899999985 78889999986
Q ss_pred CCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 271 DPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
+ +++.+++...... .+++....+.++..++......+.++.+++++++++.+.+.|+++ ++.+...|.++
T Consensus 238 ~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 309 (402)
T cd00378 238 K-------GELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDN 309 (402)
T ss_pred c-------HHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCC
Confidence 3 3577777654421 223333344444444543323356778888999999999999987 77643346678
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC------CCCeEEEEec--c----ChHHHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------LKDWLRITFA--V----EPSALEDGLGRMKAFYD 416 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~------~~~~iRis~~--~----~~~~l~~~~~~l~~~~~ 416 (422)
+++|+.++... .+.. .+..+++++||.+.++..+. ..+++|++++ + ++++++.+++.|+++++
T Consensus 310 ~~v~v~~~~~~----~~~~-~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 310 HLVLVDLRPKG----ITGK-AAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred eEEEEeCCccC----CCHH-HHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 99999986321 1233 34455678899998643221 2468999986 2 58999999999999876
Q ss_pred H
Q 014603 417 R 417 (422)
Q Consensus 417 ~ 417 (422)
+
T Consensus 385 ~ 385 (402)
T cd00378 385 D 385 (402)
T ss_pred c
Confidence 5
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=229.37 Aligned_cols=336 Identities=16% Similarity=0.185 Sum_probs=231.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|....+.++ .+|++.+++.+++++.. ... .....+++..+++++.+..+ .+.++++++|++
T Consensus 26 ~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~--~~~-~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~ 97 (377)
T PRK02936 26 NNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIW--HVS-NLFTNSLQEEVASLLAENSA----GDLVFFCNSGAE 97 (377)
T ss_pred CCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcc--ccc-cccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHH
Confidence 36889999999986655554 78999999999997632 122 23456889999999976432 358999999999
Q ss_pred HHHHHHHHhc-CCC-CEEEecCCCccchHHHHh-hCCCeEE---EeeccCCCCc--ccCHHHHHHhhcCCceEEEEeCCC
Q 014603 122 AIEVILTVLA-RPG-ANILLPRPGFPYYEARAT-HSHLEVR---HFDLLPAKGW--EVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 122 a~~~~~~~l~-~~g-d~Vl~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~--~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
|++.+++... -+| ++|++.+++||+...... ..+.... ..++.+...+ ..|++.+++.+.++++++++..++
T Consensus 98 a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~ 177 (377)
T PRK02936 98 ANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQ 177 (377)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEeccc
Confidence 9999998542 234 679999999987643322 2221110 1111110000 017889999888778888777778
Q ss_pred CCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 194 NPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 194 nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
+++|.. .+++++++|.++|++||+++|+||+|.++.++|... .+...+..++ +.++||.++ +|+|+||++++
T Consensus 178 ~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-~~~~~~~~~d---i~t~sK~l~-~G~~ig~v~~~-- 250 (377)
T PRK02936 178 GEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AYEQFGLDPD---IVTVAKGLG-NGIPVGAMIGK-- 250 (377)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HHHhhCCCCc---EEEEccccc-CCCccEEEEEc--
Confidence 888876 578999999999999999999999999887766432 2222332223 336899986 89999999986
Q ss_pred CCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCC
Q 014603 273 NGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE----IPCITCPKKPEG 347 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~ 347 (422)
+++.+.+.... ..+.+.+++.++++.++|+.... ++..++++++.+.+++.|++ ++.+. . ....
T Consensus 251 ------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~-v~~~ 319 (377)
T PRK02936 251 ------KELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVK-N-IRGK 319 (377)
T ss_pred ------HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEE-e-Eeec
Confidence 46777765433 23346788999999999976421 23344555556666665554 33322 1 1234
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
|.++|+.++. +...+.. .+.++||.+.|+. .+++|++++ .+++++++++++|++++
T Consensus 320 g~~~~i~~~~-------~~~~~~~-~l~~~gv~v~~~g----~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 320 GLMIGIECTE-------EVAPVIE-QLREEGLLVLSAG----PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ceEEEEEecc-------hHHHHHH-HHHHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 7889988863 2444544 4567799998853 478999974 78999999999998763
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=230.42 Aligned_cols=337 Identities=15% Similarity=0.130 Sum_probs=234.1
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC--------CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS--------STVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~--------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
.++|+++.++ ++++.+++++.+.+.....+... ....+.++|+.+++++ ++++++|++++|
T Consensus 4 ~~yld~aa~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g 72 (402)
T TIGR02006 4 PIYLDYAATT-----PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI------GADSREIVFTSG 72 (402)
T ss_pred cEEeeCCcCC-----CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCC
Confidence 4788888755 67789999998887532111110 0123566788888887 557889999999
Q ss_pred HHHHHHHHHHHhc----CCCCEEEecCCCccchHHH---HhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeC
Q 014603 119 CTQAIEVILTVLA----RPGANILLPRPGFPYYEAR---ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191 (422)
Q Consensus 119 ~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~ 191 (422)
+|++++.++.++. ++||+|+++.++|+++... ++..|.+++.++.++ ++.+|++.+++.++++++++++++
T Consensus 73 ~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~v~~ 150 (402)
T TIGR02006 73 ATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRDDTILVSIMH 150 (402)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEEC
Confidence 9999999887753 6889999999999875443 344688888888753 456899999999988899999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
++||||... ++++|.++|+++|+++++|++++. |..+..+...+.| +++.|.+|.++.+| +|++++++
T Consensus 151 ~~n~tG~~~---~~~~I~~l~~~~g~~livD~a~a~----g~~~~~~~~~~~D---~~~~s~~K~~gp~G--~G~l~~~~ 218 (402)
T TIGR02006 151 VNNEIGVIQ---DIAAIGEICRERKVFFHVDAAQSV----GKIPINVNELKVD---LMSISGHKIYGPKG--IGALYVRR 218 (402)
T ss_pred CCcCceecc---cHHHHHHHHHHcCCEEEEEcchhc----CCcccCccccCCC---EEEEehhhhcCCCc--eEEEEEcc
Confidence 999999995 577888999999999999999976 3333344444443 88889999876556 88888764
Q ss_pred CCCcccchhHHHHH-HhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--Cc
Q 014603 272 PNGILQDSGIVDSI-KSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GS 348 (422)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g 348 (422)
.....-.+ +.... .......++++.....++..+++... .+++...++.+++++.+.+.|++++++.+...+. ..
T Consensus 219 ~~~~~~~~-~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p 296 (402)
T TIGR02006 219 KPRVRLEA-LIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVP 296 (402)
T ss_pred CCCCCCCc-eecCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC
Confidence 22110000 00000 00011234667777777777776533 4677788899999999999999887765321111 11
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHHH
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALEDG 407 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~~ 407 (422)
..+.+.++.. +..++...+ .++.+..|..|.. .+++|+|++ ++++|++++
T Consensus 297 ~~~~v~f~~~------~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l 367 (402)
T TIGR02006 297 GNLNVSFNYV------EGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYA 367 (402)
T ss_pred CeEEEEEeCc------CHHHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHH
Confidence 1112333311 334443332 4888888876642 378999998 789999999
Q ss_pred HHHHHHHHHHhc
Q 014603 408 LGRMKAFYDRHA 419 (422)
Q Consensus 408 ~~~l~~~~~~~~ 419 (422)
++.|.+++++++
T Consensus 368 ~~~l~~~~~~~~ 379 (402)
T TIGR02006 368 VKLVKSAIDKLR 379 (402)
T ss_pred HHHHHHHHHHHH
Confidence 999999887753
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=205.02 Aligned_cols=287 Identities=20% Similarity=0.300 Sum_probs=223.5
Q ss_pred CCCCCCEEEecCHHHHHHHHHHHhcCCC-CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC--C
Q 014603 107 KLSPDDVYLTLGCTQAIEVILTVLARPG-ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--N 183 (422)
Q Consensus 107 ~~~~~~i~~~~g~~~a~~~~~~~l~~~g-d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--~ 183 (422)
+..+++|+++.|+.+.+.+++++.+.|| ++|+.-.|+|.-|...+...+++++.+|+++ ++.++.+.+.+.++. .
T Consensus 83 pLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~ 160 (375)
T KOG0633|consen 83 PLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSK 160 (375)
T ss_pred CCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhcccc
Confidence 6788999999999999999999999999 8999999999988888889999999999976 577999999887643 5
Q ss_pred ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 184 TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 184 ~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
.+.+++++|+||||..+..+++.+|.+--. |.++++||+|-.|. |. ...+.-....++++++.++||.||++|+|
T Consensus 161 iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFs--g~-~S~~~lV~kYpNLivlqTlSKsfGLAGiR 235 (375)
T KOG0633|consen 161 IKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFS--GV-ESRMKLVKKYPNLIVLQTLSKSFGLAGIR 235 (375)
T ss_pred ceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeec--cc-cccchHhHhCCceeehhhhhhhcCcceeE
Confidence 789999999999999999999999988443 79999999998854 41 11233344567899999999999999999
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 343 (422)
+|+..++ ..+.+-+....... +.+.....++.+++.+..-..++..+..+.+.+.++...|.++|++.-..
T Consensus 236 vG~~~~~--------~~ia~iln~~KaPY-NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~ 306 (375)
T KOG0633|consen 236 VGYGAFP--------LSIAEILNRAKAPY-NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYP 306 (375)
T ss_pred eeccccc--------HHHHHHHHhccCCc-cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCC
Confidence 9999886 34666555555432 45556667777788754456788888888888999999999998776444
Q ss_pred CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec-CCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 344 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
.+..++|+++++..+. ..-+..+...++-+.||.|+- |+..+..+++||+.+++++. .-+++.|++
T Consensus 307 gg~daNFiLi~v~~~~---n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Een-tvL~k~~K~ 373 (375)
T KOG0633|consen 307 GGSDANFILIEVTGGD---NGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEEN-TVLMKCLKQ 373 (375)
T ss_pred CcccccEEEEEEcCCC---cHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCcccc-hHHHHHHHh
Confidence 6677889998886431 112455666667778999985 55555689999999976432 233444443
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=227.61 Aligned_cols=333 Identities=17% Similarity=0.142 Sum_probs=229.1
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
++.+++|++++ |.++..+|++++++.+++...... .+.......++++.++++++ .+..++++
T Consensus 44 ~~~~~~~~sn~---ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--------~~~~~~~~ 112 (406)
T PRK13393 44 PREVTVWCSND---YLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG--------KEAALLFT 112 (406)
T ss_pred CccEEEeeccc---ccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC--------CCcEEEeC
Confidence 46789999887 667778999999999998763211 11112235678888888872 24666666
Q ss_pred CHHHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc----CCceEEEEeC
Q 014603 118 GCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD----ENTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~ 191 (422)
+|++|+..++..+.+ +|+.|++....|..........+.+++.++. .|++.+++.++ ++++++++++
T Consensus 113 SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~ 185 (406)
T PRK13393 113 SGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFES 185 (406)
T ss_pred CcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcC
Confidence 667799999987655 6787777788887777777777777666553 25566666553 3567888889
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC-CeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV-PVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
++|++|.+.+ +++|.++|+++|+++|+||+|+...++..+.......+..+ ..++++||||.|+++| ||++++
T Consensus 186 v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~ 259 (406)
T PRK13393 186 VYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GYITGS 259 (406)
T ss_pred CCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ceeeCC
Confidence 9999999965 88888999999999999999974333222111111122112 2477799999998888 898875
Q ss_pred CCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++.+.+..... .+.+.++..++++.++|+...+. ...++++.++.+++.+.|+++ ++.++ .+ .
T Consensus 260 --------~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~-~ 326 (406)
T PRK13393 260 --------AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKAS--SAERERHQDRVARLRARLDKA-GIPHL-PN-P 326 (406)
T ss_pred --------HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-CC-C
Confidence 467776665432 23455667788888888753222 123456778888999999886 66522 33 3
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.++.+.++.. ....++...+++++||.+.++..+.. .+++||+++ ++++++++++++|+++++++
T Consensus 327 ~~i~~v~~~~~-----~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 327 SHIVPVMVGDP-----VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred CCeEEEEeCCH-----HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 55555544321 02456666666657999998755432 368999998 78999999999999988764
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=225.43 Aligned_cols=322 Identities=14% Similarity=0.125 Sum_probs=220.0
Q ss_pred CCCcHHHHHHHHHHhhCCCCC-------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCC
Q 014603 61 FRTASVAVDAIVHSVRSARFN-------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP 133 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~-------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~ 133 (422)
-+..+++.+++.+........ .+.......++++++++++ ++ +++++++|+++++..++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~--~~i~~~~g~t~al~~~l~~~~~~ 82 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL------GM--DEARVTPGAREGKFAVMHSLCEK 82 (361)
T ss_pred CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc------CC--ceEEEeCCHHHHHHHHHHHhcCC
Confidence 366788999998887431110 1111134678999999988 33 78999999999999999999999
Q ss_pred CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-------CCceEEEEeCCCCCcccccCHHHHH
Q 014603 134 GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-------ENTVALVIINPGNPCGNVYTYQHLQ 206 (422)
Q Consensus 134 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-------~~~~~i~i~~p~nptG~~~~~~~l~ 206 (422)
||+|+++.++|.+....++..|++++.++.++..++.+|++.+++.++ ++++++++++|+||||.. .+++
T Consensus 83 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~---~~~~ 159 (361)
T cd06452 83 GDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNL---HDAK 159 (361)
T ss_pred CCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeee---ccHH
Confidence 999999999988777778889999999988654456799999998775 367899999999999988 6788
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH
Q 014603 207 KIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286 (422)
Q Consensus 207 ~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 286 (422)
+|.++|+++|+++|+|++|+. +....+...++. .++++|+||+++ ++.|+||++++ +++++++.
T Consensus 160 ~i~~~~~~~~~~vivD~a~~~----g~~~~~~~~~~~---d~~~~s~~K~l~-~~~~~G~l~~~--------~~~~~~l~ 223 (361)
T cd06452 160 KIAKVCHEYGVPLLLNGAYTV----GRMPVSGKELGA---DFIVGSGHKSMA-ASAPIGVLATT--------EEWADIVF 223 (361)
T ss_pred HHHHHHHHcCCeEEEECCccc----CCcCCCHHHcCC---CEEEecCCcccc-CCCCeEEEEEC--------HHHHHHHh
Confidence 999999999999999999975 221122223332 389999999986 45599999986 35667665
Q ss_pred hhhhh---------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCceEEEEecC
Q 014603 287 SFLNI---------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK-KPEGSMFVMVKLN 356 (422)
Q Consensus 287 ~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~~~~~~~~ 356 (422)
..... ..+.....+.++.++++.. ...++.. .+..++++++.+.|++++++.++. .+....++.++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~-~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~ 301 (361)
T cd06452 224 RTSQMFKIKEVELLGCTLRGAPLVTLMASFPHV-KERVKRW-DEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETP 301 (361)
T ss_pred ccccccccceeeeeccccCchHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcC
Confidence 43321 0111112233334444321 1223333 333345578899999998876331 2334556666654
Q ss_pred cccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHH
Q 014603 357 YSLL---EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 357 ~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~ 415 (422)
.... .......++...| +++||.+.. .+..+++|++.. .++++++.+++.|+++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~---~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 302 SFDEIAKKHKRRGYFLYSEL-KKRGIHGIK---PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CcchhhhhccccchhHHHHH-HHcCceEEc---CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 1000 0001223566666 556998532 234568999984 68899999999998654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-28 Score=228.81 Aligned_cols=335 Identities=18% Similarity=0.160 Sum_probs=225.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.++||..|......+ ..+|.+.+++.++++..... .+.......++.++++++. ..+.++++++|+
T Consensus 37 ~~G~~~lD~~~g~~~~~lG-h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs 107 (396)
T PRK04073 37 PEGNRYMDMLSAYSAVNQG-HRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT--------GKDMVLPMNTGA 107 (396)
T ss_pred CCCCEEEEcCCCHHhccCC-CCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC--------CCCeEEEcCChH
Confidence 3688999998886553222 45799999999998753221 1111112234555555543 236899999999
Q ss_pred HHHHHHHHHhcC---------CC-CEEEecCCCccchHHHHhh-CCCeEE---EeeccCC---CCcccCHHHHHHhhcCC
Q 014603 121 QAIEVILTVLAR---------PG-ANILLPRPGFPYYEARATH-SHLEVR---HFDLLPA---KGWEVDLDAVEALADEN 183 (422)
Q Consensus 121 ~a~~~~~~~l~~---------~g-d~Vl~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~---~~~~~d~~~l~~~~~~~ 183 (422)
+|++.++..... +| ++|+..+.+||+....+.. .+.... ..+..+. -.+ .|++.+++.++++
T Consensus 108 eA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~i~~~ 186 (396)
T PRK04073 108 EAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-GDLEALKAAITPN 186 (396)
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-CCHHHHHHhcccC
Confidence 999999887631 34 6889888888876543322 221100 0000000 001 2788999888777
Q ss_pred ceEEEEeCCCCCcccccCH-HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 184 TVALVIINPGNPCGNVYTY-QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 184 ~~~i~i~~p~nptG~~~~~-~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
++++++..++||+|.+++. +++++|.++|+++|+++|+||+|.++.++|.... ....+..++ +.++||.++++|+
T Consensus 187 ~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~-~~~~~~~pd---i~~~sK~lg~gg~ 262 (396)
T PRK04073 187 TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFA-CDWDNVTPD---MYILGKALGGGVF 262 (396)
T ss_pred eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH-hhhcCCCCC---EEEecccccCCCC
Confidence 8777777778999998765 4699999999999999999999998776654221 111222222 3357899998889
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC--CCC
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI--PCI 339 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~ 339 (422)
|+||++++ +++++.+.... ..+.+.+++.++++.++|+...+ +...++.+++.+++.+.|+++ +.+
T Consensus 263 ~ig~~~~~--------~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~i 331 (396)
T PRK04073 263 PISCVAAN--------RDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEE---EKLPERSLELGEYFKEQLKEIDNPMI 331 (396)
T ss_pred cceEEEEc--------HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 99999986 46777765432 23446788999999999975322 234456667788888888875 223
Q ss_pred CCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 340 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
. . .+..|.++++.++. ++.++..++ .++||.+.+.. .+++|++++ .+++++++++++|++++
T Consensus 332 ~-~-~~~~g~~~~~~~~~-------~~~~~~~~l-~~~Gv~~~~~~----~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 332 K-E-VRGRGLFIGVELNE-------PARPYCEAL-KEEGLLCKETH----ETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred c-c-eecceEEEEEEecc-------hHHHHHHHH-HHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 2 2 23346778887753 355666665 55699997642 478999975 79999999999999875
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=226.61 Aligned_cols=336 Identities=17% Similarity=0.180 Sum_probs=228.0
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.+|||..|....+.++ .+|++.+++.+++.+.... .........++.+.++++. ..+.++++++|+
T Consensus 37 ~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~sGs 107 (403)
T PRK05093 37 QQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT--------FAERVFFANSGA 107 (403)
T ss_pred CCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC--------CCCEEEEeCchH
Confidence 36888999988865544554 7899999999998752111 1111111234444444432 236899999999
Q ss_pred HHHHHHHHHhc--------CCCCEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCCcccCHHHHHHh
Q 014603 121 QAIEVILTVLA--------RPGANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKGWEVDLDAVEAL 179 (422)
Q Consensus 121 ~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d~~~l~~~ 179 (422)
+|++.+++... ...++|+..+.+||+....+...+. ++..++ .-|++.+++.
T Consensus 108 eA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~ 180 (403)
T PRK05093 108 EANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVP-------FNDLAAVKAV 180 (403)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeC-------CCCHHHHHHH
Confidence 99999998642 1236788889889886543322111 111111 1278899988
Q ss_pred hcCCceEEEEeCCCCCccccc--CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc
Q 014603 180 ADENTVALVIINPGNPCGNVY--TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW 257 (422)
Q Consensus 180 ~~~~~~~i~i~~p~nptG~~~--~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~ 257 (422)
+.+++++++++ |.||+|.++ +.+.+++|.++|++||+++|+||+|+++.++|... +....+..++ +.|+||.+
T Consensus 181 l~~~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~s~sK~l 255 (403)
T PRK05093 181 IDDHTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AYMHYGVTPD---ILTSAKAL 255 (403)
T ss_pred hcCCeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcCCCCC---EEEecccc
Confidence 87666666555 877777654 88999999999999999999999999887777532 2222222222 56889998
Q ss_pred CCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 258 IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 258 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
+ +|+|+||++++ +++++.+.... ..+.+.+++.|+++.++|+... -.+..++++++.+.+.+.|+++
T Consensus 256 ~-~G~rig~vv~~--------~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~L~~~ 323 (403)
T PRK05093 256 G-GGFPIGAMLTT--------AEIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN---TPEVLEGVKARRQRFVDGLQKI 323 (403)
T ss_pred c-CCcceEEEEEc--------HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHH
Confidence 6 89999999996 46777775432 3345678889999999886532 2345577888888888888875
Q ss_pred C-CCCC-CCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHH
Q 014603 337 P-CITC-PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 337 ~-~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
. ...+ ...+..|.++|+.++... ...+.++...++ ++||.+.|+. .+++|++++ .++++|++++++|.
T Consensus 324 ~~~~~~~~~~~~~G~~~~~~l~~~~---~~~~~~~~~~l~-~~Gv~v~~~g----~~~lRl~~~~~~~~~~i~~~~~~l~ 395 (403)
T PRK05093 324 NQKYGVFSEIRGMGLLIGAELKPQY---KGRARDFLNAAA-EEGVMVLVAG----PDVLRFAPSLVIEEADIDEGLARFE 395 (403)
T ss_pred HhhCCCeEeEeeCceEEEEEecCcc---hhHHHHHHHHHH-HCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 1111 123456889998886321 012456666664 4699998743 478999876 68999999999999
Q ss_pred HHHHHh
Q 014603 413 AFYDRH 418 (422)
Q Consensus 413 ~~~~~~ 418 (422)
+++.++
T Consensus 396 ~~l~~~ 401 (403)
T PRK05093 396 KAVAKV 401 (403)
T ss_pred HHHHHh
Confidence 998764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=232.20 Aligned_cols=347 Identities=18% Similarity=0.182 Sum_probs=227.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|..+|||..|......+ ..+|.+.+++.+++... ..|....+..+....+++.+.+.++ ...+++++++|+++|
T Consensus 34 dG~~~id~~~~~~~~~lG-~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgsea 108 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLG-HNHPEVVEALKEQLAKL--THFSLGFFYNEPAVELAELLLALTP--EGLDKVFFVNSGTEA 108 (413)
T ss_pred CCCEEEEcCccHHhhccC-CCCHHHHHHHHHHHHhC--cCccCcccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHH
Confidence 688999999875432222 26889999999998653 2444322233444444444444333 357899999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhhCC-------------CeEEEeeccCC----CCcccCHHHHHHhhcC-
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATHSH-------------LEVRHFDLLPA----KGWEVDLDAVEALADE- 182 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~----~~~~~d~~~l~~~~~~- 182 (422)
+..+++.+. .++++|++.+++|+++...+.... .++..++.+.. ..+..|++.|++.+++
T Consensus 109 ~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 188 (413)
T cd00610 109 VEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH 188 (413)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC
Confidence 999998773 567999999999998755443322 12344443311 1234488899888865
Q ss_pred -CceEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC
Q 014603 183 -NTVALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 183 -~~~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~ 259 (422)
+...+++++| ++++|..+ +.+++++|.++|++||+++|+||+|+++.+.+... .....+..++ +.|+||.++.
T Consensus 189 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~~~~~~~~~d---~~t~sK~l~~ 264 (413)
T cd00610 189 PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-AFEHFGVEPD---IVTLGKGLGG 264 (413)
T ss_pred CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-hHhhcCCCCC---eEEEcccccC
Confidence 3455666666 56779865 67779999999999999999999999765544321 1122222222 4478899865
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHH--Hhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSI--KSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
|+|+||++++ +++++.+ .... ..+.+.+++.+.++.++|+...+ .+..++++++.+++++.|+++
T Consensus 265 -g~~~g~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~ 332 (413)
T cd00610 265 -GLPLGAVLGR--------EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLREL 332 (413)
T ss_pred -ccccEEEEEc--------HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence 7999999985 4677775 2222 23446677888888888865322 345666777777777777654
Q ss_pred CCC-CC-CCCCCCceEEEEecCcccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 337 PCI-TC-PKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 337 ~~~-~~-~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
... .. ...+..|.++++.++.... ........+...+ .++||.+.|+. .+.+|++++ +++++++++++
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~ 407 (413)
T cd00610 333 AEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAA-LERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLD 407 (413)
T ss_pred HhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHH-HHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHH
Confidence 210 10 1123446788887754200 0001234555555 56699999975 578999987 68999999999
Q ss_pred HHHHHH
Q 014603 410 RMKAFY 415 (422)
Q Consensus 410 ~l~~~~ 415 (422)
+|++++
T Consensus 408 ~l~~~l 413 (413)
T cd00610 408 ALDEAL 413 (413)
T ss_pred HHHHhC
Confidence 998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=221.28 Aligned_cols=316 Identities=17% Similarity=0.146 Sum_probs=223.4
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC--CEEEecCHHHHHHHHHHHhcCCCCEEEe
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD--DVYLTLGCTQAIEVILTVLARPGANILL 139 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~~~g~~~a~~~~~~~l~~~gd~Vl~ 139 (422)
.+++.+++++...... ....|. ....++|+.++++++ ++++ .|++++|+++++..++.+++.++|+|++
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~la~~~~------~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~ 79 (355)
T TIGR03301 9 STSATVRDAMLVDWCH-WDSEFN--DVTDQVRDRLLALAG------GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLV 79 (355)
T ss_pred CCCHHHHHHhhhhccC-CCHHHH--HHHHHHHHHHHHHhc------CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEE
Confidence 5678899988874322 111233 336678888888873 3443 6788999999999999999888888777
Q ss_pred cCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC--CceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 140 PRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--NTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 140 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
..+.+++ +...++..|.+++.++.++ ++.+|++.+++.+++ +.+.+++++++||+|... ++++|.++|+++
T Consensus 80 ~~~~~~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~---~~~~i~~l~~~~ 154 (355)
T TIGR03301 80 LINGAYGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAADPDITHVATVHHETTTGILN---PLEAIAKVARSH 154 (355)
T ss_pred ECCCchhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchh---HHHHHHHHHHHc
Confidence 6665544 4566778899998888643 456899999998864 455677888999999985 478999999999
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhh------
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSF------ 288 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------ 288 (422)
|+++|+|++++.. ....++..++. .++++|++|++ +++| +||++++ +++++.+...
T Consensus 155 ~~~livD~~~s~g----~~~~~~~~~~~---d~~~~s~~K~l~~~~G--~g~~~~~--------~~~~~~~~~~~~~~~~ 217 (355)
T TIGR03301 155 GAVLIVDAMSSFG----AIPIDIEELDV---DALIASANKCLEGVPG--FGFVIAR--------RDLLEASAGNARSLYL 217 (355)
T ss_pred CCEEEEEeccccC----CcccchhhcCc---cEEEecCCcccccCCc--eeEEEEC--------HHHHHHhhCCCCCcee
Confidence 9999999987652 22223333333 38889999985 4456 7999986 3555554410
Q ss_pred ------------hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCceEEEE
Q 014603 289 ------------LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKKP--EGSMFVMV 353 (422)
Q Consensus 289 ------------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~ 353 (422)
....++++...+.++.++++...+. ++++..++++++++.+.+.|+++ ++.+...+ .++.++++
T Consensus 218 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~ 296 (355)
T TIGR03301 218 DLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSF 296 (355)
T ss_pred eHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEE
Confidence 0112356777777777777754333 37888889999999999999887 66533222 23456777
Q ss_pred ecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
.++... . .+..++...+ .++||.+.+|..+.. +++||++. +++++++++++.|+++
T Consensus 297 ~~~~~~--~-~~~~~~~~~l-~~~gi~i~~~~~~~~-~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 297 LYPDDP--D-FDFDDFYQEL-KERGFVIYPGKLTLA-DTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ECCCCC--c-chHHHHHHHH-HHCCEEEECCccccc-cEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 776410 0 1334555555 667999999875543 79999985 6899999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=219.91 Aligned_cols=338 Identities=15% Similarity=0.105 Sum_probs=227.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC-------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF-------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~-------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
..++||++ |.... -|+++++++++.+....... ..+.....+.++|+.+|++++ . ++++++
T Consensus 17 ~~~~~~~~---~~~~~-~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g------~--~~~~~~ 84 (387)
T PRK09331 17 EEEFINLD---PIQRG-GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG------M--DEARVT 84 (387)
T ss_pred cccccccC---hhhcC-CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC------C--CcEEEe
Confidence 34567764 33222 36788999999988743211 011122357899999999983 2 468899
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-------CceEEEE
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-------NTVALVI 189 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~i 189 (422)
+|+++++..++.+++++||+|+++.++|.+....++..|++++.++...+.++.+|++.+++.+++ +++++++
T Consensus 85 ~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l 164 (387)
T PRK09331 85 HGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALL 164 (387)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEE
Confidence 999999999999999999999999999988877788899999999874234567899999988753 6889999
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
++|+|++|.. .++++|.++|+++|+++|+|++|+. |..+.+...++.+ +++.|++|+++ .+.++|++++
T Consensus 165 ~~~~~~tG~~---~~l~~I~~la~~~g~~livD~a~~~----g~~~~~~~~~g~D---~~~~s~~K~l~-~~~~~G~l~~ 233 (387)
T PRK09331 165 THVDGNYGNL---ADAKKVAKVAHEYGIPFLLNGAYTV----GRMPVDGKKLGAD---FIVGSGHKSMA-ASAPSGVLAT 233 (387)
T ss_pred ECCCCCCccc---ccHHHHHHHHHHcCCEEEEECCccc----CCcCCCHHHcCCC---EEEeeCccccc-CCCCEEEEEE
Confidence 9999999988 5688999999999999999999985 3222233333333 88999999975 4458999988
Q ss_pred eCCCCcccchhHHHHHHhhhh---------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014603 270 SDPNGILQDSGIVDSIKSFLN---------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 340 (422)
+ +++++.+..... ...+.......++..+++... ... +..++..++.+++++.|+++++++
T Consensus 234 ~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~-~~~-~~~~~~~~~~~~l~~~L~~l~g~~ 303 (387)
T PRK09331 234 T--------EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVV-ERV-KRWDEEVKKARWFVDELEKIEGFK 303 (387)
T ss_pred C--------HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHhcCCCEE
Confidence 6 355665543211 111122222333333343211 122 234555677778999999998887
Q ss_pred CCCC-CCCceEEEEecCccc---ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHH
Q 014603 341 CPKK-PEGSMFVMVKLNYSL---LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 341 ~~~~-~~~g~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~ 415 (422)
+... +....+..+..+... ........++...| +++||...+. +....+|+... .++++++++++.|++++
T Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gI~~~~~---~~~~i~ri~~~g~t~~di~~l~~aL~~i~ 379 (387)
T PRK09331 304 QLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEEL-KKRGIHGIKP---GATKEFKLSTYGLTWEQVEYVADAFKEIA 379 (387)
T ss_pred EeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHH-HHcCceEEcc---CCceEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 3311 233445445544110 00011234466665 5679984432 12456777763 78999999999999988
Q ss_pred HHh
Q 014603 416 DRH 418 (422)
Q Consensus 416 ~~~ 418 (422)
+++
T Consensus 380 ~~~ 382 (387)
T PRK09331 380 EKY 382 (387)
T ss_pred Hhc
Confidence 764
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=223.55 Aligned_cols=330 Identities=20% Similarity=0.227 Sum_probs=223.0
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC-----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS-----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
+..+++|+.|.|. ++.|+.+.+++.+. . ....|.+ ..|.+++++.+++++.+.+|. +.++++++++
T Consensus 19 ~~~~~~l~~g~~~----~~~p~~~~~~~~~~--~-~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~ 89 (398)
T cd00613 19 DQSMSFLGSGTYK----HNPPAVIKRNILEN--E-FYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDE 89 (398)
T ss_pred ccCcccccccccC----CcCcHHHHHHhccc--c-CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCc
Confidence 4456999999966 56666666655554 2 2234555 678899999999999887763 4446777765
Q ss_pred HH-HHHHHHHHHhcCC--CCEEEecCCCccchHHHHhhCC----CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeC
Q 014603 119 CT-QAIEVILTVLARP--GANILLPRPGFPYYEARATHSH----LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191 (422)
Q Consensus 119 ~~-~a~~~~~~~l~~~--gd~Vl~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~ 191 (422)
++ ++...+..++..+ ||+|+++++.|+.+...+...+ .+++.++..+ ++.+|++.+++.+.++++++++++
T Consensus 90 g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~ 167 (398)
T cd00613 90 ATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQY 167 (398)
T ss_pred hHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEEC
Confidence 55 4545555555665 9999999999998877777666 8888887643 346899999999988899999998
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC----CceeEEE
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP----GWRLGWL 267 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~----G~r~G~~ 267 (422)
|+ |+|.+. +.+++|.++|+++|+++|+|+++.... ........+. .+++.|++|++ +| |+++|++
T Consensus 168 ~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~----~~~~~~~~~~---d~~~~s~~K~~-~p~g~Ggp~~g~l 236 (398)
T cd00613 168 PN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLT----GLKPPGEYGA---DIVVGNLQKTG-VPHGGGGPGAGFF 236 (398)
T ss_pred CC-CCceec--chHHHHHHHHHhcCCEEEEEecccccc----CCCChHHcCC---CEEEeeccccC-CCCCCCCCceeEE
Confidence 85 899883 457999999999999999999876422 1111222333 38999999997 55 7889999
Q ss_pred EeeCCCCcccchhHHHHHHhh------------------------------hhhccCcchHHHHHHHHHHhhchHHHHHH
Q 014603 268 VTSDPNGILQDSGIVDSIKSF------------------------------LNISSDPATFIQGAVPQILEKTEEEFFSK 317 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 317 (422)
+.++ ++.+.+... .....+.+.....++...+....+.++++
T Consensus 237 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~ 308 (398)
T cd00613 237 AVKK--------ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKE 308 (398)
T ss_pred EEhh--------hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHH
Confidence 9863 344432110 00011222333333333444334567888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE--EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEE
Q 014603 318 ITDILRETADICCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI 395 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi 395 (422)
..++++++++++++.|+++++.. .+.+..+ +++.++... + .+..++...| .++||.+.... ....+.+|+
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~~~~---~~~~~~~~~v~~~~~~~~--~-~~~~~~~~~L-~~~gi~~~~~~-~~~~~~lRi 380 (398)
T cd00613 309 IAERAHLNANYLAKRLKEVGGVL---PFNGPFFHEFVLRLPPLY--G-IRAEDLAKAL-IDGGFHAPTMY-LPVDGTLMI 380 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc---cCCCCeeEEEEEEcCCcc--h-HHHHHHHHhh-hhcCccccccc-cCCCCeEEE
Confidence 89999999999999999885443 2222222 455554210 0 1355666666 45688765422 123578999
Q ss_pred Eec--cChHHHHHHHHHH
Q 014603 396 TFA--VEPSALEDGLGRM 411 (422)
Q Consensus 396 s~~--~~~~~l~~~~~~l 411 (422)
+++ ++++||+++++.|
T Consensus 381 s~~~~~t~edid~~~~~L 398 (398)
T cd00613 381 EPTETETKEELDALLEAL 398 (398)
T ss_pred EcCCCCCHHHHHHHHHhC
Confidence 998 7899999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-27 Score=222.30 Aligned_cols=336 Identities=15% Similarity=0.158 Sum_probs=226.3
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhh--CCCCCCCC--------CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVR--SARFNCYS--------STVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~--~~~~~~y~--------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
.|.|+++.++ ++++.+.+++.+++. ....+... ....+.++|+.+++++ +.++++++++
T Consensus 4 ~iyld~a~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~------g~~~~~v~~~ 72 (404)
T PRK14012 4 PIYLDYSATT-----PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI------GADPREIVFT 72 (404)
T ss_pred eEEecCcCCC-----CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc------CcCcCeEEEe
Confidence 3788888755 677899999988875 21111110 0123567788888888 4577889999
Q ss_pred cCHHHHHHHHHHHhc----CCCCEEEecCCCccchHHHH---hhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEE
Q 014603 117 LGCTQAIEVILTVLA----RPGANILLPRPGFPYYEARA---THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVI 189 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i 189 (422)
+|+|++++.++.++. ++||+|+++.++|++....+ +..|++++.++.++ ++.+|++.|++.++++++++++
T Consensus 73 ~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~ 150 (404)
T PRK14012 73 SGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRDDTILVSI 150 (404)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEE
Confidence 999999999887763 78999999999997764433 34588888888753 4568999999999989999999
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
++++||||.++ ++++|.++|+++|+++|+|++++. |..+.++...+.| +++.|++|.++ |+ ++|++++
T Consensus 151 ~~~~n~tG~~~---~~~~I~~la~~~g~~vivD~a~~~----g~~~~~~~~~~~D---~~~~s~~K~~g-p~-g~G~l~~ 218 (404)
T PRK14012 151 MHVNNEIGVIQ---DIAAIGEICRERGIIFHVDAAQSV----GKVPIDLSKLKVD---LMSFSAHKIYG-PK-GIGALYV 218 (404)
T ss_pred ECcCCCccchh---hHHHHHHHHHHcCCEEEEEcchhc----CCcccCcccCCCC---EEEEehhhccC-CC-ceEEEEE
Confidence 99999999995 578889999999999999999975 3333334444443 77789999754 33 4899888
Q ss_pred eCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-C-C-
Q 014603 270 SDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK-P-E- 346 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~-~- 346 (422)
++.......+.....-.......++++.....+..++++.. ........++.+++++++.+.|++++++.+... + .
T Consensus 219 ~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~ 297 (404)
T PRK14012 219 RRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRV 297 (404)
T ss_pred ecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccC
Confidence 64321100000000000000112344444555555565542 234566778888999999999988877653211 1 1
Q ss_pred -CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHH
Q 014603 347 -GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSAL 404 (422)
Q Consensus 347 -~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l 404 (422)
....+++.+. +..++...+ +++.|.+|..|.. .+.+|++++ ++++|+
T Consensus 298 ~~~~~~~~~~~--------~~~~~~~~l---~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dv 366 (404)
T PRK14012 298 PGNLNVSFNYV--------EGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEI 366 (404)
T ss_pred CCEEEEEEeCc--------CHHHHHHhC---CCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHH
Confidence 1223444432 233444433 3677777755532 368999998 789999
Q ss_pred HHHHHHHHHHHHHhc
Q 014603 405 EDGLGRMKAFYDRHA 419 (422)
Q Consensus 405 ~~~~~~l~~~~~~~~ 419 (422)
+++++.|++++++++
T Consensus 367 d~~~~~l~~~~~~~~ 381 (404)
T PRK14012 367 DYAIELVRKSIGKLR 381 (404)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887753
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=218.75 Aligned_cols=320 Identities=21% Similarity=0.265 Sum_probs=236.3
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC----CCC----CCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecC
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC----YSS----TVGILPARRAIADYLNRDLPYKLSP-DDVYLTLG 118 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~----y~~----~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g 118 (422)
|.|+++.++ +.|+.+.+++.+.+.....+. +.. ...+.+.|+.+++++ +.++ ++|++++|
T Consensus 1 iYld~~~~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~l------g~~~~~~v~~~~~ 69 (371)
T PF00266_consen 1 IYLDNAGTG-----PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLL------GAPPDEEVVFTSN 69 (371)
T ss_dssp EEEBTSSS------B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHH------TSSTTEEEEEESS
T ss_pred CEeeCCCcc-----CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhc------CCccccccccccc
Confidence 456666655 678899999999876432211 111 123457888899999 4566 79999999
Q ss_pred HHHHHHHHHHHh---cCCCCEEEecCCCccchH----HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeC
Q 014603 119 CTQAIEVILTVL---ARPGANILLPRPGFPYYE----ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191 (422)
Q Consensus 119 ~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~ 191 (422)
+|.+++.++.++ .++|++|++.+..|++.. ...+..|.+++.++.+.. ..+|++.+++.++++++++++++
T Consensus 70 ~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~--~~~~~~~~~~~l~~~~~lv~~~~ 147 (371)
T PF00266_consen 70 GTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG--GSLDLEDLEEALNPDTRLVSISH 147 (371)
T ss_dssp HHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT--SSCSHHHHHHHHHTTESEEEEES
T ss_pred cchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccccc--chhhhhhhhhhhccccceEEeec
Confidence 999999999999 789999999999997654 445577999998887643 35899999999999999999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
.+|.+|...| +++|.++|+++|+++++|.+++. |....++..++.| ++++|.+|.+|.+| +|+++++
T Consensus 148 ~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~----g~~~id~~~~~~D---~~~~s~~Kl~gp~G--~g~l~v~- 214 (371)
T PF00266_consen 148 VENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSA----GCVPIDLDELGAD---FLVFSSHKLGGPPG--LGFLYVR- 214 (371)
T ss_dssp BETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTT----TTSS--TTTTTES---EEEEESTSTTSSST--EEEEEEE-
T ss_pred ccccccEEee---eceehhhhhccCCceeEechhcc----ccccccccccccc---eeeecccccCCCCc--hhhheeh-
Confidence 9999999964 77888899999999999999987 4444556666554 89999999555566 7999887
Q ss_pred CCCcccchhHHHHHHhhhh----------------------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 272 PNGILQDSGIVDSIKSFLN----------------------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
++..++++.... ..++++.....++..+++...+..+++..++..++.+++
T Consensus 215 -------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~ 287 (371)
T PF00266_consen 215 -------PEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYL 287 (371)
T ss_dssp -------HHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHH
Confidence 455666632110 123677777888888888766778899999999999999
Q ss_pred HHHhhcCCCCCCCC---CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC--------CCCeEEEEec
Q 014603 330 CDRLKEIPCITCPK---KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--------LKDWLRITFA 398 (422)
Q Consensus 330 ~~~L~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--------~~~~iRis~~ 398 (422)
.+.|++++++.+.. .+..+..+.+.++.. +..++...|. +.||.+..|..+. ..+.+|+|++
T Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~L~-~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~ 360 (371)
T PF00266_consen 288 REALEELPGIEVLGPDDEPRRPSIVSFNLPGS------DADDVVKYLE-ERGIAVSTGSACAGPSLDILGMGGVIRVSLH 360 (371)
T ss_dssp HHHHHHTTTEEESSSSCGGBGTTEEEEEETTS------SHHHHHHHHH-HHTEEEEESTTTCHHHHHHHHTTTEEEEE-G
T ss_pred HhhhhcCCceeEeeecccccccceEEEeecCC------CHHHHHHHHh-hcCEEEeccCcccHHHHHHhCCCCEEEEecc
Confidence 99999998876432 122234455555432 5666666664 4599999988776 3589999998
Q ss_pred --cChHHHHHH
Q 014603 399 --VEPSALEDG 407 (422)
Q Consensus 399 --~~~~~l~~~ 407 (422)
++++||+++
T Consensus 361 ~~nt~~dv~~l 371 (371)
T PF00266_consen 361 YYNTEEDVDRL 371 (371)
T ss_dssp TTSSHHHHHHH
T ss_pred CCCCHHHHhhC
Confidence 789999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=218.83 Aligned_cols=319 Identities=19% Similarity=0.167 Sum_probs=223.7
Q ss_pred CCcHHHHHHHHHHhhCCCC--CCCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC----CC
Q 014603 62 RTASVAVDAIVHSVRSARF--NCYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR----PG 134 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~--~~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~g 134 (422)
+++|.+.+++.+++..... ..|+. .....++++.+++++ +.+...+++++|+++++..++.++.. ++
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~ 104 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELL------HLPDAYGYITSGGTEANIQAVRAARNLAKAEK 104 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHh------CCCCCCeEEecCcHHHHHHHHHHHHhhccCCC
Confidence 4568888999888765311 11211 111235566666666 34556788999999999998877643 57
Q ss_pred CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 135 ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 135 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
++|++.+++|..+...++..|.+++.++.+ .++.+|++.|++.++++++.+++++++|+||.+. ++++|.++|++
T Consensus 105 ~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~---~l~~I~~l~~~ 179 (371)
T PRK13520 105 PNIVVPESAHFSFDKAADMLGVELRRAPLD--DDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVD---PIPELSKIALE 179 (371)
T ss_pred ceEEecCcchHHHHHHHHHcCceEEEecCC--CCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccC---CHHHHHHHHHH
Confidence 899999999999998888899999888864 3456899999999988888888888999999995 48888888999
Q ss_pred cCcEEEEcccccccccC--CCC-CCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-
Q 014603 215 LGIMVIADEVYDHLAFG--NTP-FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN- 290 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~--~~~-~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (422)
+|+++++|++|+.+... ... ...+...+. ..+..|.+|+ +.+|.++|+++..+ +++.+.+.....
T Consensus 180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~~v---d~~~~s~~K~-~~a~~~~G~~~~~~-------~~~~~~l~~~~~~ 248 (371)
T PRK13520 180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGV---DSITIDPHKM-GLAPIPAGGILFRD-------ESYLDALAVDTPY 248 (371)
T ss_pred cCCCEEEEecchhHHHHhhcCCCCccccCCCC---ceEEECCccc-cCccCCceEEEEcC-------HHHHHhhcccCcc
Confidence 99999999999864321 110 011111121 2555688896 67778899888753 345555432111
Q ss_pred --------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 291 --------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 291 --------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
..++.+.....++..+|+...+..+++..++..++++.+.+.|+++ ++.+...|. ..++.+.++
T Consensus 249 ~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~v~~~~~------ 320 (371)
T PRK13520 249 LTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPV-LNIVAFDDP------ 320 (371)
T ss_pred ccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCC-ceEEEEecC------
Confidence 1123344556667777765445667888899999999999999987 765232444 345555554
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
+..++...| .++||.+.++. ..+++|+|++ +++++++++++.|+++++
T Consensus 321 --~~~~v~~~L-~~~gi~v~~~~---~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 321 --NPDEVREKL-RERGWRVSVTR---CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred --CHHHHHHHH-HHCCceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 355666666 45599987753 2568999987 789999999999998764
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=222.89 Aligned_cols=345 Identities=16% Similarity=0.180 Sum_probs=231.0
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.+|..++||..|....+.++. +|++.+|+.+++.+... ..|.. ....++.+.++++. ..+.+++++||
T Consensus 36 ~dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~--------~~~~v~~~~sG 105 (406)
T PRK12381 36 QQGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGNGYTN-EPVLRLAKKLIDAT--------FADRVFFCNSG 105 (406)
T ss_pred CCCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccCccCC-HHHHHHHHHHHhhC--------CCCeEEEcCCc
Confidence 368889999888655445544 89999999999875211 11211 11234555555443 24699999999
Q ss_pred HHHHHHHHHHhc--------CCCCEEEecCCCccchHHHHhhCCCeEEE----eeccCC--CCcccCHHHHHHhhcCCce
Q 014603 120 TQAIEVILTVLA--------RPGANILLPRPGFPYYEARATHSHLEVRH----FDLLPA--KGWEVDLDAVEALADENTV 185 (422)
Q Consensus 120 ~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~----~~~~~~--~~~~~d~~~l~~~~~~~~~ 185 (422)
++|++.+++... ....+|+..+.+||+....+...+..... .++.+. .....|++.+++.+++++.
T Consensus 106 seA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~a 185 (406)
T PRK12381 106 AEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTC 185 (406)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCee
Confidence 999999998752 13478999999999886544433321110 011000 0011378899988876655
Q ss_pred EEEEeCCCCCccccc--CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 186 ALVIINPGNPCGNVY--TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 186 ~i~i~~p~nptG~~~--~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
+++ .+|.+++|-++ +.+.+++|.++|++||+++|+||+|.++.++|... .....+..++ +.+++|.++ +|+|
T Consensus 186 avi-iEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~~~~~v~pD---i~t~sK~l~-gG~~ 259 (406)
T PRK12381 186 AVI-VEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPD---VLTTAKALG-GGFP 259 (406)
T ss_pred EEE-EeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hhHhhCCCCC---EEEehhhhh-CCCc
Confidence 554 57988888643 68999999999999999999999998887777532 2222222222 358899975 7999
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCC
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP-CITC 341 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~ 341 (422)
+||++++ +++++.+.... ..+.+.+++.++++.++|+... -.+..++++++.+++.+.|+++. ....
T Consensus 260 ig~~~~~--------~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~ 328 (406)
T PRK12381 260 IGAMLTT--------EKCASVMTVGTHGTTYGGNPLASAVAGKVLELIN---TPEMLNGVKQRHDWFVERLNTINARYGL 328 (406)
T ss_pred eEEEEEc--------HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999986 46777775533 3345778899999988887532 23466778888888888887651 1211
Q ss_pred C-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 342 P-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 342 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+ .....|.++++.++.... .....+. ..+.++||.+.+.. .+++|++++ ++++++++++++|+++++++
T Consensus 329 ~~~vrg~Gl~~~~~l~~~~~---~~~~~~~-~~l~~~Gv~v~~~g----~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 400 (406)
T PRK12381 329 FSEIRGLGLLIGCVLNAEYA---GKAKQIS-QEAAKAGVMVLIAG----PNVVRFAPALNISEEEITTGLDRFARACERF 400 (406)
T ss_pred EEEEecCeEEEEEEecCchh---hHHHHHH-HHHHHCCcEEeeCC----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 1 123447788887754200 0123444 44567799997642 468999987 78999999999999999887
Q ss_pred ccc
Q 014603 419 AKK 421 (422)
Q Consensus 419 ~~~ 421 (422)
.++
T Consensus 401 ~~~ 403 (406)
T PRK12381 401 VSR 403 (406)
T ss_pred Hhc
Confidence 543
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=219.66 Aligned_cols=322 Identities=15% Similarity=0.124 Sum_probs=223.3
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------C--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------S--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
|+|+++.++ ++++.+.+++.+.+.....+... . ..-+.++|+.+++++ +.++++|++++|+
T Consensus 1 iYld~a~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~t~~~ 69 (364)
T PLN02651 1 LYLDMQATT-----PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI------GADPKEIIFTSGA 69 (364)
T ss_pred CcccCcCCC-----CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCH
Confidence 356666655 67789999998887542211110 1 122557778888887 4567899999999
Q ss_pred HHHHHHHHHHh----cCCCCEEEecCCCccchHHH---HhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 120 TQAIEVILTVL----ARPGANILLPRPGFPYYEAR---ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 120 ~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
|++++.++.++ .++||+|++...+|+++... +...|.+++.++.++ ++.+|++.+++.+++++++++++++
T Consensus 70 t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~v~~~ 147 (364)
T PLN02651 70 TESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRPDTALVSVMAV 147 (364)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEECC
Confidence 99988887654 46899999999888765332 335688888888753 4568999999999989999999999
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
+|+||.+. ++++|.++|+++|+++++|.+++. |..+.++..++.| +++.|.+|+++.+| +|+++++++
T Consensus 148 ~n~tG~~~---~l~~I~~~~~~~g~~~~vD~a~~~----g~~~~~~~~~~~D---~~~~s~hK~~gp~G--~g~l~v~~~ 215 (364)
T PLN02651 148 NNEIGVIQ---PVEEIGELCREKKVLFHTDAAQAV----GKIPVDVDDLGVD---LMSISGHKIYGPKG--VGALYVRRR 215 (364)
T ss_pred CCCceecc---cHHHHHHHHHHcCCEEEEEcchhh----CCcccCcccCCCC---EEEechhhhCCCCc--eEEEEEcCC
Confidence 99999995 577888999999999999999986 4334455555554 88899999744445 888888753
Q ss_pred CCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCC---CC-
Q 014603 273 NGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKP---EG- 347 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~---~~- 347 (422)
....-.+.+...-.......++++.....++.++|+...+ ..+...++.+++++++.+.|++ +|++.+. .| ..
T Consensus 216 ~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~-~~~~~~~~ 293 (364)
T PLN02651 216 PRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVN-GPRDPEKR 293 (364)
T ss_pred CCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEE-CCCCcccC
Confidence 2111001110000001123457888888888888876443 3477888999999999999985 6777744 33 11
Q ss_pred -ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHH
Q 014603 348 -SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALE 405 (422)
Q Consensus 348 -g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~ 405 (422)
...+.+.++.. +..++...| .+ |.+..|..|.. .+.+|+|++ ++++||+
T Consensus 294 ~~~i~~~~~~~~------~~~~~~~~L-~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 294 YPGTLNLSFAYV------EGESLLMGL-KE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCCEEEEEeCCC------CHHHHHHHh-CC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 22444445421 566676666 43 99998887633 268999998 7888874
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=218.02 Aligned_cols=317 Identities=15% Similarity=0.128 Sum_probs=224.4
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC--CCEEEecCHHHHHHHHHHHhcCCCCEEEe
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP--DDVYLTLGCTQAIEVILTVLARPGANILL 139 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~ 139 (422)
..++.|.+++...... ....+ ..-+.++|+.++++++ .++ +.|++|+|+|++++.++.++..+||.+++
T Consensus 13 ~~~~~v~~~~~~~~~~-~~~~~--~~~~~~~r~~la~l~~------~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv 83 (363)
T TIGR02326 13 TTSRTVKEAMLFDWCT-WDSDY--NIVVEQIRQQLLALAT------AEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLV 83 (363)
T ss_pred CCCHHHHHHhCCCCCC-CChHH--HHHHHHHHHHHHHHhC------CCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEE
Confidence 4567888777665521 11011 1235677888888873 444 47999999999999999999888888777
Q ss_pred cCCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC--CceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 140 PRPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--NTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 140 ~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
..+.+++. ...++..|.+++.++.++ ++.+|++.+++.+++ +++++.+++++||||..+| +++|.++|+++
T Consensus 84 ~~~~~~~~~~~~~a~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~ 158 (363)
T TIGR02326 84 VINGAYGARIVQIAEYLGIPHHVVDTGE--VEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRH 158 (363)
T ss_pred EeCChhhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHc
Confidence 66666544 466778899999888643 456899999998864 4567788899999999965 68899999999
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhh------
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSF------ 288 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------ 288 (422)
|+++|+|++++. |..+.++..++.+ ++++|++|++ +.+| +|++++++ +.++++...
T Consensus 159 g~~livD~~~~~----g~~~~~~~~~~~D---~~~~s~~K~l~~p~G--~G~l~~~~--------~~~~~~~~~~~~~~~ 221 (363)
T TIGR02326 159 GKVTIVDAMSSF----GGIPIDIAELHID---YLISSANKCIQGVPG--FGFVIARQ--------AELAACKGNARSLSL 221 (363)
T ss_pred CCEEEEEccccc----cCcccchhhcCcc---EEEecCccccccCCc--ceEEEECH--------HHHHHhhcCCCceee
Confidence 999999998874 3333445555443 8889999986 3456 79999863 344433210
Q ss_pred -------------hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCceEEE
Q 014603 289 -------------LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKKP--EGSMFVM 352 (422)
Q Consensus 289 -------------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~ 352 (422)
....++++...+.++.++++...+. .++++.++++++++++++.|+++ ++.+...+ ..+...+
T Consensus 222 ~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 300 (363)
T TIGR02326 222 DLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITS 300 (363)
T ss_pred cHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEE
Confidence 0012356777888888888764333 47788899999999999999887 66533222 3344566
Q ss_pred EecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c-cChHHHHHHHHHHHHHH
Q 014603 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~-~~~~~l~~~~~~l~~~~ 415 (422)
+.++... ..+..++...+ +++||.+.+|..+. .+++||++ + ++.+++++++++|++++
T Consensus 301 ~~~~~~~---~~~~~~v~~~L-~~~gi~v~~g~~~~-~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 301 FYSPEDP---DYRFADFYQRL-KEQGFVIYPGKVSQ-VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred EECCCCC---CCCHHHHHHHH-HHCCEEEECCcCCC-CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 7665310 01345565655 56799999987653 57899996 4 68999999999998875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=218.35 Aligned_cols=229 Identities=15% Similarity=0.170 Sum_probs=175.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCC
Q 014603 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHL 156 (422)
Q Consensus 81 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~ 156 (422)
.+|+. .....|++++|++. ..+++++++||++|+..++.+++++||+|+++.|+|.++...+ ...|+
T Consensus 78 ~R~~~-Pt~~~Le~~lA~le--------g~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi 148 (427)
T PRK07049 78 SRFNH-PNSEIVEDRLAVYE--------GAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV 148 (427)
T ss_pred cCCCC-cCHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence 45554 34689999999988 2457889999999999999999999999999999999886653 45687
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhc-----CCceEEEEeCCCCCcccccCHHHHHHHHHHHHH---cCcEEEEccccccc
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALAD-----ENTVALVIINPGNPCGNVYTYQHLQKIAETAKK---LGIMVIADEVYDHL 228 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~---~~~~li~D~~~~~~ 228 (422)
+++.++. ..|.+.+++.+. ++++++++++|+||||.+++.+++.+|++.|+. +++++|+|++|...
T Consensus 149 ~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~ 222 (427)
T PRK07049 149 GAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGP 222 (427)
T ss_pred EEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccc
Confidence 7665541 146667766553 478999999999999999999999999988654 68999999998643
Q ss_pred ccCCCCCCCccccCCCCCeEEEecCccccC-CCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHH
Q 014603 229 AFGNTPFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQI 306 (422)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~ 306 (422)
.+ ..++ ..+ ..+++.|+||.++ .+|+|+||++++ +++.+.+...... ..+.+++.++++...
T Consensus 223 ~~----~~pl-~~g---~divv~S~SK~~gG~~glr~G~vv~~--------~~l~~~l~~~~~~~g~~ls~~~a~l~~r~ 286 (427)
T PRK07049 223 VF----QKPL-EHG---ADLSVYSLTKYVGGHSDLVAGAVLGR--------KALIRQVRALRSAIGTQLDPHSCWMLGRS 286 (427)
T ss_pred cc----CCcc-ccC---CCEEEEcCceeecCCCCcEEEEEECC--------HHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 21 1122 122 2488899999998 499999999975 4677777765543 346778888888777
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 307 LEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
|+. +..+.++..++++.+.+.|+++|++.-+.+|
T Consensus 287 L~t-----l~~R~~~~~~~a~~la~~L~~~p~V~~v~yp 320 (427)
T PRK07049 287 LET-----LVLRMERANRNARAVAEFLRDHPKVEKLHYL 320 (427)
T ss_pred CCh-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 764 5666677789999999999998876544444
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=217.43 Aligned_cols=324 Identities=16% Similarity=0.148 Sum_probs=226.5
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEec
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~ 140 (422)
.++++.++++|.+.+ ......|. ..+.++|+.++++++. .-+.+.+++++|++++++.++.++..+||.|++.
T Consensus 14 ~~~~~~~~~a~~~~~-~~~~~~~~--~~~~~~~~~l~~l~~~----~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~ 86 (368)
T PRK13479 14 LTTSRTVREAMLRDW-GSWDDDFN--ALTASVRAKLVAIATG----EEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVP 86 (368)
T ss_pred CCCCHHHHHHhCCCC-CCCChHHH--HHHHHHHHHHHHHhCC----CCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEE
Confidence 356788888887765 21111233 2467888888888832 1123568899999999999999999999999998
Q ss_pred CCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC--CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC
Q 014603 141 RPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216 (422)
Q Consensus 141 ~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 216 (422)
.+++++. ...++..|.+++.++... ++.+|++.+++.+++ +++++++++|+||||...| +++|.++|+++|
T Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~ 161 (368)
T PRK13479 87 DNGAYGARIAQIAEYLGIAHVVLDTGE--DEPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRHG 161 (368)
T ss_pred eCCchHHHHHHHHHHcCCcEEEEECCC--CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHcC
Confidence 8888665 377788899999998753 346899999998754 4567889999999999965 678888899999
Q ss_pred cEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhhh------
Q 014603 217 IMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL------ 289 (422)
Q Consensus 217 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~------ 289 (422)
+++|+|++++. |....++...+.+ +++.|++|++ +.+| +||++++ +++++.+....
T Consensus 162 ~~livDa~~~~----g~~~~~~~~~~~d---~~v~s~~K~l~g~~G--~G~l~~~--------~~~~~~~~~~~~~~~~~ 224 (368)
T PRK13479 162 KRLIVDAMSSF----GAIPIDIAELGID---ALISSANKCIEGVPG--FGFVIAR--------RSELEACKGNSRSLSLD 224 (368)
T ss_pred CEEEEEccccc----CCccccccccCce---EEEecCccccccCCC--ceEEEEC--------HHHHHHhhcCCCCeeec
Confidence 99999977654 2222344444433 7778999975 5577 6999986 34555543321
Q ss_pred ------------hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCceEEEEe
Q 014603 290 ------------NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKKP--EGSMFVMVK 354 (422)
Q Consensus 290 ------------~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~ 354 (422)
...++++...+.++.++++... +.++++..+++.++++.+++.|+++ ++.++..+ .......+.
T Consensus 225 ~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 303 (368)
T PRK13479 225 LYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFH 303 (368)
T ss_pred HHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEE
Confidence 1112566667777777776543 3457888899999999999999998 66633221 111122223
Q ss_pred cCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c-cChHHHHHHHHHHHHHHHHhc
Q 014603 355 LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A-VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~-~~~~~l~~~~~~l~~~~~~~~ 419 (422)
++.. ++ .+..++...+ .++||.+.+|..+ ..+++|++. + +++++++++++.|+++++++.
T Consensus 304 ~~~~--~~-~~~~~l~~~L-~~~gi~v~~g~~~-~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 304 APAD--PA-YDFKEFYERL-KEQGFVIYPGKLT-QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred CCCC--CC-cCHHHHHHHH-HHCCEEEecCCCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3321 00 1456666666 5569999988644 256899986 4 689999999999999987753
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=209.36 Aligned_cols=329 Identities=20% Similarity=0.199 Sum_probs=246.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+++.++||++++ |.++..+|.+++++.+.++.... .-++....+.+|++.+|+|+ ..+..++.
T Consensus 37 ~~~~~~nf~SNd---YLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--------g~e~al~f 105 (388)
T COG0156 37 DGRKVLNFCSND---YLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--------GAEAALLF 105 (388)
T ss_pred CCceeEeeeccC---cccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--------CCCcEEEE
Confidence 468899999999 77888899999999999876211 12334455789999999999 34577777
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC---C---ceEEEEe
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE---N---TVALVII 190 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~---~~~i~i~ 190 (422)
+++-.|+..++.++++++|.|+.....|.+....++..+.+.+.+.. .|++.||+.+.+ . .+.++..
T Consensus 106 ~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~Ivte 178 (388)
T COG0156 106 SSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTE 178 (388)
T ss_pred cccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEe
Confidence 88888999999999999999999999999999999999999988864 377888888755 1 3444444
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEecCccccCCCCceeEEEE
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
..-...|.+ .++.+|++++++|+.++++||+|+...++..+....+.++. .+..|+++||+|.||..| |++.
T Consensus 179 gVfSMdGdi---ApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~ 252 (388)
T COG0156 179 GVFSMDGDI---APLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIA 252 (388)
T ss_pred ccccCCCCc---CCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceee
Confidence 556778988 56888899999999999999999988776554444444433 334699999999999888 9998
Q ss_pred eeCCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++ ..+.+.+..... ++.+.++...+++.++|+.. ......+++++++...++..++.. ++. . .+
T Consensus 253 g~--------~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l--~~~~~~r~~L~~~~~~~~~~~~~~-~~~-~-~~ 319 (388)
T COG0156 253 GS--------AALIDYLRNRARPFIFSTALPPAVAAAALAALRIL--EEGPERRERLQELAAFFRSLLKAL-GLV-L-LP 319 (388)
T ss_pred Cc--------HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhc-CCc-c-CC
Confidence 86 467777766532 23355666666777777652 234567778888888888666665 444 2 35
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC---CeEEEEec--cChHHHHHHHHHHHHH
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK---DWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
....+..+.+.... .+.++...++++ ||.+.+..++..+ ..+|++++ +++++|+.+++.+.++
T Consensus 320 s~s~I~pv~~gd~~-----~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 320 SESPIIPVILGDEE-----RALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCCeeeeEeCCHH-----HHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 55556655554321 355666667666 9999998877663 67999998 8999999999988764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=206.61 Aligned_cols=340 Identities=19% Similarity=0.243 Sum_probs=234.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|+.+|||..|...... -+.+|.+.+++.+|.+.-. .+.| ..+.+..+++.|.+.. + ..+.++|++||+
T Consensus 40 ~G~~YlDf~~Giav~~l-GH~hP~iv~al~~Q~~kl~h~sn~~-----~~~~~~~la~~L~~~s--~-~~d~vff~NSGa 110 (404)
T COG4992 40 QGREYLDFAAGIAVNNL-GHCHPALVEALKEQAEKLWHVSNLF-----YNEPQAELAEKLVELS--P-FADRVFFCNSGA 110 (404)
T ss_pred CCCEeeeeccceeeecc-CCCCHHHHHHHHHHHHHhhhccccc-----CChHHHHHHHHHHhhC--c-cccEEEEcCCcH
Confidence 69999999998766433 3578999999999987632 2222 2345556666665422 2 378999999999
Q ss_pred HHHHHHHHHhcC----C-CCEEEecCCCccchHHHHhhCCCeEEEe----eccCCC---CcccCHHHHHHhhcCCceEEE
Q 014603 121 QAIEVILTVLAR----P-GANILLPRPGFPYYEARATHSHLEVRHF----DLLPAK---GWEVDLDAVEALADENTVALV 188 (422)
Q Consensus 121 ~a~~~~~~~l~~----~-gd~Vl~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~---~~~~d~~~l~~~~~~~~~~i~ 188 (422)
||+++++....+ + ..+|+.....||+-...+...+.+..+. |+.+.- .|+ |++.+++++++++.+++
T Consensus 111 EA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-Di~al~~ai~~~taAvi 189 (404)
T COG4992 111 EANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-DIEALEAAIDEDTAAVI 189 (404)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-CHHHHHHHhccCeEEEE
Confidence 999999876532 2 2489999999987544443333332111 221110 111 88999999999887777
Q ss_pred EeCCCCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 189 IINPGNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 189 i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
+...+-..|++ .+.+.++++.++|++||+++|.||+|.++.++|+.+ .....+..++++++ .|.+ +.|+++|.+
T Consensus 190 vEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f-A~e~~gV~PDI~tl---aK~L-gGG~PigA~ 264 (404)
T COG4992 190 VEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF-AYEHYGVEPDILTL---AKAL-GGGFPIGAM 264 (404)
T ss_pred EecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH-HHHHhCCCCCEEEe---eccc-cCCccceee
Confidence 66668888886 466679999999999999999999999999988643 33344444444444 6995 667999999
Q ss_pred EeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCC
Q 014603 268 VTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE----IPCITCP 342 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~ 342 (422)
++.+ .+.+.+.... ..+++.|+++++++.++|+...+ +...++.++.-++|.+.|++ .|-+.
T Consensus 265 la~~--------~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~L~~l~~~~~~v~-- 331 (404)
T COG4992 265 LATE--------EIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE---EGLLENVREKGEYLLQRLRELKRRYPLVK-- 331 (404)
T ss_pred EEch--------hhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHHhhcCCcee--
Confidence 9852 3444454443 34568899999999999987442 22333444555555555554 33222
Q ss_pred CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 343 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
....-|+++.+.+.... ...+++..+ .++|+++.+.. .+.+|+.+. ++++++++++++|++++.....
T Consensus 332 ~vRG~GLmiGiel~~~~-----~a~~~~~~~-~~~gvL~~~a~----~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 332 EVRGRGLMIGIELKEPY-----RARDIVRAL-REEGVLVLPAG----PNVIRFLPPLVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred eeecceeEEEEEecCcc-----cHHHHHHHH-HHCCeEEecCC----CCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 23344788888886421 256666665 66799998765 579999998 7999999999999999987654
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=221.40 Aligned_cols=344 Identities=13% Similarity=0.121 Sum_probs=227.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC-CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS-STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.++||..|......+ ..+|.+.+++.+++.+.. .|. +..+..++++++++++. ..+++++++||+
T Consensus 45 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~--~~~~~~~~~~~lae~l~~~~~-------~~~~v~~~~sGs 114 (423)
T TIGR00713 45 VDGNEYIDYVLSWGPLILG-HAHPRVVEAVKEALERGT--SYGAPTEAEILLAKEIISRVP-------SVEMVRFVNSGT 114 (423)
T ss_pred CCCCEEEEccccccccccC-CCCHHHHHHHHHHHHhCC--cCCCCCHHHHHHHHHHHHhCC-------cccEEEEeCCHH
Confidence 3699999999997664222 467999999999998743 333 45567899999998873 136899999999
Q ss_pred HHHHHHHHHhc--CCCCEEEecCCCccchHHHHhh-C--CCeEEEeeccCC-------CCc---ccCHHHHHHhhc---C
Q 014603 121 QAIEVILTVLA--RPGANILLPRPGFPYYEARATH-S--HLEVRHFDLLPA-------KGW---EVDLDAVEALAD---E 182 (422)
Q Consensus 121 ~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~-~--g~~~~~~~~~~~-------~~~---~~d~~~l~~~~~---~ 182 (422)
+|++.+++... ...++|++.+++|+++...+.. . +......+..+. ... ..|++.+++.+. +
T Consensus 115 eA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~ 194 (423)
T TIGR00713 115 EATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGE 194 (423)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCC
Confidence 99999888642 2448999999999997543332 1 111111111000 000 027888988875 3
Q ss_pred CceEEEEe-CCCCCcccccC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC
Q 014603 183 NTVALVII-NPGNPCGNVYT-YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP 260 (422)
Q Consensus 183 ~~~~i~i~-~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~ 260 (422)
++.++++. .++| +|.+++ .+.+++|.++|++||+++|+||+|.++.+ |... ....++..++ +.+|||.++ +
T Consensus 195 ~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~-g~~~-~~~~~~~~pD---i~t~sK~l~-~ 267 (423)
T TIGR00713 195 EIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV-ALGG-AQEYFGVEPD---LTTLGKIIG-G 267 (423)
T ss_pred cEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc-Ccch-hHHHhCCCcc---hhhhhhhhc-C
Confidence 55666654 5567 788776 68899999999999999999999988743 3221 1112222222 347899986 8
Q ss_pred CceeEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 261 GWRLGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 261 G~r~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
|+|+||++++ +++++.+... ...+.+.+++.++++.++|+... +..+++..+..+.+++.+.+.+++
T Consensus 268 G~pig~v~~~--------~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (423)
T TIGR00713 268 GLPVGAFGGR--------REIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLED 339 (423)
T ss_pred CCceeeeeEH--------HHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999996 4677777532 12344778999999999988643 235666667777777777777777
Q ss_pred CCCCCCCCCCCCceEEEEecCccccc-----CCCCH---HHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLE-----GINSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDG 407 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~---~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~ 407 (422)
+ ++....... |.++.+.+...... ...+. ..+...++ ++||.+.++. + +.+|+++..++++++++
T Consensus 340 ~-~~~~~v~~~-g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-~---~~~~l~~~~t~~~i~~~ 412 (423)
T TIGR00713 340 T-GIPHTVNRV-GSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML-DKGVFLPPSQ-F---EACFLSAAHTEEDIENT 412 (423)
T ss_pred c-CCCeEEEee-ccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH-HCCeEEecCC-c---cceeeECCCCHHHHHHH
Confidence 6 333111223 44444444321000 00011 23455554 5799987642 2 45899988899999999
Q ss_pred HHHHHHHHHH
Q 014603 408 LGRMKAFYDR 417 (422)
Q Consensus 408 ~~~l~~~~~~ 417 (422)
+++|.+++++
T Consensus 413 ~~~l~~~l~~ 422 (423)
T TIGR00713 413 IEAAEEVFAE 422 (423)
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=203.69 Aligned_cols=311 Identities=21% Similarity=0.282 Sum_probs=199.7
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH-HHHHH-HHh----cC--------CCCEEEecCCCc
Q 014603 80 FNCY-SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA-IEVIL-TVL----AR--------PGANILLPRPGF 144 (422)
Q Consensus 80 ~~~y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a-~~~~~-~~l----~~--------~gd~Vl~~~~~~ 144 (422)
...| +...|++|+|+..+++| ++++++|++..+++-. +.-++ +++ .. +.-+.|++.|+|
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~ll------gv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGY 134 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELL------GVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGY 134 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHH------TS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--
T ss_pred ccCCCCccCChHHHHHHHHHHh------CCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCc
Confidence 4589 78899999999999999 7899999987655433 33222 222 11 124789999999
Q ss_pred cchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc--CCceEEEEeCC--CCCcccccCHHHHHHHHHH-HHHcCcEE
Q 014603 145 PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD--ENTVALVIINP--GNPCGNVYTYQHLQKIAET-AKKLGIMV 219 (422)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~p--~nptG~~~~~~~l~~i~~~-~~~~~~~l 219 (422)
.....+.+.+|++.+.+|..++ ++|++.+++++. +..|.+ .|.| +||||.+++.+.+++++++ ....+..|
T Consensus 135 DRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~D~svKGi-WcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI 210 (425)
T PF12897_consen 135 DRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAEDPSVKGI-WCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRI 210 (425)
T ss_dssp HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHTSTTEEEE-EE-SSS-TTT-----HHHHHHHHHS--SSTT-EE
T ss_pred hHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhcCCccceE-EeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEE
Confidence 9999999999999999998653 589999999873 344444 5667 8999999999999999987 33569999
Q ss_pred EEcccccccccCCCCC-CC---c----cccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-h
Q 014603 220 IADEVYDHLAFGNTPF-VP---M----GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-N 290 (422)
Q Consensus 220 i~D~~~~~~~~~~~~~-~~---~----~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~ 290 (422)
+.|.+|....+.+... .. + ..-+..++++.+.|+||. ..||.+++++.++ ++-++.+++.. .
T Consensus 211 ~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKI-Tf~GaGva~~aaS--------~~Nl~~~~~~~~~ 281 (425)
T PF12897_consen 211 FWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKI-TFPGAGVAFFAAS--------EANLAWIKKHLSV 281 (425)
T ss_dssp EEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTT-S-TTSS-EEEEE---------HHHHHHHHHHHHH
T ss_pred EeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccc-ccCCcceeeeecC--------HHHHHHHHHHhcC
Confidence 9999999766633211 11 1 112445679999999999 7999999999987 34556665554 3
Q ss_pred hccCcchHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHHHHHhhc-CC---CCCCCCCCCCceEEEEecCcccccCC
Q 014603 291 ISSDPATFIQGAVPQILEKTE---EEFFSKITDILRETADICCDRLKE-IP---CITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 291 ~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~-~~---~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.+.++.-+.|..-..++.+.. ..+++++.+.++-+.+.+.+.|++ +. ++..|..|.+|+|+++....+
T Consensus 282 ~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G----- 356 (425)
T PF12897_consen 282 QTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG----- 356 (425)
T ss_dssp H-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-----
T ss_pred ceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC-----
Confidence 456889999999999998733 567788888888888877777765 32 344477999999999988764
Q ss_pred CCHHHHHHHHHHhcCeEEec-CCCCCC-----CCeEEEEec-cChHHHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLP-GITVGL-----KDWLRITFA-VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~-g~~~~~-----~~~iRis~~-~~~~~l~~~~~~l~~~~~ 416 (422)
.+.+ +.+++++.||.++| |..|.. ...|||+++ .+.+|++.+++.+..+++
T Consensus 357 -~Akr-vV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 357 -TAKR-VVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp --HHH-HHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 3444 45578899999999 555532 568999999 577999999999887653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-26 Score=214.48 Aligned_cols=337 Identities=14% Similarity=0.119 Sum_probs=217.2
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhC-------CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRS-------ARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+||++.+ |.++..+|+++++..+.+++ ... .|+...++.+|++++|++++. .+.+++++|.+
T Consensus 1 ~~f~s~d---yLgl~~~~~~~~~~~~a~~~~g~~~~~sr~-~yg~~~~~~~LE~~lA~~~g~-------e~al~~~sG~~ 69 (392)
T PLN03227 1 LNFATHD---FLSTSSSPTLRQTALESLSHYGCGSCGPRG-FYGTIDAHLELEQCMAEFLGT-------ESAILYSDGAS 69 (392)
T ss_pred CCCcCcC---ccCCCCCHHHHHHHHHHHHHhCCCCccccc-ccCChHHHHHHHHHHHHHhCC-------CcEEEecCcHH
Confidence 4676666 66778889999999998875 222 476666789999999999942 24555555555
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-----------CCceEEEE
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-----------ENTVALVI 189 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-----------~~~~~i~i 189 (422)
+. ..++.+++++||.|+++++.|.++...+...+.+++.++..+. -+++.+.+.+. ++++++++
T Consensus 70 a~-~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~ 144 (392)
T PLN03227 70 TT-SSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVV 144 (392)
T ss_pred HH-HHHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEE
Confidence 44 4777788999999999999999988877777777776654311 13333333332 35677787
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCCccccCC-CCCeEEEecCccccCCCCceeEE
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
..+.||+|.+++ ++++.++|++||+++|+||+|+.... .|........+.+ .+..+++.|+||.++..| |+
T Consensus 145 E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g---g~ 218 (392)
T PLN03227 145 EGLYKNTGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG---GM 218 (392)
T ss_pred cCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC---cE
Confidence 888999999976 77889999999999999999983222 2222111111111 122488889999875444 88
Q ss_pred EEeeCCCCcccchhHHHHHHhhh-hh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-
Q 014603 267 LVTSDPNGILQDSGIVDSIKSFL-NI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP- 342 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~- 342 (422)
++++ +++++.++... .. ....++..+.++..++....+ .+++.++++++.+++++.|++. ++..+
T Consensus 219 v~~~--------~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~-~~~~~~ 287 (392)
T PLN03227 219 TVGS--------EEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNS-SHPYAL 287 (392)
T ss_pred EecC--------HHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCcccc
Confidence 8765 45666554332 12 222345566666666643211 3456777888888888888752 21101
Q ss_pred --------CCCCCceEEEEecCcccccC-C---CCHHHHHHHHHHhcCeEEecCC-------CCCCCCeEEEEec--cCh
Q 014603 343 --------KKPEGSMFVMVKLNYSLLEG-I---NSDMEFALKLAKEESVIVLPGI-------TVGLKDWLRITFA--VEP 401 (422)
Q Consensus 343 --------~~~~~g~~~~~~~~~~~~~~-~---~~~~~~~~~l~~~~gi~v~~g~-------~~~~~~~iRis~~--~~~ 401 (422)
.....++++.+.+....... . ....++...+ .++|+.+.+.. .+.++..+|++++ +++
T Consensus 288 ~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~ 366 (392)
T PLN03227 288 KLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHS-LSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTR 366 (392)
T ss_pred ccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHH-HHCCCEEEecccccCCcCCCCCCceEEEEecCCCCH
Confidence 11223556666664311000 0 0012444444 56799986522 1223578999997 799
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014603 402 SALEDGLGRMKAFYDRH 418 (422)
Q Consensus 402 ~~l~~~~~~l~~~~~~~ 418 (422)
+|+++++++|++++++.
T Consensus 367 eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 367 EDIDKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=216.31 Aligned_cols=355 Identities=15% Similarity=0.162 Sum_probs=227.9
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|..++||..|..+...+ ..+|.+.+++.+++.+... .+.+....+ ....+++++....+.+. .+.++++++|++
T Consensus 38 ~dG~~~lD~~~g~~~~~lG-h~~~~i~~a~~~~~~~~~~-~~~~~~~~~-~~~~la~~l~~~~~~~~-~~~~~f~~sGse 113 (425)
T PRK08088 38 VEGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLKKLSH-TCFQVLAYE-PYLELCEKMNQKVPGDF-AKKTLLVTTGSE 113 (425)
T ss_pred CCCCEEEEcCCchhhcCCC-CCCHHHHHHHHHHHhhCCC-ccccccCCH-HHHHHHHHHHHhCCCCC-CCEEEEeCCcHH
Confidence 3688899999887664333 3588999999999976432 222212223 33467777765443222 247888888889
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCCeEE--------------EeeccC-CCCccc--CHHHHHHhhc-
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHSHLEVR--------------HFDLLP-AKGWEV--DLDAVEALAD- 181 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~-~~~~~~--d~~~l~~~~~- 181 (422)
|++.+++... .....|+..+++|++....+...+.... ..+... ..+... +++.+++.+.
T Consensus 114 a~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~ 193 (425)
T PRK08088 114 AVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKN 193 (425)
T ss_pred HHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHh
Confidence 8888776542 1235677779999998665554432211 111100 011001 1445777664
Q ss_pred ---CCceEEEEeCC--CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 182 ---ENTVALVIINP--GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 182 ---~~~~~i~i~~p--~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
.+..++++..| ++++...++.+.+++|.++|+++|+++|+||+|+++.+.|... .+...+ .+..+.||||.
T Consensus 194 ~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~-~~~~~~---~~pdi~s~sK~ 269 (425)
T PRK08088 194 DAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLF-AMEQMG---VAADLTTFAKS 269 (425)
T ss_pred ccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-HHhhcC---CCCCEEEEecc
Confidence 24455667777 5666678899999999999999999999999999876655321 221222 12447899999
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhh
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
++ +|+|+||++++ +++++.+.... ..+.+.+++.|+++.++|+... +..+++.++..+.+++.+.+.++
T Consensus 270 l~-~G~rig~v~~~--------~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 340 (425)
T PRK08088 270 IA-GGFPLAGVTGR--------AEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAE 340 (425)
T ss_pred cc-CCCcceeeEec--------HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 75 89999999996 46777775544 2345778899999999998753 34455555554455555554444
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
+.|.+..+ ... |.++|+.+..... +......++...+ .++||.+.|+..+ .+.+|++++ .++++|+++++
T Consensus 341 ~~~~~~~v-~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~-~~~Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~~~i~ 415 (425)
T PRK08088 341 KHPEIGDV-RGL-GAMIAIELFEDGDHSKPNAKLTAQIVARA-RDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLE 415 (425)
T ss_pred hCCCeEEE-ecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHH-HhCCCEEecCCCC--CCEEEEECCCCcCHHHHHHHHH
Confidence 55543312 222 8899999842110 0001234455544 5679998876544 488999998 57999999999
Q ss_pred HHHHHHHHh
Q 014603 410 RMKAFYDRH 418 (422)
Q Consensus 410 ~l~~~~~~~ 418 (422)
+|.+++++.
T Consensus 416 ~l~~~l~~~ 424 (425)
T PRK08088 416 IIAQCFDEA 424 (425)
T ss_pred HHHHHHHhh
Confidence 999998753
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=212.20 Aligned_cols=341 Identities=15% Similarity=0.137 Sum_probs=223.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|......+ ..+|++.+++.+++..... +.. ....+....+++.+.+.. ..+.++++++|++|
T Consensus 13 dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~--~~~-~~~~~~~~~la~~l~~~~----~~~~v~f~~sGseA 84 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALG-HGDPDWVKAVAEQAGTLAH--VSN-VYHTIPQVELAKRLVASS----FADRVFFCNSGTEA 84 (382)
T ss_pred CCCEEEECCcCHHhccCC-CCCHHHHHHHHHHHHhcCC--ccc-cccCHHHHHHHHHHHhcC----CCCeEEEeCCcHHH
Confidence 689999998886443222 4579999999999976321 111 112344455666664422 24689999999999
Q ss_pred HHHHHHHhc---CC------------CCEEEecCCCccchHHHHhhCCCeE-E---EeeccCCCC--cccCHHHHHHhhc
Q 014603 123 IEVILTVLA---RP------------GANILLPRPGFPYYEARATHSHLEV-R---HFDLLPAKG--WEVDLDAVEALAD 181 (422)
Q Consensus 123 ~~~~~~~l~---~~------------gd~Vl~~~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~--~~~d~~~l~~~~~ 181 (422)
++.+++... .. ..+|+....+||+....+....... . ..+..+... ...|++.+++.+.
T Consensus 85 ~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 164 (382)
T PLN00144 85 NEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQ 164 (382)
T ss_pred HHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcC
Confidence 999987542 10 2579999999998865554332211 0 011111000 0126888988876
Q ss_pred CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC-ccccCCCCCeEEEecCccccC
Q 014603 182 ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP-MGVFGSIVPVLTLGSISKRWI 258 (422)
Q Consensus 182 ~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~s~sK~~~ 258 (422)
++..+.+++.| +||.|.. ++.+.+++|.++|++||+++|+||+|.++.++|..... ...+.+| +.++||.+
T Consensus 165 ~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD-----i~t~sK~l- 238 (382)
T PLN00144 165 KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD-----IMTLAKPL- 238 (382)
T ss_pred CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC-----EEEecccc-
Confidence 55555666666 7885543 35566999999999999999999999998877753221 3334443 66789995
Q ss_pred CCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 259 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
.+|+|+|+++++ +++++.+.... ..+.+.+++.++++.+.|+...+ ...++..+.-+..++.+.+.+++.
T Consensus 239 ~~G~pig~v~~~--------~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~ 310 (382)
T PLN00144 239 AGGLPIGAVLVT--------EKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGN 310 (382)
T ss_pred cCCcceEEEEEc--------HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 688999999996 36777665432 33457788999999977765432 222222222233344455555556
Q ss_pred CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 337 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
|.+. . ....|+++|+.+.. ....+... +.++||.+.|+.. .+.+|++++ .+++++++++++|.++
T Consensus 311 ~~~~-~-vrg~G~~~~l~l~~-------~~~~~~~~-~~~~Gv~i~~~~~---~~~lrl~p~~~~~~~~i~~~~~~l~~~ 377 (382)
T PLN00144 311 PHVK-E-VRGVGLLVGIQLDV-------PAGPLVDA-CRDSGLLVLTAGK---GDVVRLVPPLVISEAELEQAVEILADC 377 (382)
T ss_pred CCce-e-eecCceEEEEEecC-------ccHHHHHH-HHHCCeEEeecCC---CCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence 5443 1 22368999999842 24455555 4667999998732 489999998 6789999999999999
Q ss_pred HHHh
Q 014603 415 YDRH 418 (422)
Q Consensus 415 ~~~~ 418 (422)
+.++
T Consensus 378 l~~~ 381 (382)
T PLN00144 378 LPAL 381 (382)
T ss_pred HHhc
Confidence 8764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=216.47 Aligned_cols=309 Identities=14% Similarity=0.117 Sum_probs=219.7
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC-----------
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR----------- 132 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----------- 132 (422)
+..+.+.+...++... ..|....+..++++.+++++.+.+|.+.+.+++++|+|+|+++..++.+++.
T Consensus 12 ~~~~~~~~~~~~n~~~-~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~ 90 (345)
T cd06450 12 PALLLEMLTSAKNAID-FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGG 90 (345)
T ss_pred HHHHHHHHHHhcCCCC-cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccc
Confidence 3455566666655433 4588878889999999999988877654556899999999999999988742
Q ss_pred -C--CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcccccCHH
Q 014603 133 -P--GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 133 -~--gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG~~~~~~ 203 (422)
+ ++.|+++.++|..+...+...|.+++.++.++. +.+|++.|++.+++ +++++++++|+||||.+ +
T Consensus 91 ~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~---~ 165 (345)
T cd06450 91 RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAI---D 165 (345)
T ss_pred cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCC---C
Confidence 2 347888999999988888888999999987643 36899999998876 67888899999999998 6
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCC-ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
++++|.++|+++|+++++|++|+.+......... ...+. .-.++..|++|++ .++.++|+++.
T Consensus 166 ~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~d~~~~s~~K~l-~~p~g~g~~~~------------- 229 (345)
T cd06450 166 PLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIE--RVDSISVDPHKYG-LVPLGCSAVLV------------- 229 (345)
T ss_pred CHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCcc--ccCEEEEchhHhh-CCCcchHHHHH-------------
Confidence 7899999999999999999999875532111111 01111 1125667999974 45566777653
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
. .+.+.++...+. ...+++..++..++++++.+.|++++++.++..+..+ ++.+.++.....+
T Consensus 230 ~-------------~~~~~~~l~~l~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-iv~f~~~~~~~~~ 292 (345)
T cd06450 230 R-------------ALKLWATLRRFG---RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLS-LVCFRLKPSVKLD 292 (345)
T ss_pred H-------------HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcee-EEEEEECCcchhh
Confidence 1 334444444443 4567888899999999999999999887644334444 4445554310000
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--c-ChHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--V-EPSALEDGLGRMKA 413 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~-~~~~l~~~~~~l~~ 413 (422)
.+..++...+ .++|+.+.++..+..+.++|++++ . +.++++++++.|++
T Consensus 293 -~~~~~i~~~L-~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 293 -ELNYDLSDRL-NERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred -HHHHHHHHHH-HhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 1345666665 555655555554445678999997 3 88999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=211.68 Aligned_cols=342 Identities=16% Similarity=0.166 Sum_probs=222.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|+.+|||..|....+.++ .+|.+.+++.+++.+.. ...|. .....++.+.++++. ..+.++++++|+
T Consensus 33 dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~la~~L~~~~--------~~~~~~f~~SGs 102 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIGNGYT-NEPVLRLAKKLVDAT--------FADKVFFCNSGA 102 (397)
T ss_pred CCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcccccCccC-CHHHHHHHHHHHhhC--------CCCEEEEeCCcH
Confidence 6889999998865544555 58999999999987521 11121 122345555555543 236899999999
Q ss_pred HHHHHHHHHhc-------C-CCCEEEecCCCccchHHHHhhC-CCeEEE---eeccCC--CCcccCHHHHHHhhcCCceE
Q 014603 121 QAIEVILTVLA-------R-PGANILLPRPGFPYYEARATHS-HLEVRH---FDLLPA--KGWEVDLDAVEALADENTVA 186 (422)
Q Consensus 121 ~a~~~~~~~l~-------~-~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~--~~~~~d~~~l~~~~~~~~~~ 186 (422)
+|++.+++... . ..++|+..+.+||+....+... +..... -|..+. .--..|++.+++.+.+++.+
T Consensus 103 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aa 182 (397)
T TIGR03246 103 EANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCA 182 (397)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhccCeEE
Confidence 99999998752 1 2367888888898875443322 211100 000000 00012789999988766666
Q ss_pred EEEeCCCCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeE
Q 014603 187 LVIINPGNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 265 (422)
Q Consensus 187 i~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G 265 (422)
+++..++++.|.. ++.+++++|.++|++||+++|+||+|.++.++|... ....++..++ +.+++|.++ +|+|+|
T Consensus 183 vi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~~~gv~pD---i~t~~K~lg-gG~pig 257 (397)
T TIGR03246 183 VIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPD---ILTSAKALG-GGFPIG 257 (397)
T ss_pred EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hhhhcCCCCC---EEEeehhhh-CCccee
Confidence 6655445556654 478999999999999999999999998887776532 2222332222 336799975 789999
Q ss_pred EEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCC
Q 014603 266 WLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC-ITCPK 343 (422)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~ 343 (422)
+++++ +++++.+.... ..+.+.+++.++++.++|+... -++..++++++.+++.+.|+++.. ..++.
T Consensus 258 av~~~--------~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~ 326 (397)
T TIGR03246 258 AMLTT--------TEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN---TPELLAGVKQRHDLFVDGLEKINARYNVFS 326 (397)
T ss_pred EEEEc--------HHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 99986 46777665432 2334577888888888887532 234667777888888888776521 11111
Q ss_pred -CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 344 -KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 344 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+..|.++.+.+.... ......+...+ .++|+.+.+.. .+++|++++ ++++++++++++|++++++.
T Consensus 327 ~vrg~G~~~~i~~~~~~---~~~~~~~~~~l-~~~Gv~~~~~g----~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 327 EIRGKGLLIGAVLTEAY---QGKAKQFVNAA-AEEGVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred eeecCceEEEEEEcCch---hhHHHHHHHHH-HHCCeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1223555555553210 01245565555 55699987642 478999765 78999999999999998753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=213.03 Aligned_cols=334 Identities=13% Similarity=0.113 Sum_probs=223.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+|+.++||..|...... -..+|.+.+++.++++...... +.......++++.++++. ..+.+++++||++
T Consensus 39 ~g~~~lD~~~~~~~~~~-Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs~ 109 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQ-GHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT--------GSHKVLPMNSGAE 109 (401)
T ss_pred CCCEEEEcCcchhhccC-CCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC--------CCCEEEEeCCcHH
Confidence 68889999887644322 2347899999999987632211 112223456666666654 2358999999999
Q ss_pred HHHHHHHHhcC---------CC-CEEEecCCCccchHHHHhhCCCe-------------EEEeeccCCCCcccCHHHHHH
Q 014603 122 AIEVILTVLAR---------PG-ANILLPRPGFPYYEARATHSHLE-------------VRHFDLLPAKGWEVDLDAVEA 178 (422)
Q Consensus 122 a~~~~~~~l~~---------~g-d~Vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~ 178 (422)
|++.++..+.. +| ++|++...+|++....+...+.. +..++ ..|++.+++
T Consensus 110 A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~ 182 (401)
T PRK00854 110 AVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-------FGDAEALEA 182 (401)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-------CCCHHHHHH
Confidence 99999988742 23 68888888888865443322211 11121 137899999
Q ss_pred hhcCCceEEEEeCCCCCcccccC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc
Q 014603 179 LADENTVALVIINPGNPCGNVYT-YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW 257 (422)
Q Consensus 179 ~~~~~~~~i~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~ 257 (422)
.+.++++++++++|+||+|.+++ .+++++|.++|++||+++|+||+|+++.++|... .....+...+++ + ++|.+
T Consensus 183 ~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~-~~~~~g~~~D~~-~--~~K~l 258 (401)
T PRK00854 183 AITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL-AEEHEGIEADVT-L--IGKAL 258 (401)
T ss_pred HhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh-HHhhcCCCCCEE-E--ecccc
Confidence 99888999999999999999886 4569999999999999999999998776665321 111112122233 3 36997
Q ss_pred CCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 258 IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 258 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
+...+|+|+++++ +++++.+.... ..+.+.+++.++++.++|+...+ ....+.++++.+++.+.|+++
T Consensus 259 ~gg~~~ig~v~~~--------~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~ 327 (401)
T PRK00854 259 SGGFYPVSAVLSN--------SEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSI 327 (401)
T ss_pred cCCccCeEEEEEc--------HHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhh
Confidence 6544799999986 45666665332 22345688899999998875321 335677888888888888876
Q ss_pred CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 337 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
....+......|.++.+.+.... ....++...+. ++||.+.+.. .+++|++++ +++++|++++++|+++
T Consensus 328 ~~~~~~~~~g~g~~~~i~~~~~~----~~~~~~~~~L~-~~GV~v~~~~----~~~lR~~p~~~~t~e~i~~~i~~l~~~ 398 (401)
T PRK00854 328 RSNIVREVRGRGLMLAVELEPEA----GGARQYCEALK-ERGLLAKDTH----DHTIRLAPPLVITREQVDWALEQIAKV 398 (401)
T ss_pred ccCceEEEeccceEEEEEEecCc----hhHHHHHHHHH-HCCeEEecCC----CCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence 32111111222444444442210 13456666665 4699997532 479999985 7899999999999987
Q ss_pred HH
Q 014603 415 YD 416 (422)
Q Consensus 415 ~~ 416 (422)
+.
T Consensus 399 l~ 400 (401)
T PRK00854 399 LA 400 (401)
T ss_pred hh
Confidence 64
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=211.02 Aligned_cols=314 Identities=18% Similarity=0.169 Sum_probs=216.5
Q ss_pred cHHHHHHHHHHhhCC--CCCCCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc------CCC
Q 014603 64 ASVAVDAIVHSVRSA--RFNCYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA------RPG 134 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~--~~~~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~------~~g 134 (422)
.+.+.+++....... ....|+. .....++++.+++++ +++++++++++|+++++..++.++. ++|
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g 106 (373)
T TIGR03812 33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLL------HLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRT 106 (373)
T ss_pred hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHh------CCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCC
Confidence 355667776665432 1112321 122356677777777 4566788899999999988877653 467
Q ss_pred CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 135 ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 135 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
|+|++++++|.++...++..|++++.++.+ .++.+|++++++.+++++..++++.|+||||... ++++|.++|++
T Consensus 107 ~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~---~~~~i~~l~~~ 181 (373)
T TIGR03812 107 PNIIVPESAHFSFEKAAEMLGLELRYAPLD--EDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQID---DIEELSKIALE 181 (373)
T ss_pred cEEEECCcchHHHHHHHHHcCCeEEEEeeC--CCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccC---CHHHHHHHHHH
Confidence 899999999999999999999999999875 3467899999999887776666666899999994 57788888999
Q ss_pred cCcEEEEcccccccccC----CCC--CCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh
Q 014603 215 LGIMVIADEVYDHLAFG----NTP--FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF 288 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~----~~~--~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 288 (422)
+|+++|+|++|+.+... +.. ...+...+.+ .+..|.+|+ +.++.|+|+++..+ +++.+.+...
T Consensus 182 ~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d---~~~~s~~K~-~~~~~~~G~~~~~~-------~~~~~~l~~~ 250 (373)
T TIGR03812 182 NGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQ---SITIDPHKM-GLSPIPAGGILFRS-------KSYLKYLSVD 250 (373)
T ss_pred cCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCC---EEEECcccc-CCCcCCceEEEEeC-------HHHHhhhccc
Confidence 99999999999754311 000 1111111222 455688895 67777888776543 3455554321
Q ss_pred hhh---------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc
Q 014603 289 LNI---------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL 359 (422)
Q Consensus 289 ~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~ 359 (422)
..+ .++.+.....++..+++...+..+++..+++.++++++++.|+++ ++..+..|. ..++.+.++
T Consensus 251 ~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~v~~~~~--- 325 (373)
T TIGR03812 251 APYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPV-LNIVAFEVD--- 325 (373)
T ss_pred CcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCC-ceEEEEEeC---
Confidence 111 123445566677777775556778888999999999999999998 443232333 445556554
Q ss_pred ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 360 LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
+..++...| .++||.+.++. .++++|++++ +++++++++++.|++
T Consensus 326 -----~~~~v~~~L-~~~gi~v~~~~---~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 326 -----DPEEVRKKL-RDRGWYVSVTR---CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred -----CHHHHHHHH-HHCCceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 234566665 55699997653 3578999998 789999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=208.42 Aligned_cols=289 Identities=20% Similarity=0.211 Sum_probs=204.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCC
Q 014603 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHL 156 (422)
Q Consensus 81 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~ 156 (422)
.+|+. ....+|++.++++.+ . +..++++||++|+..++ .++++||+|++++|.|++. ...++..|+
T Consensus 47 ~r~~~-pt~~~le~~la~l~g------~--~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~ 116 (366)
T PRK08247 47 SRTGN-PTRGVLEQAIADLEG------G--DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV 116 (366)
T ss_pred cCCCC-chHHHHHHHHHHHhC------C--CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence 34443 457899999999983 2 33577888899999876 5778999999999999874 334456788
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
+++.++. .|++.+++.++++++++++++|+||+|.. .++++|+++|+++|+++|+|++|...... .
T Consensus 117 ~v~~vd~-------~d~~~l~~~i~~~tklv~le~P~NP~~~~---~dl~~I~~la~~~g~~lIvD~t~~~~~~~----~ 182 (366)
T PRK08247 117 RFVYVNT-------ASLKAIEQAITPNTKAIFIETPTNPLMQE---TDIAAIAKIAKKHGLLLIVDNTFYTPVLQ----R 182 (366)
T ss_pred eEEEECC-------CCHHHHHHhcccCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcccccc----C
Confidence 8877753 37899999998899999999999998765 89999999999999999999999532211 1
Q ss_pred CccccCCCCCeEEEecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHH
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
++ .. ...+++.|+||.++++ +++.|++++++ +++.+++...... ....+++.++.+...|+.
T Consensus 183 p~-~~---g~di~i~S~sK~~~g~~d~~~G~iv~~~-------~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t----- 246 (366)
T PRK08247 183 PL-EE---GADIVIHSATKYLGGHNDVLAGLVVAKG-------QELCERLAYYQNAAGAVLSPFDSWLLIRGMKT----- 246 (366)
T ss_pred ch-hc---CCcEEEeecceeccCCCceeeeEEecCh-------HHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-----
Confidence 11 11 2249999999998653 56889988753 3566666655543 235566777777776664
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CCceEEEEecCcccccCCCCHHHHHHH---------HHHhcCeEEecC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALK---------LAKEESVIVLPG 384 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~~gi~v~~g 384 (422)
+..+.++.+++++.+.+.|+++|++..+..| .+|++.| .++... ....+... +.....+.+.|+
T Consensus 247 l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~-----~~~~~~~~l~~~~~~~slg~~~sl~~~p~ 320 (366)
T PRK08247 247 LALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEE-----WVNPFLKSLKLITFAESLGGVESFITYPA 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHH-----HHHHHHHcCCcceEccCCCCCceEEECCc
Confidence 4556667799999999999999888744456 6676665 564210 01122221 112334556676
Q ss_pred CCCCC-------------CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 385 ITVGL-------------KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 385 ~~~~~-------------~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
..++. ++.+|+|++. |+++.+++.|++++++
T Consensus 321 ~~~~~~~~~~~r~~~gi~~~~~R~svGl--E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 321 TQTHADIPEEIRIANGVCNRLLRFSVGI--ENVEDLIADLKQAFKQ 364 (366)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 43321 3689999997 4677778888888765
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=213.47 Aligned_cols=344 Identities=15% Similarity=0.162 Sum_probs=220.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+|+.++||..|...... -..+|.+.+++.+++....... ........++++.++++. ..+.++++++|++
T Consensus 29 dg~~~lD~~~~~~~~~~-Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~SGs~ 99 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQ-GHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF--------GYDKVLPMNSGAE 99 (400)
T ss_pred CCCEEEEcccCHhhccC-CcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC--------CCCEEEEeCCcHH
Confidence 68889999888654311 2357899999999986532111 001112334444444432 2368899999999
Q ss_pred HHHHHHHHhcC----------CCCEEEecCCCccchHHHHhhCCCeEEE----eeccCC--CCcccCHHHHHHhhc-CCc
Q 014603 122 AIEVILTVLAR----------PGANILLPRPGFPYYEARATHSHLEVRH----FDLLPA--KGWEVDLDAVEALAD-ENT 184 (422)
Q Consensus 122 a~~~~~~~l~~----------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~----~~~~~~--~~~~~d~~~l~~~~~-~~~ 184 (422)
|++.+++.+.. .+++|++.+.+|++.............. .+..+. .-...|++.+++.++ +++
T Consensus 100 A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 179 (400)
T PTZ00125 100 AGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNV 179 (400)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCe
Confidence 99999987631 3478999999998865443322211100 010000 000138899999886 567
Q ss_pred eEEEEeCCCCCcccccC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 185 VALVIINPGNPCGNVYT-YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
+++++..++||+|.+++ .+.+++|.++|++||+++|+||+|.++.++|... .....+..++++ ++||.++.+++|
T Consensus 180 ~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~-~~~~~~~~pd~~---~~sK~l~~g~~~ 255 (400)
T PTZ00125 180 AAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL-AHDHEGVKPDIV---LLGKALSGGLYP 255 (400)
T ss_pred EEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh-HHHhcCCCCCEE---EEcccccCCCcC
Confidence 77777677999999885 5569999999999999999999998777666432 111112222222 467998655569
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC----CC
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI----PC 338 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 338 (422)
+||++++ +++.+.+.... ..+.+.+++.+.++.++|+...+.. ..++++++.+.+++.|+++ +.
T Consensus 256 ig~v~~~--------~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~ 324 (400)
T PTZ00125 256 ISAVLAN--------DDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEK---LAENAQRLGEVFRDGLKELLKKSPW 324 (400)
T ss_pred cEEEEEc--------HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999986 46777665433 2234667888888888876533222 2344445555555555543 22
Q ss_pred CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 339 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
+. ...+ .|.++++.++... + ....++...++ ++||.+.|+. .+++|++++ .+++++++++++|.+++.
T Consensus 325 ~~-~~~~-~g~~~~v~~~~~~--~-~~~~~~~~~l~-~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~ 394 (400)
T PTZ00125 325 VK-EIRG-KGLLNAIVFDHSD--G-VNAWDLCLKLK-ENGLLAKPTH----DNIIRFAPPLVITKEQLDQALEIIKKVLK 394 (400)
T ss_pred eE-EEec-ccEEEEEEEccCc--c-hHHHHHHHHHH-HCCeEEeecC----CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 22 1133 4677788775310 0 13456666664 5699998863 578999975 889999999999999998
Q ss_pred Hhcc
Q 014603 417 RHAK 420 (422)
Q Consensus 417 ~~~~ 420 (422)
++..
T Consensus 395 ~~~~ 398 (400)
T PTZ00125 395 SFDS 398 (400)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-25 Score=209.03 Aligned_cols=333 Identities=13% Similarity=0.131 Sum_probs=229.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~ 121 (422)
+|+.+|||..|.... ++..+|++.+++.+++.... .++. ....++++.+++.+.. .++ .+++++|+++
T Consensus 27 dg~~~lD~~s~~~~~--~lG~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SGse 95 (375)
T PRK04260 27 DGKKYLDFSSGIGVT--NLGFHPQVQQALQKQAGLIW--HSPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSGAE 95 (375)
T ss_pred CCCEEEECCCCcccc--cCCCCHHHHHHHHHHHHhcC--cccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCccHH
Confidence 688899998875332 34447899999999987532 2322 3456788899988742 233 4689999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHH-HHhhCCCeEEE------eeccCCCCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEA-RATHSHLEVRH------FDLLPAKGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~------~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
|+..+++... ..+++|++.+..||+... .....+.+... ++..+... ..|++.+++.+++++.++++..+
T Consensus 96 A~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dl~~l~~~l~~~~a~vi~e~v 174 (375)
T PRK04260 96 ANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI-FNDLNSVKALVNKNTAAVMLELV 174 (375)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC-CCCHHHHHHhcCCCeEEEEECCe
Confidence 9998888753 345789999988887532 22222211100 00000000 13788999888767777777788
Q ss_pred CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
+|++|... +.+.++++.++|+++|+++|+||+|.++.++|... .....+..++ +.||||.+ .+|+|+||++++
T Consensus 175 ~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~-~~~~~~~~pd---i~t~sK~l-~~G~~ig~~~~~- 248 (375)
T PRK04260 175 QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY-AFEHYGIEPD---IFTLAKGL-ANGVPVGAMLAK- 248 (375)
T ss_pred ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh-hhHhhCCCCC---EEEecccc-cCCcceEEEEEc-
Confidence 99999864 56789999999999999999999998876665422 2112222223 34789996 478999999997
Q ss_pred CCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce
Q 014603 272 PNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM 349 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 349 (422)
+++.+.+.... ..+.+.+++.++++.++|+... +...++.++..+.+++.+.+.+.+.+.+. . .+..|.
T Consensus 249 -------~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~g~ 319 (375)
T PRK04260 249 -------SSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVT-T-VRGLGY 319 (375)
T ss_pred -------HHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCee-E-Eeccce
Confidence 35666665432 2345668889999999997643 45566667777777777777777664333 2 334689
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
++|++++. +..++...+ .++||.+.|+. .+.+|++++ .+++++++++++|+++
T Consensus 320 ~~~~~~~~-------~~~~~~~~l-~~~Gi~v~~~~----~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 320 MIGIETTA-------DLSQLVEAA-RDKGLIVLTAG----TNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred EEEEEecC-------cHHHHHHHH-HhCCCEEecCC----CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 99998843 345565555 56799998753 478999996 6899999999999875
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=212.20 Aligned_cols=287 Identities=16% Similarity=0.161 Sum_probs=197.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEE
Q 014603 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRH 160 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~ 160 (422)
+..+..+|+++++++.+ .+++++++||++|+..++.+++++||+|+++.|.|..+.. .++..|++++.
T Consensus 62 ~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 133 (400)
T PRK06234 62 GNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTF 133 (400)
T ss_pred CCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEE
Confidence 45678999999999983 2468899999999999999999999999999999876543 34667888887
Q ss_pred eeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCCCc
Q 014603 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL--GIMVIADEVYDHLAFGNTPFVPM 238 (422)
Q Consensus 161 ~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~ 238 (422)
++. .|++++++.++++++++++++|+||||.+.+ +++|.++|+++ |+++|+|++|....+. .++
T Consensus 134 vd~-------~d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~----~~l 199 (400)
T PRK06234 134 VDT-------SNLEEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ----RPL 199 (400)
T ss_pred ECC-------CCHHHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC----Cch
Confidence 764 2789999999889999999999999999964 78888888887 9999999999864332 122
Q ss_pred cccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhchHHH
Q 014603 239 GVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 239 ~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
..+. .+++.|+||.++++|.++ ||++++ ++++++++... ......++...+.+...|+.
T Consensus 200 -~~g~---Divv~S~sK~l~g~g~~~gG~v~~~--------~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t----- 262 (400)
T PRK06234 200 -QLGA---DVVVHSATKYLNGHGDVIAGFVVGK--------EEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT----- 262 (400)
T ss_pred -hhCC---cEEEeeccccccCCCCceeEEEEec--------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-----
Confidence 2222 389999999998888775 888875 35666665432 12335566666666555654
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEES 378 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 378 (422)
+..+.++..++...+.+.|+++|.+..+..|. .|..+.++++.. ......+++.| +-.+
T Consensus 263 l~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~----~~~~~~f~~~l-~~~~ 337 (400)
T PRK06234 263 LQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG----VEEGKVVMNNV-KLAT 337 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc----HHHHHHHHHhC-Ccce
Confidence 45566667788888888998876654333332 233555666421 00123333333 3233
Q ss_pred eEEecCCCCC----------------------C-CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 379 VIVLPGITVG----------------------L-KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 379 i~v~~g~~~~----------------------~-~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+.+.-|.... . ++.||+|++. |+.+.++..|+++++.
T Consensus 338 ~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al~~ 397 (400)
T PRK06234 338 LAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL--EDVDDIIADLKQALDL 397 (400)
T ss_pred EeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHH
Confidence 3322222110 1 3689999997 3566666667666654
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=209.27 Aligned_cols=216 Identities=19% Similarity=0.200 Sum_probs=165.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH-----hhCCCeEEE
Q 014603 86 TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA-----THSHLEVRH 160 (422)
Q Consensus 86 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~-----~~~g~~~~~ 160 (422)
.+...+|++.++++.+ .+.+++++||++|+..++.+++++||+|+++.|.|.++.... +..|++++.
T Consensus 75 ~Pt~~~LE~~lA~l~g--------~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~ 146 (418)
T PLN02242 75 NPTVLNLGRQMAALEG--------TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTF 146 (418)
T ss_pred ChhHHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEE
Confidence 4557899999999883 356789999999999999999999999999999998775544 236666665
Q ss_pred eeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc
Q 014603 161 FDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG 239 (422)
Q Consensus 161 ~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~ 239 (422)
++. .|++.+++.+++ +++++++++|+||||.++ ++++|+++|+++|++||+|++|..+.+.. .
T Consensus 147 ~d~-------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~---dl~~I~~la~~~gi~livDea~~~~~~~~------~ 210 (418)
T PLN02242 147 VDI-------TDLEAVKKAVVPGKTKVLYFESISNPTLTVA---DIPELARIAHEKGVTVVVDNTFAPMVLSP------A 210 (418)
T ss_pred cCC-------CCHHHHHHhcCcCCCEEEEEecCCCCCCccc---CHHHHHHHHHHhCCEEEEECCCCccCCCH------H
Confidence 542 378999999987 499999999999999985 68899999999999999999997654321 1
Q ss_pred ccCCCCCeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHH
Q 014603 240 VFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFF 315 (422)
Q Consensus 240 ~~~~~~~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~ 315 (422)
.++ ..+++.|+||.++++|.+ .||++++ +++++.+..... ...++....|.|...+... ..+
T Consensus 211 ~~g---~divv~S~SK~l~g~g~~~gG~iv~~--------~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l---~tl 276 (418)
T PLN02242 211 RLG---ADVVVHSISKFISGGADIIAGAVCGP--------AELVNSMMDLHHGALMLLGPTMNPKVAFELSERL---PHL 276 (418)
T ss_pred HcC---CcEEEEeCccccCCCCCceEEEEEcC--------HHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC---CcH
Confidence 222 238899999999888987 5888875 457777765532 1234455566666555543 245
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCC
Q 014603 316 SKITDILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~~~~ 340 (422)
..+.++++++++.+.+.|+++ ++.
T Consensus 277 ~~r~~~~~~~a~~la~~L~~~-~~~ 300 (418)
T PLN02242 277 SLRMKEHCRRAMEYAKRMKEL-GLK 300 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 567778899999999999987 344
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=200.51 Aligned_cols=349 Identities=15% Similarity=0.139 Sum_probs=227.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC----CCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA----RFNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
.+...++|+.+..+ |.++.|.++|...+... ....|.. ..++++.|+.+|++++ .++++|+||
T Consensus 40 ~~~~~vyld~~at~-----p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiFt 108 (428)
T KOG1549|consen 40 HGTRPVYLDNQATG-----PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVFT 108 (428)
T ss_pred CCCccEEEecCcCC-----CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEEe
Confidence 56788999999866 77899999998887652 2112332 3347889999999994 578889999
Q ss_pred cCHHHHHHHHHHHhc-CCCC----EEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEE
Q 014603 117 LGCTQAIEVILTVLA-RPGA----NILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV 188 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~-~~gd----~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~ 188 (422)
+|+|++++++++.+. ..+| .|++.+..|.+... ..+..|..++.+|+. +.+..|.+.+++.++++|+++.
T Consensus 109 s~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~ 186 (428)
T KOG1549|consen 109 SGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRSKTRLVS 186 (428)
T ss_pred CCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCCCceEEE
Confidence 999999999999873 3445 89999988877644 444568999999986 4456899999999999999999
Q ss_pred EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 189 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
+.+.+|.+|+.+ ++++|+++|+++|+++++|.+|+. |+...++..++.| ++..|.+|+||++| +|+++
T Consensus 187 I~~Vnn~~gv~~---Pv~EI~~icr~~~v~v~~DaAQav----G~i~vDV~eln~D---~~s~s~HK~ygp~~--iGaLY 254 (428)
T KOG1549|consen 187 IMHVNNEIGVLQ---PVKEIVKICREEGVQVHVDAAQAV----GKIPVDVQELNAD---FLSISAHKIYGPPG--IGALY 254 (428)
T ss_pred EEecccCccccc---cHHHHHHHhCcCCcEEEeehhhhc----CCccccHHHcCch---heeeecccccCCCc--ceEEE
Confidence 999999999995 588888899999999999999987 7778888888887 88889999999999 89999
Q ss_pred eeC-CCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCC
Q 014603 269 TSD-PNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPE 346 (422)
Q Consensus 269 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~ 346 (422)
++. ...+...|.+...........++...+.+....++.+.. ..+.......+++..+.+...+.. .+.+.....+.
T Consensus 255 vr~~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~-~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~ 333 (428)
T KOG1549|consen 255 VRRKRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFV-NKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGK 333 (428)
T ss_pred EccCCCcccccCcccCCccccccccCCcCchhhhhhHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCcc
Confidence 863 111111111111111111234566667777666666542 122222222333344444444432 33332111111
Q ss_pred C--ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC-------------CCCCCCeEEEEec--cChHHHHHHHH
Q 014603 347 G--SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI-------------TVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 347 ~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-------------~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
. .....+.++ +..+..-..+. .....+.|.....-. .+-....+||+++ ++++|++++++
T Consensus 334 ~~~~~~~~~~~~--~~~g~~~~~~~-~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~ 410 (428)
T KOG1549|consen 334 SRYPGLVSLSFP--YVEGESLLMDL-KDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVD 410 (428)
T ss_pred cccccceeeecc--cccCcchhhhh-hhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHH
Confidence 1 011112222 00000000000 001111111111100 0111578999998 78999999999
Q ss_pred HHHHHHHHhcc
Q 014603 410 RMKAFYDRHAK 420 (422)
Q Consensus 410 ~l~~~~~~~~~ 420 (422)
.+.+.+..++.
T Consensus 411 ~i~~~v~~~~~ 421 (428)
T KOG1549|consen 411 AIKKLVSLLRE 421 (428)
T ss_pred HHHHHHHhccc
Confidence 99999877654
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=206.39 Aligned_cols=330 Identities=15% Similarity=0.180 Sum_probs=205.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC-CCCCC-----CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR-FNCYS-----STVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~-----~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|..++||...+ +.++..+|++.+++.+++.... ..... ......++++.+++++ +. ..+++
T Consensus 44 ~g~~~ld~~s~~---~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~------~~---~~~~~ 111 (402)
T PRK07505 44 DGHTFVNFVSCS---YLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELF------GA---SVLTF 111 (402)
T ss_pred CCceEEEeecCC---ccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHh------CC---CEEEE
Confidence 588899997754 3444678999999999987521 11111 1223456677777766 22 45555
Q ss_pred cCHHHHHHHHHHHhc----CCC-CEEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEE
Q 014603 117 LGCTQAIEVILTVLA----RPG-ANILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV 188 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~----~~g-d~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~ 188 (422)
+++++|...++..+. .+| ..|++.+..||+... .....+.+++.++. .|++.+++.+++++++++
T Consensus 112 ~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~~~~v 184 (402)
T PRK07505 112 TSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNKTVAY 184 (402)
T ss_pred CChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCCCEEE
Confidence 566778877765432 223 246666655554321 11123445666553 378899988877788999
Q ss_pred EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC--CCCCCCccccC--CCCCeEEEecCccccCCCCcee
Q 014603 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG--NTPFVPMGVFG--SIVPVLTLGSISKRWIVPGWRL 264 (422)
Q Consensus 189 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~--~~~~~i~i~s~sK~~~~~G~r~ 264 (422)
+++|+||+|.+++ +++|.++|+++|+++|+||+|+...++ |... ....++ ..+++++++|+||.|+++|
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~-~~~~~~~~~~d~~i~~~s~sK~~~~~G--- 257 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGY-VRSELDYRLNERTIIAASLGKAFGASG--- 257 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHHHcCCCCCCCeEEEEechhhhhccC---
Confidence 9999999999976 677788899999999999998654332 3221 112222 2356799999999998777
Q ss_pred EEEEeeCCCCcccchhHHHHHHhhhhh---ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014603 265 GWLVTSDPNGILQDSGIVDSIKSFLNI---SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITC 341 (422)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 341 (422)
||++.++ +++.+.+...... .+++++++++++.++++...++++.+..++++++.+.+...+...
T Consensus 258 g~~~~~~-------~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----- 325 (402)
T PRK07505 258 GVIMLGD-------AEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE----- 325 (402)
T ss_pred eEEEeCC-------HHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----
Confidence 8876543 4677777654322 124455777777777763333444455555555554443322111
Q ss_pred CCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 342 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 342 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
. .....++.++.++.. ....++...++ ++||.+.++..+.. .+++|++++ ++++++++++++|+++++
T Consensus 326 ~-~g~~~~i~~~~~~~~-----~~~~~~~~~l~-~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 326 Q-SGSFLPIRLIYIGDE-----DTAIKAAKQLL-DRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILD 398 (402)
T ss_pred C-CCCCCCEEEEEeCCH-----HHHHHHHHHHH-HCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 0 111112223333211 02455666664 66999998754432 368999998 799999999999999876
Q ss_pred H
Q 014603 417 R 417 (422)
Q Consensus 417 ~ 417 (422)
+
T Consensus 399 ~ 399 (402)
T PRK07505 399 E 399 (402)
T ss_pred h
Confidence 5
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-24 Score=195.53 Aligned_cols=330 Identities=19% Similarity=0.187 Sum_probs=245.4
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
.+.++.|+++|...... +..+ ...+.++.+.+...++. . +.+-++++++||.++++++.++++|||+||
T Consensus 14 ~~v~~~V~~am~~~~~~----h~s~~F~~~~~~~~~~L~~v~~t----~-~~~~~ll~gsGt~amEAav~sl~~pgdkVL 84 (383)
T COG0075 14 VPVPPRVLLAMARPMVG----HRSPDFVGIMKEVLEKLRKVFGT----E-NGDVVLLSGSGTLAMEAAVASLVEPGDKVL 84 (383)
T ss_pred CCCCHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHhcC----C-CCcEEEEcCCcHHHHHHHHHhccCCCCeEE
Confidence 36789999998886543 2222 12244555555555521 1 235667889999999999999999999999
Q ss_pred ecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC--CceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 139 LPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--NTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 139 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
+...+.++ |.++++.+|.+++.+...+ +-.+|++++++.+++ +.+++.+++...+||+. .++++|+++|++
T Consensus 85 v~~nG~FG~R~~~ia~~~g~~v~~~~~~w--g~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvl---npl~~I~~~~k~ 159 (383)
T COG0075 85 VVVNGKFGERFAEIAERYGAEVVVLEVEW--GEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVL---NPLKEIAKAAKE 159 (383)
T ss_pred EEeCChHHHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCccEEEEEeccCccccc---CcHHHHHHHHHH
Confidence 99888865 5789999999999887653 445899999999974 46788899999999999 679999999999
Q ss_pred cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCC-----------CcccchhHH
Q 014603 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPN-----------GILQDSGIV 282 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~-----------~~~~~~~~~ 282 (422)
||.++|+|.+.+. |.....+..++.| +++.+..|.+++ || +|.+..++.. ..++-..+.
T Consensus 160 ~g~l~iVDaVsS~----Gg~~~~vd~wgiD---v~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~ 230 (383)
T COG0075 160 HGALLIVDAVSSL----GGEPLKVDEWGID---VAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWL 230 (383)
T ss_pred cCCEEEEEecccC----CCcccchhhcCcc---EEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHH
Confidence 9999999999885 3334456666666 888899999865 66 6777775321 122112233
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CceEEEEecCcccc
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLL 360 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~ 360 (422)
+.+++...+.++++....+++.++|+...+++++.+.++++++.+.+++.++.+ |+..+..+. ......+..|.+
T Consensus 231 ~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g-- 307 (383)
T COG0075 231 KYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEG-- 307 (383)
T ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCC--
Confidence 333332334568888899999999998888889999999999999999999998 777443221 122333445543
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
. ++.+....+++++|+.+.+|........+||+.. ...+++..++.+|+.+++++.
T Consensus 308 --~-~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 308 --V-DDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred --C-CcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 2 3444555778888999999887776789999986 688999999999999998863
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=211.22 Aligned_cols=310 Identities=14% Similarity=0.115 Sum_probs=214.9
Q ss_pred CCcHHHHHHHHHHhhCCCCCCC--CCC------CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc--
Q 014603 62 RTASVAVDAIVHSVRSARFNCY--SST------VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-- 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y--~~~------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-- 131 (422)
++++.+.+++.+.+.....+.. ... ..+.++|+.+++++ +.++++|++++|++++++.++.++.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------g~~~~~v~~~~g~t~a~~~~l~~l~~~ 82 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL------GADTEEVIFTSGATESNNLAILGLARA 82 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 6778999999888753211111 110 12467888888888 4577899999999999999998875
Q ss_pred --CCC-CEEEecCCCccchH---HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 132 --RPG-ANILLPRPGFPYYE---ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 132 --~~g-d~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
.+| +.|++...+|+.+. ..++..|.+++.++.+. ++.+|++.+++.++++++++++++++||||.+++ +
T Consensus 83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~ 157 (353)
T TIGR03235 83 GEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---I 157 (353)
T ss_pred cccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---H
Confidence 355 78888887776553 33445688898888753 4568999999999888999999999999999965 7
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSI 285 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 285 (422)
++|.++|+++|+++|+|++++. |....++...+.| +++.|++|+++.+| +|++++++..... ..+
T Consensus 158 ~~I~~l~~~~~~~~ivD~a~~~----g~~~~~~~~~~~D---~~~~s~~K~~gp~g--~g~l~~~~~~~~~------~~~ 222 (353)
T TIGR03235 158 REIAEVLEAHEAFFHVDAAQVV----GKITVDLSADRID---LISCSGHKIYGPKG--IGALVIRKRGKPK------APL 222 (353)
T ss_pred HHHHHHHHHcCCEEEEEchhhc----CCccccccccCCC---EEEeehhhcCCCCc--eEEEEEccCcccc------ccc
Confidence 8888899999999999999886 3323334333333 77889999876566 7999887431100 001
Q ss_pred Hh--------hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--ceEEEEec
Q 014603 286 KS--------FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG--SMFVMVKL 355 (422)
Q Consensus 286 ~~--------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--g~~~~~~~ 355 (422)
.. .....++++.....++.++++.. ....++..++++++++.+++.|++ +++++...+.. ..+..+.+
T Consensus 223 ~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~ 300 (353)
T TIGR03235 223 KPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSI 300 (353)
T ss_pred CceeeCCCCcCccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEe
Confidence 11 01123466667777777777753 346778889999999999999988 58774322321 12333333
Q ss_pred CcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC----CeEEEEeccChHHHHHH
Q 014603 356 NYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK----DWLRITFAVEPSALEDG 407 (422)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----~~iRis~~~~~~~l~~~ 407 (422)
+. .+..++...| ++ +|.+.+|..|+.. .++|.+++.+++++..+
T Consensus 301 ~~------~~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~ 348 (353)
T TIGR03235 301 DG------VNSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGA 348 (353)
T ss_pred CC------cCHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCcc
Confidence 32 1455665555 55 8999999998653 36888888766655443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-25 Score=211.64 Aligned_cols=326 Identities=20% Similarity=0.203 Sum_probs=214.1
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC--CCCHHHHHHHHH---HHhhcCCCCCCCCCEEEecCHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST--VGILPARRAIAD---YLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~--~g~~~lr~~ia~---~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
..++|+.|.+. +..|..+.+++...- ....|.+. .....+++.+++ ++.+.+| ++.+++++++|++
T Consensus 69 ~~~~lg~g~~~----~~~p~~~~~~~~~~~---~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g--~~~~~v~~~~g~t 139 (447)
T PRK00451 69 YPSFLGAGAYD----HYIPAVVDHIISRSE---FYTAYTPYQPEISQGTLQAIFEYQTMICELTG--MDVANASMYDGAT 139 (447)
T ss_pred CcccCcccccC----CcCcHHHHHHHhchh---HHHhcCCCCCccchHHHHHHHHHHHHHHHHhC--CCcceEEecCcHH
Confidence 56788888755 455556555443321 11234331 112334444442 2244443 4566899999999
Q ss_pred HHHHHHHHHhc-CCCCEEEecCCCccchHHHHhh----CCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCC
Q 014603 121 QAIEVILTVLA-RPGANILLPRPGFPYYEARATH----SHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNP 195 (422)
Q Consensus 121 ~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~np 195 (422)
++++.++.++. .+||+|+++++.|+.+...+.. .|.+++.++.++ + .+|++.+++.++++++++++++| |+
T Consensus 140 ~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~~t~~v~l~~p-n~ 215 (447)
T PRK00451 140 ALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDDDTAAVVVQYP-NF 215 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCCCeEEEEEECC-CC
Confidence 99999988874 7899999999999887766543 688999988754 3 68999999999889999999999 89
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEE--cccccccccCCCCCCCccccCCCCCeEEEe---cCccccCCCCceeEEEEee
Q 014603 196 CGNVYTYQHLQKIAETAKKLGIMVIA--DEVYDHLAFGNTPFVPMGVFGSIVPVLTLG---SISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 196 tG~~~~~~~l~~i~~~~~~~~~~li~--D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~---s~sK~~~~~G~r~G~~~~~ 270 (422)
||.+ +++++|.++|+++|+++++ |.+..+ ... ....++.| ++++ +++|.+.+.|+++||++++
T Consensus 216 tG~v---~~l~~I~~~a~~~~~~~iv~~d~~~~g-----~~~-~~~~~~~D---~~~~s~~k~~~~~~~~Gpg~G~l~~~ 283 (447)
T PRK00451 216 FGVI---EDLEEIAEIAHAGGALFIVGVDPVSLG-----LLK-PPGEYGAD---IVVGEGQPLGIPLSFGGPYLGFFATR 283 (447)
T ss_pred CCee---CCHHHHHHHHHHCCCEEEEEcChHHhc-----cCC-CcccCCCC---EEEECCCcCCCCCCCCCCCchHHHhh
Confidence 9999 5688899999999999988 544321 111 11233333 5555 5666667778889999875
Q ss_pred CCCCcccchhHHHHHH----------------------------hhhhhccCc-chHHH-HHHHHHHhhchHHHHHHHHH
Q 014603 271 DPNGILQDSGIVDSIK----------------------------SFLNISSDP-ATFIQ-GAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~-~~~~~-~a~~~~l~~~~~~~~~~~~~ 320 (422)
+++.+.+. ........+ +...+ .++..+++...+.++++..+
T Consensus 284 --------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~ 355 (447)
T PRK00451 284 --------KKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAE 355 (447)
T ss_pred --------HHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 34444421 111111111 11122 23333344334577899999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCceEEE--EecCcccccCCCCHHHHHHHHHHhcCeEE-ecCCCCC--CCCeEEE
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPEGSMFVM--VKLNYSLLEGINSDMEFALKLAKEESVIV-LPGITVG--LKDWLRI 395 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~gi~v-~~g~~~~--~~~~iRi 395 (422)
++.++++++.+.|++++++.+. .+++|.+ +.++. +..++.++|.++ ||.+ .++..+. ..+++|+
T Consensus 356 ~~~~~~~~l~~~L~~~~g~~~~---~~~~~~~~~v~~~~-------~~~~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rv 424 (447)
T PRK00451 356 QNHQKAHYLAERLAEIGGVELF---DGPFFNEFVVRLPK-------PAEEVNEALLEK-GILGGYDLGRYYPELGNHLLV 424 (447)
T ss_pred HHHHHHHHHHHHHhhcCCEEec---CCCeEEEEEEecCC-------CHHHHHHHHHhc-CCCCCcccccccCCcCCEEEE
Confidence 9999999999999999887732 3334433 34321 467787877654 6552 3444433 2578999
Q ss_pred Eec--cChHHHHHHHHHHHHHH
Q 014603 396 TFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 396 s~~--~~~~~l~~~~~~l~~~~ 415 (422)
|++ +++++++++++.|++++
T Consensus 425 s~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 425 CVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred ecCCCCCHHHHHHHHHHHHHHh
Confidence 997 78999999999998754
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-24 Score=202.80 Aligned_cols=347 Identities=15% Similarity=0.132 Sum_probs=229.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++.+.. .+... ...+.+..+++.|....+ ..+.++++++|++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~--~~~~~-~~~~~~~~la~~L~~~~~---~~~~v~f~~sGse 109 (408)
T PRK04612 37 DQGREYLDLAAGIAVCGLG-HNDPDLVAALTEQAGKLW--HTSNV-FYSAPPLKLAEELVTASR---FAEKVFLCNSGTE 109 (408)
T ss_pred CCCCEEEEcCccHhhccCC-CCCHHHHHHHHHHHHhcc--ccccc-cCCHHHHHHHHHHHhhCC---CCCEEEEcCchHH
Confidence 4689999999886553333 457899999999987532 22221 123444556666654322 1268999999999
Q ss_pred HHHHHHHHhcC--------C-CCEEEecCCCccchHHHHhhC-CCeEEE---eeccCC---CCcccCHHHHHHhhcCCce
Q 014603 122 AIEVILTVLAR--------P-GANILLPRPGFPYYEARATHS-HLEVRH---FDLLPA---KGWEVDLDAVEALADENTV 185 (422)
Q Consensus 122 a~~~~~~~l~~--------~-gd~Vl~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~---~~~~~d~~~l~~~~~~~~~ 185 (422)
|++.+++.... + ..+|+....+||+....+... +..... .+..+. -.+ .|++.+++.+.++..
T Consensus 110 A~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~ 188 (408)
T PRK04612 110 ANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMAGGDV 188 (408)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhCCCCE
Confidence 99999876431 1 247999999999875544332 211111 111100 011 277888888876778
Q ss_pred EEEEeCCCCCcccccC--HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 186 ALVIINPGNPCGNVYT--YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~--~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++++..|.+++|.+++ .+.+++|.++|++||+++|+||+|.++.++|... .... .+....+.+++|.++ +|+|
T Consensus 189 aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-a~~~---~~~~pdi~t~~K~l~-~G~p 263 (408)
T PRK04612 189 AAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF-AHWQ---EQVTPDIVTLAKALG-GGFP 263 (408)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh-hhhh---cCCCCCEEEEcchhc-CCCc
Confidence 8899999877775544 6789999999999999999999999887766422 1111 122355778899975 7899
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC----CC
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI----PC 338 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~ 338 (422)
+|+++++ +++.+.+.... ..+.+.+++.++++.++|+...+ ++..++++++.+++.+.|+++ +.
T Consensus 264 iga~~~~--------~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~ 332 (408)
T PRK04612 264 IGAMLAG--------PKVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGV 332 (408)
T ss_pred eEEEEEC--------HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999986 35666665432 23456789999999999986432 244555666666666666553 22
Q ss_pred CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 339 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
+. . ...-|.++.+.+.... .....++... +.++|+.+.+.. .+.+|+.++ .+++++++++++|++++.
T Consensus 333 i~-~-vrg~Gl~~~i~~~~~~---~~~a~~i~~~-l~~~Gvlv~~~g----~~~lRl~Ppl~it~eeid~~l~~l~~~l~ 402 (408)
T PRK04612 333 FA-Q-VRGRGLMLGAVLAPAH---AGQAGAILDL-AAEHGLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALA 402 (408)
T ss_pred ee-e-eeccceEEEEEecCch---hhHHHHHHHH-HHHCCeEEeeCC----CCEEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence 22 1 2233666666664210 0023344444 567799997742 478999987 789999999999999999
Q ss_pred HhcccC
Q 014603 417 RHAKKQ 422 (422)
Q Consensus 417 ~~~~~~ 422 (422)
++.+|+
T Consensus 403 ~~~~~~ 408 (408)
T PRK04612 403 DYVAQR 408 (408)
T ss_pred HHhhcC
Confidence 887664
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=206.77 Aligned_cols=335 Identities=15% Similarity=0.117 Sum_probs=215.0
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHHH----HHHHHHhhcCCCCCCCCCE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPARR----AIADYLNRDLPYKLSPDDV 113 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~----~ia~~l~~~~~~~~~~~~i 113 (422)
....|+|..+. + ++++.+.+++...+.......++ .......+++ .+++++ +.+...|
T Consensus 24 ~~~~~~l~~~~-----n-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~------g~~~~~i 91 (416)
T PRK00011 24 QEEHIELIASE-----N-FVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELF------GAEYANV 91 (416)
T ss_pred HhcCeeeeccc-----C-cCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh------CCCceee
Confidence 36678888776 2 36789999987765321111111 1111233333 455555 3344456
Q ss_pred EEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH-----HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEE
Q 014603 114 YLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA-----RATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVAL 187 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i 187 (422)
+++ +|++++..++.+++++||+|+++.|+|.++.. .....|.+++.+++++ +++.+|++++++.+++ +++++
T Consensus 92 ~~~-sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~k~v 169 (416)
T PRK00011 92 QPH-SGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGLIDYDEVEKLALEHKPKLI 169 (416)
T ss_pred ecC-CchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCCcCHHHHHHHHHhcCCCEE
Confidence 555 45789999999999999999999999975421 1123356677777643 3467999999998864 68888
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH-LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
++++++++ .. .++++|.++|+++|+++|+|++|.. ..+.|.....+. .. .++++|+||++ +|+|.||
T Consensus 170 ~~~~~~~~--~~---~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~---di~~~S~~K~l--~g~~gg~ 237 (416)
T PRK00011 170 IAGASAYS--RP---IDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HA---DVVTTTTHKTL--RGPRGGL 237 (416)
T ss_pred EECCCcCC--Cc---cCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CC---cEEEecCCcCC--CCCCceE
Confidence 87765543 33 3588999999999999999999863 222222222222 12 27799999975 6788899
Q ss_pred EEeeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014603 267 LVTSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 344 (422)
+++++ +++.+++...... .+++....+.++..++......++++..++++++++.+.+.|++. ++.+...
T Consensus 238 i~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 309 (416)
T PRK00011 238 ILTND-------EELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSG 309 (416)
T ss_pred EEeCC-------HHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeec
Confidence 99863 4677777655432 122333334443333333223457888899999999999999987 6763211
Q ss_pred CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCC-C-----CCCCeEEEEe------ccChHHHHHHHHHHH
Q 014603 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT-V-----GLKDWLRITF------AVEPSALEDGLGRMK 412 (422)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~-----~~~~~iRis~------~~~~~~l~~~~~~l~ 412 (422)
...++++|+.++... .+..++.. .++++||.+..+.. + ..+..+|++. +.++++++.+++.|+
T Consensus 310 ~~~~~~~~i~~~~~~----~~~~~~~~-~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~ 384 (416)
T PRK00011 310 GTDNHLVLVDLRSKG----LTGKEAEA-ALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIA 384 (416)
T ss_pred CCCCeEEEEeCcccC----CCHHHHHH-HHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHH
Confidence 223478888875321 13445544 45778999974321 1 1245799965 246899999999999
Q ss_pred HHHHH
Q 014603 413 AFYDR 417 (422)
Q Consensus 413 ~~~~~ 417 (422)
+++..
T Consensus 385 ~~~~~ 389 (416)
T PRK00011 385 DVLDN 389 (416)
T ss_pred HHHhc
Confidence 88765
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=207.67 Aligned_cols=353 Identities=19% Similarity=0.147 Sum_probs=216.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|..+|||..|......+ ..+|++.+++.+++.+.....+.. ...+.+..+++.|.+..+ ....+.++|+++|++
T Consensus 30 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGse 105 (420)
T TIGR00700 30 VDGNRLIDFASGIAVLNIG-HSHPRVVDAVRTQVAEFTHTCFMV--TPYEGYVALAEKLNRIAP-GSGPKKSVFFNSGAE 105 (420)
T ss_pred CCCCEEEECccCHHhccCC-CCCHHHHHHHHHHHHhccCccccc--cCChHHHHHHHHHHHhCC-CCCCCEEEEeCCcHH
Confidence 3689999999887554333 357899999999997643222211 112233344554443221 112368999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCC---------CCcccCHHHH
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPA---------KGWEVDLDAV 176 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~---------~~~~~d~~~l 176 (422)
|++.+++... ....+|+....+||++...+... +. ++..++.... ..+.-+++.+
T Consensus 106 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (420)
T TIGR00700 106 AVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAA 185 (420)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHH
Confidence 9999987542 22367999999999875544422 10 1111221100 0000124456
Q ss_pred HHhhc----CCceEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEE
Q 014603 177 EALAD----ENTVALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250 (422)
Q Consensus 177 ~~~~~----~~~~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i 250 (422)
++.+. ++..+.+|..| +..+|..+ +.+.+++|.++|++||+++|+||+|.++.++|.. ..+...+..++ +
T Consensus 186 ~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~-~a~~~~~~~pD---i 261 (420)
T TIGR00700 186 RAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM-FACEHEGPEPD---L 261 (420)
T ss_pred HHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchh-HHHhhcCCCCC---E
Confidence 65542 34556667777 55677755 5556999999999999999999999998877642 22222332222 3
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHH
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADI 328 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~ 328 (422)
.++||.++ +|+|+||++++ +++++.+.... ..+.+.++++++++.++|+...+ ...+...+.-+..++.
T Consensus 262 ~~lsK~l~-~G~pig~v~~~--------~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~ 332 (420)
T TIGR00700 262 ITTAKSLA-DGLPLSGVTGR--------AEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDR 332 (420)
T ss_pred EEeecccc-CCcceEEEEec--------HHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45899976 89999999986 46777665332 34557789999999888875332 2223222222333333
Q ss_pred HHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHH
Q 014603 329 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSAL 404 (422)
Q Consensus 329 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l 404 (422)
+.+..+.+|.+. ...+. |.++++.+........ .....+... +.++||.+.|+..|+ +++|++++ .++++|
T Consensus 333 L~~l~~~~~~~~-~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~Gv~i~p~~~f~--~~lRl~p~l~~~~~~l 407 (420)
T TIGR00700 333 LTTLKAVDPRIG-DVRGL-GAMIAVELVDPGTTEPDAGLAERIATA-AHAAGLLLLTCGMFG--NIIRFLPPLTIGDELL 407 (420)
T ss_pred HHHHHhhCCCEE-Eeecc-ceEEEEEEecCCCCCccHHHHHHHHHH-HHHCCeEEeccCCCC--CEEEEECCCCcCHHHH
Confidence 333333444443 22344 7788887732100000 012233333 357799999987664 79999986 689999
Q ss_pred HHHHHHHHHHHH
Q 014603 405 EDGLGRMKAFYD 416 (422)
Q Consensus 405 ~~~~~~l~~~~~ 416 (422)
++++++|.+++.
T Consensus 408 ~~~~~~l~~~l~ 419 (420)
T TIGR00700 408 SEGLDILCAILA 419 (420)
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=203.21 Aligned_cols=215 Identities=20% Similarity=0.236 Sum_probs=162.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccc----hHHHHhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPY----YEARATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~ 163 (422)
...+++++++++.+ . +..+++++|++++..++.+++++||+|+++.|.|.+ +...+...|..++.++.
T Consensus 61 ~~~~Le~~lA~l~g------~--~~~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 61 TRDLLGEALAELEG------G--AGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred HHHHHHHHHHHHhC------C--CceEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 35678888888762 2 234566667899999999999999999999999986 34445556767666643
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.|++.+++.++++++++++++|+||||.+ .++++|+++|+++|+++|+|++|.... ...++ .++.
T Consensus 133 -------~d~~~l~~~i~~~tklV~l~~P~NPtG~v---~dl~~I~~la~~~gi~vIvD~a~a~~~----~~~pl-~~ga 197 (405)
T PRK08776 133 -------TDPRSLADALAQSPKLVLIETPSNPLLRI---TDLRFVIEAAHKVGALTVVDNTFLSPA----LQKPL-EFGA 197 (405)
T ss_pred -------CCHHHHHHhcCcCCeEEEEECCCCCCCcc---CCHHHHHHHHHHcCCEEEEECCCcccc----cCCcc-cccC
Confidence 37889999888889999999999999998 568999999999999999999997521 12222 2333
Q ss_pred CCCeEEEecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDI 321 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 321 (422)
+ +++.|.+|.++++ ++..|++++++ +++.+++...... ...++++.++++...++. ++.+.++
T Consensus 198 D---ivv~S~tK~l~g~~~~~~G~vv~~~-------~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~t-----l~~r~~~ 262 (405)
T PRK08776 198 D---LVLHSTTKYINGHSDVVGGAVVARD-------AELHQQLVWWANALGLTGSPFDAFLTLRGLRT-----LDARLRV 262 (405)
T ss_pred C---EEEecCceeecCCCCceEEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCc-----HHHHHHH
Confidence 3 8899999998766 47788888754 4566666554432 234667777776655543 7888889
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q 014603 322 LRETADICCDRLKEIPCIT 340 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~ 340 (422)
..++...+.+.|+++|.+.
T Consensus 263 ~~~na~~la~~L~~~p~v~ 281 (405)
T PRK08776 263 HQENADAIAALLDGHAAVN 281 (405)
T ss_pred HHHHHHHHHHHHHcCCCee
Confidence 9999999999999887654
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=206.27 Aligned_cols=355 Identities=15% Similarity=0.144 Sum_probs=216.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++...... .......+.+..+++.|....+.+ ..+.++++++|++
T Consensus 51 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~--~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGse 126 (451)
T PRK06918 51 VDGNQYIDFAGAIGTINVG-HSHPKVKEALHKQVDQYIHT--GFNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAE 126 (451)
T ss_pred CCCCEEEEcCCchhhcCCC-CCCHHHHHHHHHHHHhccCc--cccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHH
Confidence 4688999999887554333 45789999999999763221 111112344455555555433211 1258999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCC--------------eEEEeeccCC--CCcccC--------HHH
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHSHL--------------EVRHFDLLPA--KGWEVD--------LDA 175 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~--~~~~~d--------~~~ 175 (422)
|++.+++... ....+|+....+||++...+..... .+..+|.... ...+.. .+.
T Consensus 127 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (451)
T PRK06918 127 AVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEE 206 (451)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHH
Confidence 9999988642 2236799999999988654443211 0111221100 000110 122
Q ss_pred HHHhh----cCCceEEEEeCCCCC-ccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 176 VEALA----DENTVALVIINPGNP-CGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 176 l~~~~----~~~~~~i~i~~p~np-tG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
+++.+ ..+..+.+|..|... .|. .++.+.+++|.++|++||+++|+||+|.++.++|.. .++..++..++
T Consensus 207 ~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~-~a~~~~~v~pD--- 282 (451)
T PRK06918 207 FKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY-FAIEHFDVVPD--- 282 (451)
T ss_pred HHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCce-ehhHhcCCCCC---
Confidence 33332 235677788888544 465 445666999999999999999999999998877743 23444442222
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 328 (422)
+.|+||.++ +|+|+||++++ +++++.+.... ..+.+.+++.+.++.++|+...+..+.+. +++..+.
T Consensus 283 i~t~sK~l~-~G~pig~v~~~--------~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~---~~~~g~~ 350 (451)
T PRK06918 283 LITVSKSLG-AGVPISGVIGR--------KEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDR---AIELGKV 350 (451)
T ss_pred EEeeehhhc-CCCccEEEEEc--------HHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHH---HHHHHHH
Confidence 447899975 89999999986 46776664333 34557888999998888875433222222 2233333
Q ss_pred HHHHhh----cCCCCCCCCCCCCceEEEEecCccc--ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cC
Q 014603 329 CCDRLK----EIPCITCPKKPEGSMFVMVKLNYSL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VE 400 (422)
Q Consensus 329 l~~~L~----~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~ 400 (422)
+.+.|+ +.+.+. ...+.++++.|....... .+.......+.. .+.++||.+.|+..| .+++|++++ .+
T Consensus 351 l~~~l~~l~~~~~~~~-~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~Gvlv~~~~~~--~~~lrl~p~l~~t 426 (451)
T PRK06918 351 VMNRFEEMKNKYNCIG-DVRGLGAMCAFELVQDRKTKEPDKTLTANICK-EANKRGLLLLSAGTY--GNVIRVLMPLVIT 426 (451)
T ss_pred HHHHHHHHHhhCCCce-eeccceeEEEEEEccCCCcCCCcHHHHHHHHH-HHHHCCeEEeecCCC--CCEEEEECCCccC
Confidence 333333 343333 224555555554331110 000001223333 346679999997655 378999996 68
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 014603 401 PSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~~~ 420 (422)
+++|++++++|+++++++..
T Consensus 427 ~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 427 DEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987643
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=203.31 Aligned_cols=220 Identities=21% Similarity=0.231 Sum_probs=161.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~ 162 (422)
+...++++.+++++ ..+.+++++||++|+..++.+++++||+|+++.+.|.+.. ..+...|++++.++
T Consensus 61 p~~~~le~~la~l~--------g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd 132 (390)
T PRK08133 61 PTVTMFQERLAALE--------GAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVD 132 (390)
T ss_pred hHHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEEC
Confidence 34678899999988 2356889999999999999999999999999999997643 34556788888776
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+ |++.+++.++++++++++++|+||+|.+. ++++|+++|+++|+++|+|++|...... .++ ..+
T Consensus 133 ~~-------d~~~l~~~i~~~tklV~ie~p~NptG~v~---dl~~I~~la~~~gi~livD~t~~~~~~~----~pl-~~g 197 (390)
T PRK08133 133 LT-------DLDAWRAAVRPNTKLFFLETPSNPLTELA---DIAALAEIAHAAGALLVVDNCFCTPALQ----QPL-KLG 197 (390)
T ss_pred CC-------CHHHHHHhcCcCCeEEEEECCCCCCCCcC---CHHHHHHHHHHcCCEEEEECCCcccccC----Cch-hhC
Confidence 42 77899999988999999999999999996 5788899999999999999998653221 121 223
Q ss_pred CCCCeEEEecCccccCCCCceeEE-EEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGW-LVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
.+ +++.|+||.++++|.++|+ ++++ +++++++...... ....++..++.+...++ .+..+.+
T Consensus 198 ~D---ivv~S~sK~~~g~g~~~GG~vv~~--------~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~-----tl~~R~~ 261 (390)
T PRK08133 198 AD---VVIHSATKYLDGQGRVLGGAVVGS--------KELMEEVFGFLRTAGPTLSPFNAWVFLKGLE-----TLSLRME 261 (390)
T ss_pred Cc---EEEeecceeecCCcceEeEEEEcC--------HHHHHHHHHHHHHhCCCCCHHHHHHHHcccc-----hHHHHHH
Confidence 22 8899999999999999854 5543 3455555544332 22444444444433333 3566667
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..+++..+.+.|+++|++..+.+|
T Consensus 262 ~~~~~a~~la~~L~~~p~v~~v~yp 286 (390)
T PRK08133 262 AHSANALALAEWLEAHPGVERVFYP 286 (390)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECC
Confidence 7778888999999988776544343
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=203.81 Aligned_cols=288 Identities=16% Similarity=0.133 Sum_probs=195.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCe
Q 014603 82 CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLE 157 (422)
Q Consensus 82 ~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~ 157 (422)
+|+. +...+|++.++++.+ .+..+++++|++|+..++.+++++||+|+++.+.|.+..... ...|++
T Consensus 57 r~~~-pt~~~Le~~lA~l~G--------~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~ 127 (386)
T PRK06767 57 RLGN-PTVKLFEERMAVLEG--------GEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMIT 127 (386)
T ss_pred CCCC-cchHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeE
Confidence 4443 457899999999983 235666677788999999999999999999999887654433 334554
Q ss_pred EEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC
Q 014603 158 VRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 158 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
+..++. .|++.+++.++++++++++++|+||+|.+++ +++|.++|+++|+++|+|++|+.... + .+
T Consensus 128 ~~~~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~-~---~p 193 (386)
T PRK06767 128 HSFCDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYL-Q---RP 193 (386)
T ss_pred EEEeCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCccccc-C---Cc
Confidence 443322 3788999988889999999999999999964 78888888999999999999864221 1 12
Q ss_pred ccccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHh-hhh-hccCcchHHHHHHHHHHhhchHHH
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKS-FLN-ISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
+ ..+.+ +++.|++|.++++|.++ |++++++ +.+.++.. ... ..+..+++.++++...|+.
T Consensus 194 l-~~g~D---iv~~S~sK~l~g~g~~~gG~v~~~~--------~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~t----- 256 (386)
T PRK06767 194 L-ELGCD---AVVHSATKYIGGHGDVVAGVTICKT--------RALAEKIRPMRKDIGGIMAPFDAWLLLRGLKT----- 256 (386)
T ss_pred h-hcCCc---EEEecCcceecCCCCceeEEEEeCh--------HHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-----
Confidence 2 12222 78889999998888885 8888753 44544432 222 2234455656655555543
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKPE----------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
+..+.++.+++.+.+.+.|+++|++..+..|. .|..+.+.++.. ..+..+++..+ +..++.+.-|
T Consensus 257 l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~----~~~~~~f~~~l-~~~~~~~s~G 331 (386)
T PRK06767 257 LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGG----KEETQAFINDL-HFITIAVSLG 331 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCC----HHHHHHHHHhC-CccEEecCCC
Confidence 45567788999999999999999987544442 233455556421 01234555554 4455555444
Q ss_pred CCCC----------------------C-CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 385 ITVG----------------------L-KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 385 ~~~~----------------------~-~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
.... . ++.||+|++. |+.+.++..|.+++.
T Consensus 332 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al~ 384 (386)
T PRK06767 332 DTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL--ESWEDIVSDLEQALK 384 (386)
T ss_pred CcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Confidence 3211 0 3679999997 357777777777775
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=203.48 Aligned_cols=326 Identities=13% Similarity=0.088 Sum_probs=210.4
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
-+.+||-+.--+.. ..-.++++++++|.+..++ |. +.+++++.+.+++.+.+| .+++++++|+|+|+
T Consensus 7 ~~~~ina~g~~t~~-g~s~~~~~v~~a~~~~~~~-----~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al 73 (363)
T TIGR01437 7 LKKVINASGKMTIL-GVSTVSDEVADAQKRGAQN-----YF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGI 73 (363)
T ss_pred CceEEECCcEeecC-CCCCCCHHHHHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHH
Confidence 34556654333221 1124789999999998643 22 234566666666555443 35789999999999
Q ss_pred HHHHHHhcCCCC---------------EEEecCCCccch----HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCc
Q 014603 124 EVILTVLARPGA---------------NILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT 184 (422)
Q Consensus 124 ~~~~~~l~~~gd---------------~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 184 (422)
.+++.+++++|| +|+++.|.|..| .......|+.++.++.+ +.+|++.+++++++++
T Consensus 74 ~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~~t 149 (363)
T TIGR01437 74 AQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITEKT 149 (363)
T ss_pred HHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcChhc
Confidence 999999999988 999999777655 45667789898888752 3589999999999999
Q ss_pred eEEE-EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 185 VALV-IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 185 ~~i~-i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++++ +++|+||+|.+.+ +++|.++|+++|+++|+|++|+.- . ..+..++.+ ++++|++|++ .|++
T Consensus 150 ~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~~---~---~~~~~~g~D---~~~~S~~K~l--~gp~ 215 (363)
T TIGR01437 150 AAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEED---L---QKYYRLGAD---LVIYSGAKAI--EGPT 215 (363)
T ss_pred eEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCCc---h---HHHHHcCCC---EEEEeCCccc--CCCc
Confidence 8776 5678999999865 567899999999999999999721 1 111223332 7889999975 5777
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhhhhhcc---CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSFLNISS---DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 340 (422)
.|+++.+ +++++.++....... ........++.++++... ....+..+...++++.+.+.|+++|++.
T Consensus 216 ~G~l~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~-~~~~~~~~~~~~~~~~l~~~L~~i~g~~ 286 (363)
T TIGR01437 216 SGLVLGK--------KKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYL-STGKESGAEMVAKLTPFIEALNTLKGVS 286 (363)
T ss_pred eEEEEEc--------HHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHH-ccCcccHHHHHHHHHHHHHHHhcCCCeE
Confidence 8998874 346665543221100 111122233333443321 1112233344456778999999998887
Q ss_pred CCCC-CCCce---EEEEecCcccccCCCCHHHHHHHHHHhcC--eEEecCCCCCCCCeEEEEec-cChHHHHHHHHHHHH
Q 014603 341 CPKK-PEGSM---FVMVKLNYSLLEGINSDMEFALKLAKEES--VIVLPGITVGLKDWLRITFA-VEPSALEDGLGRMKA 413 (422)
Q Consensus 341 ~~~~-~~~g~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--i~v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~ 413 (422)
+... +..+. ..-+.++... .+ .+..++...| ++++ |.+++ .+..++.+|+++. .+++|++.++++|.+
T Consensus 287 ~~~~~~~~~~~~~~~~v~~~~~~-~g-~~~~~l~~~L-~~~~~~I~~r~--~~~~~~~~~l~~~~~~~~e~~~~~~~l~~ 361 (363)
T TIGR01437 287 ASIVQDEAGRDIARAEIRFDESE-LG-MTAADVVQAL-RQGEPAIYTRG--YKANEGIIEIDPRSVTGGQLDIIVERIRE 361 (363)
T ss_pred EEEecCCCCCcCceEEEEEeccC-CC-CCHHHHHHHH-hcCCCCEEEee--eeecCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 4311 11111 1112232110 01 2567777766 5556 66655 3555788999997 678999999999987
Q ss_pred H
Q 014603 414 F 414 (422)
Q Consensus 414 ~ 414 (422)
+
T Consensus 362 ~ 362 (363)
T TIGR01437 362 I 362 (363)
T ss_pred h
Confidence 5
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=201.43 Aligned_cols=289 Identities=20% Similarity=0.266 Sum_probs=194.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCe
Q 014603 82 CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLE 157 (422)
Q Consensus 82 ~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~ 157 (422)
+|+. +...++++.+|++++ .+ ..+++++|+.++..++.+++++||+|+++.+.|.++... +...|++
T Consensus 61 r~~~-p~~~~Le~~lA~l~G------~~--~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 131 (398)
T PRK07504 61 RYSN-PTVDMFEKRMCALEG------AE--DARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIE 131 (398)
T ss_pred cCCC-chHHHHHHHHHHHhC------CC--eeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeE
Confidence 4433 346899999999983 23 345677889999888888889999999999999875433 3456777
Q ss_pred EEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC
Q 014603 158 VRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 158 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
++.++ ..|++.+++.++++++++++++|+||+|.+++ +++|.++|+++|+++|+|++|+...+. .+
T Consensus 132 v~~vd-------~~d~e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~----~~ 197 (398)
T PRK07504 132 STLVD-------GLDLDNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQ----KP 197 (398)
T ss_pred EEEEC-------CCCHHHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccC----Cc
Confidence 77664 26899999999889999999999999999965 788888899999999999999753321 12
Q ss_pred ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH-HHHHhhh-hhccCcchHHHHHHHHHHhhchHHHH
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV-DSIKSFL-NISSDPATFIQGAVPQILEKTEEEFF 315 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~ 315 (422)
+ .++. .+++.|++|.++++|.++|++++.+ ++++ +.++... ......++..++.+...|+. +
T Consensus 198 ~-~~ga---Divv~S~sK~l~g~g~~~GG~vv~~-------~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t-----l 261 (398)
T PRK07504 198 L-ELGA---HIVVYSATKHIDGQGRCLGGVVLSD-------KAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET-----L 261 (398)
T ss_pred h-hhCC---CEEEeeccccccCCccceEEEEEeC-------cHHHHHHHHHHHHHhCCCCCHHHHHHHHhccch-----H
Confidence 1 2233 3889999999999999987544432 2333 3344322 22335566666666666654 5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCe
Q 014603 316 SKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 379 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 379 (422)
..+.++..++.+.+.+.|+++|++.-+.+|. .|..+.+.+.. ..+...+++++-.+
T Consensus 262 ~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~--------~~~~~~~~~~~l~~ 333 (398)
T PRK07504 262 PVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG--------GKEAAFRFLNALKI 333 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC--------CHHHHHHHHHhCCc
Confidence 6677777788899999999887764233331 13355566642 12222333333333
Q ss_pred EEe---cCCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 380 IVL---PGITV----------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 380 ~v~---~g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.-. -|... +. ++.||+|++.+ +.+.++..|.+++++.+
T Consensus 334 ~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE--~~~dl~~dl~~al~~~~ 397 (398)
T PRK07504 334 VRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLE--DTDDLIEDLAAALKKVR 397 (398)
T ss_pred ceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHhhh
Confidence 221 11100 00 46899999973 56777778888876543
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-24 Score=201.52 Aligned_cols=350 Identities=14% Similarity=0.153 Sum_probs=219.5
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++.......+.. ...+.+..+++.+.+..+ ....+.++|+++|++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~~~f~~sGse 112 (421)
T PRK09792 37 VEGNEYIDFAAGIAVLNTG-HRHPDLVAAVEQQLQQFTHTAYQI--VPYESYVTLAEKINALAP-VSGQAKTAFFTTGAE 112 (421)
T ss_pred CCCCEEEEccCchhhhcCC-CCCHHHHHHHHHHHHhccCcccCc--cCCHHHHHHHHHHHHhCC-CCCCceEEEeCChHH
Confidence 4689999998886553333 458999999999987632212211 122344455555544222 112358999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCCCCccc----CHHHHHHhhc
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPAKGWEV----DLDAVEALAD 181 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~----d~~~l~~~~~ 181 (422)
|++.+++... ....+|+....+||++...+... +. .+..+|..... .+. +++.+++.+.
T Consensus 113 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~ 191 (421)
T PRK09792 113 AVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFK 191 (421)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHH
Confidence 9999988653 12368999999999875433322 11 11222221110 011 2466777664
Q ss_pred ----CCceEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 182 ----ENTVALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 182 ----~~~~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
++..+.++..| ++++|..+ |.+.+++|.++|++||+++|+||++.++.++|.. ..+..++..++ +.+++|
T Consensus 192 ~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~~~~pD---i~t~gK 267 (421)
T PRK09792 192 SDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHYADKPD---LMTMAK 267 (421)
T ss_pred hccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhcCCCCc---EEEeeh
Confidence 23445556666 78999765 8999999999999999999999999998887753 23334432222 567899
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCDRL 333 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L 333 (422)
.+ .+|+|+||++++ +++++.+.... ..+...+++.++++.+.++...+ ..+++.+ .+.++.+...+.|
T Consensus 268 ~l-~~G~pigav~~~--------~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~-~~g~~l~~~l~~l 337 (421)
T PRK09792 268 SL-AGGMPLSGVVGN--------ANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERAN-QLGQRLKNTLIDA 337 (421)
T ss_pred hh-cCCCceEEEEEc--------HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHH
Confidence 96 588999999986 45666654332 23557888999988888775432 2333333 2222222222223
Q ss_pred -hcCCCCCCCCCCCC-ceEEEEecCccccc--CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHH
Q 014603 334 -KEIPCITCPKKPEG-SMFVMVKLNYSLLE--GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDG 407 (422)
Q Consensus 334 -~~~~~~~~~~~~~~-g~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~ 407 (422)
+++|.+. .+.+ |.++|+.++..... .......+...+ .++||.+.+... ..+.+|+.++ .++++++++
T Consensus 338 ~~~~p~v~---~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~g~--~~~~irl~P~l~i~~~ei~~~ 411 (421)
T PRK09792 338 KESVPAIA---AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRA-LAQGLLLLTCGA--YGNVIRFLYPLTIPDAQFDAA 411 (421)
T ss_pred HHhCCCcc---eecccceEEEEEecCCccCCcchHHHHHHHHHH-HHCCcEEeecCC--CCCEEEEeCCCcCCHHHHHHH
Confidence 2355332 4555 89999998642100 000123444444 567999964221 1588999987 689999999
Q ss_pred HHHHHHHHH
Q 014603 408 LGRMKAFYD 416 (422)
Q Consensus 408 ~~~l~~~~~ 416 (422)
+++|.++++
T Consensus 412 ~~~l~~~l~ 420 (421)
T PRK09792 412 MKILQDALS 420 (421)
T ss_pred HHHHHHHHh
Confidence 999999875
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=201.05 Aligned_cols=227 Identities=19% Similarity=0.196 Sum_probs=167.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCC
Q 014603 80 FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSH 155 (422)
Q Consensus 80 ~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g 155 (422)
+.+|+. ....+++++++++.+ .+++++++|+++|+..++.+++++||+|+++.|+|.+....+ ...+
T Consensus 45 Y~R~~~-p~~~~le~~lA~l~g--------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 45 YSRSGN-PTRDLLQQALAELEG--------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred ccCCCC-chHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 445544 346889999999872 468999999999999999999999999999999998644332 2223
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF 235 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~ 235 (422)
.++..++ ..|++.+++.++++++++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 116 ~~v~~~d-------~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~---- 181 (382)
T TIGR02080 116 FRVLFVD-------QGDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ---- 181 (382)
T ss_pred eEEEEEC-------CCCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 4444332 13789999999888999999999999999975 677888889999999999999753221
Q ss_pred CCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHH
Q 014603 236 VPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 236 ~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
.++ .++.+ ++++|+||.+++ ++++.|++++.+ +++.+++...... ....+++.++.+...++.
T Consensus 182 ~pl-~~gaD---ivv~S~sK~l~G~~~~~~G~i~~~~-------~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~t---- 246 (382)
T TIGR02080 182 NPL-ALGAD---LVLHSCTKYLNGHSDVIAGAVIAKD-------PQVAEELAWWANNLGVTGGAFDSYLTLRGLRT---- 246 (382)
T ss_pred Cch-hhCCC---EEEeecceeccCCCCceeEEEEeCC-------HHHHHHHHHHHHccCCCCCHHHHHHHHcccch----
Confidence 122 22332 888999999864 678999988754 4577777655543 345666776666555543
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..+.++..++...+.+.|+.+|.+..+.+|
T Consensus 247 -l~~R~~~~~~na~~~a~~L~~~p~v~~V~yP 277 (382)
T TIGR02080 247 -LVARMRLQQRNAQAIVEYLQTQPLVKKIYYP 277 (382)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence 5556777888899999999988765533343
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=201.12 Aligned_cols=220 Identities=15% Similarity=0.175 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~ 162 (422)
+...++++.++++++ .+..+++++|++|+..++.+++++||+|+++.|+|.+.. ..+...|++++.++
T Consensus 64 p~~~~le~~lA~l~g--------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd 135 (398)
T PRK08249 64 PTVQAFEEKVRILEG--------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCE 135 (398)
T ss_pred hHHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcC
Confidence 456899999999983 345677788899999999999999999999999998653 33456677776554
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||+|.+++ +++|.++|+++|+++|+|++|+..... .++ ..+
T Consensus 136 ~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~----~~l-~~~ 200 (398)
T PRK08249 136 T-------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ----NPL-ALG 200 (398)
T ss_pred C-------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC----Cch-hhC
Confidence 2 5889999999889999999999999999975 777888899999999999999853321 122 223
Q ss_pred CCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
.+ +++.|+||.++++|.++ |+++++ +++.+++...... ....++..++.+...++. +..+.+
T Consensus 201 ~D---ivv~S~sK~l~g~~~~~gG~vv~~--------~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-----L~~R~~ 264 (398)
T PRK08249 201 AD---LVIHSATKFLSGHADALGGVVCGS--------KELMEQVYHYREINGATMDPMSAYLILRGMKT-----LKLRVR 264 (398)
T ss_pred CC---EEeccCceecCCCCCceEEEEECC--------HHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-----HHHHHH
Confidence 33 78899999998878776 555543 4677777666543 335566666666665554 566667
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..++++.+.+.|+++|.+.-+.+|
T Consensus 265 ~~~~na~~la~~L~~~p~v~~V~yP 289 (398)
T PRK08249 265 QQQESAMALAKYLQTHPKVEAVYYP 289 (398)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECC
Confidence 7788889999999987765433333
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=199.61 Aligned_cols=292 Identities=19% Similarity=0.218 Sum_probs=202.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCC
Q 014603 80 FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSH 155 (422)
Q Consensus 80 ~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g 155 (422)
+.+|+. ....++++++|++.+ .+.+++++|+++++..++.+++++||+|++++|+|++....+ ...+
T Consensus 46 Y~R~~~-pt~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g 116 (386)
T PRK08045 46 YSRRGN-PTRDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_pred eeCCCC-ccHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence 334544 346899999999873 246999999999999999999999999999999998643222 2233
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF 235 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~ 235 (422)
.++..++ ..|++.+++.++++++++++++|+||||.+++ +++|.++|+++|+++|+|++|..... .
T Consensus 117 i~v~~vd-------~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~----~ 182 (386)
T PRK08045 117 YRVLFVD-------QGDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPAL----Q 182 (386)
T ss_pred eEEEEeC-------CCCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc----C
Confidence 4554432 15889999999889999999999999999975 67788888899999999999976322 1
Q ss_pred CCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHH
Q 014603 236 VPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 236 ~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
.++ ..+.+ +++.|++|.+++ ++.+.|++++++ +++.+++..... .....+++.++.+...|+.
T Consensus 183 ~pl-~~gaD---ivv~S~tK~l~G~~d~~~G~vi~~~-------~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t---- 247 (386)
T PRK08045 183 NPL-ALGAD---LVLHSCTKYLNGHSDVVAGVVIAKD-------PDVVTELAWWANNIGVTGGAFDSYLLLRGLRT---- 247 (386)
T ss_pred Cch-hhCCC---EEEeecceeccCCCCceeEEEEeCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc----
Confidence 222 22333 889999999864 567899988754 456666654443 3446788888888888875
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhc
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEE 377 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (422)
+..+.++..+++..+.+.|+++|.+..+.+|. .|-.+.+.++. +.+.+.+++++-
T Consensus 248 -l~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~--------~~~~~~~f~~~l 318 (386)
T PRK08045 248 -LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG--------DEQTLRRFLGGL 318 (386)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC--------cHHHHHHHHHhc
Confidence 78888899999999999999887764333331 13344555642 112222333332
Q ss_pred CeEE-e--cCCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 378 SVIV-L--PGITV----------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 378 gi~v-~--~g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.+.. . -|... +. ++.||+|++. |+.+.+++.|.++++...|
T Consensus 319 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~~~ 385 (386)
T PRK08045 319 SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAANK 385 (386)
T ss_pred cceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHHHHHhhc
Confidence 3321 1 11110 01 4689999997 4577777888888876543
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=201.15 Aligned_cols=226 Identities=17% Similarity=0.163 Sum_probs=170.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccc----hHHHHhhCCC
Q 014603 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPY----YEARATHSHL 156 (422)
Q Consensus 81 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~----~~~~~~~~g~ 156 (422)
.+|+. +...++++.++++.+ .++.+++++|+.|+..++.+++++||+|+++...|.+ +...++..|+
T Consensus 65 ~r~~~-p~~~~le~~lA~l~g--------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~ 135 (403)
T PRK07810 65 SRYGN-PTVSMFEERLRLIEG--------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV 135 (403)
T ss_pred eCCCC-chHHHHHHHHHHHhC--------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence 34544 347899999999982 3478899999999999999999999999998866633 3455667888
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
+++.++. .|++.+++.++++++++++++|+||+|.+. ++++|+++|+++|+++|+|++|+...+. .
T Consensus 136 ~v~~vd~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~---dl~~I~~la~~~g~~vivD~a~a~~~~~----~ 201 (403)
T PRK07810 136 ETVFVDG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLV---DIAAVSELAHAAGAKVVLDNVFATPLLQ----R 201 (403)
T ss_pred EEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCCccccC----C
Confidence 8888753 388999999988999999999999999985 6888899999999999999999753321 1
Q ss_pred CccccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHH
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
++ ..+.| +++.|++|.+++.|.++ |++++++ +.+...++... ......++..++.+...|+.
T Consensus 202 ~~-~~gaD---ivv~S~tK~l~g~g~~~gG~v~~~~-------~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t----- 265 (403)
T PRK07810 202 GL-PLGAD---VVVYSGTKHIDGQGRVLGGAILGDR-------EYIDGPVQKLMRHTGPALSAFNAWVLLKGLET----- 265 (403)
T ss_pred hh-hcCCc---EEEccCCceecCCcCceeEEEEeCh-------HHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-----
Confidence 22 22333 88999999998888887 7777653 12223344332 23346677888887777765
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..+.++..++...+.+.|+++|.+..+.+|
T Consensus 266 l~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP 296 (403)
T PRK07810 266 LALRVRHSNASALRIAEFLEGHPAVRWVRYP 296 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence 6777788888888899999998877644444
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=196.08 Aligned_cols=325 Identities=13% Similarity=0.095 Sum_probs=221.7
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
+.+++|++++ |.++..+|+++++..+.++..... -++....+.++++.+|+|+ ..+..+++++
T Consensus 102 r~~l~FsSnd---YLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--------g~e~all~sS 170 (476)
T PLN02955 102 KKLLLFSGND---YLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--------KKEDCLVCPT 170 (476)
T ss_pred ceEEEeeccC---ccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--------CCCcEEEECC
Confidence 4689999998 778889999999999988763221 1112223578999999999 4567888888
Q ss_pred HHHHHHHHHHHh--------------cCCCCEEEecCCCccchHHHHhhC----CCeEEEeeccCCCCcccCHHHHHHhh
Q 014603 119 CTQAIEVILTVL--------------ARPGANILLPRPGFPYYEARATHS----HLEVRHFDLLPAKGWEVDLDAVEALA 180 (422)
Q Consensus 119 ~~~a~~~~~~~l--------------~~~gd~Vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~~ 180 (422)
|..|+..++.++ ..++|.|++...+|.+....++.. +.+++.++. -|++.|++.+
T Consensus 171 Gy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L 243 (476)
T PLN02955 171 GFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLL 243 (476)
T ss_pred hHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHH
Confidence 898988888876 245678889999999888888766 456665553 2778888776
Q ss_pred cC--CceEEEEeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccc
Q 014603 181 DE--NTVALVIINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKR 256 (422)
Q Consensus 181 ~~--~~~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~ 256 (422)
+. ....++++.+ .++.|.+.| +++|.++|++||+++|+||+|+.+.++..+......++. .+..++++||+|.
T Consensus 244 ~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA 320 (476)
T PLN02955 244 SSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKA 320 (476)
T ss_pred HhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccc
Confidence 43 2234555665 788999865 777788888999999999999976664322222223322 2456999999999
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh--hccC-cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN--ISSD-PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
+|..| |+++++ +++++.++.... .+++ .++....++.++++.... -...++++.++.+++++.
T Consensus 321 ~G~~G---Gfi~gs--------~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~--~~~~r~~L~~n~~~fr~~- 386 (476)
T PLN02955 321 AGCHG---GFIACS--------KKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARK--EKWRRKAIWERVKEFKAL- 386 (476)
T ss_pred hhccC---ceeecH--------HHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHh-
Confidence 87777 999886 357777765432 1223 333444455555554221 123567777888777763
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC---CeEEEEec--cChHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK---DWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~iRis~~--~~~~~l~~~~ 408 (422)
. ++. . + ..++.+.+.... ...++..+| .+.||.+.+..++..+ ..+||+++ ++++||++++
T Consensus 387 --~-G~~-~--~--sPI~pI~ig~~~-----~a~~~~~~L-~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv 452 (476)
T PLN02955 387 --S-GVD-I--S--SPIISLVVGNQE-----KALKASRYL-LKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLI 452 (476)
T ss_pred --c-CCC-C--C--CCEEEEEeCCHH-----HHHHHHHHH-HHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHH
Confidence 2 444 2 1 334444444321 244555655 5669999988777653 46999997 8999999999
Q ss_pred HHHHHHHHHh
Q 014603 409 GRMKAFYDRH 418 (422)
Q Consensus 409 ~~l~~~~~~~ 418 (422)
+.|.++.+..
T Consensus 453 ~~L~~~~~~~ 462 (476)
T PLN02955 453 TALSSCLDFD 462 (476)
T ss_pred HHHHHHHhhh
Confidence 9999876543
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=199.96 Aligned_cols=282 Identities=17% Similarity=0.168 Sum_probs=199.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEe
Q 014603 86 TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHF 161 (422)
Q Consensus 86 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~ 161 (422)
.+...++++.++++.+ .+..+++++|++|+..++.+++++||+|+++.++|++... .+...|.++..+
T Consensus 39 ~p~~~~le~~la~l~g--------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 110 (369)
T cd00614 39 NPTVDALEKKLAALEG--------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFV 110 (369)
T ss_pred ChhHHHHHHHHHHHHC--------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEe
Confidence 4557899999999873 3567888899999999999999999999999999987643 344667777776
Q ss_pred eccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 162 DLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
+.+ |++.+++.++++++++++.+|+||+|.+. ++++|.++|+++|+++|+|++|+...+ ..++ .+
T Consensus 111 ~~~-------d~~~l~~~i~~~~~~v~~e~~~np~g~~~---dl~~i~~la~~~g~~livD~t~~~~~~----~~~~-~~ 175 (369)
T cd00614 111 DPD-------DPEALEAAIKPETKLVYVESPTNPTLKVV---DIEAIAELAHEHGALLVVDNTFATPYL----QRPL-EL 175 (369)
T ss_pred CCC-------CHHHHHHhcCCCCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCcchhc----CChh-hh
Confidence 532 57889998888899999999999999995 478889999999999999999875332 1111 22
Q ss_pred CCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
+. .+++.|++|.++++| .+.|++++++ +++.+++..... .....++..++++...|+. +..+.
T Consensus 176 g~---Divv~S~tK~l~g~~~~~gG~v~~~~-------~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-----l~~r~ 240 (369)
T cd00614 176 GA---DIVVHSATKYIGGHSDVIAGVVVGSG-------EALIQRLRFLRLALGTILSPFDAWLLLRGLKT-----LPLRM 240 (369)
T ss_pred CC---cEEEeccceeccCCCCceEEEEEeCc-------HHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-----HHHHH
Confidence 33 388999999988766 7889999853 257777766543 2335566666666556653 45567
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCC----------------CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEE-e
Q 014603 320 DILRETADICCDRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV-L 382 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v-~ 382 (422)
++..++.+.+.+.|+++|.+..+..| ..|..+.+.++. +.+.+..+++...+.. .
T Consensus 241 ~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~--------~~~~~~~f~~~l~~~~~~ 312 (369)
T cd00614 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG--------GLEAAKKFLNALKLFSLA 312 (369)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC--------CHHHHHHHHHcCCcceEc
Confidence 77888999999999998776534344 134555566642 1222334444444431 1
Q ss_pred c--CC------------CC----------CC-CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 383 P--GI------------TV----------GL-KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 383 ~--g~------------~~----------~~-~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
+ |. .. +. ++.+|+|++. |+.+.++..|++++
T Consensus 313 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl--E~~~dl~~dl~~al 368 (369)
T cd00614 313 VSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI--EDVEDLIADLEQAL 368 (369)
T ss_pred ccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 0 11 10 11 3689999997 46777777777765
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=195.92 Aligned_cols=244 Identities=16% Similarity=0.134 Sum_probs=178.1
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
++.++++.++...... ....|.. ......||++++++.+ .+++++++|+++|+..++.+++++||+|+
T Consensus 35 ~~~~~~~~~~~~~~~~--~~~~Y~r~~npt~~~Le~~iA~le~--------~~~~~~~~sG~~Ai~~~l~all~~GD~Vv 104 (394)
T PRK09028 35 FDTVAEMRHAAKNRAN--GEMFYGRRGTPTHFAFQAAIVELEG--------GAGTALYPSGAAAISNALLSFLKAGDHLL 104 (394)
T ss_pred cCCHHHHHHHhccCcc--CCceecCCCCchHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 4555566555433211 1134655 2345799999998862 24789999999999999999999999999
Q ss_pred ecCCCccchHHHH----hhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 139 LPRPGFPYYEARA----THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 139 ~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
+++|.|.++...+ ...|+++..++. .+.+.+++.++++++++++++|+||+|.+ .++++|+++|++
T Consensus 105 v~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~-------~~~e~l~~~l~~~TklV~lespsNPtg~v---~dl~~I~~la~~ 174 (394)
T PRK09028 105 MVDSCYEPTRDLCDKILKGFGIETTYYDP-------MIGEGIRELIRPNTKVLFLESPGSITMEV---QDVPTLSRIAHE 174 (394)
T ss_pred EECCCcHHHHHHHHHhhhhcceEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCcH---HHHHHHHHHHHH
Confidence 9999997776433 446776665532 14577888888899999999999999888 789999999999
Q ss_pred cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhh-hc
Q 014603 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLN-IS 292 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (422)
+|+++|+|++|+... ...++ .++.| +++.|.+|+++++ +.-.|+++.+ +++.+++..... ..
T Consensus 175 ~g~~lvvD~t~a~p~----~~~Pl-~~GaD---ivv~S~tK~l~Gh~d~~~G~~~~~--------~~~~~~l~~~~~~~G 238 (394)
T PRK09028 175 HDIVVMLDNTWASPI----NSRPF-EMGVD---ISIQAATKYIVGHSDVMLGTATAN--------EKHWDQLREHSYLMG 238 (394)
T ss_pred cCCEEEEECCccccc----cCCcc-ccCce---EEEEeCCeEecCCCCEEEEEEECC--------HHHHHHHHHHHHhcC
Confidence 999999999997521 11222 34444 9999999999665 4666766543 345555554432 33
Q ss_pred cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 293 SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 293 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
...++...+.+..-|+. +.-+.++..++...+.+.|+++|.+.-+.+|
T Consensus 239 ~~~~p~~a~l~~rgl~T-----L~lR~~~~~~na~~la~~L~~~p~v~~V~yP 286 (394)
T PRK09028 239 QCTSPDDVYLAMRGLRT-----LGVRLAQHEKNALKVANWLATRPEVDHVRHP 286 (394)
T ss_pred CCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence 46677777777776765 6778888899999999999998876544444
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=194.72 Aligned_cols=353 Identities=18% Similarity=0.150 Sum_probs=228.8
Q ss_pred ccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 41 ~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
..+|+.+|||.+|...... -..+|.|.+|+.+++.......+... ..+....+++.|.+..+.. ..+.++++++|+
T Consensus 52 DvdG~~ylDf~sgi~v~~~-GH~hP~Vv~Av~~q~~~~~h~~~~~~--~~e~~v~~ae~L~~~~p~~-~~~~~~f~~sGa 127 (447)
T COG0160 52 DVDGNEYLDFLSGIAVLNL-GHNHPRVVEAVKRQLAKLNHTHTRDL--YYEPYVELAEKLTALAPGS-GLKKVFFGNSGA 127 (447)
T ss_pred eCCCCEEEEcccCcchhcc-CCCCHHHHHHHHHHHHHhhcccCCcc--cchhHHHHHHHHHHhCCcc-cCCeEEecCCcH
Confidence 3469999999997655423 25689999999999886432222221 1144555555555433211 457899999999
Q ss_pred HHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-C-------------CeEEEeeccCC--CCcc--------cCHH
Q 014603 121 QAIEVILTVLA--RPGANILLPRPGFPYYEARATHS-H-------------LEVRHFDLLPA--KGWE--------VDLD 174 (422)
Q Consensus 121 ~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g-------------~~~~~~~~~~~--~~~~--------~d~~ 174 (422)
+|++.+++... .....|+.....||+....+..+ + ..++.+|.... +.+. ...+
T Consensus 128 eA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~ 207 (447)
T COG0160 128 EAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALE 207 (447)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHH
Confidence 99999987642 23478999999998764433322 2 12334443211 1111 1223
Q ss_pred HHHHhhc-----CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCe
Q 014603 175 AVEALAD-----ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV 247 (422)
Q Consensus 175 ~l~~~~~-----~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (422)
.++..+. ....+.+|..| +...|. +.|.+.++++.++|++||+++|+||+|.++.++|+ ...++..+..+++
T Consensus 208 ~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~gv~PDi 286 (447)
T COG0160 208 YIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGVEPDI 286 (447)
T ss_pred HHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chhhhhcCCCCCE
Confidence 3444332 24466667777 666776 57778899999999999999999999999999994 4466666654444
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
++ ++|.++. |+++|.++++ +++++........++..|+++++++.+.|+..+++ .+.++..+.-+
T Consensus 287 vt---~aK~ig~-G~Pl~avv~r--------~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e---~L~~~a~~~G~ 351 (447)
T COG0160 287 VT---LAKSLGG-GLPLSAVVGR--------AEIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEE---NLLERAAELGE 351 (447)
T ss_pred EE---ecccccC-CCceeEEecc--------HHhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHH
Confidence 44 4799655 9999999986 56766333444556788999999999999865433 33344444444
Q ss_pred HHHHHhh----cCCCCCCCCCCCCceEEEEecCcccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--
Q 014603 328 ICCDRLK----EIPCITCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-- 398 (422)
Q Consensus 328 ~l~~~L~----~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-- 398 (422)
++++.|+ +.|.+. - ...-|.++.+.+..... +.......+..+ +.++|+.+..+..+ .+.+||.+.
T Consensus 352 ~l~~~L~~l~~~~~~Ig-d-VRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~-~~~~Glil~~~G~~--~nviRi~PPL~ 426 (447)
T COG0160 352 YLRDRLEELQEKHPLIG-D-VRGLGLMIGVELVKDRDTKEPDAELAAKIVAR-AFERGLLLLTCGPH--GNVLRILPPLT 426 (447)
T ss_pred HHHHHHHHHHhhcCcee-c-ccccceEEEEEEecCCCCCCCCHHHHHHHHHH-HHHcCCEEeccCCC--CcEEEEeCCcc
Confidence 4444444 344333 1 23337788887754211 000112344444 45679888775533 589999997
Q ss_pred cChHHHHHHHHHHHHHHHHh
Q 014603 399 VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+++++++++++|.+++++.
T Consensus 427 is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 427 ISDEELDEGLDILEEALKEA 446 (447)
T ss_pred cCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999764
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-24 Score=199.47 Aligned_cols=222 Identities=21% Similarity=0.203 Sum_probs=162.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hCCCeEEEe
Q 014603 86 TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HSHLEVRHF 161 (422)
Q Consensus 86 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~ 161 (422)
.....+++++++++.+. +..+++++|++|+..++.+++++||+|+++.|+|.+...... ..|+++..+
T Consensus 60 ~p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~ 131 (388)
T PRK07811 60 NPTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPV 131 (388)
T ss_pred CccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEe
Confidence 35688999999999842 234555677999999999999999999999999986433222 246666555
Q ss_pred eccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 162 DLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
+. .|++++++.++++++++++++|+||+|.. .++++|.++|+++|+++|+|++|+..... .++ ..
T Consensus 132 d~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~---~dl~~I~~la~~~gi~lIvD~a~a~~~~~----~p~-~~ 196 (388)
T PRK07811 132 DL-------SDLDAVRAAITPRTKLIWVETPTNPLLSI---TDIAALAELAHDAGAKVVVDNTFASPYLQ----QPL-AL 196 (388)
T ss_pred CC-------CCHHHHHHhcCcCCeEEEEECCCCCccee---cCHHHHHHHHHHcCCEEEEECCCCccccC----Cch-hh
Confidence 42 48899999998899999999999999988 67899999999999999999999763321 122 12
Q ss_pred CCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
+.+ +++.|++|.++++| .+.||+++++ +++.+++...... ....++..++.+...|+. +..+.
T Consensus 197 gaD---ivv~S~sK~l~g~~~~~gG~vv~~~-------~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t-----l~~R~ 261 (388)
T PRK07811 197 GAD---VVVHSTTKYIGGHSDVVGGALVTND-------EELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT-----LAVRM 261 (388)
T ss_pred CCc---EEEecCceeecCCCCcEEEEEEECC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-----HHHHH
Confidence 333 89999999998754 5679988764 3566666554433 224445555544444543 56667
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 320 DILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++..++.+.+.+.|+++|.+..+.+|
T Consensus 262 ~~~~~na~~la~~L~~~p~v~~V~yP 287 (388)
T PRK07811 262 DRHSENAEAVAEFLAGHPEVSTVLYP 287 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECC
Confidence 77788899999999988776533344
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-24 Score=198.61 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=157.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCcc----chHHHHhhCCCeEEEe
Q 014603 86 TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFP----YYEARATHSHLEVRHF 161 (422)
Q Consensus 86 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~----~~~~~~~~~g~~~~~~ 161 (422)
.....+++++++++++ .+ ..++ +++|++++..++.+++++||+|+++.+.|. .+...++..|+++..+
T Consensus 44 ~p~~~~L~~~lA~l~g------~~-~~v~-~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~ 115 (376)
T PRK06460 44 NPTVLELTKKIVELEN------AE-MGVA-FSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDAS 115 (376)
T ss_pred CccHHHHHHHHHHHhC------CC-cEEE-eCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEE
Confidence 3567899999999983 32 3444 466679999999999999999999986553 4456677788888776
Q ss_pred eccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 162 DLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
+.+ +.+.+++.++++++++++++|+||||.+++. ++|.++|+++|+++|+|++|.... ...++ ..
T Consensus 116 ~~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~~----~~~~l-~~ 180 (376)
T PRK06460 116 NPG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVDI---TELSKVCKENGSILIVDATFSTPI----NQKPL-EL 180 (376)
T ss_pred CCC-------CHHHHHHhcCCCceEEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcCccc----cCChh-hc
Confidence 642 2234555556789999999999999999764 567888889999999999987521 11111 11
Q ss_pred CCCCCeEEEecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhhhcc-CcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS-DPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
+ ..+++.|+||+|++. +.++||++++ +++++++.......+ +.++... ..+++. ..+++.+.
T Consensus 181 ~---~divv~S~sK~l~G~~~~~~G~~~~~--------~~l~~~l~~~~~~~g~~~~~~~a---~~~l~~--~~~l~~r~ 244 (376)
T PRK06460 181 G---ADIVVHSASKFLAGHNDVIAGLAAGY--------GKLLNVIDQMRRTLGTSLDPHAA---YLTLRG--IKTLKIRM 244 (376)
T ss_pred C---CCEEEeecceeccCCCCceEEEEecC--------HHHHHHHHHHHHhcCCCCCHHHH---HHHHhc--hhhHHHHH
Confidence 2 348999999998643 3789999875 467787776554332 3333222 223332 35678888
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 320 DILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+++.++++.+.+.|+++|.+..+..|
T Consensus 245 ~~~~~n~~~l~~~L~~~p~v~~v~yp 270 (376)
T PRK06460 245 DVINRNAEQIAEFLEGHPKVVKVYYP 270 (376)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECC
Confidence 99999999999999988776534444
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-24 Score=200.63 Aligned_cols=215 Identities=20% Similarity=0.222 Sum_probs=160.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~ 162 (422)
+...++++.++++.+ . +..+++++|++|+..++.+++++||+|+++.+.|... ...+...|++++.++
T Consensus 65 p~~~~le~~lA~l~g------~--~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd 136 (403)
T PRK07503 65 PTLALLEQRMASLEG------G--EAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVD 136 (403)
T ss_pred chHHHHHHHHHHHhC------C--CcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeC
Confidence 357899999999883 2 3457777889999999999999999999999988653 234456788877776
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||+|.+. ++++|.++|+++|+++|+|++|+.... + .++ .++
T Consensus 137 ~-------~d~~~l~~~i~~~tklV~le~p~NPtG~~~---di~~I~~la~~~gi~lIvD~a~a~~~~-~---~~l-~~g 201 (403)
T PRK07503 137 L-------TDPAALKAAISDKTRMVYFETPANPNMRLV---DIAAVAEIAHGAGAKVVVDNTYCTPYL-Q---RPL-ELG 201 (403)
T ss_pred C-------CCHHHHHHhcCccCcEEEEeCCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCccccc-C---Cch-hhC
Confidence 4 278899999988999999999999999985 578889999999999999999975321 1 122 223
Q ss_pred CCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh--hh-hccCcchHHHHHHHHHHhhchHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF--LN-ISSDPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
.+ +++.|++|.++++| .+.|+++.+ +++.++++.. .. .....+++.++.+...|+. +..+
T Consensus 202 ~D---i~v~S~tK~l~g~gd~~gG~v~~~--------~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~t-----l~~r 265 (403)
T PRK07503 202 AD---LVVHSATKYLGGHGDITAGLVVGG--------KALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKT-----LALR 265 (403)
T ss_pred CC---EEEccccccccCCCceeEEEEEcC--------HHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcch-----HHHH
Confidence 32 88999999998866 778888853 4677777633 22 2335566666665555543 5556
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC
Q 014603 319 TDILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~~~~ 340 (422)
.++..++...+.+.|+++|.+.
T Consensus 266 ~~~~~~na~~~a~~L~~~p~v~ 287 (403)
T PRK07503 266 MDRHCASAQAVAEWLARHPAVE 287 (403)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 6666788888888898887655
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-24 Score=197.64 Aligned_cols=221 Identities=16% Similarity=0.175 Sum_probs=168.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~ 162 (422)
.....|++++|++. ..+++++++|+++|+..++.+++++||+|+++.|+|.+.... ....|+++..++
T Consensus 53 pt~~~Le~~lA~le--------g~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd 124 (388)
T PRK08861 53 PNRGLLEQTLSELE--------SGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVD 124 (388)
T ss_pred chHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEEC
Confidence 45789999999998 357999999999999999999999999999999999864332 223456666553
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||||.+++ +++|.++|+++|+++|+|++|....+. .++ .++
T Consensus 125 ~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~----~pl-~~G 189 (388)
T PRK08861 125 Q-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ----KPL-ELG 189 (388)
T ss_pred C-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC----CCc-ccC
Confidence 1 4789999988889999999999999999975 667788888999999999999753321 122 234
Q ss_pred CCCCeEEEecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
.| +++.|++|.++++ +...|++++++ +++.++++..... ....++...+.+..-|+. +.-+.+
T Consensus 190 aD---ivv~S~tK~l~G~~d~~gG~i~~~~-------~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-----l~lR~~ 254 (388)
T PRK08861 190 AD---FVIHSTTKYINGHSDVIGGVLITKT-------KEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-----LGARMR 254 (388)
T ss_pred CC---EEEeecceeccCCCcceeEEEEecH-------HHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-----HHHHHH
Confidence 43 8999999998764 47789888753 3566666654433 345677777777777765 677778
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..++...+.+.|+.+|.+.-+.+|
T Consensus 255 ~~~~~a~~~a~~L~~~p~v~~V~yP 279 (388)
T PRK08861 255 VHEESAQQILAYLQTQSLVGTIYHP 279 (388)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECC
Confidence 8888999999999988776434344
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-23 Score=200.94 Aligned_cols=341 Identities=14% Similarity=0.093 Sum_probs=225.2
Q ss_pred eecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC---CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 49 PLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS---STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 49 ~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~---~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
.++.|.+. ...+|.+.+++.+...-...+.|. ...|..+++..+.+++.+.+|. +...+..++|+++.+..
T Consensus 72 ~~g~G~~~----~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~--~~~~l~~~~GA~a~~~~ 145 (481)
T PRK04366 72 FYPLGSCT----MKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGM--DAVTLQPAAGAHGELTG 145 (481)
T ss_pred eecCcccC----CCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC--CceEEEeCcHHHHHHHH
Confidence 35556544 467788888888752112345673 3567888888888888887764 33344444555555443
Q ss_pred H--HH-HhcCCCC----EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCccc
Q 014603 126 I--LT-VLARPGA----NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGN 198 (422)
Q Consensus 126 ~--~~-~l~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~ 198 (422)
+ ++ .+.++|| +|+++.++|+.+...+...|++++.++.+ .++.+|++.|++.++++++++++++|+ |+|.
T Consensus 146 l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~--~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~ 222 (481)
T PRK04366 146 LLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSN--EDGLVDLEALKAAVGEDTAALMLTNPN-TLGL 222 (481)
T ss_pred HHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecC--CCCCcCHHHHHhhcccCCeEEEEeCCC-Cccc
Confidence 2 33 3456666 99999999999999999999999999874 346789999999998899999999988 8996
Q ss_pred ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC----CceeEEEEeeCCCC
Q 014603 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNG 274 (422)
Q Consensus 199 ~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~----G~r~G~~~~~~~~~ 274 (422)
. .+++++|+++|+++|+++++|+++..... +. .+...++.| ++++|.+|+|+.| |..+|++.+++
T Consensus 223 ~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~-g~--~~~~~~GaD---~~~~~~hK~l~~P~g~Ggp~~G~l~~~~--- 291 (481)
T PRK04366 223 F--ERNILEIAEIVHEAGGLLYYDGANLNAIL-GK--ARPGDMGFD---VVHLNLHKTFSTPHGGGGPGSGPVGVKE--- 291 (481)
T ss_pred c--chHHHHHHHHHHHcCCEEEEEecChhhhc-cc--CCccccCCC---EEEEechhhcCCCCCCCCCCeeeeeehh---
Confidence 5 35799999999999999999999863211 21 123344544 8899999998654 45578887753
Q ss_pred cccchhHHHHHHhh--------------------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 275 ILQDSGIVDSIKSF--------------------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 275 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
++.+.+... +....+.+.....++..++.....+.+++..++...+.+++.+.|+
T Consensus 292 -----~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~ 366 (481)
T PRK04366 292 -----ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLK 366 (481)
T ss_pred -----hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 233322100 0011122334445555556555567788888888888999999998
Q ss_pred cCCCCCCCCCCCCc-eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-CCCeEEEEec--cChHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-LKDWLRITFA--VEPSALEDGLGR 410 (422)
Q Consensus 335 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~iRis~~--~~~~~l~~~~~~ 410 (422)
++..+. . +... .-+.+.++.....+. +..++..+| .++||.+....... ..+.+|++++ +++++|+.+++.
T Consensus 367 ~~~~~~-~--~~~~~~~~~~~~~~~~~~g~-~~~~v~~~L-~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~ 441 (481)
T PRK04366 367 DIYDLP-Y--DRPCMHEFVLSGKKLKETGV-RTLDIAKRL-LDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAA 441 (481)
T ss_pred hhCccc-C--CCCeeEEEEEECccccccCC-CHHHHHHHH-HHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHH
Confidence 863332 1 2111 112222221011111 466777776 45698865322212 2678999997 789999999999
Q ss_pred HHHHHHHhc
Q 014603 411 MKAFYDRHA 419 (422)
Q Consensus 411 l~~~~~~~~ 419 (422)
|+++.++..
T Consensus 442 l~~i~~~~~ 450 (481)
T PRK04366 442 MKQIAEEAK 450 (481)
T ss_pred HHHHHHHHH
Confidence 999887653
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-24 Score=201.33 Aligned_cols=348 Identities=17% Similarity=0.187 Sum_probs=221.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|.+.+++.+++.+.....+.. ...+.+..+++.+....+ .-..+.++|+++|++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~~~~~~~~~--~~~~~~~~la~~l~~~~p-~~~~~~~~f~~sGse 112 (421)
T PRK06777 37 VEGREYIDFAAGIAVLNTG-HRHPKVVAAVRQQLDQFTHTAYQI--VPYASYVTLAERINALAP-IDGPAKTAFFTTGAE 112 (421)
T ss_pred CCCCEEEEcccCHHhhccC-CCCHHHHHHHHHHHhhcccccccc--cCChHHHHHHHHHHHhCC-CCCCceEEEeCCcHH
Confidence 4689999998886543223 457899999999998642222211 112333444555543222 112468999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CCe-------------EEEeeccCCCCc----ccCHHHHHHhhc
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HLE-------------VRHFDLLPAKGW----EVDLDAVEALAD 181 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~~-------------~~~~~~~~~~~~----~~d~~~l~~~~~ 181 (422)
|++.+++... ....+|+..+.+||+....+... +.. +..++. +.... ..+++.+++.+.
T Consensus 113 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~l~~~~~ 191 (421)
T PRK06777 113 AVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALY-PNELHGVSVEEALSSVERLFK 191 (421)
T ss_pred HHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCC-CccccCcCHHHHHHHHHHHHH
Confidence 9999988542 12367999999999886554432 210 011111 11000 113556776664
Q ss_pred ----CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 182 ----ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 182 ----~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
++..+.++..| ++..|. ++|.+.+++|.++|++||+++|+||+|.++.++|.. .....++..+++ .++||
T Consensus 192 ~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~-~~~~~~~~~pDi---v~~sK 267 (421)
T PRK06777 192 ADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKL-FAMEYYDVKPDL---ITMAK 267 (421)
T ss_pred hccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCch-hhhhhcCCCCCE---Eeeeh
Confidence 23455666677 667775 678999999999999999999999999998777753 233334333333 36899
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.++ +|+|+||++++ +++++.+.... ..+.+.+++.++++.++|+...+ ++..++++++.+++++.|+
T Consensus 268 ~l~-~G~pigav~~~--------~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~ 335 (421)
T PRK06777 268 SLG-GGMPISAVVGR--------AEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLE 335 (421)
T ss_pred hhc-CCCceEEEEEc--------HHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Confidence 986 89999999986 46766665433 23457789999999999975432 3455666666667766666
Q ss_pred cC----CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHH---HHhcCeEEecCCCCCCCCeEEEEec--cChHHHH
Q 014603 335 EI----PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL---AKEESVIVLPGITVGLKDWLRITFA--VEPSALE 405 (422)
Q Consensus 335 ~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~ 405 (422)
++ |.+. ...+.+. ++.+.+..... + ....++...+ +.++||.+.|+..++ +++|++++ .++++++
T Consensus 336 ~l~~~~~~i~-~vrg~G~-~~~i~~~~~~~-~-~~~~~~~~~l~~~~~~~Gv~i~~~~~~g--~~lr~~ppl~i~~~~i~ 409 (421)
T PRK06777 336 KAKASCPAIV-DIRARGS-MVAVEFNDPQT-G-KPSPEFTRQYQRQALEEGLLLLSCGVHG--NVIRFLYPLTIPDAQFS 409 (421)
T ss_pred HHHHhCCCeE-EecCceE-EEEEEEecCcc-C-CccHHHHHHHHHHHHhCCeEEeecCCCC--CEEEEeCCCCCCHHHHH
Confidence 53 4333 2245544 44444432100 0 0122222222 456799999986553 79999996 7899999
Q ss_pred HHHHHHHHHHH
Q 014603 406 DGLGRMKAFYD 416 (422)
Q Consensus 406 ~~~~~l~~~~~ 416 (422)
+++++|++++.
T Consensus 410 ~~~~~l~~~l~ 420 (421)
T PRK06777 410 KALNILTRLLA 420 (421)
T ss_pred HHHHHHHHHHh
Confidence 99999998874
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=196.92 Aligned_cols=327 Identities=16% Similarity=0.091 Sum_probs=205.6
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC-------CCCCC------CCCCCHHHHHHHHHHHhhcCCCCCCC
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR-------FNCYS------STVGILPARRAIADYLNRDLPYKLSP 110 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~y~------~~~g~~~lr~~ia~~l~~~~~~~~~~ 110 (422)
...+|+|++++ |.++..+|.+.+++.+++.... ....+ ....+.++|+.+|++++ . +
T Consensus 3 ~~~~~~~~s~~---YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~------~-~ 72 (370)
T PRK05937 3 ESLSIDFVTND---FLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG------A-P 72 (370)
T ss_pred CCceEEeECCC---ccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-C
Confidence 35689999998 6677888888888877765421 11111 22347789999999983 2 2
Q ss_pred CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc------CCc
Q 014603 111 DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD------ENT 184 (422)
Q Consensus 111 ~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~------~~~ 184 (422)
+.+++++|+ .++..+...+.++||.|++...+|.+....++......+.++ ..|++.|++.++ +.+
T Consensus 73 ~~l~~~sG~-~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~ 144 (370)
T PRK05937 73 EAFIVPSGY-MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGR 144 (370)
T ss_pred eEEEECChH-HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCc
Confidence 335555554 566666666677888988888899877776665433333332 147888888775 245
Q ss_pred eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee
Q 014603 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~ 264 (422)
.++++++++|++|.+.| +++|.++|+++|+++++|++|+...+..........++..+..+.+.|+||.+|..| .
T Consensus 145 ~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G--~ 219 (370)
T PRK05937 145 IFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG--A 219 (370)
T ss_pred EEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc--e
Confidence 56678899999999965 778888899999999999999863332111100111222222366889999988777 3
Q ss_pred EEEEeeCCCCcccchhHHHHHHhh---hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014603 265 GWLVTSDPNGILQDSGIVDSIKSF---LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITC 341 (422)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 341 (422)
| ++.. +++...+... ..+..+.++....++.++++...+.. +..+++++++++++.+.|+.. +
T Consensus 220 ~-vl~~--------~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~-~--- 285 (370)
T PRK05937 220 A-LLSS--------SEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA-A--- 285 (370)
T ss_pred E-EEcC--------HHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC-C---
Confidence 3 3332 2343433321 11223455666666666665432222 345677778888887776542 1
Q ss_pred CCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 342 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 342 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+. ....+.++.. ...++... +.++||.+..... ...+++|+|++ ++++|++++++.|.++++++.
T Consensus 286 ---~~--~~~~i~~~~~------~~~~~~~~-L~~~gi~v~~~~~-~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 286 ---PG--CVQPIFLPGI------SEQELYSK-LVETGIRVGVVCF-PTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred ---CC--CEEEEEeCCh------hHHHHHHH-HHHCCeeEEeeCC-CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 11 1111233321 34445444 4667998864321 22568999998 899999999999999998764
Q ss_pred c
Q 014603 420 K 420 (422)
Q Consensus 420 ~ 420 (422)
+
T Consensus 353 ~ 353 (370)
T PRK05937 353 K 353 (370)
T ss_pred C
Confidence 4
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-23 Score=197.72 Aligned_cols=220 Identities=21% Similarity=0.272 Sum_probs=163.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCCe
Q 014603 82 CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHLE 157 (422)
Q Consensus 82 ~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~~ 157 (422)
+|+. ....++++.++++++ .+.+++++||++|+..++.+++++||+|+++.+.|.+. ...+...|.+
T Consensus 50 r~~~-p~~~~le~~la~l~g--------~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~ 120 (380)
T TIGR01325 50 RYAN-PTVAAFEERIAALEG--------AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIE 120 (380)
T ss_pred cCCC-chHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCE
Confidence 4443 347899999999872 25788899999999999999999999999999888653 3355667888
Q ss_pred EEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC
Q 014603 158 VRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 158 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
+..++.. |++.+++.++++++++++++|+||+|.+. ++++|.++|+++|+++|+|++|...... .+
T Consensus 121 v~~v~~~-------d~~~l~~~i~~~tklV~le~p~np~g~~~---dl~~I~~la~~~gi~livD~a~~~~~~~----~p 186 (380)
T TIGR01325 121 VSFVDPT-------DLNAWEAAVKPNTKLVFVETPSNPLGELV---DIAALAELAHAIGALLVVDNVFATPVLQ----QP 186 (380)
T ss_pred EEEECCC-------CHHHHHHhcCCCceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccC----Cc
Confidence 8777642 67889988888899999999999999995 6888899999999999999999753221 12
Q ss_pred ccccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHH
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFF 315 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~ 315 (422)
+ .++.+ +++.|++|.++++|.++ |+++++ +++.+.+....... ...++...+++...++. +
T Consensus 187 l-~~g~D---ivv~S~sK~l~g~g~~~gG~vv~~--------~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-----l 249 (380)
T TIGR01325 187 L-KLGAD---VVVYSATKHIDGQGRVMGGVIAGS--------EELMAEVAVYLRHTGPAMSPFNAWVLLKGLET-----L 249 (380)
T ss_pred h-hhCCC---EEEeeccceecCCCCeEEEEEEeC--------HHHHHHHHHHHHhhCCCCCHHHHHHHHhccCc-----H
Confidence 2 22333 88889999998888887 566654 35666666554322 23344554444444443 5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014603 316 SKITDILRETADICCDRLKEIPCITC 341 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~~~~~ 341 (422)
..+.++..++++.+.+.|+++|.+..
T Consensus 250 ~~r~~~~~~~a~~la~~L~~~p~v~~ 275 (380)
T TIGR01325 250 SLRMQKQFDSALAIAEWLQAQPQVQA 275 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccE
Confidence 56777788888899999998877653
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-24 Score=203.59 Aligned_cols=344 Identities=15% Similarity=0.131 Sum_probs=215.4
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|..++||..|...... -..+|.|.+++.+++....... +.......++.+.+++++ ..+.++++++|+
T Consensus 72 ~dG~~ylD~~sg~~~~~~-Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~--------~~~~~~f~~SGs 142 (474)
T PLN02624 72 PEGKKYLDFLSAYSAVNQ-GHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF--------GYDMVLPMNTGA 142 (474)
T ss_pred CCCCEEEEcccchhcccC-CCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc--------CCCeEEEeCChH
Confidence 358889999888654322 2458999999999998632211 111222345555555543 246899999999
Q ss_pred HHHHHHHHHhcC---------CC-CEEEecCCCccchHHHHhhCCCeE-EEe---eccCC---CCcccCHHHHHHhhc--
Q 014603 121 QAIEVILTVLAR---------PG-ANILLPRPGFPYYEARATHSHLEV-RHF---DLLPA---KGWEVDLDAVEALAD-- 181 (422)
Q Consensus 121 ~a~~~~~~~l~~---------~g-d~Vl~~~~~~~~~~~~~~~~g~~~-~~~---~~~~~---~~~~~d~~~l~~~~~-- 181 (422)
+|++.+++.... ++ ..|+....+|++....+....... ... |..+. -.+ -|++.+++.++
T Consensus 143 eA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~ 221 (474)
T PLN02624 143 EGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-GDLDALEKIFEED 221 (474)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-CCHHHHHHHHHhC
Confidence 999999875432 12 368888888988754443322111 000 10000 001 26788888774
Q ss_pred -CCceEEEEeCCCCCcccccCHH-HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC
Q 014603 182 -ENTVALVIINPGNPCGNVYTYQ-HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 182 -~~~~~i~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~ 259 (422)
.+..++++..++|++|.++|++ .+++|.++|++||+++|+||+|.++.++|... .....+..++++ +++|.+++
T Consensus 222 ~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~-a~~~~~i~pDiv---~lsK~lgg 297 (474)
T PLN02624 222 GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML-ACDWEEVRPDVV---ILGKALGG 297 (474)
T ss_pred CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh-hHHhcCCCCCEE---EecccccC
Confidence 2455666666799999987666 59999999999999999999999877766432 111122222233 35899987
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE--- 335 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 335 (422)
+++++|+++.+ ++++..+.... ..+.+.+++.+.++.++|+...+.. ..++..++.+.+++.|++
T Consensus 298 G~~pigav~~~--------~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~---l~~~~~~~~~~l~~~L~~l~~ 366 (474)
T PLN02624 298 GVIPVSAVLAD--------KDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEK---LAERSAKLGQELRDQLQKIQK 366 (474)
T ss_pred CCCcceeeeec--------HHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHH
Confidence 77999999985 35666554333 2344678889999999887543222 223334444444444443
Q ss_pred -CCC-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHH
Q 014603 336 -IPC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 336 -~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l 411 (422)
++. +. ...+. |.++.+.++.... +.....++...+ .++||.+.|+. .+++|++++ +++++|++++++|
T Consensus 367 ~~~~~i~-~vrg~-G~~~~i~l~~~~~-~~~~a~~~~~~L-~e~GV~v~p~~----~~~lR~~p~l~~t~e~id~~l~~L 438 (474)
T PLN02624 367 QFPKLIK-EVRGR-GLLNAVVLNSPKL-GPVSAYDVCLKL-KERGLLAKPTH----DTIIRLAPPLSISEDELQECSKAL 438 (474)
T ss_pred hCCCceE-EEEee-EEEEEEEecCCCc-ChHHHHHHHHHH-HhCCeEEecCC----CCEEEEECCccCCHHHHHHHHHHH
Confidence 332 22 11233 5555555543210 001244566654 66799998863 578999975 7899999999999
Q ss_pred HHHHHHh
Q 014603 412 KAFYDRH 418 (422)
Q Consensus 412 ~~~~~~~ 418 (422)
++++++.
T Consensus 439 ~~~l~~~ 445 (474)
T PLN02624 439 SDVLEHD 445 (474)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-24 Score=201.99 Aligned_cols=333 Identities=14% Similarity=0.116 Sum_probs=216.5
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC---CCCC-CC-CC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA---RFNC-YS-ST--VGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~-y~-~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
+.+++|+++..+ +.|+.+.+++.+.+... .... +. .. ....+.++.+ +++ ++++++|++++
T Consensus 26 ~~~iyld~~a~g-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~------g~~~~~v~~~~ 93 (406)
T TIGR01814 26 NAVIYLDGNSLG-----LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLV------GAKEDEVVVMN 93 (406)
T ss_pred CCcEEecCCCcC-----cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-ccc------CCCCCcEEEeC
Confidence 668999988744 44788888888766431 1101 11 11 1112222233 444 46789999999
Q ss_pred CHHHHHHHHHHHhcCCC---CEEEecCCCccch----HHHHhhCCCeEE--EeeccCCCCcccCHHHHHHhh---cCCce
Q 014603 118 GCTQAIEVILTVLARPG---ANILLPRPGFPYY----EARATHSHLEVR--HFDLLPAKGWEVDLDAVEALA---DENTV 185 (422)
Q Consensus 118 g~~~a~~~~~~~l~~~g---d~Vl~~~~~~~~~----~~~~~~~g~~~~--~~~~~~~~~~~~d~~~l~~~~---~~~~~ 185 (422)
|+|++++.++.++.+++ +.|++...+|++. ...++..|.+++ ...+....++.++++.+++.+ .++++
T Consensus 94 ~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~ 173 (406)
T TIGR01814 94 TLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIA 173 (406)
T ss_pred CchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeE
Confidence 99999999999876654 3688888899763 334456677762 122222334457888888876 36789
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC-CCCcee
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI-VPGWRL 264 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~G~r~ 264 (422)
++++++++|.||..+ ++++|.++|+++|+++++|++|+. |..+..+...+.| +++.|.+|+++ +|| .
T Consensus 174 lv~~~~v~~~tG~~~---~~~~i~~~~~~~g~~~~vD~aq~~----G~~~id~~~~gvD---~~~~s~hK~l~g~pG--~ 241 (406)
T TIGR01814 174 VILLSGVQYYTGQLF---DMAAITRAAHAKGALVGFDLAHAV----GNVPLDLHDWGVD---FACWCTYKYLNAGPG--A 241 (406)
T ss_pred EEEEeccccccceec---CHHHHHHHHHHcCCEEEEEccccc----CCcccccccCCCC---EEEEcCccccCCCCC--e
Confidence 999999999999996 588888999999999999999987 4444455555554 89999999864 455 3
Q ss_pred EEEEeeCCCCcccchhHHHH----------------HHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014603 265 GWLVTSDPNGILQDSGIVDS----------------IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328 (422)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 328 (422)
|.++.++.. ....+.+... ........++++.....++.++++...+..++...++.+++.++
T Consensus 242 ~l~v~~~~~-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~ 320 (406)
T TIGR01814 242 GAFVHEKHA-HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDY 320 (406)
T ss_pred EEEEehhhh-hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333332110 0000000000 00000113467777878888888765455678888999999999
Q ss_pred HHHHhhcC----CCCCCCCCCC----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c-
Q 014603 329 CCDRLKEI----PCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A- 398 (422)
Q Consensus 329 l~~~L~~~----~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~- 398 (422)
+++.|+++ +++.+. .|. .+..+.+.++. +..++...| .++||.+... ..+.+|+|+ +
T Consensus 321 l~~~l~~~~~~~~~~~i~-~~~~~~~r~~~v~~~~~~-------~~~~~~~~L-~~~gi~v~~~----~~~~iRiS~~~~ 387 (406)
T TIGR01814 321 LEELIKARCGGPPVLTII-TPRDHAQRGCQLSLTHPV-------PGKAVFQAL-IKRGVIGDKR----EPSVIRVAPVPL 387 (406)
T ss_pred HHHHHHhhcCCCCceEEe-CCCChhhcCCeEEEEecC-------CHHHHHHHH-HHCCEEEecc----CCCeEEEechhc
Confidence 99998875 346533 332 12344455541 356666666 5669987532 246899998 4
Q ss_pred -cChHHHHHHHHHHHHHH
Q 014603 399 -VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 399 -~~~~~l~~~~~~l~~~~ 415 (422)
++++|++++++.|++++
T Consensus 388 ~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 388 YNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 68999999999998765
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=197.99 Aligned_cols=220 Identities=17% Similarity=0.181 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~ 162 (422)
+...+|++.+|++.+ .+..+++++|++|+..++.+++++||+|+++.+.|.+. ...+...|++++.++
T Consensus 59 p~~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd 130 (391)
T TIGR01328 59 PTVSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFIN 130 (391)
T ss_pred chHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEEC
Confidence 346789999999983 24578888889999999999999999999999988643 344455787877776
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+ |++.+++.++++++++++++|+||+|.+. ++++|.++|+++|+++|+|++|..... + .++ ..+
T Consensus 131 ~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~---dl~~I~~la~~~gi~livD~a~a~~~~-~---~~~-~~g 195 (391)
T TIGR01328 131 MA-------IPEEVKAHIKDNTKIVYFETPANPTMKLI---DMERVCRDAHSQGVKVIVDNTFATPML-T---NPV-ALG 195 (391)
T ss_pred CC-------CHHHHHHhhccCCeEEEEECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCchhcc-C---Cch-hcC
Confidence 42 78899999888999999999999999996 477888889999999999999975322 1 122 122
Q ss_pred CCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhh--h-ccCcchHHHHHHHHHHhhchHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLN--I-SSDPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
.+ +++.|++|.++++|.++ |+++++ ++++++++.... . ....++...+.+...|+. +..+
T Consensus 196 ~D---ivv~S~sK~lgg~g~~~gG~v~~~--------~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t-----l~~r 259 (391)
T TIGR01328 196 VD---VVVHSATKYIGGHGDVVAGLICGK--------AELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT-----LNIR 259 (391)
T ss_pred CC---EEEccccccccCCCCceEEEEEcC--------HHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc-----HHHH
Confidence 22 88899999999888775 555543 467776664321 2 224455555555555543 4556
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 319 TDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
.++..++.+.+.+.|+++|.+..+.+|
T Consensus 260 ~~~~~~na~~la~~L~~~p~v~~v~yp 286 (391)
T TIGR01328 260 MKRHSENAMKVAEYLKSHPAVEKVYYP 286 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 777888899999999988776534343
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-23 Score=196.69 Aligned_cols=351 Identities=16% Similarity=0.154 Sum_probs=217.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|.+.+++.+++.+.. .+.......+.+..+++.|.+..+ ...+.++|+++|++
T Consensus 38 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~--~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGsE 112 (443)
T PRK08360 38 IEGNEYIDFLSDAAVQNVG-HNNPRVVKAIKEQTDKLI--HYTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSFGLSGSD 112 (443)
T ss_pred CCCCEEEEccccHhhcccC-CCCHHHHHHHHHHHHhcc--CccccccCcHHHHHHHHHHHHhCC--CCCCEEEEcCCHHH
Confidence 4689999999886553233 457899999999997632 122111122344455555544322 22358999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhh-CCC------------eEEEeeccCCC--Ccc--------cCHHHH
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATH-SHL------------EVRHFDLLPAK--GWE--------VDLDAV 176 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~-~g~------------~~~~~~~~~~~--~~~--------~d~~~l 176 (422)
|++.+++... .....|+....+||+....+.. .+. .+..++..... .+. -+++.+
T Consensus 113 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (443)
T PRK08360 113 ANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYI 192 (443)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHH
Confidence 9999988642 2236788889899887433222 121 11222211100 000 123445
Q ss_pred HHhhc----CCceEEEEeCC-CCCcccccC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEE
Q 014603 177 EALAD----ENTVALVIINP-GNPCGNVYT-YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250 (422)
Q Consensus 177 ~~~~~----~~~~~i~i~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i 250 (422)
++.+. .+..+.++..| +||+|.+++ .+.+++|.++|++||+++|+||+|.++.++|... ....++..++++
T Consensus 193 ~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~-a~~~~~~~pDii-- 269 (443)
T PRK08360 193 KEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWF-AIEHFGVEPDII-- 269 (443)
T ss_pred HHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccch-hhhhcCCCCCEE--
Confidence 55553 23345555667 699998776 5679999999999999999999999887777532 222233333333
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
++||.++ +|+|+|+++++ +++++.+.... ..+.+.+++.++++.++|+...+. +..++++++.+++
T Consensus 270 -tlsK~l~-~G~pigav~~~--------~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l 336 (443)
T PRK08360 270 -TLGKPLG-GGLPISATIGR--------AEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK---NLLKRAEKLGNYT 336 (443)
T ss_pred -Eeccccc-CCceeEEEEEc--------HHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHH
Confidence 5699976 89999999986 46777775442 334567888899999988864322 2334444444455
Q ss_pred HHHhhc----CCCCCCCCCCCCceEEEEecCcccc-cCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cC
Q 014603 330 CDRLKE----IPCITCPKKPEGSMFVMVKLNYSLL-EGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VE 400 (422)
Q Consensus 330 ~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~ 400 (422)
++.|++ .|.+. . ...-|.++.+.+..... ... .....+... +.++|+.+.+.. .+.+|++++ ++
T Consensus 337 ~~~L~~l~~~~~~v~-~-vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~~----~~~lr~~P~l~~t 409 (443)
T PRK08360 337 KKRLEEMKKKHELIG-D-VRGIGLMIGVDLVKDRETKERAYEEAAKVVWR-AWELGLIVTFFS----GNVLRIQPPLTIE 409 (443)
T ss_pred HHHHHHHHHhCCCee-e-eeccceEEEEEEecCCcccCccHHHHHHHHHH-HHHCCeEEeecC----CCEEEEeCCCCCC
Confidence 554443 33222 2 22346666666632100 000 012344444 456799987532 478999776 79
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 014603 401 PSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~~~ 420 (422)
+++++++++++.+++++..+
T Consensus 410 ~~~id~~~~~l~~~l~~~~~ 429 (443)
T PRK08360 410 KEVLDEGLDILEEAIEDVEE 429 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987643
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=198.95 Aligned_cols=335 Identities=16% Similarity=0.165 Sum_probs=218.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.++||.++..... .-..+|++.+++.++++...... ........++.+.+++++ ..+.++++++|+
T Consensus 34 ~~g~~~lD~~s~~~~~~-~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs 104 (401)
T TIGR01885 34 VEGKRYLDFLSAYSAVN-QGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF--------GYDKVLPMNTGA 104 (401)
T ss_pred CCCCEEEEcccCHhhcc-CCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc--------CCCEEEEeCccH
Confidence 36888999998754421 12357999999999987532111 001223456666666655 235899999999
Q ss_pred HHHHHHHHHhc----------CCCCEEEecCCCccch-HHHHhhCCC------------eEEEeeccCCCCcccCHHHHH
Q 014603 121 QAIEVILTVLA----------RPGANILLPRPGFPYY-EARATHSHL------------EVRHFDLLPAKGWEVDLDAVE 177 (422)
Q Consensus 121 ~a~~~~~~~l~----------~~gd~Vl~~~~~~~~~-~~~~~~~g~------------~~~~~~~~~~~~~~~d~~~l~ 177 (422)
+|++.++.... ...+.|+....+|++. .......+. ++..++. .|++.|+
T Consensus 105 ~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le 177 (401)
T TIGR01885 105 EAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALE 177 (401)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHH
Confidence 99999998742 1236788888898874 232222221 1111211 2678888
Q ss_pred Hhhc---CCceEEEEeCCCCCcccccC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecC
Q 014603 178 ALAD---ENTVALVIINPGNPCGNVYT-YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSI 253 (422)
Q Consensus 178 ~~~~---~~~~~i~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 253 (422)
+.++ ++..++++..+++++|...+ .+.+++|.++|++||+++|+||+|.++.++|... .....+..++++ ++
T Consensus 178 ~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~~~~~~~~di~---~~ 253 (401)
T TIGR01885 178 EALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CVDHENVKPDIV---LL 253 (401)
T ss_pred HHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HHhhcCCCCCEE---Ee
Confidence 8774 34455555555889999875 4579999999999999999999998877766432 121222222333 35
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
+|.+++.++|+|+++++ +++++.+... ...+.+.+++.+.++.++|+...++ ...++++++.+++++.
T Consensus 254 gK~l~~g~~~ig~v~~~--------~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~ 322 (401)
T TIGR01885 254 GKALSGGVYPVSAVLAD--------DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQ 322 (401)
T ss_pred eccccCCCCCcEEEEEc--------HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHH
Confidence 79987766999999986 4677766542 2234456788899998888764332 3445677778888888
Q ss_pred hhcCCCCCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 333 LKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 333 L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
|++++ ..++ ..+..|.+..+.++.... + ....++...+ .++||.+.|+. .+.+|++++ +++++|+++++
T Consensus 323 L~~l~-~~~~~~~~g~g~~~~i~~~~~~~-~-~~~~~l~~~l-~~~Gv~v~~~~----~~~lRi~p~l~~t~~~i~~~l~ 394 (401)
T TIGR01885 323 LKKLP-KPIITEVRGRGLLNAIVIDESKT-G-RTAWDLCLKL-KEKGLLAKPTH----GNIIRLAPPLVITEEQLDEGLE 394 (401)
T ss_pred HHhcc-CCceeEEeecCeeEEEEeccCcc-h-hHHHHHHHHH-HhCCEEEEecC----CCEEEEeCCccCCHHHHHHHHH
Confidence 98873 2211 112335555555543210 0 1245666665 56799998753 578999986 88999999999
Q ss_pred HHHHHH
Q 014603 410 RMKAFY 415 (422)
Q Consensus 410 ~l~~~~ 415 (422)
+|++++
T Consensus 395 ~l~~~l 400 (401)
T TIGR01885 395 IIKKVI 400 (401)
T ss_pred HHHHHh
Confidence 999876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=195.39 Aligned_cols=215 Identities=17% Similarity=0.158 Sum_probs=160.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH---hhCCCeEEEeec
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA---THSHLEVRHFDL 163 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~ 163 (422)
+...++++.++++++ .+++++++||++|+..++.+++++||+|+++.+.|.++...+ ...|++++.+.
T Consensus 53 p~~~~lE~~lA~l~g--------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~- 123 (385)
T PRK08574 53 PTLRPLEEALAKLEG--------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY- 123 (385)
T ss_pred ccHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC-
Confidence 467899999999983 357788899999999999999999999999999998876555 34566665432
Q ss_pred cCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 164 LPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.|++.+++.+++ +++++++++|+||+|.+++ +++|+++|+++|+++|+|++|+... ...++ ..+
T Consensus 124 -------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~----~~~~l-~~G 188 (385)
T PRK08574 124 -------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPL----LYRPL-RHG 188 (385)
T ss_pred -------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccc----cCChh-hhC
Confidence 367889998887 8999999999999999975 6788999999999999999986421 11122 223
Q ss_pred CCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
. .+++.|++|.++++|-.+ |++++.+ +++.+++...... ....++...+.+...|+. +..+.+
T Consensus 189 a---Divv~S~sK~l~g~~d~~gG~vi~~~-------~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-----L~~R~~ 253 (385)
T PRK08574 189 A---DFVVHSLTKYIAGHNDVVGGVAVAWS-------GEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-----LEVRFE 253 (385)
T ss_pred C---cEEEeeCceeecCCCCceeEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-----HHHHHH
Confidence 3 389999999988777554 6566643 4566666655442 334555555555555554 566667
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q 014603 321 ILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~ 340 (422)
+..++...+.+.|+++|.+.
T Consensus 254 ~~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 254 RQCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred HHHHHHHHHHHHHHcCCCcC
Confidence 77788888899999887665
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=195.55 Aligned_cols=283 Identities=17% Similarity=0.221 Sum_probs=192.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCC
Q 014603 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHL 156 (422)
Q Consensus 81 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~ 156 (422)
.+|+ .+...+|+++++++. . ++.+++++|++|+..++.+++++||+|+++.|+|+++...+ ...|+
T Consensus 46 ~ry~-~p~~~~Le~~lA~l~--------~-~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~ 115 (366)
T PRK07582 46 GRAS-NPTWRALEAALGELE--------G-AEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV 115 (366)
T ss_pred ECCC-CccHHHHHHHHHHHc--------C-CCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence 3444 356789999999986 2 35666777788999999999999999999999998876544 34688
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
+++.++..+. .+ .+.++++++++++|+||+|.+ .++++|+++|+++|+++|+|++|... .+..
T Consensus 116 ~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v---~di~~I~~~a~~~g~~lvVD~t~~~~--~~~~-- 178 (366)
T PRK07582 116 TVREAPTAGM------AE----AALAGADLVLAETPSNPGLDV---CDLAALAAAAHAAGALLVVDNTTATP--LGQR-- 178 (366)
T ss_pred EEEEECCCCh------HH----HhccCceEEEEECCCCCCCCc---cCHHHHHHHHHHcCCEEEEECCCCCc--cccC--
Confidence 8887765321 11 223578999999999999977 46899999999999999999998631 1222
Q ss_pred CccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHH
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
++ .++.+ +++.|++|.+++ +|+++||+++++ +++.+++...... ...++++.++.+...|+.
T Consensus 179 p~-~~g~D---ivv~S~sK~l~G~~g~~~G~v~~~~-------~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t----- 242 (366)
T PRK07582 179 PL-ELGAD---LVVASDTKALTGHSDLLLGYVAGRD-------PELMAAVERWRLLAGAIPGPFEAWLAHRSLGT----- 242 (366)
T ss_pred ch-hcCCc---EEEecccccccCCCCeeEEEEEcCc-------HHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-----
Confidence 22 13333 788999999854 679999999753 4577777665543 345677777776666664
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEES 378 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 378 (422)
+..+.++..++...+.+.|+++|.+..+.+|. .|-.+.+.++ +. +.+.+++++.+
T Consensus 243 l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--------~~-~~~~~~~~~l~ 313 (366)
T PRK07582 243 LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--------DA-AAAERFVAASR 313 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--------CH-HHHHHHHHhCC
Confidence 55566777889999999999888765333322 2334455564 12 23344556556
Q ss_pred eEEe-cCCC-----------CC--C-CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 379 VIVL-PGIT-----------VG--L-KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 379 i~v~-~g~~-----------~~--~-~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+... ++.+ .+ . ++.||+|++.+ +.+.+++.|+++++.
T Consensus 314 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE--~~~dli~dl~~al~~ 365 (366)
T PRK07582 314 LVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIE--DTDDLVADLERALDA 365 (366)
T ss_pred cceecccCCCccchhhhHHHcCCCCCCCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 5543 1110 01 1 35799999963 445556666666653
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-24 Score=201.76 Aligned_cols=347 Identities=15% Similarity=0.108 Sum_probs=217.4
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|.+....+ ..+|.+.+++.+++.+.. ..|.+.....++.+.+++.+ + ..+.+++++||++
T Consensus 47 ~dG~~~lD~~~g~~~~~lG-h~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGse 117 (426)
T PRK00062 47 VDGNEYIDYVGSWGPMILG-HAHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTE 117 (426)
T ss_pred CCCCEEEEcccchhhhhcC-CCCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHH
Confidence 3689999999987654333 378999999999998743 23334444455555555553 1 3568999999999
Q ss_pred HHHHHHHHhcC--CCCEEEecCCCccchHHHHhhC-CCeEE-----EeeccC----CCCc---ccCHHHHHHhhcC--Cc
Q 014603 122 AIEVILTVLAR--PGANILLPRPGFPYYEARATHS-HLEVR-----HFDLLP----AKGW---EVDLDAVEALADE--NT 184 (422)
Q Consensus 122 a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~-g~~~~-----~~~~~~----~~~~---~~d~~~l~~~~~~--~~ 184 (422)
|++.+++.... .+++|+..+++||++...+... +.... ..+..+ .... ..|++.+++.+.. +.
T Consensus 118 A~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 197 (426)
T PRK00062 118 ATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDE 197 (426)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCc
Confidence 99999987543 2579999999999986433221 10000 000000 0000 0267888887742 23
Q ss_pred eEEEEeCC-CCCcccccC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 185 VALVIINP-GNPCGNVYT-YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
.+.++..| ...+|.+.+ .+++++|.++|++||+++|+||+|.++ ..|... ....++..++ +.+++|.++ .|+
T Consensus 198 ~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~-~~~~~~~~pD---i~~~gK~l~-~G~ 271 (426)
T PRK00062 198 IAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGG-AQGYYGVTPD---LTTLGKIIG-GGL 271 (426)
T ss_pred EEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCcc-HHHHhCCCcc---hHhhhhHhh-CCC
Confidence 44455555 455787765 888999999999999999999999977 333211 1122222222 457899975 789
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhh---h-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSF---L-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
|+|+++++ +++++.+... . ..+.+.+++.++++.++|+... +...++..+.....++.+.+.+++++
T Consensus 272 p~ga~~~~--------~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (426)
T PRK00062 272 PVGAFGGR--------REIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAG 343 (426)
T ss_pred cceeeeEH--------HHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999885 4677777532 1 1234678899999999888643 23444444444445555554444553
Q ss_pred CCCCCCCCCCceEEEEecCcccccC-----CCC---HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEG-----INS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~---~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~ 409 (422)
+... ....|.++.+.+....... ..+ ...+... +.++||.+.|.. .+.+++++.+++++++++++
T Consensus 344 -~~~~-vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~Gv~v~~~~----~~~~~~~~~~t~~ei~~~~~ 416 (426)
T PRK00062 344 -IPLT-VNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHA-MLDEGVYLAPSQ----FEAGFVSAAHTDEDIEKTLE 416 (426)
T ss_pred -CceE-EEEecceEEEEEecCCCcchhhhccccHHHHHHHHHH-HHHCCeEeecCC----cCceeeeccCCHHHHHHHHH
Confidence 3211 2233555555553210000 001 1344444 456799998753 24578887799999999999
Q ss_pred HHHHHHHHh
Q 014603 410 RMKAFYDRH 418 (422)
Q Consensus 410 ~l~~~~~~~ 418 (422)
+|+++++++
T Consensus 417 ~l~~~l~~~ 425 (426)
T PRK00062 417 AARKAFAAL 425 (426)
T ss_pred HHHHHHHhh
Confidence 999998764
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-23 Score=197.26 Aligned_cols=351 Identities=19% Similarity=0.162 Sum_probs=219.1
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|++.+++.+++.+.. .+.......+.+..+++.+....+ ....+.++++++|++
T Consensus 53 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGse 128 (443)
T PRK06058 53 VDGNRLIDLGSGIAVTSVG-NSAPRVVEAVREQVARFT--HTCFMVTPYEGYVAVAEQLNRLTP-GDHEKRSALFNSGAE 128 (443)
T ss_pred CCCCEEEEcCcchhhhccC-CCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC-CCCCCEEEEeCCcHH
Confidence 3688899998886443233 457899999999997632 222211233555566666655332 111258999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCC--------------eEEEeeccCCCC----ccc--------CH
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHSHL--------------EVRHFDLLPAKG----WEV--------DL 173 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~----~~~--------d~ 173 (422)
|++.+++... ...++|+....+||++...+..... .+..++.....+ ... ..
T Consensus 129 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK06058 129 AVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAI 208 (443)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHH
Confidence 9999988432 1237899999999998655442210 111222110000 000 12
Q ss_pred HHHHHhhcCCceEEEEeCCCCCc-ccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 174 DAVEALADENTVALVIINPGNPC-GNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~npt-G~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
+.+++.+..+..+.++..|.+.. |.. ++.+.+++|.++|++||+++|.||++.++.++|... ....++..+++++
T Consensus 209 ~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f-a~~~~gv~PDiv~-- 285 (443)
T PRK06058 209 TVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLIT-- 285 (443)
T ss_pred HHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh-HHHhcCCCCCEEE--
Confidence 23334444455667778885544 444 568899999999999999999999999987777533 2233333334443
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICC 330 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 330 (422)
++|.++ +|+|+|+++++ +++++.+.... ..+.+.++++++++.+.|+...+. +..++++++.+++.
T Consensus 286 -~gK~l~-~G~Pi~av~~~--------~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~ 352 (443)
T PRK06058 286 -TAKGIA-GGLPLSAVTGR--------AEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEED---DLVARARQIEALMT 352 (443)
T ss_pred -Eccccc-CCCccEEEEEc--------HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHH
Confidence 379975 78999999986 46777665433 345678999999999999864322 34455555566666
Q ss_pred HHhhcC----CCCCCCCCCCCceEEEEecCcccccCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChH
Q 014603 331 DRLKEI----PCITCPKKPEGSMFVMVKLNYSLLEGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPS 402 (422)
Q Consensus 331 ~~L~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~ 402 (422)
+.|+++ +.+. ..... |.++.+.+........ .....+... +.++||++.++..+ .+++|+.++ .+++
T Consensus 353 ~~L~~l~~~~~~i~-~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~-~~~~Gv~~~~~~~~--~~~lr~~Ppl~~t~~ 427 (443)
T PRK06058 353 DRLRALAAEDDRIG-DVRGR-GAMIAIELVKPGTTEPDAELTKALAAA-AHAAGVIVLTCGTY--GNVIRLLPPLVIGDE 427 (443)
T ss_pred HHHHHHHhhCCcEE-eeecc-ceEEEEEEecCCCCCCcHHHHHHHHHH-HHHCCeEEeccCCC--CCEEEEECCCccCHH
Confidence 666543 3222 11333 5565666632100000 012233333 35679999886544 378999876 7999
Q ss_pred HHHHHHHHHHHHHHH
Q 014603 403 ALEDGLGRMKAFYDR 417 (422)
Q Consensus 403 ~l~~~~~~l~~~~~~ 417 (422)
++++++++|++++++
T Consensus 428 ~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 428 LLREGLDVLEAALAD 442 (443)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=197.68 Aligned_cols=353 Identities=19% Similarity=0.147 Sum_probs=219.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCC--CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCY--SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.+|+.+|||..|......+ ..+|+|.+++.++++....... .......++.+.+++++ +-..+.++|+++|
T Consensus 40 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~------~~~~~~v~f~~SG 112 (433)
T PRK08117 40 VDGKEYLDFTSGIAVANVG-HRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEIT------PGGLDCFFFSNSG 112 (433)
T ss_pred CCCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC------CCCCCEEEEeCcH
Confidence 3688999999886543333 4678999999999876322111 11122234444444443 1234689999999
Q ss_pred HHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhh-CCC-------------eEEEeeccCCC--Ccc--------cCH
Q 014603 120 TQAIEVILTVLA--RPGANILLPRPGFPYYEARATH-SHL-------------EVRHFDLLPAK--GWE--------VDL 173 (422)
Q Consensus 120 ~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~-~g~-------------~~~~~~~~~~~--~~~--------~d~ 173 (422)
++|++.+++... ....+|+..+.+||+....+.. .+. .+..+|..... ... -++
T Consensus 113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (433)
T PRK08117 113 AEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL 192 (433)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHH
Confidence 999999988632 1236889999999887544321 110 11222221000 000 144
Q ss_pred HHHHHhhc----CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCe
Q 014603 174 DAVEALAD----ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV 247 (422)
Q Consensus 174 ~~l~~~~~----~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (422)
+.+++.++ .+..+.++..| ....|.+ ++.+.++++.++|++||+++|+||+|.++.++|.... ...++..+
T Consensus 193 ~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~-~~~~gv~p-- 269 (433)
T PRK08117 193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA-AQTFGVVP-- 269 (433)
T ss_pred HHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchh-HhhcCCCC--
Confidence 55666543 24466677777 5556664 5788899999999999999999999998877775422 12233222
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 326 (422)
.+.+++|.++ +|+|+|+++++ +++++.+.... ..+.+.++++++++.++|+...+. ...++++++.
T Consensus 270 -Di~t~sK~lg-~G~pigav~~~--------~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g 336 (433)
T PRK08117 270 -DIMTIAKGIA-SGLPLSAVVAS--------KELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEE---KLLDNANEMG 336 (433)
T ss_pred -CEeehhhhcc-CCCcceeEEEc--------HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHH
Confidence 2468899975 89999999986 46766664332 234467889999999999864322 2344455555
Q ss_pred HHHHHHhhc----CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cC
Q 014603 327 DICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VE 400 (422)
Q Consensus 327 ~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~ 400 (422)
+++++.|++ ++.+ ...+..|.++++.+..............+...+.++||.+.+... ..+.+|++++ ++
T Consensus 337 ~~l~~~L~~l~~~~~~~--~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~--~~~~lRl~p~~~~t 412 (433)
T PRK08117 337 AYALERLEVLKEKHPVI--GDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN--AGNVLRMIPPLTVT 412 (433)
T ss_pred HHHHHHHHHHHhcCCce--eeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC--CCCEEEEeCCccCC
Confidence 555555554 3212 123455677777774321000001122333445667998876322 2578999975 89
Q ss_pred hHHHHHHHHHHHHHHHHhccc
Q 014603 401 PSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~~~~ 421 (422)
+++|++++++|.++++++.+|
T Consensus 413 ~~~i~~~~~~l~~~l~~~~~~ 433 (433)
T PRK08117 413 KEEIDEGLDILDEALTEYEAK 433 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999887654
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-23 Score=193.99 Aligned_cols=283 Identities=18% Similarity=0.127 Sum_probs=196.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~ 163 (422)
...++++.++++.+ . +..+++++|+.|+..++.+++++||+|+++.+.|.+. ...+...|++++.++.
T Consensus 64 ~~~~le~~lA~l~g------~--~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 64 TVRAFEEMLAKLEG------A--EDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred hHHHHHHHHHHHhC------C--CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 46799999999983 2 3455667778899999998999999999999999763 3455667888887753
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.|++.+++.+ ++++++++++|+|+++.. .++++|.++|+++|+++|+|++|+...+.. ++ ..+.
T Consensus 136 -------~d~~~l~~~i-~~tklV~ie~pt~~~~~~---~dl~~i~~la~~~gi~vivD~a~a~~~~~~----p~-~~g~ 199 (389)
T PRK05968 136 -------RDEEAVAKAL-PGAKLLYLESPTSWVFEL---QDVAALAALAKRHGVVTMIDNSWASPVFQR----PI-TLGV 199 (389)
T ss_pred -------CCHHHHHHhc-ccCCEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcchhccC----ch-hcCC
Confidence 2788898887 578899998877776655 899999999999999999999997543211 22 1233
Q ss_pred CCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
+ +++.|++|.++++| .+.|+++.+ ++++++++.... .....++..++.+...|+. +..+.+
T Consensus 200 D---ivv~S~tK~l~g~~~~~gG~i~~~--------~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-----l~~r~~ 263 (389)
T PRK05968 200 D---LVIHSASKYLGGHSDTVAGVVAGS--------KEHIARINAEAYPYLGAKLSPFEAWLLLRGLRT-----LPLRMK 263 (389)
T ss_pred c---EEEeeccccccCCCCeEEEEEEEC--------HHHHHHHHHHHHHhCCCCCChHHHHHHHcccCc-----HHHHHH
Confidence 2 88889999988765 578888764 456676665432 2235566666666666654 566677
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC-----------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPE-----------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG- 388 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~- 388 (422)
+..++.+.+.+.|+++|.+..+.+|. .|..+.+.++.. .+..+++..| +..++.+.-|..+.
T Consensus 264 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~-----~~~~~f~~~L-~~~~~~~s~G~~~sl 337 (389)
T PRK05968 264 AHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG-----IDVRAFADAL-KLFRLGVSWGGHESL 337 (389)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-----HHHHHHHHhC-CccEEecCCCCCCce
Confidence 77778889999999998876454441 233445556421 1345555554 44455544444332
Q ss_pred ---------------------C-CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 389 ---------------------L-KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 389 ---------------------~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
. ++.+|+|++. |+.+.+++.|++++++.
T Consensus 338 v~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl--E~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 338 VVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL--EGTEALWADLEQALAAA 387 (389)
T ss_pred eeeCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHHh
Confidence 1 4689999996 35666667777777643
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=194.85 Aligned_cols=289 Identities=16% Similarity=0.140 Sum_probs=195.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
+...++++.++++. ..+++++++|+++|+..++.+++++||+|+++.|+|.++.. .+...|++++.++
T Consensus 65 pt~~~Le~~lA~l~--------g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd 136 (394)
T PRK07050 65 PTSLALAQRLAEIE--------GGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYD 136 (394)
T ss_pred HHHHHHHHHHHHHh--------CCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEEC
Confidence 44678899999887 34689999999999999999999999999999999987653 4566788887765
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.. +.+.+++.++++++++++++|+||+|.. .++++|+++|+++|+++|+|++|....+ ..++ .++
T Consensus 137 ~~-------~~~~l~~~i~~~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a~~~~----~~~l-~~G 201 (394)
T PRK07050 137 PL-------IGAGIADLIQPNTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYSAGLA----FKPF-EHG 201 (394)
T ss_pred CC-------CHHHHHHhcCCCCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCcccccc----cCHH-HcC
Confidence 21 4467888888899999999999999766 8999999999999999999999975221 1111 123
Q ss_pred CCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
. .+++.|++|.+++ .+.+.|++++.+ +++.++++..... ..+.++...+.+...|+. +..+.+
T Consensus 202 a---Di~v~S~tK~~~g~~~~~gG~v~~~~-------~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t-----l~~Rl~ 266 (394)
T PRK07050 202 V---DISVQALTKYQSGGSDVLMGATITAD-------AELHAKLKLARMRLGIGVSADDCSLVLRGLPS-----LQVRLA 266 (394)
T ss_pred C---eEEEEECCceecCCCCeeEEEEEECC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc-----HHHHHH
Confidence 2 3889999999754 456789888754 4677777665543 345565655555444443 444667
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
+..++...+.+.|+++|.+..+.+|. .|..+.+.+.... +..+..+++..+ +..++.+.-|
T Consensus 267 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~--~~~~~~~~~~~l-~~~~~~~s~G 343 (394)
T PRK07050 267 AHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERY--SPAQVDAFVEAL-ELFAIGWSWG 343 (394)
T ss_pred HHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCC--CHHHHHHHHHcC-CCCeeccccC
Confidence 77777778888888877655332221 1223344453210 001223333332 3334322222
Q ss_pred CCCC-----------------CCCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 385 ITVG-----------------LKDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 385 ~~~~-----------------~~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.... .++.||+|++. |+.+.+++.|.+++...
T Consensus 344 ~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl--E~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 344 GACSLAMPYDVASMRTAKWPHRGTLVRLYIGL--EDEADLIADLEQALEAA 392 (394)
T ss_pred CccceEeeCcccccchhhcCCCCCEEEEEeCc--CCHHHHHHHHHHHHHHh
Confidence 2110 13679999997 35666777777777654
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=193.02 Aligned_cols=352 Identities=16% Similarity=0.141 Sum_probs=214.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEE-ecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYL-TLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~-~~g~ 119 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++...... .. .....+.+..+++.|.+....+...+ .++| ++||
T Consensus 36 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~~~~~-~~-~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG 112 (425)
T PRK09264 36 EDGKEYIDFFAGAGALNYG-HNNPVLKQALIDYLQRDGIT-HG-LDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTG 112 (425)
T ss_pred CCCCEeeecccchhhccCC-CCCHHHHHHHHHHHHhcccc-cc-cccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCH
Confidence 3689999999887554333 46899999999998752111 11 11122444455555543211011122 5656 5899
Q ss_pred HHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC------------eEEEeeccCCCCc-ccCHHHHHHhhcC-
Q 014603 120 TQAIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPAKGW-EVDLDAVEALADE- 182 (422)
Q Consensus 120 ~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~~~~-~~d~~~l~~~~~~- 182 (422)
++|++.+++... ....+|+....+||++...+... +. .+..+|....... .-|++.+++.+.+
T Consensus 113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~ 192 (425)
T PRK09264 113 TNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDS 192 (425)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhc
Confidence 999999988653 22368999999999875443322 10 1222332110000 0256777777642
Q ss_pred ----CceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 183 ----NTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 183 ----~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
+..+.++..| ....|. ++|.+.+++|.++|++||+++|+||+++++.++|... .....+..++ +.+++|.
T Consensus 193 ~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~~~v~PD---i~t~~K~ 268 (425)
T PRK09264 193 SSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFERAGITPD---IVTLSKS 268 (425)
T ss_pred cCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhhcCCCCC---EEEeccc
Confidence 2355667777 555675 5788999999999999999999999999887766432 2222222233 3356899
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHh-hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKS-FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
++..|+|+|++++++ ++ ..+.. ....+.+.++++..++.++++...+ -.+..++++++.+++.+.|++
T Consensus 269 l~~~G~pigav~~~~--------~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~--~~~l~~~~~~~g~~l~~~l~~ 337 (425)
T PRK09264 269 ISGYGLPMALVLIKP--------EL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS--DDAFEKEVKAKGELVRERLEE 337 (425)
T ss_pred cCCCccceEEEEEch--------hh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHH
Confidence 766699999999963 33 22222 1223446677777777777742110 112344444555555554443
Q ss_pred ----CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 336 ----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 336 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
.|.+. ...+..|.++++.++... ....+... +.++||.+.+...+ .+.+|++++ +++++++++++
T Consensus 338 l~~~~~~~~-~~vrg~Gl~~~i~l~~~~-----~~~~l~~~-~~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~ei~~~~~ 408 (425)
T PRK09264 338 IAAKYPGLG-AEVRGRGMMQGIDFGDGE-----LAGKIAAE-AFENGLIIETSGPE--DEVVKLLPPLTIDEEELEEGLD 408 (425)
T ss_pred HHHhCCCce-ecceecccEEEEEecChH-----HHHHHHHH-HHHCCCEEeccCCC--CCEEEEeCCCCCCHHHHHHHHH
Confidence 43321 223445788888886421 23345444 45679999875432 378899887 78999999999
Q ss_pred HHHHHHHHhcc
Q 014603 410 RMKAFYDRHAK 420 (422)
Q Consensus 410 ~l~~~~~~~~~ 420 (422)
+|.+++++..+
T Consensus 409 ~l~~~l~~~~~ 419 (425)
T PRK09264 409 ILEEAVAEVLA 419 (425)
T ss_pred HHHHHHHHHHh
Confidence 99999987643
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=192.10 Aligned_cols=353 Identities=17% Similarity=0.146 Sum_probs=218.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|.+.+++.+++.+... +.......+.+..+++.+.+..+ +...+.++|+++|++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~SGse 112 (425)
T PRK07495 37 KEGRRYIDFAAGIAVVNTG-HRHPRVIAAVKAQLDRFTH--TCHQVVPYENYVRLAERLNALVP-GDFAKKTIFVTTGAE 112 (425)
T ss_pred CCCCEEEEccccHHhhccC-CCCHHHHHHHHHHHhhccC--cccCccCCHHHHHHHHHHHHhCC-CCCCCEEEECCchHH
Confidence 4689999999887553333 4678999999999876321 11111112334445555544322 111258999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCCCCcccC----HHHHHHhhc
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPAKGWEVD----LDAVEALAD 181 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~d----~~~l~~~~~ 181 (422)
|++.+++... ....+|+....+||++...+... +. .+..+|..... .+.+ ++.+++.+.
T Consensus 113 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~ 191 (425)
T PRK07495 113 AVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFK 191 (425)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHH
Confidence 9999988642 22368999999999875443221 11 12233322111 1122 344566553
Q ss_pred ----CCceEEEEeCC-CCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 182 ----ENTVALVIINP-GNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 182 ----~~~~~i~i~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
.+..+.++..| +..+| ..+|.+.+++|.++|++||+++|+||+|.++.++|... .....+. +..+.++||
T Consensus 192 ~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~-a~~~~gv---~pDi~tlsK 267 (425)
T PRK07495 192 ADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF-AMEHHEV---AADLTTMAK 267 (425)
T ss_pred hccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce-eecccCC---CCCEEeehh
Confidence 24456667777 33377 45799999999999999999999999999887776531 2222222 234677899
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.+ .+|+|+|+++++ +++.+.+.... ..+.+.+++.++++.++++...+.. ..++++++.+++++.|+
T Consensus 268 ~l-~~G~pigav~~~--------~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~ 335 (425)
T PRK07495 268 GL-AGGFPLAAVTGR--------AEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEED---LCERANQLGNRLKQRLA 335 (425)
T ss_pred hh-cCCccceEEEEc--------HHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHH
Confidence 96 578999999986 35666654432 3345778899998888887643222 33334444444444443
Q ss_pred ----cCCCCCCCCCCCCceEEEEecCcccccCCC--CHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHH
Q 014603 335 ----EIPCITCPKKPEGSMFVMVKLNYSLLEGIN--SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALED 406 (422)
Q Consensus 335 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~ 406 (422)
++|.+. . ....|.++|+.+......... ....+.. .+.++|+.+.+.... .+.+|+.+. .+++++++
T Consensus 336 ~l~~~~~~i~-~-vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~-~~~~~Gvl~~~~g~~--~~~~r~~Ppl~it~~~id~ 410 (425)
T PRK07495 336 SLRETVPEIA-D-IRGPGFMNAVEFNDADSGLPSAEFANRVRL-KALEKGLILLTCGVH--GNVIRFLAPITIQDDVFAE 410 (425)
T ss_pred HHHhhCCCee-e-eecCceEEEEEEecCCCCCccHHHHHHHHH-HHHHCCeEEeecCCC--CCEEEEeCCCccCHHHHHH
Confidence 344332 1 123388999988532110000 0123333 445679998764221 478999987 78999999
Q ss_pred HHHHHHHHHHHhcc
Q 014603 407 GLGRMKAFYDRHAK 420 (422)
Q Consensus 407 ~~~~l~~~~~~~~~ 420 (422)
++++|+++++++..
T Consensus 411 ~~~~l~~~l~~~~~ 424 (425)
T PRK07495 411 ALDILEASILEASA 424 (425)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987653
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-23 Score=209.80 Aligned_cols=342 Identities=14% Similarity=0.088 Sum_probs=230.4
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC---CCC----CCCCHHHHHHHHHHHhhcCCCCCCCC--CEEEe
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC---YSS----TVGILPARRAIADYLNRDLPYKLSPD--DVYLT 116 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~---y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~~ 116 (422)
.+++|+++..+ ++++..+.+++.+.......+. |.. ...+.+.|+.++++++ ++++ .|+||
T Consensus 34 ~~iYLD~Aatt----~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lg------a~~~~~~VvFt 103 (805)
T PLN02724 34 GVVYLDHAGAT----LYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFN------APPSDYACVFT 103 (805)
T ss_pred CCEeEeCCCCC----CCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhC------CCccceEEEEe
Confidence 37999999865 2344566666666544321111 111 1236788999999984 4454 58999
Q ss_pred cCHHHHHHHHHHHh-cCCCCEEEecCCCccch---HHHHhhCCCeEEEeeccCC------CCcccCH--HHHHHhh----
Q 014603 117 LGCTQAIEVILTVL-ARPGANILLPRPGFPYY---EARATHSHLEVRHFDLLPA------KGWEVDL--DAVEALA---- 180 (422)
Q Consensus 117 ~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~------~~~~~d~--~~l~~~~---- 180 (422)
+|+|+|++.++.++ .++||+|++..-.|.+. ...++..|++++.++++.. ....+++ +.|++.+
T Consensus 104 snaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l 183 (805)
T PLN02724 104 SGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKL 183 (805)
T ss_pred CChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhh
Confidence 99999999999987 67899999987777554 3444567888888887521 1112332 5565543
Q ss_pred ------cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc-----CcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 181 ------DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL-----GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 181 ------~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~-----~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
.++++++.+++.+|.||.++|.+.++.+.+.++.+ ++++++|.+++. |+.+.++..++.| ++
T Consensus 184 ~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~~~~D---fl 256 (805)
T PLN02724 184 QKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSRYPAD---FV 256 (805)
T ss_pred ccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhhcCCC---EE
Confidence 13567899999999999999877655554443332 368999999987 6666677777765 89
Q ss_pred EecCccccC-CCCceeEEEEeeCCCCcccchhHHHHHHh-------------------------hhhhccCcchHHHHHH
Q 014603 250 LGSISKRWI-VPGWRLGWLVTSDPNGILQDSGIVDSIKS-------------------------FLNISSDPATFIQGAV 303 (422)
Q Consensus 250 i~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~a~ 303 (422)
+.|++|+|| ..| +|++++++ ++.+.+.. .....++++.....++
T Consensus 257 ~~S~HK~~GgP~G--~G~L~vr~--------~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l 326 (805)
T PLN02724 257 VVSFYKIFGYPTG--LGALLVRR--------DAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAAL 326 (805)
T ss_pred EEecceeccCCCC--ceEEEEeh--------hhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHH
Confidence 999999987 345 78888763 22222221 1112356777777788
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCCCC--------CceEEEEecCcccccCCCCHHHH
Q 014603 304 PQILEKTEEEFFSKITDILRETADICCDRLKEIP------CITCPKKPE--------GSMFVMVKLNYSLLEGINSDMEF 369 (422)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~ 369 (422)
.++++...+..++.+.++.+++.+++.+.|++++ ++.++ .+. .+..+.+.+.... +..-....
T Consensus 327 ~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iy-g~~~~~~~~~~r~~ivsFnv~~~~--~~~v~~~~ 403 (805)
T PLN02724 327 RHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLY-GNHTFKLEFHIQGPIVTFNLKRAD--GSWVGHRE 403 (805)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEc-CCCCCCCCcccccCEEEEEEEcCC--CCEeCHHH
Confidence 8888765555678888999999999999999875 35533 221 1234444443210 00012233
Q ss_pred HHHHHHhcCeEEecCCCCCC-----------------------------------CCeEEEEec--cChHHHHHHHHHHH
Q 014603 370 ALKLAKEESVIVLPGITVGL-----------------------------------KDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 370 ~~~l~~~~gi~v~~g~~~~~-----------------------------------~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
+..++.++||.++.|..|.. .+.+|+|++ ++.+|++++++.|+
T Consensus 404 v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~ 483 (805)
T PLN02724 404 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFII 483 (805)
T ss_pred HHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHH
Confidence 55677788999999988752 277999998 78999999999999
Q ss_pred HHHHH
Q 014603 413 AFYDR 417 (422)
Q Consensus 413 ~~~~~ 417 (422)
+.+-.
T Consensus 484 ~~~~~ 488 (805)
T PLN02724 484 SSFVS 488 (805)
T ss_pred HHhhc
Confidence 97643
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=189.90 Aligned_cols=339 Identities=14% Similarity=0.131 Sum_probs=219.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|....+.++. +|.+.+++.+++.+... .+ .....+.+..+++++.+.. ..+.+++++||++|
T Consensus 34 dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~-~~--~~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA 105 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLIN-PS--PAFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEA 105 (395)
T ss_pred CCCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhccc-cc--ccccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHH
Confidence 68899999988655444443 69999999999875321 11 1234577888899886532 24689999999999
Q ss_pred HHHHHHHhcC------CC-CEEEecCCCccchHHHHhhC-CCeEEEeeccCC-CCc----ccCHHHHHHhhcCCceEEEE
Q 014603 123 IEVILTVLAR------PG-ANILLPRPGFPYYEARATHS-HLEVRHFDLLPA-KGW----EVDLDAVEALADENTVALVI 189 (422)
Q Consensus 123 ~~~~~~~l~~------~g-d~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~~----~~d~~~l~~~~~~~~~~i~i 189 (422)
++.+++.... +| .+|++.+.+||+....+... +.........+. .++ ..|++.+++.+.+++.++++
T Consensus 106 ~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~ 185 (395)
T PRK03715 106 NEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVML 185 (395)
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEE
Confidence 9999987641 23 67888999998875444332 222111000000 011 13678898888766665555
Q ss_pred eCCCCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 190 INPGNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 190 ~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
...++..|.. +|++.+++|.++|++||+++|+||+|.++..+|.... ...++..++ +.+++|.++ .|+++|.++
T Consensus 186 Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a-~~~~gv~PD---i~t~gK~lg-~G~p~~av~ 260 (395)
T PRK03715 186 EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFA-YELSGIEPD---IMTLGKGIG-GGVPLAALL 260 (395)
T ss_pred eCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhh-HhhcCCCCc---eeeehhhhh-CCcceEEEE
Confidence 5446667765 4688999999999999999999999998777775421 122232222 345689975 579999998
Q ss_pred eeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI---PCITCPKKP 345 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~ 345 (422)
+++ ++..........+.+.+++..+++.+.|+...+ ++..++++++.+++++.|+++ .++. . ..
T Consensus 261 ~~~--------~i~~~~~~~~~~T~~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~-~-vr 327 (395)
T PRK03715 261 AKA--------EVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLE-G-ER 327 (395)
T ss_pred Ecc--------ccccccCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcC-e-EE
Confidence 863 333211112223446678888888888876432 334556666666666666543 1232 1 22
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhc---CeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEE---SVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
..|.++.+.+... ....+ ...+.+. |+.+.+.. .+.+|++++ ++++++++++++|+++++++
T Consensus 328 G~Glm~~i~l~~~------~~~~~-~~~~~~~~~~Gi~~~~~~----~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 328 GEGLLRALLLGKD------IGPQI-VEKARDMQPDGLLLNAPR----PNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred cceeEEEEEecCc------hHHHH-HHHHHhccCCCEEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 3466777766431 12222 2333444 99987532 368999998 78999999999999998764
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=192.51 Aligned_cols=228 Identities=18% Similarity=0.158 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~ 162 (422)
+....|++.++++. ..+..++++||++|+..++.+++++||+|+++.+.|.+. ...++..|++++.++
T Consensus 64 p~~~~Le~~lA~le--------g~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd 135 (431)
T PRK08248 64 PTTDVFEKRIAALE--------GGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVD 135 (431)
T ss_pred chHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEEC
Confidence 34678888899887 245788999999999999999999999999999998653 344566888888876
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||||.+++ +++|.++|+++|+++|+|++++. +....++ .++
T Consensus 136 ~-------~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~----~~~~~pl-~~g 200 (431)
T PRK08248 136 P-------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFAS----PYLLRPI-EHG 200 (431)
T ss_pred C-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCc----cccCChh-HcC
Confidence 4 3788999999889999999999999999965 67888999999999999999863 2222222 233
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc-------------------------hhH-HHHHHhhh-hhccCc
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD-------------------------SGI-VDSIKSFL-NISSDP 295 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~-------------------------~~~-~~~~~~~~-~~~~~~ 295 (422)
.| +++.|++|.++++|.++|++++......... +.+ ........ ......
T Consensus 201 aD---ivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 277 (431)
T PRK08248 201 AD---IVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAAL 277 (431)
T ss_pred CC---EEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCC
Confidence 33 8889999999999999999877533211000 000 00111111 122345
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 296 ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 296 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++...+.+..-|+. +..+.++..++...+.+.|+++|.+..+.+|
T Consensus 278 ~p~~a~l~~rgl~t-----l~~R~~~~~~nA~~la~~L~~~p~v~~V~yP 322 (431)
T PRK08248 278 SPFNSFLLLQGLET-----LHLRMERHSENALAVAKFLEEHEAVEWVSYP 322 (431)
T ss_pred CHHHHHHHhcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECC
Confidence 55555655555554 6677788889999999999998876544444
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=195.17 Aligned_cols=347 Identities=18% Similarity=0.145 Sum_probs=217.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|++.+++.+++.......+. ....+.+..+++.+.+..+ ...+.++|+++|++
T Consensus 39 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGse 113 (423)
T PRK05964 39 ADGRELIDAISSWWVATHG-HNHPYIDQAIREQLDRLDHVIFA--GFTHEPAERLAQRLVALTP--GGLDHVFFSDSGSV 113 (423)
T ss_pred CCCCEEEEcchhHHhccCC-CCCHHHHHHHHHHHhhCCCcccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHH
Confidence 3689999999886554333 45789999999998763221111 1112444556666654332 23468999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCCcccCHHHHHHhh
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKGWEVDLDAVEALA 180 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d~~~l~~~~ 180 (422)
|++.+++.... +| .+|+....+||+....+..... .+..++....+....+++.+++.+
T Consensus 114 A~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l 193 (423)
T PRK05964 114 AVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALL 193 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHH
Confidence 99999886421 23 6899999999987544432211 111222211110011267777777
Q ss_pred cC--CceEEEEeCC--CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 181 DE--NTVALVIINP--GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 181 ~~--~~~~i~i~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
.. +..+.++..| +..+|.. ++.+++++|.++|++||+++|+||++.++.++|... .....+..++ +.+++|
T Consensus 194 ~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~-a~~~~~v~pD---i~~~~K 269 (423)
T PRK05964 194 EKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAGVSPD---IMCLSK 269 (423)
T ss_pred HhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-HHHhcCCCCC---eeeeeh
Confidence 42 3445556666 5667765 488999999999999999999999998887766432 1122222222 345689
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 328 (422)
.++.+++++|+++++ +++.+.+... ...+.+.++++.+++.++|+...+ ++..+++.++.+.
T Consensus 270 ~l~gG~~p~~av~~~--------~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~ 338 (423)
T PRK05964 270 GLTGGYLPLAATLCT--------AEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED---EPVLERVAALSAG 338 (423)
T ss_pred hhhcCcccceEEEEc--------HHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHH
Confidence 976555899998875 5677776431 112335788888888888875332 2234455555555
Q ss_pred HHHHhhcC---CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHH
Q 014603 329 CCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSA 403 (422)
Q Consensus 329 l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~ 403 (422)
+++.|+++ |.+. . ....|.+..+.+..... . .....+...+ .++||.+.+. .+.+|++++ +++++
T Consensus 339 l~~~l~~l~~~~~i~-~-vrg~Gl~~~i~l~~~~~-~-~~~~~l~~~l-~~~Gv~v~~~-----~~~lR~~p~l~~t~ed 408 (423)
T PRK05964 339 LAEGLEPFRDLPGVA-D-VRVLGAIGAVELDRPVL-E-RDGPALRAFA-LERGVLLRPL-----GNTIYLMPPYIITAEE 408 (423)
T ss_pred HHHHHHhhccCCCeE-E-eecccEEEEEEeccCcc-h-hHHHHHHHHH-HHCCeEEEec-----CCEEEEeCCcccCHHH
Confidence 66555544 3222 1 12335666666643210 0 0133455544 5679999874 257999988 89999
Q ss_pred HHHHHHHHHHHHHHh
Q 014603 404 LEDGLGRMKAFYDRH 418 (422)
Q Consensus 404 l~~~~~~l~~~~~~~ 418 (422)
|++++++++++++++
T Consensus 409 Id~~v~~l~~al~~~ 423 (423)
T PRK05964 409 LDRITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998763
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=191.20 Aligned_cols=348 Identities=15% Similarity=0.116 Sum_probs=211.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-CCCEEE-ecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-PDDVYL-TLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~-~~g~ 119 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++..... ........+.+..+++.|.+....+.. .+.++| +++|
T Consensus 32 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~~~~--~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG 108 (412)
T TIGR02407 32 EDGKEYIDFFAGAGALNYG-HNNPKLKQALIDYLADDGI--IHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTG 108 (412)
T ss_pred CCCCEEEEcccchhhccCC-CCCHHHHHHHHHHHhhccc--eeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCc
Confidence 4689999999887554332 4689999999999875211 111111234555566666542110111 124655 5899
Q ss_pred HHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhC-CC------------eEEEeeccCCCCc-ccCHHHHHHhhcC-
Q 014603 120 TQAIEVILTVLAR--PGANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPAKGW-EVDLDAVEALADE- 182 (422)
Q Consensus 120 ~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~~~~-~~d~~~l~~~~~~- 182 (422)
++|++.+++.... ...+|+....+||+....+... +. .+..+|....... .-+++.+++.+.+
T Consensus 109 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~ 188 (412)
T TIGR02407 109 TNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDS 188 (412)
T ss_pred hHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhc
Confidence 9999999886532 2368999999999886544422 11 1122221100000 0135667776642
Q ss_pred ----CceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 183 ----NTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 183 ----~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
+..+.++..| +++.|. .+|.+.+++|.++|++||+++|+||++.++.++|... .....+..++ +.+++|.
T Consensus 189 ~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a~~~~~v~PD---i~~~~K~ 264 (412)
T TIGR02407 189 SSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFF-SFEPAGIEPD---IVCLSKS 264 (412)
T ss_pred cCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhH-HhcccCCCCC---EEEechh
Confidence 2335556666 778887 5788999999999999999999999999887776532 1222222223 3356899
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhh-hhhccCcchHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHh-
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-LNISSDPATFIQGAVPQILEK-TEEEFFSKITDILRETADICCDRL- 333 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L- 333 (422)
++..|+|+|++++++ ++ +.+... ...+.+.+++..+++.+.++. ..+.. ..+++++..+++++.|
T Consensus 265 lg~~G~pigav~~~~--------~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~---l~~~~~~~g~~l~~~l~ 332 (412)
T TIGR02407 265 ISGYGLPLALTLIKP--------EL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDA---FEKAVQRKSEIIQERLD 332 (412)
T ss_pred ccCCccceeEEEEch--------hh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHH
Confidence 644399999999863 23 322211 223446777877777777763 22221 2223333333333333
Q ss_pred ---hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHH
Q 014603 334 ---KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 334 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~ 408 (422)
+.++++. ...+..|.++|+.++... ...++...+ .++||.+.+.... .+.+|++++ .+++++++++
T Consensus 333 ~l~~~~~~~~-~~vrg~Gl~~~l~l~~~~-----~~~~~~~~~-~~~Gv~v~~~~~~--~~~lr~~p~l~~t~~~i~~~~ 403 (412)
T TIGR02407 333 RIVAEYPELI-KQVRGRGLMQGIECGDGD-----LAGKIAKAA-FENGLIIETSGPN--DEVIKLLPPLTIDEETLQQGL 403 (412)
T ss_pred HHHhhCCCce-EeeecceeEEEEEecChH-----HHHHHHHHH-HHCCCEEeccCCC--CCEEEEECCCCCCHHHHHHHH
Confidence 3344322 224566899999996421 133444444 5679999874321 478999998 7899999999
Q ss_pred HHHHHHHHH
Q 014603 409 GRMKAFYDR 417 (422)
Q Consensus 409 ~~l~~~~~~ 417 (422)
++|++++++
T Consensus 404 ~~l~~~l~~ 412 (412)
T TIGR02407 404 DILEQAVEE 412 (412)
T ss_pred HHHHHHHhC
Confidence 999998864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=190.90 Aligned_cols=283 Identities=18% Similarity=0.168 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEeecc
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFDLL 164 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~ 164 (422)
..++++.++++++ .+.++++++++.|++.++. ++++||+|+++.+.|.++.. .+...|++++.++.
T Consensus 49 ~~~le~~la~l~g--------~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~- 118 (378)
T TIGR01329 49 RTALESLLAKLDK--------ADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT- 118 (378)
T ss_pred HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC-
Confidence 5677777887762 2567777888889998776 77999999999999987644 34567888888764
Q ss_pred CCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 165 ~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
.|++.+++.++++++++++++|+||+|.+. ++++|+++|+++|+++|+|+++.. +....++ .++.|
T Consensus 119 ------~d~~~le~~i~~~tklv~le~psnptg~v~---dl~~I~~la~~~g~~vivD~a~~~----~~~~~~l-~~g~D 184 (378)
T TIGR01329 119 ------TDLDKVKAALGPKTKLVLLESPTNPLQKIV---DIRKISEMAHAQNALVVVDNTMMS----PLLCNPL-ELGAD 184 (378)
T ss_pred ------CCHHHHHHhcCcCceEEEEECCCCCCCeee---cHHHHHHHHHHcCCEEEEECCCcc----cccCChh-hcCCc
Confidence 278899999988999999999999999995 589999999999999999999854 2222233 23333
Q ss_pred CCeEEEecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 014603 245 VPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDIL 322 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 322 (422)
+++.|++|.++++ +...|++++++ +++.+++...... ....++...+.+...++. +..+.++.
T Consensus 185 ---i~v~S~tK~l~G~~~~~~G~v~~~~-------~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~t-----l~~R~e~~ 249 (378)
T TIGR01329 185 ---IVYHSATKFLAGHSDVMAGVLAVKG-------EEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKT-----LAIRIEKQ 249 (378)
T ss_pred ---EEEEecceeccCCccceeEEEEeCc-------HHHHHHHHHHHHhcCCcCCHHHHHHHHccCCC-----HHHHHHHH
Confidence 8999999987654 47789998754 3455666655542 234444544443334433 66667777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCC
Q 014603 323 RETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 386 (422)
Q Consensus 323 ~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 386 (422)
.++...+.+.|+++|.+..+..|. .|..+.+.+... ....+++..| +..++.+.-|..
T Consensus 250 ~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~-----~~~~~~~~~L-~~~~i~~s~G~~ 323 (378)
T TIGR01329 250 QENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV-----ALSKRLVEAT-KLFSITVSFGSV 323 (378)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH-----HHHHHHHHhC-cCcccccCCCCC
Confidence 788888888888776553222221 123444555211 1244565655 666777766654
Q ss_pred CC----------------------C-CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 387 VG----------------------L-KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 387 ~~----------------------~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.. . ++.||+|++. |+.+.++..|++++++.
T Consensus 324 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 324 NSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI--EDVDDLISDLDIAFVTA 376 (378)
T ss_pred CceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHhc
Confidence 21 0 3689999997 46777788888887653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=188.13 Aligned_cols=286 Identities=19% Similarity=0.167 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (422)
+...+|+++++++. ..+++++++|+++|+.+++. ++++||+|+++.+.|.+............ .+..
T Consensus 54 p~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~~~~--- 120 (364)
T PRK07269 54 PTRAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG-RFHF--- 120 (364)
T ss_pred ccHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcC-cEEE---
Confidence 45789999999998 45789999999999999984 56899999999999976554333211000 0111
Q ss_pred CCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC
Q 014603 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246 (422)
Q Consensus 167 ~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (422)
.+..|++.+++.++++++++++++|+||+|.+. ++++|+++|+++|+++|+|++|....+ ..++ ..+.|
T Consensus 121 -~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~~----~~pl-~~gaD-- 189 (364)
T PRK07269 121 -TYANTEEELIAAIEEDTDIVYIETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPIY----QRPI-ELGAD-- 189 (364)
T ss_pred -EecCCHHHHHHhcCcCceEEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCccccc----CCch-hhCCc--
Confidence 123588999999988999999999999999884 789999999999999999999754221 1222 23333
Q ss_pred eEEEecCccccCCCCc-eeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 014603 247 VLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRE 324 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 324 (422)
+++.|++|.+++.|- =.|++++++ +++.+++...... ....+++..+.+...|+. +..+.++.++
T Consensus 190 -ivv~S~tK~l~g~~d~~gG~v~~~~-------~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-----L~~r~~~~~~ 256 (364)
T PRK07269 190 -IVLHSATKYLSGHNDVLAGVVVTND-------LELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-----LSLRMERSTA 256 (364)
T ss_pred -EEEecCceeccCCCcccceEEEeCc-------HHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-----HHHHHHHHHH
Confidence 899999999876442 357777754 4566766644432 235577777777666765 7778888899
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHH---------HHhcCeEEecCCCCC-------
Q 014603 325 TADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL---------AKEESVIVLPGITVG------- 388 (422)
Q Consensus 325 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~gi~v~~g~~~~------- 388 (422)
+...+.+.|+++|.+..+.+|..|-.+.+.+... .....+...+ .....+.+.|+..+.
T Consensus 257 na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~-----~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~ 331 (364)
T PRK07269 257 NAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADE-----TRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEV 331 (364)
T ss_pred HHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCH-----HHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHH
Confidence 9999999999998875455454443444444321 0112222221 112244444543221
Q ss_pred -----C-CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 389 -----L-KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 389 -----~-~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
. ++.||+|++. |+.+.++..|+++++
T Consensus 332 r~~~Gi~~~liRlsvGl--E~~~dli~dl~~al~ 363 (364)
T PRK07269 332 RHSYGLTDDLLRLSIGI--EDARDLIADLKQALE 363 (364)
T ss_pred HHhcCCCCCeEEEEecc--CCHHHHHHHHHHHhc
Confidence 1 4689999997 367777777777763
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-24 Score=182.70 Aligned_cols=378 Identities=19% Similarity=0.200 Sum_probs=269.9
Q ss_pred CCCcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCC-CcHHHHHHHHHHhhCCCCCCCCCCC
Q 014603 9 GNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFR-TASVAVDAIVHSVRSARFNCYSSTV 87 (422)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~ 87 (422)
.+||+. ++...+++.|-++.+.++++ ..+..|||+.|...+..+-| ..|.|++|=.+.+.....-.|.|..
T Consensus 24 ~~s~~s----~V~maPpDpILGVTeAfk~D----~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~ 95 (427)
T KOG1411|consen 24 ASSWWS----HVEMAPPDPILGVTEAFKKD----PNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPIT 95 (427)
T ss_pred ccchhh----cCCCCCCCCcccHHHHHhcC----CCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhcccc
Confidence 345554 57889999999999988876 46778999999876545544 4778888877766654455899999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEE--ecCHHHHHHHHHHHh--cCCCCEEEecCCCccchHHHHhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYL--TLGCTQAIEVILTVL--ARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (422)
|++++.+..++++-.....-+..++|+. |-+||.|+.+....+ .-++..|.+++|+|.+...+.+..|+.+..+..
T Consensus 96 Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrY 175 (427)
T KOG1411|consen 96 GLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRY 175 (427)
T ss_pred chHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeee
Confidence 9999999999998543333345566754 456888888876655 346889999999999999999999999877776
Q ss_pred cCCCCcccCHHHHHHhhcCCc-eEEEEe--CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC--CCCc
Q 014603 164 LPAKGWEVDLDAVEALADENT-VALVII--NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP--FVPM 238 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~-~~i~i~--~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~--~~~~ 238 (422)
......++|.+.+.+-+..-+ ..++++ ..|||||+-++.++|++|.++.++.+.+-+.|.+|.++.-+... ...+
T Consensus 176 yd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~av 255 (427)
T KOG1411|consen 176 YDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAV 255 (427)
T ss_pred ccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHH
Confidence 555556788877655444321 223333 34999999999999999999999999999999999987643221 1112
Q ss_pred cccCCC-CCeEEEecCccccCCCCceeEEE--EeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch--H
Q 014603 239 GVFGSI-VPVLTLGSISKRWIVPGWRLGWL--VTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE--E 312 (422)
Q Consensus 239 ~~~~~~-~~~i~i~s~sK~~~~~G~r~G~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~--~ 312 (422)
..+..+ .++++..|+.|.+|+.|-|+|.+ ++.+.+ .. ..+..+++... ...++|+.....++..+|.+.. .
T Consensus 256 R~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad-~A--~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~ 332 (427)
T KOG1411|consen 256 RLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDAD-EA--KRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKN 332 (427)
T ss_pred HHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHH-HH--HHHHHHHHHHhcccccCCCccchhhhhhccCChHHHH
Confidence 222222 34788899999999999999997 443311 11 12333333333 2456788888888888888743 4
Q ss_pred HHH---HHHHHHHHHHHHHHHHHhhcC--CC-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCC
Q 014603 313 EFF---SKITDILRETADICCDRLKEI--PC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 386 (422)
Q Consensus 313 ~~~---~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 386 (422)
+|+ +....++...++.+.+.|+.. ++ |. .+..+-|+|.+..+. .+.++.+.+++.|+++.-.
T Consensus 333 ~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~-hI~~QIGMF~fTgl~----------peQv~~l~ke~~iYmT~dG- 400 (427)
T KOG1411|consen 333 QWLGEVKGMADRIISMRQQLFDALEKEGSPGNWS-HITKQIGMFCFTGLN----------PEQVDWLTKEYHIYLTKDG- 400 (427)
T ss_pred HHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHH-HHHHhhheeeecCCC----------HHHHHHHHhhheeeeccCc-
Confidence 443 444567778888888888874 22 33 334566899887773 3567888899999987532
Q ss_pred CCCCCeEEEEec-cChHHHHHHHHHHHHHHH
Q 014603 387 VGLKDWLRITFA-VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 387 ~~~~~~iRis~~-~~~~~l~~~~~~l~~~~~ 416 (422)
|||++ .+...+..+.++|.++.+
T Consensus 401 -------RiS~aG~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 401 -------RISMAGLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred -------eEeeccccccCCcccchhhHhHhc
Confidence 99997 677788888888777654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=191.20 Aligned_cols=159 Identities=24% Similarity=0.207 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~ 162 (422)
....++++.++++++ .+..++++||++|+..++.+++++||+|+++.+.|++. ...+...|++++.++
T Consensus 57 p~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~ 128 (418)
T TIGR01326 57 PTTDVLEQRIAALEG--------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVD 128 (418)
T ss_pred hhHHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEEC
Confidence 346789999999982 35688999999999999999999999999999998654 344566788888776
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||+|.+. ++++|.++|+++|+++|+|++|+... ...++ ..+
T Consensus 129 ~-------~d~~~l~~~l~~~t~~V~le~p~NPtg~v~---dl~~I~~la~~~~i~livD~t~~~~~----~~~~l-~~g 193 (418)
T TIGR01326 129 P-------DDPEEFEKAIDENTKAVFAETIGNPAINVP---DIEAIAEVAHAHGVPLIVDNTFATPY----LCRPI-DHG 193 (418)
T ss_pred C-------CCHHHHHHhcCcCCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCchhh----cCCch-hcC
Confidence 3 178999999988899999999999999985 57888999999999999999987421 11111 122
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
..+++.|++|.++++|+|+|+++++.
T Consensus 194 ---~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 194 ---ADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred ---CeEEEECccccccCCccceEEEEEec
Confidence 34999999999999999999999864
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-22 Score=186.65 Aligned_cols=301 Identities=19% Similarity=0.206 Sum_probs=202.4
Q ss_pred HHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCCccch
Q 014603 69 DAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPGFPYY 147 (422)
Q Consensus 69 ~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~ 147 (422)
+++.+.+..+. |.......++++.++++++ .+++++++||++|+..++.++ .++||+|+++.++|+.+
T Consensus 3 ~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~ 71 (352)
T cd00616 3 EAVEEVLDSGW---LTLGPKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVAT 71 (352)
T ss_pred HHHHHHHHcCC---ccCCHHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHH
Confidence 44555555432 2333457899999999983 356888899999999999998 58999999999999999
Q ss_pred HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc
Q 014603 148 EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227 (422)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~ 227 (422)
...+...|.+++.+++++ .++.+|++.+++.++++++++++++ ++|... ++++|.++|+++|+++|+|++|+.
T Consensus 72 ~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~---~~~~i~~l~~~~~i~li~D~a~~~ 144 (352)
T cd00616 72 ANAILLLGATPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPVH---LYGNPA---DMDAIMAIAKRHGLPVIEDAAQAL 144 (352)
T ss_pred HHHHHHcCCeEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcC---CHHHHHHHHHHcCCeEEEECCCCC
Confidence 888889999999998854 3567899999999888888888764 688874 578888889999999999999985
Q ss_pred ccc-CCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc------------
Q 014603 228 LAF-GNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS------------ 292 (422)
Q Consensus 228 ~~~-~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 292 (422)
... .+. .+.... .+.+.|++ |++ ++.+.|++++++ +++.++++......
T Consensus 145 g~~~~~~---~~~~~~----d~~~~S~~~~K~~--~~~~gg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (352)
T cd00616 145 GATYKGR---KVGTFG----DAGAFSFHPTKNL--TTGEGGAVVTND-------EELAERARLLRNHGRDRDRFKYEHEI 208 (352)
T ss_pred CCeECCE---EcccCc----ceeEEcCCCCCCC--cccCceEEEECC-------HHHHHHHHHHHHcCCCCCCCccccce
Confidence 321 111 111111 25677766 986 333458888754 35666655432211
Q ss_pred ----cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----CceEEEEecCcccccCCC
Q 014603 293 ----SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----GSMFVMVKLNYSLLEGIN 364 (422)
Q Consensus 293 ----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~ 364 (422)
...+.+..+.+... ...+++..++.+++.+++.+.|++++++.+...+. ....+.+.++.. ...
T Consensus 209 ~~~~~~~~~~~aa~~~~~-----l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 280 (352)
T cd00616 209 LGYNYRLSEIQAAIGLAQ-----LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE---AGE 280 (352)
T ss_pred eeeccCcCHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc---CCC
Confidence 01122222222222 23467777888899999999999988887442222 112333344320 012
Q ss_pred CHHHHHHHHHHhcCeEEecCCCCCC-----------------------CCeEEEEec--cChHHHHHHHHHHH
Q 014603 365 SDMEFALKLAKEESVIVLPGITVGL-----------------------KDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 365 ~~~~~~~~l~~~~gi~v~~g~~~~~-----------------------~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
+..++...| +++||.+........ .+.+|+++. ++++|++.+++.|+
T Consensus 281 ~~~~v~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 281 SRDELIEAL-KEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CHHHHHHHH-HHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 456666665 566997653221100 267999998 78999999988763
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=183.78 Aligned_cols=309 Identities=18% Similarity=0.258 Sum_probs=200.0
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCC
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRP 142 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~ 142 (422)
.++..+++.+.+..+.. ++......++++.+++++ ..+++++|+|+++|+.+++.++ +++||+|+++.+
T Consensus 10 ~~~e~~a~~~~~~~~~~--~~~g~~~~~~e~~la~~~--------g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~ 79 (376)
T TIGR02379 10 TGQELEYIAEAISEGKL--SGDGPFSRRCETWLENRT--------GTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSY 79 (376)
T ss_pred CHHHHHHHHHHHHcCCc--cCCcHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCC
Confidence 35667888888876433 222222356666666665 3468999999999999999887 799999999999
Q ss_pred CccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEc
Q 014603 143 GFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222 (422)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 222 (422)
+|.++...+...|++++.+++++ +++.+|++.+++.+++++++++ |+||+|... ++++|.++|+++|++||+|
T Consensus 80 t~~~~~~~~~~~G~~~v~vd~d~-~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~---d~~~I~~la~~~~i~vIeD 152 (376)
T TIGR02379 80 TFVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTKAIV---PVHYAGVAC---DMDTIMALANKHQLFVIED 152 (376)
T ss_pred CcHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCCCCcc---CHHHHHHHHHHCCCEEEEE
Confidence 99999888888999999999875 4477999999999988888876 667889885 5778899999999999999
Q ss_pred ccccccc-cCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhcc------
Q 014603 223 EVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS------ 293 (422)
Q Consensus 223 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 293 (422)
++|+.+. +.+... ..+. .+.++||+ |.+ .+|.+.|++++++ +++.++++.......
T Consensus 153 aa~~~g~~~~~~~~---g~~~----~~~~fSf~~~K~l-~~g~~gG~v~~~~-------~~~~~~~~~~~~~g~~~~~~~ 217 (376)
T TIGR02379 153 AAQGVMSTYKGRAL---GSIG----HLGTFSFHETKNY-TSGGEGGALLIND-------QAFIERAEIIREKGTNRSQFF 217 (376)
T ss_pred CccccCCccCCccc---CCCC----CEEEEeCCCCCcC-cccCCceEEEECC-------HHHHHHHHHHHHhCCCCcccc
Confidence 9998754 444322 2221 13444443 664 5677789999875 567777766543210
Q ss_pred ----------------CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CCCCCCCCCc----eE
Q 014603 294 ----------------DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP--C-ITCPKKPEGS----MF 350 (422)
Q Consensus 294 ----------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~g----~~ 350 (422)
..+.+..+.+...| ..+++..++-++..+...+.|++++ + +.....|.+. .+
T Consensus 218 ~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL-----~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 292 (376)
T TIGR02379 218 RGEVDKYTWRDIGSSYLPSELQAAYLWAQL-----EQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHM 292 (376)
T ss_pred ccCCCcceeeeecccCCccHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEE
Confidence 11111222222223 3355555555666666777776653 1 2211112221 23
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC----------CC------------CCeEEEEec--cChHHHHH
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV----------GL------------KDWLRITFA--VEPSALED 406 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~----------~~------------~~~iRis~~--~~~~~l~~ 406 (422)
+++.++.. .+..++...| +++||.+.++... .. ...+.+-+. .++++++.
T Consensus 293 ~~i~~~~~-----~~r~~l~~~L-~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~ 366 (376)
T TIGR02379 293 FYIKLKDE-----DDRNELIKYL-KEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQAR 366 (376)
T ss_pred EEEEECCc-----CCHHHHHHHH-HHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHH
Confidence 34555431 1345565555 6779987743210 00 123444443 67899999
Q ss_pred HHHHHHHHH
Q 014603 407 GLGRMKAFY 415 (422)
Q Consensus 407 ~~~~l~~~~ 415 (422)
.++.|++++
T Consensus 367 i~~~i~~~~ 375 (376)
T TIGR02379 367 VIQTICDYL 375 (376)
T ss_pred HHHHHHHHh
Confidence 999998764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-22 Score=187.33 Aligned_cols=214 Identities=18% Similarity=0.140 Sum_probs=153.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~ 163 (422)
...+++++++++.+ .+ . .+++++|+.++..++. ++++||+|+++++.|++.. ..++..|++++.++.
T Consensus 55 ~~~~le~~lA~l~g------~~-~-~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 55 TREALEDIIAELEG------GT-K-GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred hHHHHHHHHHHHhC------CC-C-eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 46788999999983 23 3 4555666889988886 6789999999999997532 445568888888764
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.|++.+++.++++++++++++|+||||.+. ++++|.++|+++|+++|+|++|..... ..++ .++.
T Consensus 126 -------~d~~~l~~~l~~~tklV~l~~p~NptG~~~---dl~~I~~la~~~g~~vvvD~a~~~~~~----~~~~-~~g~ 190 (390)
T PRK08064 126 -------TNLEEVAQNIKPNTKLFYVETPSNPLLKVT---DIRGVVKLAKAIGCLTFVDNTFLTPLL----QKPL-DLGA 190 (390)
T ss_pred -------CCHHHHHHhcCCCceEEEEECCCCCCcEec---cHHHHHHHHHHcCCEEEEECCCCcccc----cCch-hhCC
Confidence 267899999988999999999999999995 678888899999999999999875321 1122 2333
Q ss_pred CCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHHhhhhhcc-CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS-DPATFIQGAVPQILEKTEEEFFSKITDI 321 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 321 (422)
.+++.|++|.+++ +|...|++++.+ +++.++++......+ ..++...+.+..-++ .+..+.++
T Consensus 191 ---Divv~S~tK~~~G~~~~laG~~v~~~-------~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~-----tl~~R~~~ 255 (390)
T PRK08064 191 ---DVVLHSATKFLAGHSDVLAGLAVVKD-------EELAQKLYFLQNSFGAVLGVQDCWLVLRGLK-----TLHVRLEH 255 (390)
T ss_pred ---cEEEeecceeccCCccceeEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHcccC-----cHHHHHHH
Confidence 3889999999864 345678777653 467777776665332 333333333222222 25667777
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q 014603 322 LRETADICCDRLKEIPCIT 340 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~ 340 (422)
..++...+.+.|+++|.+.
T Consensus 256 ~~~~a~~la~~L~~~~~v~ 274 (390)
T PRK08064 256 SSETANKIALYLQEHPKVQ 274 (390)
T ss_pred HHHHHHHHHHHHhcCCCcc
Confidence 7888888888888876543
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=171.14 Aligned_cols=370 Identities=18% Similarity=0.176 Sum_probs=260.6
Q ss_pred hhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCC-cHHHHHHHHHHhhCCC-CCCCCCCCCCHHHHHHHHH
Q 014603 21 KTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRT-ASVAVDAIVHSVRSAR-FNCYSSTVGILPARRAIAD 98 (422)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~-~~~v~~a~~~~~~~~~-~~~y~~~~g~~~lr~~ia~ 98 (422)
...++..+..+...+.+. ..+..+||++|...+..+.|+ .|.|.++=.....+.. ...|.|..|++.++...++
T Consensus 10 ~~a~p~~vf~~~~~y~~d----~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~e 85 (410)
T KOG1412|consen 10 PVAPPIEVFKLNASYGED----LDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATE 85 (410)
T ss_pred ccCChHHHHhhHHHhccc----CCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHH
Confidence 334444455555444443 356679999998665555554 4555544433333322 3478898999999999999
Q ss_pred HHhhcCCCCCCCCCEE--EecCHHHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCC-CeEEEeeccCCCCcccCH
Q 014603 99 YLNRDLPYKLSPDDVY--LTLGCTQAIEVILTVLA--RPGANILLPRPGFPYYEARATHSH-LEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 99 ~l~~~~~~~~~~~~i~--~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~d~ 173 (422)
.+-......+..++++ -+-|||.|+.+....+. -...+|.+..|+|.....+++..| ..+..++....+.-.+|.
T Consensus 86 l~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~ 165 (410)
T KOG1412|consen 86 LLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDL 165 (410)
T ss_pred HhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecH
Confidence 8865444445556653 45678999988776552 245689999999999999999999 457777776666667899
Q ss_pred HHHHHhhcC--CceEEEEeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccc---cCCC-CC
Q 014603 174 DAVEALADE--NTVALVIINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV---FGSI-VP 246 (422)
Q Consensus 174 ~~l~~~~~~--~~~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~---~~~~-~~ 246 (422)
+.+...++. ....+++..+ +||||.-++.|+|.+|+++.++.+.+.+.|-+|.++.-++.. .+..+ +..+ ..
T Consensus 166 e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~-~DawAiR~fV~~g~e 244 (410)
T KOG1412|consen 166 EGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLD-ADAWAIRYFVEQGFE 244 (410)
T ss_pred HHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCcc-ccHHHHHHHHhcCCe
Confidence 988876643 3344555555 999999999999999999999999999999999987654322 12111 1111 23
Q ss_pred eEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh----hh-hhccCcchHHHHHHHHHHhhch--HHH---HH
Q 014603 247 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS----FL-NISSDPATFIQGAVPQILEKTE--EEF---FS 316 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~a~~~~l~~~~--~~~---~~ 316 (422)
++++.||+|.||+.+-|+|-+..--+ ++..+..+.. .. ...+.|+.....++.+.|.... ++| ++
T Consensus 245 ~fv~QSFaKNfGlYneRvGnltvv~~-----n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik 319 (410)
T KOG1412|consen 245 LFVCQSFAKNFGLYNERVGNLTVVVN-----NPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIK 319 (410)
T ss_pred EEEEhhhhhhcccccccccceEEEec-----ChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHH
Confidence 78999999999999999998744211 1344444433 32 2456888889999999998744 444 44
Q ss_pred HHHHHHHHHHHHHHHHhhcC--CC-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeE
Q 014603 317 KITDILRETADICCDRLKEI--PC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL 393 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 393 (422)
....++++.|..|++.|..+ || |. .+..+.|+|-+..+. + ..++.|.+++.|++.+..
T Consensus 320 ~MssRI~~MR~aLrd~L~aL~TPGtWD-HI~~QiGMFSyTGLt---------p-~qV~~li~~h~vyLl~~G-------- 380 (410)
T KOG1412|consen 320 TMSSRIKKMRTALRDHLVALKTPGTWD-HITQQIGMFSYTGLT---------P-AQVDHLIENHKVYLLSDG-------- 380 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHhhccceeecCCC---------H-HHHHHHHHhceEEEecCC--------
Confidence 45567888888888888876 55 44 446677988886663 3 356788889999988754
Q ss_pred EEEec-cChHHHHHHHHHHHHHHHHhc
Q 014603 394 RITFA-VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 394 Ris~~-~~~~~l~~~~~~l~~~~~~~~ 419 (422)
||+++ .....++...++|.++++.+.
T Consensus 381 RInisGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 381 RINISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred cEeeeccccccHHHHHHHHHHHHHhhc
Confidence 99998 677889999999999888764
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=177.34 Aligned_cols=325 Identities=16% Similarity=0.194 Sum_probs=219.0
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVIL 127 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~ 127 (422)
++|.+.... .+.|+++++|.+.-. .....|+..+....+++.+++.+. .+.++|+++||+++.+++
T Consensus 2 ~~f~SDn~~-----g~~~~m~eam~~a~~-~~~~~YG~D~~~~~~e~~~ae~~g--------~~a~~Fv~sGT~aN~lal 67 (342)
T COG2008 2 IDFRSDNVA-----GPTPEMREALAAANA-VGDDVYGEDPTTNALEQRIAELFG--------KEAALFVPSGTQANQLAL 67 (342)
T ss_pred CccccCccC-----CCCHHHHHHHHhccc-cCCCCCCCCHHHHHHHHHHHHHhC--------CceEEEecCccHHHHHHH
Confidence 456555433 467899999998753 234579988888899999999882 378999999999999999
Q ss_pred HHhcCCCCEEEecCCCccchHH--HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcccc
Q 014603 128 TVLARPGANILLPRPGFPYYEA--RATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNV 199 (422)
Q Consensus 128 ~~l~~~gd~Vl~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG~~ 199 (422)
.+.++||+.|++..-.|-.... ....++ +...+++.+..+..+++++++..+.+ .+..+++.+.+|..|++
T Consensus 68 ~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtV 146 (342)
T COG2008 68 AAHCQPGESVICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTV 146 (342)
T ss_pred HHhcCCCCeEEEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCcee
Confidence 9999999999999988854432 122222 23344455556678999999997653 34566666666688999
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccc--cccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDH--LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ 277 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~ 277 (422)
+|.+++++|.++|+++|+.|+.|.+--. +...+ .+...+...-+ ++..++||..+.+ +|.++..+
T Consensus 147 y~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~~~D-~v~~~~tK~g~~~---~gAiv~gn------ 213 (342)
T COG2008 147 YPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKSYVD-SVSFCLTKGGGAP---VGAIVFGN------ 213 (342)
T ss_pred cCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHhhCC-EEEEecccCCcce---eeeEEEcC------
Confidence 9999999999999999999999999532 22222 22222222112 4555789996445 48887765
Q ss_pred chhHHHHHHhhhhhcc---CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEe
Q 014603 278 DSGIVDSIKSFLNISS---DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVK 354 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~ 354 (422)
++++++++..+-..+ .-..+..+....+|++ ........+-.+....|.+.|...||+.+. .|...+.+++.
T Consensus 214 -~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~---~~~~~~~~Han~mA~~La~~~~~~~G~~~~-~~~~tN~vf~~ 288 (342)
T COG2008 214 -RDFAKRARRWRKRAGGLMRKARFLAAQGLYALED---DVWRLAADHANAMAARLAEGLEAKPGVKLA-FPVETNMVFVR 288 (342)
T ss_pred -HHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhhhcCCceec-cCCcccEEEEE
Confidence 567777765543222 2234445555555654 222333344455688889999988898844 66667888898
Q ss_pred cCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 355 LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
++.... +.... ...+...|+.+.++. ..+|+..+ ++++++++++..++.++
T Consensus 289 l~~~~i----~~l~~-~~~~~~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 289 LPESAI----EALRL-AGALFYRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred CChHHH----HHHHh-hchhheeeeeccCCC-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 975211 11111 112233355554432 46899887 88999999999988764
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-22 Score=187.71 Aligned_cols=228 Identities=21% Similarity=0.193 Sum_probs=161.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhh----CCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATH----SHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~ 162 (422)
+...+|++.++++.+ .+..+++++|++|+..++.+++++||+|+++.+.|++....... .|+++..++
T Consensus 58 pt~~~Le~~lA~l~g--------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d 129 (425)
T PRK06084 58 PTNDVLEQRVAALEG--------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA 129 (425)
T ss_pred chHHHHHHHHHHHhC--------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence 346788999999872 34567888999999999999999999999999999865444332 344544443
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||+|.+++ +++|.++|+++|+++|+|++|+... ...++ .++
T Consensus 130 ~-------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~----~~~p~-~~g 194 (425)
T PRK06084 130 H-------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPV----LCRPF-EHG 194 (425)
T ss_pred C-------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccc----cCChh-hcC
Confidence 1 3889999999888999999999999999975 7888899999999999999997422 11122 233
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc---------------------h-----hHHHHHH-h-hhhhccC
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD---------------------S-----GIVDSIK-S-FLNISSD 294 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~---------------------~-----~~~~~~~-~-~~~~~~~ 294 (422)
.| +++.|++|.++++|.++|.+++.++...... + ....... . .......
T Consensus 195 aD---ivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 271 (425)
T PRK06084 195 AD---IVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAA 271 (425)
T ss_pred CC---EEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCC
Confidence 33 9999999999999999888777432100000 0 0000000 0 1123345
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 295 PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 295 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
.++...+.+..-|+. +..+.++..++...+.+.|+++|.+..+.+|
T Consensus 272 l~~~~a~l~lrgl~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP 317 (425)
T PRK06084 272 LSPFNAFLILQGLET-----LALRMERHTENALKVARYLQQHPQVAWVKYA 317 (425)
T ss_pred CCHHHHHHHHcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 566666666655655 6777888889999999999998876534343
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-22 Score=186.09 Aligned_cols=229 Identities=17% Similarity=0.132 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~ 162 (422)
+...+|++.++++.+ .+..+.++||++|+.+++.+++++||+|+++.++|.+.... ....|+++..+.
T Consensus 61 Ptv~~lE~~la~leg--------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd 132 (432)
T PRK06702 61 PTLAAFEQKLAELEG--------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFN 132 (432)
T ss_pred cHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEEC
Confidence 346889999999873 34678899999999999999999999999999999866554 567899888774
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. ..|++.+++++++++++|++.+|+||++.++ ++++|+++|+++|+++|+|+++.. +... ....++
T Consensus 133 ~------~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~---Di~~I~~iA~~~gi~livD~T~~t----P~~~-~pl~~G 198 (432)
T PRK06702 133 P------NLTADEIVALANDKTKLVYAESLGNPAMNVL---NFKEFSDAAKELEVPFIVDNTLAT----PYLC-QAFEHG 198 (432)
T ss_pred C------CCCHHHHHHhCCcCCeEEEEEcCCCcccccc---CHHHHHHHHHHcCCEEEEECCCCc----hhhC-ChhhcC
Confidence 3 2688999999999999999999999999995 589999999999999999999852 1111 112334
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEe----------eCCCCcc--------------cchhHHH--HHHhhhhhccCcc
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVT----------SDPNGIL--------------QDSGIVD--SIKSFLNISSDPA 296 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~----------~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~ 296 (422)
.+ |++.|+||.+++.+--+|-+++ ++..... .++++.. +......+....+
T Consensus 199 AD---Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s 275 (432)
T PRK06702 199 AN---IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMS 275 (432)
T ss_pred CC---EEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCC
Confidence 43 9999999965544333332222 1111000 0011111 1112223345778
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 297 TFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 297 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++..+.+...|+. +..+.++..++...+.+.|+++|.+..+.+|
T Consensus 276 p~~a~l~~rgL~T-----l~lR~~r~~~Na~~la~~L~~~p~V~~V~yP 319 (432)
T PRK06702 276 PFNAYISNIGLET-----LHLRMERHSENALAVAKWLADHERIEWVNYP 319 (432)
T ss_pred HHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECC
Confidence 8888888777875 6667777789999999999988876544344
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=183.40 Aligned_cols=287 Identities=17% Similarity=0.138 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH---HHHhhCCCeEEEeeccC
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE---ARATHSHLEVRHFDLLP 165 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~ 165 (422)
..++++.++++.+ .+..+++++|++|+..++.+++++||+|+++++.|++.. ..+...|++++.++.
T Consensus 49 ~~~lE~~la~leg--------~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~-- 118 (397)
T PRK05939 49 TAALEAKITKMEG--------GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDA-- 118 (397)
T ss_pred HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECC--
Confidence 4488999999873 234566667799999999999999999999999987543 345667888887764
Q ss_pred CCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 166 ~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
.|++.+++.++++++++++++|+||+|.+ .++++|+++|+++|+++|+|++|.... .. ....++.
T Consensus 119 -----~d~e~l~~~l~~~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~----~~-~~~~~ga-- 183 (397)
T PRK05939 119 -----TDVQNVAAAIRPNTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPW----LF-RPKDVGA-- 183 (397)
T ss_pred -----CCHHHHHHhCCCCCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCccccc----cc-CccccCC--
Confidence 37899999999999999999999999999 689999999999999999999986421 11 1112232
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCccc-chhH-------------HHHHHhhh--hhccCcchHHHHHHHHHHhh
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ-DSGI-------------VDSIKSFL--NISSDPATFIQGAVPQILEK 309 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~-~~~~-------------~~~~~~~~--~~~~~~~~~~~~a~~~~l~~ 309 (422)
.+++.|+||.+++.|.++|+++..+...... ...+ +..+.... ......++...+.+..-++.
T Consensus 184 -Divv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~t 262 (397)
T PRK05939 184 -SLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAET 262 (397)
T ss_pred -EEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCc
Confidence 3899999999999999999987743210000 0000 11121111 12234555555555555554
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHH
Q 014603 310 TEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKL 373 (422)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l 373 (422)
+..+.++..++...+.+.|+.+|.+..+.+|. .|..+.+.+.. .. ...++
T Consensus 263 -----l~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~--------~~-~~~~f 328 (397)
T PRK05939 263 -----LALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD--------GI-DCFDF 328 (397)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC--------HH-HHHHH
Confidence 56666777778889999999888765344442 24455556642 11 22333
Q ss_pred HHhcCeE-Eec--CCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 374 AKEESVI-VLP--GITV----------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 374 ~~~~gi~-v~~--g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+++-.+. ..+ |... +. ++.||+|++.+ +.+.+++.|.+++++
T Consensus 329 ~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlE--d~~dLi~dl~~Al~~ 396 (397)
T PRK05939 329 LNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGIE--DEADLIADFEQALDA 396 (397)
T ss_pred HHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCCC--CHHHHHHHHHHHHhc
Confidence 3433332 111 1100 00 36899999973 677778888888753
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=181.26 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=191.8
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCeEEEeecc
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLEVRHFDLL 164 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~ 164 (422)
...|++.++++.+ .+.+++++|+++|+..++.+++++||+|+++++.|+++... ....|+++..++.
T Consensus 52 ~~~lE~~lA~l~g--------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~- 122 (377)
T TIGR01324 52 HFALQDAMCELEG--------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP- 122 (377)
T ss_pred HHHHHHHHHHHhC--------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC-
Confidence 4699999999872 45899999999999999999999999999999999876543 3456777665532
Q ss_pred CCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 165 ~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
. +.+.+++.++++++++++++|+||+|.. .++++|+++|+++|+++|+|++|+.... ..++ .++.|
T Consensus 123 -~-----~~e~l~~~i~~~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a~g~~----~~pl-~~gaD 188 (377)
T TIGR01324 123 -L-----IGEDIATLIQPNTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWAAGLL----FKPL-EHGVD 188 (377)
T ss_pred -C-----CHHHHHHhcCCCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCccccc----cCcc-ccCce
Confidence 1 2278888888899999999999999888 7899999999999999999999986321 1122 23333
Q ss_pred CCeEEEecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 014603 245 VPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDIL 322 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 322 (422)
+++.|++|.+++. +...|+++++ ++..+++..... .....++...+.+...++. +..+.++.
T Consensus 189 ---ivv~S~tK~l~G~~d~~gG~v~~~--------~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t-----l~~R~~~~ 252 (377)
T TIGR01324 189 ---ISIQAGTKYLVGHSDIMIGTVVAN--------ARTWDQLREHSYLMGQMVDADDAYTTLRGLRT-----LGVRLKQH 252 (377)
T ss_pred ---EEEecCceeccCCCCceEEEEEeC--------HHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh-----HHHHHHHH
Confidence 8999999998764 4677888764 345555553332 2334566666665555553 55567777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCC
Q 014603 323 RETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 386 (422)
Q Consensus 323 ~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 386 (422)
.++...+.+.|+++|.+.-+.+|. .|..+.++++... ......+++.+ +-.++.+.-|..
T Consensus 253 ~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~---~~~~~~~~~~l-~~~~~~~slG~~ 328 (377)
T TIGR01324 253 QESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT---QKQVHAFLDHL-QLFGLGYSWGGY 328 (377)
T ss_pred HHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC---HHHHHHHHHhC-CcceEeccCCCc
Confidence 788888888999887664333442 2334455564210 00123333333 322332221211
Q ss_pred C------C-------------CCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 387 V------G-------------LKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 387 ~------~-------------~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
. . .++.||+|++.+ +.+.+++.|.++++.
T Consensus 329 ~sl~~~~~~~~~~~~~~~~~~~~~liR~svGlE--~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 329 ESLALCNQPELGHRPNIKRNLEGPLIRVHIGLE--NVDDLKADLKAGFEA 376 (377)
T ss_pred cceeecCCCCCCHHHHHhccCCCCEEEEEeCCC--CHHHHHHHHHHHHhc
Confidence 0 0 135799999973 566777777777653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-21 Score=181.78 Aligned_cols=315 Identities=15% Similarity=0.132 Sum_probs=204.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCC
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPG 143 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~ 143 (422)
++-.+++.+.+..+.. .++ ....+++++++++++ .+++++++|+|+|+.+++.++ +++||+|+++.++
T Consensus 14 ~~e~~~~~~~l~~~~~-~~g--~~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~ 82 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-TTG--PKNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLT 82 (379)
T ss_pred HHHHHHHHHHHHcCCc-cCC--HhHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCc
Confidence 4557788887765432 233 347899999999993 246888999999999999998 7999999999999
Q ss_pred ccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcc
Q 014603 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223 (422)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~ 223 (422)
|.++...+...|++++.+++++ +++.+|++.+++.+++++++++ |.|++|... ++++|.++|+++|+++|+|+
T Consensus 83 ~~~~~~~~~~~G~~~v~vd~~~-~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~---d~~~i~~~a~~~gi~vi~D~ 155 (379)
T PRK11658 83 WVSTLNMIVLLGATPVMVDVDR-DTLMVTPEAIEAAITPRTKAII---PVHYAGAPA---DLDAIRAIGERYGIPVIEDA 155 (379)
T ss_pred HHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcccCCeEEE---EeCCCCCcC---CHHHHHHHHHHcCCeEEEEC
Confidence 9999888889999999999864 4467899999999988888876 556789874 67888999999999999999
Q ss_pred cccc-cccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccC--------
Q 014603 224 VYDH-LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSD-------- 294 (422)
Q Consensus 224 ~~~~-~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 294 (422)
+|+. ..+.|. .+...+ +.+.||++...+++.+.|++++++ +++.++++........
T Consensus 156 a~a~g~~~~~~---~~g~~g-----~~~~Sf~~~K~l~~g~GG~v~~~~-------~~~~~~~~~~~~~G~~~~~~~~~~ 220 (379)
T PRK11658 156 AHAVGTYYKGR---HIGARG-----TAIFSFHAIKNITCAEGGLVVTDD-------DELADRLRSLKFHGLGVDAFDRQT 220 (379)
T ss_pred CCccCCeECCe---ecCCCC-----CEEEeCCCCCcCcccCceEEEECC-------HHHHHHHHHHHHcCCCcchhhhhc
Confidence 9985 223332 122222 235566644444556678888764 4566666543321100
Q ss_pred ------------cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC----ceE-EEEecCc
Q 014603 295 ------------PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG----SMF-VMVKLNY 357 (422)
Q Consensus 295 ------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----g~~-~~~~~~~ 357 (422)
....-+..+.+++.......+++..++.+++.+.+.+.|++++... +..|.. .++ +.+.++.
T Consensus 221 ~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 299 (379)
T PRK11658 221 QGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQP-LSLPAWPHQHAWHLFIIRVDE 299 (379)
T ss_pred ccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-CcCCCCCCceeEEEEEEEECC
Confidence 0000011112222222234577778888888888999998875433 212221 112 2233432
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCC-------C---------CC-----CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGIT-------V---------GL-----KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-------~---------~~-----~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
.. .+ .+..++...| +++||.+..... | .. ...+-+-+. .++++++..++.|+++
T Consensus 300 ~~-~~-~~r~~~~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 300 ER-CG-ISRDALMEAL-KERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQI 376 (379)
T ss_pred cc-cc-CCHHHHHHHH-HHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 10 01 1355666666 567987653210 0 00 233444433 6789999999999887
Q ss_pred HH
Q 014603 415 YD 416 (422)
Q Consensus 415 ~~ 416 (422)
+.
T Consensus 377 ~~ 378 (379)
T PRK11658 377 AG 378 (379)
T ss_pred Hh
Confidence 53
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=185.66 Aligned_cols=312 Identities=13% Similarity=0.099 Sum_probs=209.2
Q ss_pred CCCcHHHHHHHHHHhhCCC---CCCCCCC-------CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC-HHHHHHHHHHH
Q 014603 61 FRTASVAVDAIVHSVRSAR---FNCYSST-------VGILPARRAIADYLNRDLPYKLSPDDVYLTLG-CTQAIEVILTV 129 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~---~~~y~~~-------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g-~~~a~~~~~~~ 129 (422)
.+.|+.|++++.+.+.+.. -..|... .-+.+.|+.++++++. -++++++|++| +|++++.++.+
T Consensus 8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~-----~~~~~vvf~~gs~T~a~~~~~~~ 82 (355)
T cd00611 8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNI-----PDNYKVLFLQGGATGQFAAVPLN 82 (355)
T ss_pred CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCC-----CCCceEEEEcCCchHHHHHHHHh
Confidence 3678999999999874311 0111111 2356778888888831 14568999877 99999999999
Q ss_pred hcC---CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC-HHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 130 LAR---PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD-LDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 130 l~~---~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
+.. +||.|++ .+..+.+...++..|.+++.++.+...++ .+ ++..+..++++++++.+++..|.||+.++
T Consensus 83 l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~---- 156 (355)
T cd00611 83 LLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLAPDAAYVHYCSNETIHGVEFD---- 156 (355)
T ss_pred cCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCCCCCCEEEEeCCcccccEEcc----
Confidence 987 4455544 22223334577888988888886432222 13 23333445678999999999999999742
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSI 285 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 285 (422)
++++.+|+++++|.+++. |..+.++..++ +.+.|.+|.||.+| +|++++++ ++.+++
T Consensus 157 ----~i~~~~g~~~~VDa~qs~----g~~~idv~~~~-----~~~ss~~K~lGP~G--~g~l~~~~--------~~~~~~ 213 (355)
T cd00611 157 ----EVPDTGGVPLVADMSSNI----LSRPIDVSKFG-----VIYAGAQKNLGPAG--VTVVIVRK--------DLLGKA 213 (355)
T ss_pred ----eecccCCCeEEEEccccc----cCCCCCHHHhC-----EEEeecccccCCCc--eEEEEECH--------HHHhhc
Confidence 233458999999999987 54455555443 45677899988777 78888763 333332
Q ss_pred Hhh-------------hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCC--CCc
Q 014603 286 KSF-------------LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCIT-CPKKP--EGS 348 (422)
Q Consensus 286 ~~~-------------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--~~g 348 (422)
... ....++|+....+++.++|+...+. .++.+.++.+++.+++++.|+++|++. ....+ ..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~ 293 (355)
T cd00611 214 RKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSR 293 (355)
T ss_pred ccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCc
Confidence 221 1124578888888988898876666 689999999999999999999998763 12111 222
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
..+.+.++.. ....++.. .+.+.|+.+.++.. ..+.+|+|+. ++.+||+++++.|+++
T Consensus 294 ~vvsf~~~~~-----~l~~~~~~-~~~r~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 294 MNVPFRLGKE-----ELEKEFLK-EAEAAGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred eEEEEEcCCh-----hhhHHHHH-HHHHCCCcccCCCc--ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 3344455421 01233323 34567998666654 3478999998 6999999999998874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=188.05 Aligned_cols=326 Identities=16% Similarity=0.091 Sum_probs=213.3
Q ss_pred ceeecCCCCCCCCCCCCcHH-HHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCC-CCCCEEEec-CHHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASV-AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKL-SPDDVYLTL-GCTQAI 123 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~-v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~~~-g~~~a~ 123 (422)
.++|+.|.. .++|. |++++.+...........-..-+.+.|+.++++++ . ++++|++++ |+|.++
T Consensus 13 ~~~f~~Gp~------~~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~------~~~~~~v~~~~gs~T~~~ 80 (378)
T PRK03080 13 DPRFSSGPC------KKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLS------LPEGYEVGIVPGSDTGAW 80 (378)
T ss_pred CCCcCCCCc------CCChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEECCchHHHH
Confidence 466766652 34556 99999876542111111112346778888888883 3 345788775 899999
Q ss_pred HHHHHHhcCC-CCEEEecCCCccc-hHH-HHhhCCC-eEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccc
Q 014603 124 EVILTVLARP-GANILLPRPGFPY-YEA-RATHSHL-EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNV 199 (422)
Q Consensus 124 ~~~~~~l~~~-gd~Vl~~~~~~~~-~~~-~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~ 199 (422)
+.++.+++++ ++.|++ .-.|.. +.. .++..|. +++.++.+ .+..+|+++++. ++.+.+++.+|.||..
T Consensus 81 ~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~--~g~~~d~~~i~~-----~~~V~~~h~~t~tG~~ 152 (378)
T PRK03080 81 EMALWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEAD--YGSLPDLSAVDF-----DRDVVFTWNGTTTGVR 152 (378)
T ss_pred HHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccC--CCCCCCHhhcCC-----CCCEEEEecCCcccee
Confidence 9999999874 445554 445543 232 2356788 88877754 233467665432 4568899999999999
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~ 278 (422)
.| +++|++ +++|+++|+|.+++. |..+.++..+ | ++++|.+|++++ +| +|+++.+
T Consensus 153 ~p---i~~I~~--~~~g~~~vVDa~qs~----G~~pidv~~i--D---~~~~s~~K~l~~P~G--~g~l~v~-------- 208 (378)
T PRK03080 153 VP---VARWIG--ADREGLTICDATSAA----FALPLDWSKL--D---VYTFSWQKVLGGEGG--HGMAILS-------- 208 (378)
T ss_pred cc---chhhcc--ccCCCeEEEeccccc----ccCCCCHHHC--c---EEEEehhhhCCCCCc--eEEEEEC--------
Confidence 76 555555 688999999999987 4444455543 2 889999999755 66 7888876
Q ss_pred hhHHHHHHhh----------------------h--hhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 014603 279 SGIVDSIKSF----------------------L--NISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRL 333 (422)
Q Consensus 279 ~~~~~~~~~~----------------------~--~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L 333 (422)
++..+++... . ...++++.....++.++|+...+. .++.+.++.+++.+.+++.|
T Consensus 209 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l 288 (378)
T PRK03080 209 PRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWA 288 (378)
T ss_pred HHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3344443321 0 012345555666667777765555 68889999999999999999
Q ss_pred hcCCCCCCCC-CCC--CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHH
Q 014603 334 KEIPCITCPK-KPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 334 ~~~~~~~~~~-~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~ 408 (422)
++++++.+.. .+. ++..+.+.++... . . ...++...++++ |+.+..|......+.+|+|++ ++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~s~~i~~~~~~~~~-~-~-~~~~~~~~l~~~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~ 364 (378)
T PRK03080 289 EKTPWATPLVADPATRSNTSVTLDFVDAQ-A-A-VDAAAVAKLLRE-NGAVDIEPYRDAPNGLRIWCGPTVEPADVEALT 364 (378)
T ss_pred HhCCCcccccCCccccCccEEEEEcCCch-H-H-HHHHHHHHHHHc-CCeeccccccCCCCcEEEecCCCCCHHHHHHHH
Confidence 9987665331 121 2234444554300 0 0 133455666554 888877653323578999998 7899999999
Q ss_pred HHHHHHHHHhcc
Q 014603 409 GRMKAFYDRHAK 420 (422)
Q Consensus 409 ~~l~~~~~~~~~ 420 (422)
+.|++++++++.
T Consensus 365 ~al~~~~~~~~~ 376 (378)
T PRK03080 365 PWLDWAFERLKA 376 (378)
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-21 Score=183.62 Aligned_cols=353 Identities=15% Similarity=0.114 Sum_probs=212.1
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCC-EEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDD-VYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-i~~~~g~~ 120 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++......... ....+.+..+++.|....+....... ++++++|+
T Consensus 36 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~~~~~~~~~--~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGs 112 (442)
T TIGR00709 36 VEGKEYLDFLAGAGTLALG-HNHPNMKQKILDYLQSGLPLHTL--DLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGA 112 (442)
T ss_pred CCCCEEEEccccHhhhcCC-CCCHHHHHHHHHHHHhccCcccc--ccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHH
Confidence 3689999999887553233 45789999999998763211111 11234555566666543321111124 45568999
Q ss_pred HHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC------------eEEEeeccCCCC--cc----cCH----HH
Q 014603 121 QAIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPAKG--WE----VDL----DA 175 (422)
Q Consensus 121 ~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~----~d~----~~ 175 (422)
+|++.+++... ....+|+....+||+....+... +. .+..++...... ++ .+. +.
T Consensus 113 EA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (442)
T TIGR00709 113 DAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEY 192 (442)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHH
Confidence 99999988643 22368999999999886554432 20 112222111000 00 011 12
Q ss_pred HHHhhc-----CCceEEEEeCC-CCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeE
Q 014603 176 VEALAD-----ENTVALVIINP-GNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL 248 (422)
Q Consensus 176 l~~~~~-----~~~~~i~i~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i 248 (422)
+++.+. .+..+.++..| ++..| ..+|++.++++.++|++||+++|.||++.++.++|... ....++..++++
T Consensus 193 ~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PDiv 271 (442)
T TIGR00709 193 FENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-AFEHAGIEPDFV 271 (442)
T ss_pred HHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh-HHHHcCCCCcEE
Confidence 333332 12344445555 54455 45899999999999999999999999999988877532 333344444444
Q ss_pred EEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh-hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS-FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
+ ++|.++. |+|+|++++++ + .+.+.. ....+.+.++++++++.++|+...+.. ..++++++.+
T Consensus 272 ~---~gK~l~~-G~Pigav~~~~--------~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~g~ 335 (442)
T TIGR00709 272 V---MSKAVGG-GLPLAVLLIAP--------E-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDN---LAQNAQERGE 335 (442)
T ss_pred E---EcccccC-CcccEEEEEch--------H-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 4 5899765 89999999863 3 233221 123455789999999999997644322 3334555555
Q ss_pred HHHHHhhc----CCCCCCCCCCCCceEEEEecCccc-ccC----CC----CHHHHHHHHHHhcCeEEecCCCCCCCCeEE
Q 014603 328 ICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSL-LEG----IN----SDMEFALKLAKEESVIVLPGITVGLKDWLR 394 (422)
Q Consensus 328 ~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~-~~~----~~----~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR 394 (422)
++.+.|++ .|.+. . ...-|.++.+.+.... ... .. ....+. ..+.++|+++.+... ..+.+|
T Consensus 336 ~l~~~L~~l~~~~~~v~-~-vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gvl~~~~~~--~~~~l~ 410 (442)
T TIGR00709 336 RITSFLDDMIKEHPCIG-N-VRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQ-GACFENGLLLETGGR--EGEVFR 410 (442)
T ss_pred HHHHHHHHHHHhCCCee-e-eeccceEEEEEEccCcccccccccCCcchHHHHHHH-HHHHHCCeEEeecCC--CCCEEE
Confidence 55555543 33332 1 2344677777774211 000 00 012333 334567999976432 147899
Q ss_pred EEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 395 ITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 395 is~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.++ +++++++++++++++++.+..
T Consensus 411 ~~Ppl~it~~ei~~~~~~l~~~l~~~~ 437 (442)
T TIGR00709 411 LLCPITIDQEECEEGISRFKQAVEEAL 437 (442)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9887 799999999999999997753
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-21 Score=181.40 Aligned_cols=354 Identities=15% Similarity=0.084 Sum_probs=213.8
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGIL 90 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~ 90 (422)
+..++... .+|+.+.+.-... ....++|--.. + ..+|.+++++...+.+....+++ ......
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~l~~se-----n-~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~ 73 (416)
T PRK13034 6 SDSLEEYD-DEVFAAINKELER-----QQDHLELIASE-----N-FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVD 73 (416)
T ss_pred hhhHhhhC-HHHHHHHHHHHHH-----HhcCeeecccc-----c-CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHH
Confidence 44454443 4566655422221 24456554433 2 24789999998885321111111 123466
Q ss_pred HHHH----HHHHHHhhcCCCCCCCCCE-EEecCHHHHHHHHHHHhcCCCCEEEecCCCccc-hHHHHhh--CCCeE--EE
Q 014603 91 PARR----AIADYLNRDLPYKLSPDDV-YLTLGCTQAIEVILTVLARPGANILLPRPGFPY-YEARATH--SHLEV--RH 160 (422)
Q Consensus 91 ~lr~----~ia~~l~~~~~~~~~~~~i-~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~-~~~~~~~--~g~~~--~~ 160 (422)
++++ .++++++ .+.. ++++||+.|+..++.+++++||+|+++..+|.+ +...++. .+... ..
T Consensus 74 ~lE~~~~~~la~l~g--------~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (416)
T PRK13034 74 EVEALAIERAKQLFG--------CDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQ 145 (416)
T ss_pred HHHHHHHHHHHHHhC--------CCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEE
Confidence 7787 7888773 2345 556899999999999999999999999999976 2222222 12111 23
Q ss_pred eeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCCCc
Q 014603 161 FDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG-NTPFVPM 238 (422)
Q Consensus 161 ~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~ 238 (422)
+++++ ..+.+|++++++.++. +++++++.++. +|.. .++.+|.++|+++|+++|+|++|+...+. |...
T Consensus 146 ~~~~~-~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~---~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~--- 216 (416)
T PRK13034 146 YGVDR-LTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRE---LDFARFREIADEVGALLMVDMAHIAGLVAAGEHP--- 216 (416)
T ss_pred ccccc-ccCCcCHHHHHHHHhhcCCeEEEECCCc--cccc---cCHHHHHHHHHHcCCEEEEeCcccccCcccCCCC---
Confidence 33332 2456899999988743 56777665554 4555 47888888999999999999999864442 2211
Q ss_pred cccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc--cCcchHHHHHHHHHHhhchHHHHH
Q 014603 239 GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS--SDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 239 ~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
..+. .-.++++|++|+++++. .|++++++ +++..+++...... ..+.+...+++..++....+....
T Consensus 217 ~~~~--~~Di~~~s~~K~l~g~~--GG~v~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~ 285 (416)
T PRK13034 217 NPFP--HAHVVTTTTHKTLRGPR--GGMILTND-------EEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFK 285 (416)
T ss_pred CCCC--CceEEEEeCcccCCCCC--CeEEEECc-------HHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHH
Confidence 1111 12388899999974332 37777753 34445444432211 123333333333333322112234
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC------CCCCC
Q 014603 317 KITDILRETADICCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG------ITVGL 389 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g------~~~~~ 389 (422)
+.++++.++.+++++.|++. |+.+. .+ ......++.+.... .....+...+++.||.+.+. .....
T Consensus 286 ~~~~~l~~~a~~l~~~L~~~-G~~~~-~~~~~t~i~~v~~~~~~-----~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~ 358 (416)
T PRK13034 286 TYAKQVIANAQALAEVLKER-GYDLV-SGGTDNHLLLVDLRPKG-----LSGKDAEQALERAGITVNKNTVPGDTESPFV 358 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCEec-cCCCCCcEEEEEcCCCC-----CCHHHHHHHHHhCCcEEeccCCCCCCcCCCC
Confidence 56788999999999999988 77633 22 33455666664321 13334434457789999752 12223
Q ss_pred CCeEEEEec------cChHHHHHHHHHHHHHHHH
Q 014603 390 KDWLRITFA------VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 390 ~~~iRis~~------~~~~~l~~~~~~l~~~~~~ 417 (422)
...+|++++ .++++++++++.|++++.+
T Consensus 359 ~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 359 TSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 567999975 3579999999999988764
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-21 Score=183.04 Aligned_cols=228 Identities=18% Similarity=0.187 Sum_probs=160.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCC
Q 014603 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHL 156 (422)
Q Consensus 81 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~ 156 (422)
..|... +.+ .++.+.+++.+.. ..+..++++|+++++.+++ .++++||+|+++.+.|.++. ......|+
T Consensus 125 ~~Y~r~-gnp-t~~aLE~~lA~le----g~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~ 197 (464)
T PLN02509 125 YDYTRS-GNP-TRDALESLLAKLD----KADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV 197 (464)
T ss_pred CccCCC-CCH-HHHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCe
Confidence 356654 433 4555555554432 3456777788899987666 56899999999999998875 33456788
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
+++.++. .|++.+++.++++++++++++|+||+|.+ .++++|+++|+++|+++|+|++|..... + .
T Consensus 198 ~v~~vd~-------~d~e~l~~ai~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~---~ 263 (464)
T PLN02509 198 VVKRVNT-------TNLDEVAAAIGPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVL-S---R 263 (464)
T ss_pred EEEEeCC-------CCHHHHHHhCCcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCcccccc-C---C
Confidence 8776642 36889999998899999999999999997 7899999999999999999999865322 1 1
Q ss_pred CccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHH
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
++ .++.| +++.|++|.++++| .-.|++++.+ +.+..++...... ....++...+.+...|+.
T Consensus 264 pl-~~gaD---ivv~S~tK~l~G~gdv~gG~v~~~~-------~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~t----- 327 (464)
T PLN02509 264 PL-ELGAD---IVMHSATKFIAGHSDVMAGVLAVKG-------EKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT----- 327 (464)
T ss_pred hh-hcCCc---EEEecCcccccCCCccceeEEEecc-------HHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhh-----
Confidence 22 22333 88999999987644 3357676643 2344444333322 223455665655555554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..+.++..++++.+.+.|+++|.+.-+.+|
T Consensus 328 L~~R~~r~~~nA~~la~~L~~~p~V~~V~yP 358 (464)
T PLN02509 328 MALRIEKQQENARKIAMYLSSHPRVKKVYYA 358 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence 6778888899999999999998877544444
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-21 Score=183.31 Aligned_cols=293 Identities=15% Similarity=0.123 Sum_probs=193.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~ 162 (422)
+...++++.+|++.+ .+..++++||++|+++++.+++++||+|+++...|.+..... ...|++++.++
T Consensus 64 p~~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 135 (433)
T PRK08134 64 PTVAVLEERVAALEG--------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVK 135 (433)
T ss_pred hHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEEC
Confidence 346889999999883 235788999999999999998999999999999997654433 44788888776
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+ |++.+++.+++++++|++.+|+||+|.+. ++++|+++|+++|+++|+|.++.. +....++ .++
T Consensus 136 ~~-------d~~~l~~~i~~~TklV~~e~~~np~g~v~---Di~~I~~la~~~gi~livD~t~a~----~~~~~pl-~~G 200 (433)
T PRK08134 136 PG-------DIDGWRAAIRPNTRLLFGETLGNPGLEVL---DIPTVAAIAHEAGVPLLVDSTFTT----PYLLRPF-EHG 200 (433)
T ss_pred CC-------CHHHHHHhcCCCCeEEEEECCCcccCccc---CHHHHHHHHHHcCCEEEEECCCcc----cccCCch-hcC
Confidence 42 78999999999999999999999999995 688889999999999999999865 2222233 344
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccch-------------------------hHHHHHH--hhhhhccCc
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS-------------------------GIVDSIK--SFLNISSDP 295 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~-------------------------~~~~~~~--~~~~~~~~~ 295 (422)
.| +++.|.+|.++++|-.+|.+++......+... .+..+.+ .........
T Consensus 201 aD---~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~l 277 (433)
T PRK08134 201 AD---LVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACL 277 (433)
T ss_pred CC---EEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCC
Confidence 44 89999999998888777777653221110000 0000111 111122244
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------CceEEEEecCcc
Q 014603 296 ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE-----------------GSMFVMVKLNYS 358 (422)
Q Consensus 296 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------------~g~~~~~~~~~~ 358 (422)
++...+.+..-|+. +..+.++..++...+.+.|+++|.+.-+.+|. .|..+.+.++.
T Consensus 278 s~~~A~l~~~gL~t-----l~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~- 351 (433)
T PRK08134 278 SPMNAWQLLQGIET-----LPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKG- 351 (433)
T ss_pred CHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecC-
Confidence 55555555444544 67777888888889999999887654332321 23344455532
Q ss_pred cccCCCCHHHHHHHHHHhcCeEE---ecCCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHH
Q 014603 359 LLEGINSDMEFALKLAKEESVIV---LPGITV----------------------GL-KDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~gi~v---~~g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
..+.+.++++.-.+.. .-|... +. ++.||+|++. |+.+.+++.|.
T Consensus 352 -------~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl--E~~~dli~dl~ 422 (433)
T PRK08134 352 -------GRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGL--EDADDLIDDLK 422 (433)
T ss_pred -------CHHHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHH
Confidence 1122233333333322 111111 11 4679999997 45777778888
Q ss_pred HHHHHhcc
Q 014603 413 AFYDRHAK 420 (422)
Q Consensus 413 ~~~~~~~~ 420 (422)
+++++.++
T Consensus 423 ~Al~~~~~ 430 (433)
T PRK08134 423 RALKAAEK 430 (433)
T ss_pred HHHHhhhh
Confidence 88876544
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-21 Score=183.84 Aligned_cols=342 Identities=14% Similarity=0.115 Sum_probs=211.1
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC-CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF-NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.++||..|...... -..+|.|.+++.+++.+... ..|.. .+.+..+++.|.+..+ ...+.++|+++|+
T Consensus 72 ~dG~~ylD~~~g~~~~~l-Gh~hp~v~~Av~~ql~~l~~~~~~~~----~~~~~~lAe~L~~~~p--~~~~~v~f~~SGs 144 (442)
T TIGR03372 72 TQGNEFIDCLGGFGIFNV-GHRNPNVIAAVENQLAKQPLHSQELL----DPLRALLAKTLAALTP--GKLKYSFFCNSGT 144 (442)
T ss_pred CCCCEEEECCccHHhhhc-CCCCHHHHHHHHHHHHhCCCcccccC----CHHHHHHHHHHHHhCC--CCcCEEEEeCCch
Confidence 458889999888433222 24678999999999876321 11222 2344445555544322 2236799999999
Q ss_pred HHHHHHHHHhcC----CC-CEEEecCCCccchHHHHhhCCCeEE----EeeccCCCC--cccCHHHHHHhhc-----CCc
Q 014603 121 QAIEVILTVLAR----PG-ANILLPRPGFPYYEARATHSHLEVR----HFDLLPAKG--WEVDLDAVEALAD-----ENT 184 (422)
Q Consensus 121 ~a~~~~~~~l~~----~g-d~Vl~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~--~~~d~~~l~~~~~-----~~~ 184 (422)
+|++.+++.... .| .+|+....+||+....+........ ..|..+.-. --.|.+.+++.++ .+.
T Consensus 145 EA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~ 224 (442)
T TIGR03372 145 ESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDD 224 (442)
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCc
Confidence 999999886432 23 6899999999987654443321110 111111000 0025566666553 234
Q ss_pred eEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-
Q 014603 185 VALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG- 261 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G- 261 (422)
.+.++..| ....|.. +|++.++++.++|++||+++|+||++.++..+|.. ..+..++..++++ +++|.+ ..|
T Consensus 225 vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~-~a~e~~gv~PDiv---t~gK~l-g~G~ 299 (442)
T TIGR03372 225 VAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKM-FACEHEGVQPDIL---CLAKAL-GGGV 299 (442)
T ss_pred EEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccc-hhhhhcCCCCCee---eehhhh-cCCc
Confidence 56666777 5556664 57888999999999999999999999888777753 2333334333333 368996 567
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhh---hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----
Q 014603 262 WRLGWLVTSDPNGILQDSGIVDSIKSF---LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK---- 334 (422)
Q Consensus 262 ~r~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~---- 334 (422)
+++|.++++ +++.+.+... ...+.+.++++.+++.+.|+...++. ..++.++.-+++++.|+
T Consensus 300 ~Pigavv~~--------~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~ 368 (442)
T TIGR03372 300 MPIGATIAT--------EAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKN---LPAQAAIKGDFLLDGFQQLAA 368 (442)
T ss_pred ccceEEEec--------HHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHH
Confidence 689999885 4676666321 12344668899999999998654322 22333344444444443
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
++|... ......|.++.+.+.... ....+...+ .++||++.+... ..+.+|+.++ ++++++++++++++
T Consensus 369 ~~~~~i-~~vRG~Gl~~giel~~~~-----~~~~i~~~l-~~~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~ 439 (442)
T TIGR03372 369 EYPDLI-IEARGKGLLMAIEFRDNE-----IGYAFAKEL-FQQNILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAK 439 (442)
T ss_pred hCCCce-EEEecceEEEEEEeCChH-----HHHHHHHHH-HHCCcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHH
Confidence 344211 112344777777775320 133455554 567999975321 1478999987 79999999999998
Q ss_pred HHH
Q 014603 413 AFY 415 (422)
Q Consensus 413 ~~~ 415 (422)
+++
T Consensus 440 ~~~ 442 (442)
T TIGR03372 440 DAL 442 (442)
T ss_pred HhC
Confidence 764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-21 Score=173.87 Aligned_cols=347 Identities=16% Similarity=0.136 Sum_probs=229.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..++.....+ +.+|.|.+|+.+++.++. .|+.+ .+++-.+|+.+.+..+ ..+.|-|+++||+|
T Consensus 51 DGn~YIDy~~~~Gp~ilG-H~~p~V~~Av~~~l~~G~--~fg~P---te~Ei~~Aell~~~~p---~~e~vrfvnSGTEA 121 (432)
T COG0001 51 DGNEYIDYVLGWGPLILG-HAHPAVVEAVQEQLERGL--SFGAP---TELEVELAELLIERVP---SIEKVRFVNSGTEA 121 (432)
T ss_pred CCCEeeehhccCcccccC-CCCHHHHHHHHHHHHhcC--CCCCC---CHHHHHHHHHHHHhcC---cccEEEEecchhHH
Confidence 799999999998665444 467889999999998864 46543 2556667777766443 44899999999999
Q ss_pred HHHHHHHh---cCCCCEEEecCCCccchHHHHhh-CCCeEEEe--eccC---C--------CCcccCHHHHHHhhcCC--
Q 014603 123 IEVILTVL---ARPGANILLPRPGFPYYEARATH-SHLEVRHF--DLLP---A--------KGWEVDLDAVEALADEN-- 183 (422)
Q Consensus 123 ~~~~~~~l---~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~~--~~~~---~--------~~~~~d~~~l~~~~~~~-- 183 (422)
...+++.. +++ |+|+..+-|||+..+.+.. .|..+-.. |-.+ . -.|+ |++.+++++.+.
T Consensus 122 tmsAiRlARa~TgR-~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-D~~al~~~~~~~g~ 199 (432)
T COG0001 122 TMSAIRLARAYTGR-DKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-DLEALEEAFEEYGD 199 (432)
T ss_pred HHHHHHHHHHhhCC-CeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-CHHHHHHHHHHcCC
Confidence 99988754 443 8999999999987655442 22111100 1000 0 0011 889999988763
Q ss_pred ceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC
Q 014603 184 TVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG 261 (422)
Q Consensus 184 ~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G 261 (422)
..+.+|+.| ....|.+ +.++.+++|.++|+++|+++|.||+..++...-........+.+| +.++.|. .+.|
T Consensus 200 ~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD-----lttlGKi-IGGG 273 (432)
T COG0001 200 DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPD-----LTTLGKI-IGGG 273 (432)
T ss_pred cEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcc-----hhhhhhh-hcCC
Confidence 677788888 3336664 556679999999999999999999998766542233344455554 6667899 6899
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhhhh----hccCcchHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHHHhhc
Q 014603 262 WRLGWLVTSDPNGILQDSGIVDSIKSFLN----ISSDPATFIQGAVPQILEKTEE--EFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 262 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
+++|.+.++ .++++.+..... .+.+.+++++.|..+.|+...+ ..++++.+.-.++++-+.+.+++
T Consensus 274 lP~ga~gGr--------~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~ 345 (432)
T COG0001 274 LPIGAFGGR--------AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAER 345 (432)
T ss_pred cceeeeccH--------HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886 578887765442 3457788999999998886432 23455545555555555555555
Q ss_pred CCCCCCCCCCCCceEEEEecCccc--c-----cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSL--L-----EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGL 408 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~--~-----~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~ 408 (422)
. ++.+.....+++|-+.-.+... + .....-..++..+ .++||++.|+.+ ...=+|..+++++|++.+
T Consensus 346 ~-g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~-l~~GV~l~ps~~----ea~flS~ahte~di~~~~ 419 (432)
T COG0001 346 H-GIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHL-LNRGVYLAPSQF----EAGFLSTAHTEEDIDRTL 419 (432)
T ss_pred h-CCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHH-HhCCcccCCccc----cceeeecccCHHHHHHHH
Confidence 5 5543323344444332222110 0 0000123344544 456999999752 234577779999999999
Q ss_pred HHHHHHHHHhcc
Q 014603 409 GRMKAFYDRHAK 420 (422)
Q Consensus 409 ~~l~~~~~~~~~ 420 (422)
+++++++++...
T Consensus 420 ~a~~~~~~~~~~ 431 (432)
T COG0001 420 EAADEAFKELAG 431 (432)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-21 Score=178.17 Aligned_cols=270 Identities=16% Similarity=0.099 Sum_probs=182.0
Q ss_pred CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 112 DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 112 ~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
..+++++|++|++.++.+++++||+|+++.|.|.++.. .++..|+++..++.. +.+.+++.++++++++
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-------~~e~l~~al~~~TklV 153 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE-------IGAGIAKLMRPNTKVV 153 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC-------CHHHHHHhcCcCceEE
Confidence 44666668999999999999999999999999988764 456778888776421 3477999999899999
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGW 266 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~ 266 (422)
++++|+||++.+ .++++|+++|+++|+++|+|++|....+ ..+ ..++.| +++.|.+|.+++ .+.-.|+
T Consensus 154 ~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~----~~p-l~~GaD---ivv~S~tKy~~Gh~d~~~G~ 222 (395)
T PRK05967 154 HTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLY----FRP-LDFGVD---ISIHAATKYPSGHSDILLGT 222 (395)
T ss_pred EEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCcee----cCh-hHcCCC---EEEEecccccCCCCCeeEEE
Confidence 999999998766 8999999999999999999999975221 112 234444 999999999755 4466776
Q ss_pred EEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 267 LVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++.+ ++..+++..... .....++...+.+..-|+. +.-+.++..++...+.+.|+++|.+.-+.+|
T Consensus 223 v~~~--------~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T-----l~lR~~~~~~na~~lA~~L~~hp~v~~V~yP 289 (395)
T PRK05967 223 VSAN--------EKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT-----MGIRLEHHRKSALEIARWLEGRPDVARVLHP 289 (395)
T ss_pred EEcC--------HHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-----HHHHHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence 6653 344555543332 2335566666666555554 6667778888889999999998877534444
Q ss_pred C----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeE-Eec--CCCC----------------CC-
Q 014603 346 E----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI-VLP--GITV----------------GL- 389 (422)
Q Consensus 346 ~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-v~~--g~~~----------------~~- 389 (422)
. .|-.+.+.++.... +..+.+.+++++-.+. ..+ |... +.
T Consensus 290 gl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~----~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~~~~~~~~~~~~~~ 365 (395)
T PRK05967 290 ALPSFPGHEIWKRDFSGASGIFSFVLAAGPE----KGKAKAHAFLDALEIFGLGYSWGGYESLALHVKLGDRTVAKAPYA 365 (395)
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEEcCCCc----ccHHHHHHHHHhCCcceEccCCCCcceeeeeCCCChhHhhhccCC
Confidence 2 23345556642100 0123333443433332 111 1110 01
Q ss_pred CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 390 KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 390 ~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
++.||+|++.+ +.+.+++.|.++++..
T Consensus 366 ~~liRlSvGlE--d~~dLi~Dl~~Al~~~ 392 (395)
T PRK05967 366 GPVIRLQIGLE--DVPDLKADLERGFAAA 392 (395)
T ss_pred CCeEEEEeccC--CHHHHHHHHHHHHHhh
Confidence 35799999973 5666777777777643
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=180.79 Aligned_cols=220 Identities=17% Similarity=0.167 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
+...+|++.++++.+ . +..+++++|++++..++ .++++||+|+++.|.|.+... .+...|++++.++
T Consensus 50 p~~~~Le~~lA~l~g------~--~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~ 120 (377)
T PRK07671 50 PTRAALEELIAVLEG------G--HAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVD 120 (377)
T ss_pred hHHHHHHHHHHHHhC------C--CceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEEC
Confidence 346789999999873 2 23455666778888765 567899999999999984432 3345688877765
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||+|.+ .++++|.++|+++|+++|+|++|....+. . ++ .++
T Consensus 121 ~-------~d~~~l~~ai~~~tklV~le~P~NPtg~~---~dl~~I~~la~~~g~~lvvD~a~~~~~~~-~---p~-~~g 185 (377)
T PRK07671 121 T-------SNLEEVEEAIRPNTKAIYVETPTNPLLKI---TDIKKISTIAKEKGLLTIVDNTFMTPYWQ-S---PI-SLG 185 (377)
T ss_pred C-------CCHHHHHHhcCCCCeEEEEECCCCCCCcc---cCHHHHHHHHHHcCCEEEEECCCCccccC-C---hh-hhC
Confidence 2 37899999998899999999999999998 56888888999999999999998753221 1 12 223
Q ss_pred CCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
. .+++.|++|.+++++ .-.|++++++ +++.+++...+... ...++...+.+..-++. +..+.+
T Consensus 186 ~---Divv~S~sK~l~G~~~~~~G~~v~~~-------~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~t-----l~~R~~ 250 (377)
T PRK07671 186 A---DIVLHSATKYLGGHSDVVAGLVVVNS-------PELAEDLHFVQNSTGGILGPQDSWLLLRGLKT-----LGIRME 250 (377)
T ss_pred C---eEEEecCcccccCCccceeEEEEeCc-------HHHHHHHHHHHHhhcCCCCHHHHHHHHcCcCh-----HHHHHH
Confidence 3 389999999987654 3456666643 45777776655432 34455555554444433 556777
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..++...+.+.|++.|.+..+.+|
T Consensus 251 ~~~~na~~la~~L~~~~~v~~v~~p 275 (377)
T PRK07671 251 EHETNSRAIAEFLNNHPAVNKVYYP 275 (377)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECC
Confidence 8889999999999988776434343
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-21 Score=178.82 Aligned_cols=311 Identities=17% Similarity=0.229 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCC
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPG 143 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~ 143 (422)
++-.+++.+.+..+. .|+......++++.+++++ +.+++++++|+++|+.+++.++ +++||+|+++.++
T Consensus 11 ~~~~~~~~~~l~~~~--~~g~~~~~~~~e~~la~~~--------g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t 80 (375)
T PRK11706 11 GTELDYIQQAMSSGK--LCGDGGFTRRCQQWLEQRF--------GSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYT 80 (375)
T ss_pred HHHHHHHHHHHHcCC--ccCCCHHHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCC
Confidence 444677777776543 2332222344445555554 3468999999999999987765 6899999999999
Q ss_pred ccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcc
Q 014603 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223 (422)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~ 223 (422)
|.++...+...|++++.+++++ +++.+|++++++.++++++++++++ ++|.. .++++|.++|+++|++||+|+
T Consensus 81 ~~~~~~~~~~~G~~~v~~d~d~-~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~---~~~~~i~~la~~~~i~vIeD~ 153 (375)
T PRK11706 81 FVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIEAAITPKTRAIVPVH---YAGVA---CEMDTIMALAKKHNLFVVEDA 153 (375)
T ss_pred cHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcCCCCeEEEEeC---CCCCc---cCHHHHHHHHHHcCCEEEEEC
Confidence 9999999999999999999865 3467899999999988899888764 68877 467889999999999999999
Q ss_pred cccccc-cCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc--------
Q 014603 224 VYDHLA-FGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-------- 292 (422)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 292 (422)
+|+.+. +.+. ++..++ .+.+.||+ |.+ .+|.+.+++..+ +++.++++......
T Consensus 154 a~a~g~~~~~~---~~g~~~----~~~~~Sf~~~K~l-~~g~gG~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~ 217 (375)
T PRK11706 154 AQGVMSTYKGR---ALGTIG----HIGCFSFHETKNY-TAGEGGALLIND--------PALIERAEIIREKGTNRSQFFR 217 (375)
T ss_pred ccccccccCCe---eeecCc----CEEEEeCCCCccc-cccCCeEEEECC--------HHHHHHHHHHHHcCCCcchhhc
Confidence 998765 3332 122222 14455655 996 446665555532 45666555443210
Q ss_pred ----------cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCCCC----ceEEEEec
Q 014603 293 ----------SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC---ITCPKKPEG----SMFVMVKL 355 (422)
Q Consensus 293 ----------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~----g~~~~~~~ 355 (422)
.+.+........+++. ..-..+++..++-+++.+.+.+.|++++. +.....+.+ ..++++.+
T Consensus 218 ~~~~~~~~~~~g~~~~~~~~~aa~~~-~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (375)
T PRK11706 218 GQVDKYTWVDIGSSYLPSELQAAYLW-AQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKL 296 (375)
T ss_pred cCCCcceeeecccccCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEE
Confidence 0111111111111111 11133566666677777788888887652 331212221 23455656
Q ss_pred CcccccCCCCHHHHHHHHHHhcCeEEecCCCC----------C-----C-------CCeEEEEec--cChHHHHHHHHHH
Q 014603 356 NYSLLEGINSDMEFALKLAKEESVIVLPGITV----------G-----L-------KDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~----------~-----~-------~~~iRis~~--~~~~~l~~~~~~l 411 (422)
+.. .+..++...| .++||.+...... + . ...+-+-+. .++++++..++.|
T Consensus 297 ~~~-----~~r~~l~~~L-~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i 370 (375)
T PRK11706 297 RDL-----EDRSALINFL-KEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTI 370 (375)
T ss_pred CCc-----CCHHHHHHHH-HHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHH
Confidence 432 1345665655 6679987532100 0 0 233444333 5789999999998
Q ss_pred HHHH
Q 014603 412 KAFY 415 (422)
Q Consensus 412 ~~~~ 415 (422)
++++
T Consensus 371 ~~~~ 374 (375)
T PRK11706 371 LEFF 374 (375)
T ss_pred HHHh
Confidence 8764
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=178.15 Aligned_cols=313 Identities=14% Similarity=0.092 Sum_probs=213.9
Q ss_pred CCcHHHHHHHHHHhhCCC---CCCCCCC-------CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC-HHHHHHHHHHHh
Q 014603 62 RTASVAVDAIVHSVRSAR---FNCYSST-------VGILPARRAIADYLNRDLPYKLSPDDVYLTLG-CTQAIEVILTVL 130 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~---~~~y~~~-------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g-~~~a~~~~~~~l 130 (422)
..|..|++++.+.+.+.. ...+... .-+.++++.+++++ +.+ +..+|++++| ||.|+++++.++
T Consensus 2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~----~~~-~~~~v~~~~gsgT~a~ea~~~nl 76 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELL----NIP-DNYEVLFLQGGATGQFAAVPLNL 76 (349)
T ss_pred CCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHh----CCC-CCceEEEEcCCchHHHHHHHHhc
Confidence 356789999998887421 1122221 12344455566655 211 2346777755 999999999999
Q ss_pred cCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCC--CcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHH
Q 014603 131 ARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPAK--GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQ 206 (422)
Q Consensus 131 ~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~--~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~ 206 (422)
..+|+++++...+.++ +...++..|. +..+...+.. +..+++++++ ++++++++.+++..+.||+..+
T Consensus 77 ~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~----- 148 (349)
T TIGR01364 77 LAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR----- 148 (349)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----
Confidence 9899998888777644 4677888888 6666543222 1234555544 3457889999999999999864
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH
Q 014603 207 KIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286 (422)
Q Consensus 207 ~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 286 (422)
++++.+++++++|.+++. |..+.++..++ ++++|.+|.||.+| +|+++.++ +..+++.
T Consensus 149 ---~l~~~~~~l~iVDavss~----g~~~id~~~~d-----~~~~ssqK~lgP~G--lg~l~~s~--------~~~~~~~ 206 (349)
T TIGR01364 149 ---ELPDVKNAPLVADMSSNI----LSRPIDVSKFG-----LIYAGAQKNIGPAG--LTVVIVRK--------DLLGRAS 206 (349)
T ss_pred ---eecccCCCeEEEEccccc----cCccCCHHHcc-----EEEEecccccCCCc--eEEEEECH--------HHHhhcc
Confidence 455578999999999987 44444554432 88899999998777 78888763 3333321
Q ss_pred h-----------h--hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-C--CCce
Q 014603 287 S-----------F--LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKK-P--EGSM 349 (422)
Q Consensus 287 ~-----------~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~--~~g~ 349 (422)
. . ....++|+....+++.++|+...+. .++.+.++.+++.+++++.|++++++..... + ....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~ 286 (349)
T TIGR01364 207 RITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRM 286 (349)
T ss_pred cCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCe
Confidence 1 0 1123588888899999999876666 6999999999999999999999977642311 2 1223
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
.+.+.++.. ....++.. .+.++|+.+.+|.. ..+.+|+|+. ++.+||+++++.|++++++
T Consensus 287 v~sf~~~~~-----~~~~~~~~-~~~~~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 287 NVVFTLGNE-----ELEKRFLK-EAEERGLVSLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred EEEEecCCh-----hHhHHHHH-HHHHCCCcccCCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 344455431 01233334 44667998877765 3468999997 7899999999999987654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-21 Score=182.37 Aligned_cols=347 Identities=15% Similarity=0.161 Sum_probs=218.4
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|+|.+++.+++..... +.. ....+.+..+++.|.+..+ ...+.++|+++|++
T Consensus 79 ~dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~ql~~l~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsE 152 (459)
T PRK11522 79 TQGQEFIDCLGGFGIFNVG-HRNPVVVSAVQNQLAKQPL--HSQ-ELLDPLRAMLAKTLAALTP--GKLKYSFFCNSGTE 152 (459)
T ss_pred CCCCEEEECCcCHHhhhcC-CCCHHHHHHHHHHHhhCcc--ccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCchH
Confidence 3588899998885443222 4678999999999976322 111 1123444455555544322 23468999999999
Q ss_pred HHHHHHHHhc---C-CC-CEEEecCCCccchHHHHhhC-CCeEEE---eeccCC---CCcccCHHHHHHhhcC-----Cc
Q 014603 122 AIEVILTVLA---R-PG-ANILLPRPGFPYYEARATHS-HLEVRH---FDLLPA---KGWEVDLDAVEALADE-----NT 184 (422)
Q Consensus 122 a~~~~~~~l~---~-~g-d~Vl~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~---~~~~~d~~~l~~~~~~-----~~ 184 (422)
|++.+++... . +| ..|+....+||++...+... +..... .+..+. -.+ .|.+.+++.++. +.
T Consensus 153 Ave~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~ 231 (459)
T PRK11522 153 SVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNIEAMRTALSECKKTGDD 231 (459)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCHHHHHHHHHHhhccCCc
Confidence 9999988642 1 22 47899999999886544432 211111 111110 001 156777776642 34
Q ss_pred eEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-
Q 014603 185 VALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG- 261 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G- 261 (422)
.+.++..| +...|.+ +|.+.++++.++|++||+++|+||++.++..+|... ....++..++++ +++|.+ ..|
T Consensus 232 iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~-a~e~~gv~PDiv---t~gK~l-ggG~ 306 (459)
T PRK11522 232 VAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMF-ACEHENVQPDIL---CLAKAL-GGGV 306 (459)
T ss_pred EEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhh-hhhccCCCCCEE---Eechhh-hCCC
Confidence 55666777 5556764 577889999999999999999999998877776532 223333333333 568995 456
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhh---hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 014603 262 WRLGWLVTSDPNGILQDSGIVDSIKSF---LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI-- 336 (422)
Q Consensus 262 ~r~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 336 (422)
+++|.++++ +++.+.+... ...+.+.++++.+++.+.|+...++ +..++++++-+++++.|+++
T Consensus 307 ~Pigav~~~--------~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~ 375 (459)
T PRK11522 307 MPIGATIAT--------EEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQLAR 375 (459)
T ss_pred ccceeEEEc--------HHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 689999985 4566655321 1234466889999999988864422 24455555566666666543
Q ss_pred --CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHH
Q 014603 337 --PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 337 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
|.+. ......|.++.+.+... .....+...+ .++||.+.+... ..+.+|++++ ++++++++++++|.
T Consensus 376 ~~~~~i-~~VrG~Gl~~giel~~~-----~~~~~i~~~l-~~~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~l~~l~ 446 (459)
T PRK11522 376 EYPDLV-QEARGKGMLMAIEFVDN-----EIGYNFASEM-FRQRVLVAGTLN--NAKTIRIEPPLTLTIEQCEQVLKAAR 446 (459)
T ss_pred hCCCce-eeEEeceeEEEEEecCc-----hHHHHHHHHH-HHCCeEEEecCC--CCCEEEEECCccCCHHHHHHHHHHHH
Confidence 3211 11223467777777532 0133454544 557999976421 2478999987 78999999999999
Q ss_pred HHHHHhcc
Q 014603 413 AFYDRHAK 420 (422)
Q Consensus 413 ~~~~~~~~ 420 (422)
+++++..+
T Consensus 447 ~~l~~~~~ 454 (459)
T PRK11522 447 KALAAMRV 454 (459)
T ss_pred HHHHHHHH
Confidence 99987653
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=177.62 Aligned_cols=349 Identities=18% Similarity=0.157 Sum_probs=213.4
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|++.+++.+++..... +.......+....+|+.|....+ .-..+.++|+++|++
T Consensus 51 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lAe~L~~~~p-~~~~~~v~f~~SGsE 126 (441)
T PRK05769 51 VDGNVYLDFNAGIAVTNVG-HAHPKVVKAVKEQAEKFLH--YSLTDFYYEPAVELAERLVEIAP-GGFEKKVFFTNSGTE 126 (441)
T ss_pred CCCCEEEECCCchhhcccC-CCCHHHHHHHHHHHHhccC--ccCcccCCHHHHHHHHHHHHhCC-CCCCCEEEECCchHH
Confidence 3688899999887553333 4578999999999976321 11111123445556666654322 112368999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCC--CCcc---------cCHH
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPA--KGWE---------VDLD 174 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~--~~~~---------~d~~ 174 (422)
|++.+++... ...++|+....+||++...+... +. ++..++.... ..+. .+.+
T Consensus 127 A~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (441)
T PRK05769 127 SNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLD 206 (441)
T ss_pred HHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHH
Confidence 9999987542 12368999999999876544322 11 1122221100 0000 0123
Q ss_pred HHHH-hhc----CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCe
Q 014603 175 AVEA-LAD----ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV 247 (422)
Q Consensus 175 ~l~~-~~~----~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (422)
.+++ .++ .+..+.++..| ....|.. .+.+.+++|.++|++||+++|+||++.++.++|... ....++..+++
T Consensus 207 ~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~gv~pDi 285 (441)
T PRK05769 207 FIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHFGVEPDI 285 (441)
T ss_pred HHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee-hhhccCCCCCE
Confidence 3555 222 34566677777 4556664 567889999999999999999999999877766432 22233333333
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
+ +++|.++ .|+++|++++++ ++...+......+.+.++++++++.++|+...+ +..++++++.+
T Consensus 286 v---t~~K~l~-~G~p~gav~~~~--------~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~ 349 (441)
T PRK05769 286 I---TLAKAIA-GGLPLGAVIGRA--------ELMFLPPGSHANTFGGNPVAAAAALATLEELEE----GLLENAQKLGE 349 (441)
T ss_pred E---EEccccc-CCcccEEEEEeh--------hhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3 4689975 689999999863 454332222233446688999999999886433 44555666666
Q ss_pred HHHHHhhc----CCCCCCCCCCCCceEEEEecCcccccCC-CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cC
Q 014603 328 ICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VE 400 (422)
Q Consensus 328 ~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~ 400 (422)
+|++.|++ ++.+. ....-|.++.+.+.....+.. .....+... +.++||++.+.. .+.+|++++ ++
T Consensus 350 ~l~~~L~~l~~~~~~~~--~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~Gil~~~~~----~~~lr~~p~l~~t 422 (441)
T PRK05769 350 YLRKELKELKEKYEFIG--DVRGLGLMIGVELVKDRKEPDPKLRDKVLYE-AFKRGLLLLGAG----KSAIRIIPPLIIT 422 (441)
T ss_pred HHHHHHHHHHHhCCCee--eeecceEEEEEEeccCCccccHHHHHHHHHH-HHhCCcEEecCC----CCEEEEeCCCCCC
Confidence 66666654 33221 122336666666632110000 012234444 456799997642 367999987 69
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 014603 401 PSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~ 418 (422)
+++|+++++++++++++.
T Consensus 423 ~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 423 EEEADIGLEILEEAIKEL 440 (441)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998764
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=179.56 Aligned_cols=229 Identities=18% Similarity=0.098 Sum_probs=160.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~ 162 (422)
+....|++.++++.+ .+..+++++|++|+..++.+++++||+|+++...|.+.... +...|++++.++
T Consensus 69 p~~~~Le~~lA~l~g--------~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 140 (436)
T PRK07812 69 PTQDVVEQRIAALEG--------GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE 140 (436)
T ss_pred chHHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC
Confidence 345788888888873 34578888999999999999999999999999888765432 334566666653
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
++ .|++.+++.+++++++|++.+|+||+|.+. ++++|.++|+++|+++|+|+++.. +....++ .++
T Consensus 141 -d~-----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~---Dl~~I~~la~~~gi~liVD~t~a~----~~~~~pl-~~G 206 (436)
T PRK07812 141 -DP-----DDLDAWRAAVRPNTKAFFAETISNPQIDVL---DIPGVAEVAHEAGVPLIVDNTIAT----PYLIRPL-EHG 206 (436)
T ss_pred -CC-----CCHHHHHHhCCCCCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCCcc----cccCCch-hcC
Confidence 11 388999999998999999999999999994 688888999999999999999864 2112222 233
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCccc-----------------------chhHHHHHH--hhhhhccCcch
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ-----------------------DSGIVDSIK--SFLNISSDPAT 297 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~-----------------------~~~~~~~~~--~~~~~~~~~~~ 297 (422)
.| +++.|++|.+++.|--+|.+++......++ ++.++.+.. .........++
T Consensus 207 aD---ivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p 283 (436)
T PRK07812 207 AD---IVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISP 283 (436)
T ss_pred CC---EEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCH
Confidence 33 788999999988876677766642210000 011111111 11122335566
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 298 FIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 298 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
...+.+..-|+. +..+.++..++...+.+.|+++|.+.-+.+|
T Consensus 284 ~~a~l~~rgl~t-----L~~R~~~~~~nA~~la~~L~~~p~v~~V~yP 326 (436)
T PRK07812 284 FNAFLIAQGLET-----LSLRIERHVANAQRVAEFLEARDEVASVNYA 326 (436)
T ss_pred HHHHHHhcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 666655555554 6777888889999999999998876544444
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-20 Score=176.73 Aligned_cols=308 Identities=19% Similarity=0.192 Sum_probs=205.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCC
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPG 143 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~ 143 (422)
++-.+++.+.+..+. |.......++|+.++++++. ++.++++|+++|+..++.++ +++||+|+++.++
T Consensus 10 ~~~~~~v~~~~~~~~---~~~g~~~~~le~~la~~~g~--------~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~ 78 (380)
T TIGR03588 10 QDDIDAVVEVLKSDF---LTQGPTVPAFEEALAEYVGA--------KYAVAFNSATSALHIACLALGVGPGDRVWTTPIT 78 (380)
T ss_pred HHHHHHHHHHHhcCC---ccCChhHHHHHHHHHHHHCC--------CeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcc
Confidence 455777777776543 33334578999999999942 35667778999999999998 7899999999999
Q ss_pred ccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc----CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEE
Q 014603 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD----ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMV 219 (422)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 219 (422)
|.++...+...|++++.+++++ +++.+|++.+++.++ ++++++++++ ++|.. .++++|.++|+++|++|
T Consensus 79 ~~~~~~~~~~~G~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~---~~~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 79 FVATANCALYCGAKVDFVDIDP-DTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKS---VDMQAIAALAKKHGLKI 151 (380)
T ss_pred hHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCcc---CCHHHHHHHHHHcCCEE
Confidence 9999888889999999999865 346789999999988 6788887554 57877 45888899999999999
Q ss_pred EEcccccccc-cCCCCCCCccc--cCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhcc-
Q 014603 220 IADEVYDHLA-FGNTPFVPMGV--FGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS- 293 (422)
Q Consensus 220 i~D~~~~~~~-~~~~~~~~~~~--~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 293 (422)
|+|++|+... +.+.. +.. ++ .+.+.|++ |.++.+ ..|++++.+ +++.++++.......
T Consensus 152 I~D~a~a~g~~~~~~~---~g~~~~~----d~~~~S~~~~K~~~~~--~GG~v~~~~-------~~~~~~~~~~~~~g~~ 215 (380)
T TIGR03588 152 IEDASHALGAEYGGKP---VGNCRYA----DATVFSFHPVKIITTA--EGGAVTTND-------EELAERMRLLRSHGIT 215 (380)
T ss_pred EEECCCcccCccCCEe---CCCcccc----ceEEEecCCCCccccc--CceEEEECC-------HHHHHHHHHHHHCCCC
Confidence 9999998642 33321 111 21 27777776 876443 357777764 456666654322110
Q ss_pred -------------------------CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-
Q 014603 294 -------------------------DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG- 347 (422)
Q Consensus 294 -------------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~- 347 (422)
..+.+..+.+...| ..+++..++-+++.+++.+.|+++|++.....+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL-----~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~ 290 (380)
T TIGR03588 216 KDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQL-----KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGS 290 (380)
T ss_pred CCcccccccccCcceeeeeccccccCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCC
Confidence 00111112222222 22567777788888899999999877663322211
Q ss_pred --ceE-EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC-----------CC----------CCeEEEEec--cCh
Q 014603 348 --SMF-VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-----------GL----------KDWLRITFA--VEP 401 (422)
Q Consensus 348 --g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-----------~~----------~~~iRis~~--~~~ 401 (422)
..+ +.+.++.. .+ .+..++...| +++||.+.....+ .. ...+++.+. .++
T Consensus 291 ~~~~~~~~i~~~~~--~~-~~r~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~ 366 (380)
T TIGR03588 291 KSAWHLYPILLDQE--FG-CTRKEVFEAL-RAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTL 366 (380)
T ss_pred EeEEEEEEEEECCc--CC-CCHHHHHHHH-HHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCH
Confidence 122 22233321 01 1455666655 6779988643311 00 255777766 688
Q ss_pred HHHHHHHHHHHHHH
Q 014603 402 SALEDGLGRMKAFY 415 (422)
Q Consensus 402 ~~l~~~~~~l~~~~ 415 (422)
++++..++.|++++
T Consensus 367 ~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 367 EQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-21 Score=177.75 Aligned_cols=214 Identities=18% Similarity=0.193 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~ 163 (422)
....|+++++++.+ .+..+++++|+.|+.+++ .++++||+|+++++.|.+.. ..+...|++++.++.
T Consensus 51 ~~~~Le~~la~l~g--------~~~al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 51 TRFALEELIADLEG--------GVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred hHHHHHHHHHHHhC--------CCCEEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 36788999999873 234566677788998777 46789999999999997543 344556777776643
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.|++.+++.++++++++++++|+||+|.+. ++++|.++|+++|+++|+|++|+...+ +. ++ .++.
T Consensus 122 -------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~---di~~I~~la~~~gi~vivD~t~a~~~~-~~---p~-~~ga 186 (380)
T PRK06176 122 -------SDLSQIKKAIKPNTKALYLETPSNPLLKIT---DLAQCASVAKDHGLLTIVDNTFATPYY-QN---PL-LLGA 186 (380)
T ss_pred -------CCHHHHHHhcCcCceEEEEECCCCCCceec---CHHHHHHHHHHcCCEEEEECCcccccc-CC---cc-ccCC
Confidence 378999999988999999999999999995 578889999999999999999975322 11 22 2333
Q ss_pred CCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFFSKITDI 321 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 321 (422)
| +++.|++|.++++| .-.|++++++ +++.+++....... ...++...+.+...++. +..+.++
T Consensus 187 D---ivv~S~tK~l~g~~d~~gG~vv~~~-------~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t-----l~~R~~~ 251 (380)
T PRK06176 187 D---IVVHSGTKYLGGHSDVVAGLVTTNN-------EALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT-----LGLRMEA 251 (380)
T ss_pred C---EEEecCceeccCCccceeeEEEecH-------HHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc-----HHHHHHH
Confidence 3 89999999987765 3456666643 35666665544432 23344444443333332 4455566
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q 014603 322 LRETADICCDRLKEIPCIT 340 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~ 340 (422)
..++...+.+.|+++|.+.
T Consensus 252 ~~~~a~~la~~L~~~p~v~ 270 (380)
T PRK06176 252 HQKNALCVAEFLEKHPKVE 270 (380)
T ss_pred HHHHHHHHHHHHHhCCCee
Confidence 6677777888888776654
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-20 Score=179.78 Aligned_cols=355 Identities=14% Similarity=0.104 Sum_probs=213.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|++.+++.+++...... .. ....+.+..+++.|.+..+ ..+.++|+++|++
T Consensus 44 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~--~~-~~~~~~~~~lae~l~~~~~---~~~~v~f~~sGse 116 (451)
T PRK07678 44 IQGNRYLDGMSGLWCVNVG-YGRKELAEAAYEQLKTLSYF--PL-TQSHEPAIKLAEKLNEWLG---GEYVIFFSNSGSE 116 (451)
T ss_pred CCCCEEEEccccHHhhcCC-CCCHHHHHHHHHHHHhcCcc--cc-ccCCHHHHHHHHHHHHhCC---CCCEEEEeCCcHH
Confidence 4689999998886543333 45789999999998863221 11 1112333445555544332 2358999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhC-CC------------eEEEeeccCCCC--cc-----cCH
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPAKG--WE-----VDL 173 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~-----~d~ 173 (422)
|++.+++.... +| .+|+....+||++...+... +. .+..++...... +. .+.
T Consensus 117 A~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (451)
T PRK07678 117 ANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDL 196 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHH
Confidence 99999876421 23 68999999999876544422 11 111121110000 00 011
Q ss_pred ---HHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 174 ---DAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 174 ---~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
+.+++.+. ++..+.+|..| +...|.+ +|++.++++.++|++||+++|+||++.++.++|... ....++..+
T Consensus 197 ~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~gv~P 275 (451)
T PRK07678 197 ECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF-GFMNYGVKP 275 (451)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhH-HHHhcCCCC
Confidence 22455553 34566677777 4445654 677889999999999999999999999887777432 223344334
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-------hhhccCcchHHHHHHHHHHhhchHH-HHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-------LNISSDPATFIQGAVPQILEKTEEE-FFSK 317 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~ 317 (422)
+++ +++|.++...+++|.++++ +++++.+... ...+.+.++++++++.+.|+...++ .+++
T Consensus 276 Div---t~gK~lggG~~Pi~av~~~--------~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~ 344 (451)
T PRK07678 276 DII---TMAKGITSAYLPLSATAVK--------KEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIER 344 (451)
T ss_pred CEE---EeecccccCCcceeEEEEc--------HHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 444 4479964433799999986 4677776531 2345678899999999999865432 2233
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc-cC---CCCHHHHHHHHHHhcCeEEecCCC--CCCCC
Q 014603 318 ITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-EG---INSDMEFALKLAKEESVIVLPGIT--VGLKD 391 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~---~~~~~~~~~~l~~~~gi~v~~g~~--~~~~~ 391 (422)
..+.-...++.+.+.+++++.+. . ....|.++.+.+..... .. ......+... +.++||++.+... ....+
T Consensus 345 ~~~~g~~l~~~l~~~~~~~~~v~-~-vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~-l~~~Gv~~~~~g~~v~~~~~ 421 (451)
T PRK07678 345 SAQLGELLLEQLKEELGEHPLVG-D-IRGKGLLVGIELVNDKETKEPADNDKVASVVAA-CKEKGLIIGKNGDTVAGYNN 421 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEE-E-EEeeceEEEEEEecCCcccCcCchHHHHHHHHH-HHHCCcEEeecCccccCCCC
Confidence 22222333344444444444322 1 23346666666632110 00 0012334444 4567999976321 12247
Q ss_pred eEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 392 WLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 392 ~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+|+++. +++++|+++++++.++++++
T Consensus 422 ~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 422 VLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 8999987 69999999999999999765
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=178.80 Aligned_cols=227 Identities=16% Similarity=0.142 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~ 163 (422)
...++++.++++.+ .+..+++++|++|+.+++.+++++||+|+++.+.|.+.. ..+...|++++.++.
T Consensus 64 ~~~~le~~lA~l~g--------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 64 TNAVLEERVAALEG--------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred cHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 45788889998872 345888999999999999999999999999999998643 335667888877753
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.|++.+++.++++++++++++|+||+|.++ ++++|.++|+++|+++|+|+++.. +....++ .++.
T Consensus 136 -------~d~~~l~~ai~~~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~a~a~----~~~~~pl-~~ga 200 (427)
T PRK05994 136 -------DDPASFERAITPRTKAIFIESIANPGGTVT---DIAAIAEVAHRAGLPLIVDNTLAS----PYLIRPI-EHGA 200 (427)
T ss_pred -------CCHHHHHHhcCcCCeEEEEECCCCCCCeec---CHHHHHHHHHHcCCEEEEECCccc----cccCCcc-ccCC
Confidence 278899999988999999999999999996 478889999999999999999974 2212222 2344
Q ss_pred CCCeEEEecCccccCCCCceeEEEEeeCCCCcccc-----------hh-----HHH-----------HHHhhhhhccCcc
Q 014603 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD-----------SG-----IVD-----------SIKSFLNISSDPA 296 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~-----------~~-----~~~-----------~~~~~~~~~~~~~ 296 (422)
| +++.|++|.++.+|-.+|.+++......+.. +. +.+ ............+
T Consensus 201 D---ivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 277 (427)
T PRK05994 201 D---IVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAIS 277 (427)
T ss_pred c---EEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCC
Confidence 4 8899999998887766776665321100000 00 111 1111122223455
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 297 TFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 297 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
++..+.+..-|+. +..+.++..++...+.+.|+++|.+.-+.+|
T Consensus 278 ~~~A~l~~~~l~t-----L~~r~~~~~~~a~~la~~L~~~p~v~~v~yP 321 (427)
T PRK05994 278 PFNAFLILTGIET-----LPLRMQRHSDNALAVAEWLKGHPKVSWVNYA 321 (427)
T ss_pred HHHHHHHHcCccc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 5555555555554 6777788888899999999988876533333
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-20 Score=178.96 Aligned_cols=355 Identities=13% Similarity=0.093 Sum_probs=221.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++..... +.......+.+..+++.+.+.. +...+.++|+++|++
T Consensus 49 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGse 123 (460)
T PRK06541 49 DRGKRYLDGLAGLFVVQVG-HGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERLAALA--PGDLNRVFFTTGGSE 123 (460)
T ss_pred CCCCEEEECCccHHhccCC-CCCHHHHHHHHHHHhhCcC--ccccccCCHHHHHHHHHHHHhC--CCCcCEEEEcCCcHH
Confidence 4689999999886443233 4578999999999976321 1111112233444555554422 223468999999999
Q ss_pred HHHHHHHHhcC--------CCCEEEecCCCccchHHHHhhC-CC------------eEEEeeccCCCC---cccC-----
Q 014603 122 AIEVILTVLAR--------PGANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPAKG---WEVD----- 172 (422)
Q Consensus 122 a~~~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~~~---~~~d----- 172 (422)
|++.+++.... ...+|+....+||+....+... +. .+..++...... +.-+
T Consensus 124 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 203 (460)
T PRK06541 124 AVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFG 203 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHH
Confidence 99999875421 1368999999999875443322 11 112222110000 1112
Q ss_pred ---HHHHHHhhc---CCceEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 173 ---LDAVEALAD---ENTVALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 173 ---~~~l~~~~~---~~~~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
++.+++.+. ++..++++..| ++++|.+. |.+.+++|.++|++||+++|+||++.++...|... ....++..
T Consensus 204 ~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~-a~~~~gv~ 282 (460)
T PRK06541 204 RWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GCERFGYV 282 (460)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhh-hhhhcCCC
Confidence 255666664 35677778888 78889865 58889999999999999999999998876666532 22223333
Q ss_pred CCeEEEecCccccCCCCc-eeEEEEeeCCCCcccchhHHHHHHhh-----hhhccCcchHHHHHHHHHHhhchHHHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDSGIVDSIKSF-----LNISSDPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
++++ +++|.++ .|+ ++|+++++ +++++.+... ...+...++++.+++.+.|+...+ +..
T Consensus 283 PDiv---t~gK~l~-~G~~pigav~~~--------~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~---~~~ 347 (460)
T PRK06541 283 PDII---TCAKGIT-SGYSPLGAMIAS--------DRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFER---EGL 347 (460)
T ss_pred CCEE---Eeccccc-CCccceeEEEEc--------HHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh---ccH
Confidence 3333 4789965 776 99999986 4666666432 122456778888888888876332 234
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCC-CCCCCceEEEEecCccc--ccCCCC------HHHHHHHHHHhcCeEEecCCCCCC
Q 014603 319 TDILRETADICCDRLKEIPCITCP-KKPEGSMFVMVKLNYSL--LEGINS------DMEFALKLAKEESVIVLPGITVGL 389 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~~~--~~~~~~------~~~~~~~l~~~~gi~v~~g~~~~~ 389 (422)
.++++++.+++.+.|+++....++ .....|.++.+.+.... ...... ....+...+.++||++.+.. . .
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~-g 425 (460)
T PRK06541 348 LDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADD-R-G 425 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecC-C-C
Confidence 566777777777777765222111 12244667667663210 000000 00122333456799998731 1 1
Q ss_pred CCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 390 KDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 390 ~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.+|+++. +++++|++++++|.+++.+..
T Consensus 426 ~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 426 DPVVQLAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 368999998 899999999999999997653
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=180.21 Aligned_cols=353 Identities=16% Similarity=0.101 Sum_probs=217.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.+|||..|......+ ..+|++.+++.+++..... +.. .....+.+..+|+.|.+..+ .+.+.++|+++|+
T Consensus 47 ~dG~~ylD~~sg~~~~~lG-h~~p~v~~Av~~q~~~~~~--~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGS 121 (461)
T PRK07482 47 AQGRRYIDAFAGLYCVNVG-YGRTEVAEAIAEQAKELAY--YHTYVGHGTEASITLSKRIIDRAP--AGMSKVYYGLSGS 121 (461)
T ss_pred CCCCEEEEcccchhhhcCC-CCCHHHHHHHHHHHHhcCc--cccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchH
Confidence 3699999999987654333 4578999999999986321 111 01123445556665554322 2346899999999
Q ss_pred HHHHHHHHHhc------C-C-CCEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCC---cc------
Q 014603 121 QAIEVILTVLA------R-P-GANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKG---WE------ 170 (422)
Q Consensus 121 ~a~~~~~~~l~------~-~-gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~---~~------ 170 (422)
+|++.+++... . + ..+|+....+||+....+..... .+..++...... ..
T Consensus 122 EAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 201 (461)
T PRK07482 122 DANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQF 201 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHH
Confidence 99999988653 1 2 26799999999987543332111 111111110000 00
Q ss_pred --cCHHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 171 --VDLDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 171 --~d~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.+++.+++.+. ++..+.+|..| +...|.+ +|.+.+++|.++|++||+++|.||++.++.++|... ....++.
T Consensus 202 ~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~~~~gv 280 (461)
T PRK07482 202 SAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHYGI 280 (461)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchh-hHHhcCC
Confidence 03466677663 24466677777 5555665 677889999999999999999999999988777543 2233444
Q ss_pred CCCeEEEecCccccCCCCc-eeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHH-
Q 014603 244 IVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEE- 313 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~- 313 (422)
.++++++ +|.+ ..|. ++|.++++ +++.+.+... ...+.+.++++++++.+.|+...++
T Consensus 281 ~PDiv~~---gKgl-~gG~~Pi~av~~~--------~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~ 348 (461)
T PRK07482 281 EPDLITV---AKGL-TSAYAPLSGSIVG--------EKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILEREN 348 (461)
T ss_pred CCCEEEE---cccc-ccCccccceeeec--------HHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence 4444544 6995 5574 89988885 4666666421 2235578899999999999865432
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc--cCCCC----HHHHHHHHHHhcCeEEecCCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL--EGINS----DMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
.+++..+.-...++.+.+.++++|.+. . ...-|.++.+.+..... ..... ...+... +.++|+++.++.
T Consensus 349 l~~~~~~~g~~l~~~L~~l~~~~~~v~-~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~~-- 423 (461)
T PRK07482 349 LVGNAAEVGAYFRARLRAAFGDHPLVG-E-VRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAA-ALERGVIARAMP-- 423 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEE-E-EeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHH-HHHCCcEEecCC--
Confidence 233332223333333333334454332 1 23446777777743110 00000 1234444 456799986532
Q ss_pred CCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 388 GLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 388 ~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
..+.+|+.++ +++++|+++++++.+++++.
T Consensus 424 -~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 424 -HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred -CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1367899876 79999999999999999775
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=178.25 Aligned_cols=350 Identities=17% Similarity=0.156 Sum_probs=210.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC--CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN--CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.+|+.+|||..|......+ ..+|++.+++.+++.+.... .|.. .+.+..+++.|.+.. +...+.++|+++|
T Consensus 50 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~ql~~~~~~~~~~~~----~~~~~~lae~L~~~~--p~~~~~v~f~~SG 122 (457)
T PRK05639 50 VDGNVFIDFLAGAAAASTG-YSHPKLVKAVQEQVALIQHSMIGYTH----SERAIRVAEKLAEIS--PIENPKVLFGLSG 122 (457)
T ss_pred CCCCEEEECCcCHHhhccC-CCCHHHHHHHHHHHHhccccccCccC----CHHHHHHHHHHHhhC--CCCcCEEEEeCch
Confidence 4688999998886443222 46789999999998763211 2222 133333444444322 2233689999999
Q ss_pred HHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCCCC--cc----cCH----
Q 014603 120 TQAIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPAKG--WE----VDL---- 173 (422)
Q Consensus 120 ~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~--~~----~d~---- 173 (422)
++|++.+++... ....+|+....+||+....+... +. ++..+|...... +. -+.
T Consensus 123 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T PRK05639 123 SDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELI 202 (457)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHH
Confidence 999999988653 23368999999999875443321 10 122233211000 00 022
Q ss_pred ----HHHHHhh-----cCCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 174 ----DAVEALA-----DENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 174 ----~~l~~~~-----~~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
+.+++.+ .++..+.+|..| +...|. .+|.+.++++.++|++||+++|+||++.++..+|... ....++
T Consensus 203 ~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~g 281 (457)
T PRK05639 203 NRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWF-ASEWFE 281 (457)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHH-HHHhcC
Confidence 2344433 234566677777 555666 4678889999999999999999999999877666532 122233
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDIL 322 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 322 (422)
..+++++ ++|.+ ..|.++|+++++ +++++........+...+++..+++.+.|+...++. ..++.
T Consensus 282 v~PDiv~---~gK~l-~gG~pi~av~~~--------~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~---l~~~~ 346 (457)
T PRK05639 282 VKPDLII---FGKGV-ASGMGLSGVIGR--------KELMDLTSGSALLTPAANPVISAAAEATLEIIEEEN---LLKNA 346 (457)
T ss_pred CCCCEEE---echhh-cCCCcceeEEeh--------HHHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHHcc---HHHHH
Confidence 3333444 58995 457899999986 356652221222345678888888888887644222 22333
Q ss_pred HHHHHHHHHHhhc----CCCCCCCCCCCCceEEEEecCcccccC-CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe
Q 014603 323 RETADICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEG-INSDMEFALKLAKEESVIVLPGITVGLKDWLRITF 397 (422)
Q Consensus 323 ~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 397 (422)
+++-++|++.|++ .+-+. . ...-|.++.+.+....... ......+... +.++|+++.+... ..+.+|+.+
T Consensus 347 ~~~g~~l~~~L~~l~~~~~~~~-~-VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~-~~~~Gv~~~~~g~--~~~~lr~~P 421 (457)
T PRK05639 347 LKVGEFIKKRLLEMKESFEVIG-D-VRGKGLMIGVEIVKENGKPDPELTGKICWR-AFELGLILPSYGM--FGNVIRITP 421 (457)
T ss_pred HHHHHHHHHHHHHHHHhCCCEE-e-eccceeEEEEEEecCCCCCCHHHHHHHHHH-HHhCCeEEeecCC--CCCEEEEeC
Confidence 3344444444443 33222 1 2344666666663211000 0012334444 4567999976421 147899999
Q ss_pred c--cChHHHHHHHHHHHHHHHHhc
Q 014603 398 A--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 398 ~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
. .++++++++++++++++++..
T Consensus 422 pl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 422 PLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHH
Confidence 8 789999999999999998764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=179.82 Aligned_cols=349 Identities=17% Similarity=0.144 Sum_probs=215.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC-CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST-VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+|+.+|||..|......+ ..+|+|.+++.+++..... +... ....+....+++.|.+.+. +.+.+.++|+++|++
T Consensus 87 dG~~ylD~~sg~~~~~lG-h~hp~v~~Av~~ql~~~~~--~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsE 162 (504)
T PLN02760 87 NGKKYLDALAGLWCTALG-GSEPRLVAAATEQLNKLPF--YHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSE 162 (504)
T ss_pred CCCEEEEcCcCHHhcccC-CCCHHHHHHHHHHHhhccc--eecccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHH
Confidence 689999999986554444 5689999999999976321 1110 1123444445555443211 223357999999999
Q ss_pred HHHHHHHHhc------C-CC-CEEEecCCCccchHHHHhh-CCCe------------EEEeeccCCCCcc----------
Q 014603 122 AIEVILTVLA------R-PG-ANILLPRPGFPYYEARATH-SHLE------------VRHFDLLPAKGWE---------- 170 (422)
Q Consensus 122 a~~~~~~~l~------~-~g-d~Vl~~~~~~~~~~~~~~~-~g~~------------~~~~~~~~~~~~~---------- 170 (422)
|++.+++... . ++ .+|+..+.+||+....+.. .|.. +..++.. ..+.
T Consensus 163 A~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~ 240 (504)
T PLN02760 163 ANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP--HYWRFHLPGETEEE 240 (504)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC--cccccCCCCCcHHH
Confidence 9999998763 1 23 6899999999887543322 2211 1111110 0000
Q ss_pred ---cCHHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 171 ---VDLDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 171 ---~d~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
...+.+++.+. ++..+.+|..| ....|.+ +|++.+++|.++|++||+++|+||++.+++++|... ....++
T Consensus 241 ~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~-a~e~~g 319 (504)
T PLN02760 241 FSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF-GCDKYN 319 (504)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhh-HHHhcC
Confidence 01134555552 24466677777 4455654 678889999999999999999999999887777643 233333
Q ss_pred CCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHH
Q 014603 243 SIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
..++ +.+++|.++ .| +++|.++++ +++++.+... ...+.+.++++++++.+.|+...++
T Consensus 320 v~PD---ivtlgK~lg-gG~~PigAv~~~--------~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~ 387 (504)
T PLN02760 320 IKPD---LVSLAKALS-SAYMPIGAVLVS--------PEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER 387 (504)
T ss_pred CCCc---EEEeccccc-CCccccceEeec--------HHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3333 345689964 45 589998886 4677776531 2334567899999999999864422
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCceEEEEecCcccc-cC-CCC----HHHHHHHHHHhcCeEEecCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITC-PKKPEGSMFVMVKLNYSLL-EG-INS----DMEFALKLAKEESVIVLPGIT 386 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~g~~~~~~~~~~~~-~~-~~~----~~~~~~~l~~~~gi~v~~g~~ 386 (422)
+..++++++.++|++.|+++....+ .....-|.++.+.+..... .. ... ...+... +.++||++.+.
T Consensus 388 ---~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~-- 461 (504)
T PLN02760 388 ---NIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAE-CKKRGMLVRVA-- 461 (504)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHH-HHhCCcEEEec--
Confidence 3445555555555555554311111 1122336666666633110 00 000 2234444 45679999774
Q ss_pred CCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 387 VGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 387 ~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.+|+++. +++++|++++++++++++++.
T Consensus 462 ---g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 462 ---GDNIMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 257899977 899999999999999987763
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=179.58 Aligned_cols=349 Identities=14% Similarity=0.055 Sum_probs=215.9
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|++.+++.+++.+..... ......+.+..+++.+.+..+ ...+.++|+++|++
T Consensus 51 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~~~~--~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGse 125 (453)
T PRK06943 51 RDGRRYLDAISSWWVNLFG-HANPRINAALKDQLDTLEHAM--LAGCTHEPAIELAERLAALTG--GTLGHAFFASDGAS 125 (453)
T ss_pred CCCCEEEEcchHHHHhcCC-CCCHHHHHHHHHHHHhcCCcc--ccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCCHH
Confidence 4689999998885443222 457899999999997632111 101112344445555544322 22358999999999
Q ss_pred HHHHHHHHhc-------CC-CCEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCC--cc--------
Q 014603 122 AIEVILTVLA-------RP-GANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKG--WE-------- 170 (422)
Q Consensus 122 a~~~~~~~l~-------~~-gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~--~~-------- 170 (422)
|++.+++... .+ ..+|+....+||+....+..... .+..++.....+ +.
T Consensus 126 Ave~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 205 (453)
T PRK06943 126 AVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAA 205 (453)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHH
Confidence 9999988752 12 36899999999987533332111 111222111000 00
Q ss_pred cCHHHHHHhhc--CCceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 171 VDLDAVEALAD--ENTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 171 ~d~~~l~~~~~--~~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
-+++.+++.+. .+..+.++..| +...|. .+|++.++++.++|++||+++|.||++.++.++|... ....++..+
T Consensus 206 ~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f-a~~~~gv~P 284 (453)
T PRK06943 206 RALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF-ACEQAGVWP 284 (453)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh-HHHhCCCCC
Confidence 12356666664 24456666777 566676 5688889999999999999999999999987777532 223344444
Q ss_pred CeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh-------hhhccCcchHHHHHHHHHHhhchHHHHHH
Q 014603 246 PVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF-------LNISSDPATFIQGAVPQILEKTEEEFFSK 317 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 317 (422)
+++++ +|.+ ..| +++|.++++ +++.+.+... ...+.+.++++++++.+.|+...++.
T Consensus 285 Divt~---gKgl-~gG~~Pi~av~~~--------~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~--- 349 (453)
T PRK06943 285 DFLCL---SKGI-SGGYLPLSLVLSR--------DAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDD--- 349 (453)
T ss_pred CeEee---ehhh-ccCcccceEEEEc--------HHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcC---
Confidence 44554 6995 468 599999986 4677766421 22345678999999999998754322
Q ss_pred HHHHHHHHHHHHHHHhhc---CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEE
Q 014603 318 ITDILRETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLR 394 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR 394 (422)
..++.+++-+++.+.|++ .+.+. . ...-|.++.+.+.............+... +.++||++.+.. +.+|
T Consensus 350 l~~~~~~~G~~l~~~L~~l~~~~~v~-~-vrG~Gl~~gvel~~~~~~~~~~~~~i~~~-~~~~Gll~~~~g-----~~l~ 421 (453)
T PRK06943 350 VLARNARKSARLRAALAPLAAHPQVR-H-LRQRGTIFAFDVALDGDAARTFSRRFFEA-ALERELLLRPIG-----TTVY 421 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEE-e-EeccccEEEEEEccCCCcchHHHHHHHHH-HHHCCcEEEecC-----CEEE
Confidence 233344444444444443 44433 1 23446677777742110000012334444 466799997642 4699
Q ss_pred EEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 395 ITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 395 is~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+++. .++++|++++++|+++++++.
T Consensus 422 ~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (453)
T PRK06943 422 LMPPYVLDDDEIAWLAERTRATLDATL 448 (453)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 9966 899999999999999998764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-20 Score=176.25 Aligned_cols=351 Identities=13% Similarity=0.122 Sum_probs=213.0
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-PDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~~g~~ 120 (422)
.+|+.++||..|......+ ..+|.|.+++.+++.+... +.......+....+++.|.+..+ .. .+.++|+++|+
T Consensus 39 ~dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~~lae~L~~~~p--~~~~~~v~f~~SGs 113 (445)
T PRK08593 39 VDGKTYIDLLASASSQNVG-HAPPRVVEAIKAQADKFIH--YTPAYMYHEPLVRLAKKLCELAP--GDFEKRVTFGLSGS 113 (445)
T ss_pred CCCCEEEECCccHHhhcCC-CCCHHHHHHHHHHHHhccC--ccccccCCHHHHHHHHHHHHhCC--CCCCCEEEECCchH
Confidence 3689999998886543333 3689999999999876322 11111112333444555543222 12 25899999999
Q ss_pred HHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCCCC--cc-cC-------HH
Q 014603 121 QAIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPAKG--WE-VD-------LD 174 (422)
Q Consensus 121 ~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~--~~-~d-------~~ 174 (422)
+|++.+++... ....+|+..+.+||+....+... +. ++..+|...... +. .+ ++
T Consensus 114 eA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (445)
T PRK08593 114 DANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLA 193 (445)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHH
Confidence 99999988532 12357899999999875443311 10 122232211000 00 01 13
Q ss_pred HHHHhhc----CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeE
Q 014603 175 AVEALAD----ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL 248 (422)
Q Consensus 175 ~l~~~~~----~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i 248 (422)
.+++.+. .+..+.++..| ....|.. +|.+.+++|.++|++||+++|+||++.++.++|... ....++..++
T Consensus 194 ~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~-a~~~~gv~pD-- 270 (445)
T PRK08593 194 PLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS-SISHFNITPD-- 270 (445)
T ss_pred HHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH-HHHhcCCCCC--
Confidence 3444332 23455666666 5666775 788899999999999999999999998887766431 1222332233
Q ss_pred EEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
+.+++|.++ .|+++|+++++ +++++.+.... ..+...++++++++.+.|+...++ +..++++++.+
T Consensus 271 -i~t~gK~l~-~G~p~gav~~~--------~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~ 337 (445)
T PRK08593 271 -LMSFGKSLA-GGMPMSAIVGR--------KEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDE---SLLQRSAEKGE 337 (445)
T ss_pred -Eeeeccccc-CCcccEEEEEc--------HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 336789964 67999999986 46777664322 235577888999888888764422 23444444445
Q ss_pred HHHHHhhc----CCCCCCCCCCCCceEEEEecCcccccCCCC---HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--
Q 014603 328 ICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA-- 398 (422)
Q Consensus 328 ~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-- 398 (422)
++++.|++ +|.+. . ...-|.++.+.+.........+ ...+...+ .++||++.+.. .+.+|++++
T Consensus 338 ~l~~~L~~l~~~~~~v~-~-vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~~----~~~lr~~p~l~ 410 (445)
T PRK08593 338 YARKRFDQWVSKYNFVG-D-VRGYGLSIGIDIVSDKKLKTRDNEAALKICNYC-FEHGVVIIAVA----GNVLRFQPPLV 410 (445)
T ss_pred HHHHHHHHHHhcCCcEE-E-EeccceEEEEEEecCCCcCCCcHHHHHHHHHHH-HHCCeEEeccC----CCEEEEECCCc
Confidence 55555543 43222 1 2333556556553210000001 23344444 56799997632 368999987
Q ss_pred cChHHHHHHHHHHHHHHHHhcc
Q 014603 399 VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+++++++++++++.++++++.+
T Consensus 411 ~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 411 ITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred cCHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999987644
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=179.12 Aligned_cols=350 Identities=15% Similarity=0.104 Sum_probs=216.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|++.+++.+++.+.... ........+.+..+++.|.+.. +.+.+.++|+++|++
T Consensus 43 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~~~~~~-~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGSE 118 (459)
T PRK05965 43 ASGHQLLDAFAGLWCVNVG-YGQESIVEAAAEQMRELPYA-TGYFHFGSEPAIRLAAKLAERA--PGSLNHVYFTLGGSD 118 (459)
T ss_pred CCCCEEEECcccHHhccCC-CCCHHHHHHHHHHHHhcCCc-ccccccCCHHHHHHHHHHHhhC--CCCcCEEEEeCChhH
Confidence 4689999998886543233 35799999999999763210 0000111233344555554432 223468999999999
Q ss_pred HHHHHHHHhcC-------C-CCEEEecCCCccchHHHHhhC-CC------------eEEEeeccCC--CCcccC------
Q 014603 122 AIEVILTVLAR-------P-GANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPA--KGWEVD------ 172 (422)
Q Consensus 122 a~~~~~~~l~~-------~-gd~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~--~~~~~d------ 172 (422)
|++.+++.... + ..+|+....+||+....+... +. .+..++.... ..+.-|
T Consensus 119 Ave~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (459)
T PRK05965 119 AVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIA 198 (459)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHH
Confidence 99999876431 2 257999999999875432221 11 0112221100 001112
Q ss_pred --HHHHHHhhcC---CceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 173 --LDAVEALADE---NTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 173 --~~~l~~~~~~---~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
++.+++.+.. +..+.+|..| +...|. .+|.+.++++.++|++||+++|.||++.++.++|... ....++..+
T Consensus 199 ~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv~P 277 (459)
T PRK05965 199 ASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-ACEAEGVVP 277 (459)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhh-hHhhcCCCC
Confidence 2456666642 4556667777 555666 5678889999999999999999999999988877542 333444444
Q ss_pred CeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 246 PVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
+++++ +|.+ ..| +++|.++++ +++++.+... ...+.+.++++++++.+.|+...++.
T Consensus 278 Div~~---gKgl-~gG~~Pi~av~~~--------~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~-- 343 (459)
T PRK05965 278 DLMTV---AKGL-TSGYVPMGAVLMS--------DHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGG-- 343 (459)
T ss_pred CeEEe---chhh-ccCCcceeEEEEc--------HHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhcc--
Confidence 44444 6995 567 599999986 4677766431 22355788999999999988654322
Q ss_pred HHHHHHHHHHHHHHHHhhc---CCCCCCCCCCCCceEEEEecCccc-c-cCCC----CHHHHHHHHHHhcCeEEecCCCC
Q 014603 317 KITDILRETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSL-L-EGIN----SDMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~~~~~-~-~~~~----~~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
..++.++.-+++.+.|++ .|.+. - ...-|.++.+.+.... . .... ....+.. .+.++|+++.+..
T Consensus 344 -l~~~~~~~g~~l~~~l~~l~~~~~v~-~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~-~~~~~Gll~~~~g-- 417 (459)
T PRK05965 344 -LLANGQKAGPRFAAGLDALRAHPLVG-D-VRGRGLLGALELVADKATKTPFDAALDPADRIFD-RAYANGLVFRAFG-- 417 (459)
T ss_pred -HHHHHHHHHHHHHHHHHhhccCCCEE-E-EeecceEEEEEEeccccccCCCCchhHHHHHHHH-HHHhCCeEEEecC--
Confidence 333444555555555554 33222 1 2334666667663211 0 0000 0223333 3466799997632
Q ss_pred CCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 388 GLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 388 ~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+.+|+.+. .++++++++++++.++++++
T Consensus 418 --~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 418 --DGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred --CcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 467899987 78999999999999999875
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-20 Score=166.09 Aligned_cols=310 Identities=21% Similarity=0.252 Sum_probs=212.9
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCC
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRP 142 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~ 142 (422)
..+..+++.+.+.++.... ++ ...++++++++|+ .....+.++++|.|+.+++.++ .++||+|++++.
T Consensus 14 ~~~e~~~v~~vl~sg~i~~-G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~ 82 (374)
T COG0399 14 GEEELAAVQEVLKSGWLTG-GP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSF 82 (374)
T ss_pred chHHHHHHHHHHHcCCeec-Ch--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCC
Confidence 3567788888888766544 43 4689999999999 4578999999999999999966 589999999999
Q ss_pred CccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEc
Q 014603 143 GFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222 (422)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 222 (422)
+|..........|++++.+.+++ +.+.+|++.+|+.+++++++|+.++- .|.. .++++|.++|++||++||+|
T Consensus 83 TfvATan~i~~~Ga~PVFvDid~-~T~nid~~~ie~aIt~~tKAIipVhl---~G~~---~dm~~i~~la~~~~l~vIED 155 (374)
T COG0399 83 TFVATANAVLLVGAKPVFVDIDP-DTLNIDPDLIEAAITPRTKAIIPVHL---AGQP---CDMDAIMALAKRHGLPVIED 155 (374)
T ss_pred chHHHHHHHHHcCCeEEEEecCC-cccCCCHHHHHHHcccCCeEEEEehh---ccCC---CCHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999999986 46789999999999999999986654 4444 37888899999999999999
Q ss_pred ccccccc-cCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccC-----
Q 014603 223 EVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSD----- 294 (422)
Q Consensus 223 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 294 (422)
.+++... |.|+. +..++. +.++||. |.+... --|.+++++ +++.++++......-.
T Consensus 156 aAqa~Ga~y~gk~---vGt~Gd----~~~fSF~~~K~ittg--EGGav~tnd-------~ela~k~~~lr~hG~~~~~~~ 219 (374)
T COG0399 156 AAQAHGATYKGKK---VGSFGD----IGAFSFHATKNLTTG--EGGAVVTND-------EELAEKARSLRNHGLSRDAVF 219 (374)
T ss_pred cchhccCeecCcc---cccccc----eEEEEecCCCCcccc--CceEEEeCC-------HHHHHHHHHHHHhCcCCCccc
Confidence 9998643 34442 333332 4555554 775433 348888876 6787777665432111
Q ss_pred ------------cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE----EEEecCcc
Q 014603 295 ------------PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF----VMVKLNYS 358 (422)
Q Consensus 295 ------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~----~~~~~~~~ 358 (422)
.+.+.++.+..-| +.+++..++-++..+.+.+.|++++++.....+.+... +.+.++..
T Consensus 220 ~y~~~~~G~N~rm~~iqAAigl~QL-----~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~ 294 (374)
T COG0399 220 KYLHEELGYNYRLTEIQAAIGLAQL-----ERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE 294 (374)
T ss_pred cceeeecccccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC
Confidence 1111222222223 34677777777888888899998876654434443322 22233321
Q ss_pred cccCCCCHHHHHHHHHHhcCeE----EecCCCC--------C---C--------CCeEEEEec--cChHHHHHHHHHHHH
Q 014603 359 LLEGINSDMEFALKLAKEESVI----VLPGITV--------G---L--------KDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~gi~----v~~g~~~--------~---~--------~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
..+-..+ ...+++.||. ..|-+.. . . ...+.+-+. .+++++++.++.|++
T Consensus 295 ----~~~R~~l-~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~ 369 (374)
T COG0399 295 ----GISRDAL-MESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKE 369 (374)
T ss_pred ----CCCHHHH-HHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 1123444 4445776544 3442211 0 0 244555554 678999999999998
Q ss_pred HHHH
Q 014603 414 FYDR 417 (422)
Q Consensus 414 ~~~~ 417 (422)
++.+
T Consensus 370 ~~~~ 373 (374)
T COG0399 370 VLGS 373 (374)
T ss_pred Hhcc
Confidence 8753
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-20 Score=172.19 Aligned_cols=220 Identities=12% Similarity=0.130 Sum_probs=165.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~ 162 (422)
+....|++.++++- ..+..++++||++|++.++.+++++||+|+++...|.++...+ +..|+++..++
T Consensus 62 Pt~~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd 133 (395)
T PRK08114 62 LTHFSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFD 133 (395)
T ss_pred hhHHHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEEC
Confidence 34567788888764 3457888888999999999999999999999999997765543 56788887765
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC--cEEEEcccccccccCCCCCCCccc
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG--IMVIADEVYDHLAFGNTPFVPMGV 240 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~--~~li~D~~~~~~~~~~~~~~~~~~ 240 (422)
. .|.+.+++.++++++++++.+|+||+|.+ .++++|+++|+++| +++++|.+++. +.. .....
T Consensus 134 ~-------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v---~DI~~Ia~ia~~~g~g~~lvVDnT~a~----p~~-~~pl~ 198 (395)
T PRK08114 134 P-------LIGADIAKLIQPNTKVVFLESPGSITMEV---HDVPAIVAAVRSVNPDAVIMIDNTWAA----GVL-FKALD 198 (395)
T ss_pred C-------CCHHHHHHhcCCCceEEEEECCCCCCCEe---ecHHHHHHHHHHhCCCCEEEEECCCcc----ccc-cCHHH
Confidence 2 36788999999899999999999999999 57899999999984 99999999975 222 23334
Q ss_pred cCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHH
Q 014603 241 FGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 241 ~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
++.| +++.|.+|.+++++ .-.|.++.+ ++..+.+..... .....++...+.+..-|+. +.-+
T Consensus 199 ~GaD---ivv~S~tKyl~Ghsdv~~G~v~~~--------~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-----L~lR 262 (395)
T PRK08114 199 FGID---ISIQAGTKYLVGHSDAMIGTAVAN--------ARCWEQLRENSYLMGQMVDADTAYMTSRGLRT-----LGVR 262 (395)
T ss_pred cCCc---EEEEcCcccccCCCcceeEEEEcC--------HHHHHHHHHHHHhccCCCCHHHHHHHHcCCCc-----HHHH
Confidence 5555 99999999887765 567766553 344454543332 2335666777766666665 6677
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 319 TDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
.++..++...+.+.|+++|.+.-+.+|
T Consensus 263 ~~~~~~na~~va~~L~~hp~V~~V~yP 289 (395)
T PRK08114 263 LRQHEESSLKVAEWLAEHPEVARVNHP 289 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCEeEEECC
Confidence 788889999999999998876534444
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-20 Score=173.28 Aligned_cols=338 Identities=14% Similarity=0.079 Sum_probs=217.1
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE--ecCHHHHHHHHHHHhc--------
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL--TLGCTQAIEVILTVLA-------- 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l~-------- 131 (422)
++.|++.+.|...+.....+... .....++++.+.+++.+.+|.+-..+++.+ |+|||+|++.++.+..
T Consensus 52 ~~~p~~~~~~~~~l~~~~~np~s-~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~ 130 (431)
T TIGR01788 52 WMEPEARKLMDETINKNMIDKDE-YPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME 130 (431)
T ss_pred CCCHHHHHHHHHHHhcCCCCccc-CccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889998888643222111 222336666666666655553211134544 8999999998876542
Q ss_pred CCC-----CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHH
Q 014603 132 RPG-----ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQ 206 (422)
Q Consensus 132 ~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~ 206 (422)
..| ..|+++...|+++...++..|++++.+++++ +++.+|++.|++.+++++.+++++..+|.||.+ ++++
T Consensus 131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~i---dpi~ 206 (431)
T TIGR01788 131 AAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEY---EDVK 206 (431)
T ss_pred hcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCccc---CCHH
Confidence 111 3799999999999999999999999999865 345789999999999899999999999999999 6788
Q ss_pred HHHHHHHHc------CcEEEEccccccccc---CCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcc
Q 014603 207 KIAETAKKL------GIMVIADEVYDHLAF---GNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGIL 276 (422)
Q Consensus 207 ~i~~~~~~~------~~~li~D~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~ 276 (422)
+|+++|+++ |+++++|.+|+++.. .++....+..... ..+..|.+|++ +..| +|+++.+++.
T Consensus 207 ~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~---DSis~s~HK~~~~P~g--~G~l~~r~~~--- 278 (431)
T TIGR01788 207 ALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRV---KSINVSGHKYGLVYPG--VGWVIWRDEE--- 278 (431)
T ss_pred HHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCc---eEEEECchhccCCCCC--cEEEEEeChH---
Confidence 888899999 999999999985331 1222222221111 25667999984 4445 8999887531
Q ss_pred cchhHHHHHHh---hhh-----hccCcchH--HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-C
Q 014603 277 QDSGIVDSIKS---FLN-----ISSDPATF--IQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK-P 345 (422)
Q Consensus 277 ~~~~~~~~~~~---~~~-----~~~~~~~~--~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~ 345 (422)
.+.+.+.. +.. .+...+.. .....-..|.......+.+..++..++.+++.+.|++.|+++++.. |
T Consensus 279 ---~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~ 355 (431)
T TIGR01788 279 ---ALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGS 355 (431)
T ss_pred ---HcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCC
Confidence 11122111 000 00111111 1111122233333577888999999999999999999988885533 3
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---CCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
..+ .+.++++.... ...+..++.+.| .+.|+.+....... ..-.+|+++. .+.+.++.++..|+.++.++
T Consensus 356 ~~~-iV~Fr~~~~~~-~~~~~~~l~~~L-~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 356 GIP-LVAFKLKDDAD-PGYTLYDLSHRL-RERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred Cce-EEEEEeCCCCC-CCcCHHHHHHHH-HHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 333 44445542110 011455666665 56798753322211 1346899985 67889999999999988654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=173.24 Aligned_cols=313 Identities=15% Similarity=0.121 Sum_probs=213.8
Q ss_pred CCcHHHHHHHHHHhhCC---C-----CCCCCC--CCCCHHHHHHHHHHHhhcCCCCC-CCCCE-EEecCHHHHHHHHHHH
Q 014603 62 RTASVAVDAIVHSVRSA---R-----FNCYSS--TVGILPARRAIADYLNRDLPYKL-SPDDV-YLTLGCTQAIEVILTV 129 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~---~-----~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~~~i-~~~~g~~~a~~~~~~~ 129 (422)
+.|+.|++++.+.+.+. . .....+ ..-+.+.++.++++++ . +..++ +++++|+.++++++..
T Consensus 13 ~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~------~~~~~~v~~~~gsgt~~~Ea~~~n 86 (360)
T PRK05355 13 MLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLN------IPDNYKVLFLQGGASLQFAMVPMN 86 (360)
T ss_pred CCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEEcCCchHHHHHHHHh
Confidence 67899999999886321 0 011111 0234566667777663 2 22345 5557789999999999
Q ss_pred hcCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHH-hhcCCceEEEEeCCCCCcccccCHHHHH
Q 014603 130 LARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEA-LADENTVALVIINPGNPCGNVYTYQHLQ 206 (422)
Q Consensus 130 l~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~i~i~~p~nptG~~~~~~~l~ 206 (422)
++.+|+++++...+.++ +...++..|.. ..+...+..+ ..+..++++ .++++++++.+++..+.||+..+ ++.
T Consensus 87 l~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g-~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~i~ 162 (360)
T PRK05355 87 LLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDG-FTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--ELP 162 (360)
T ss_pred cCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccC-CCCCCChhhccCCCCCCEEEEccCCCcceEecC--ccc
Confidence 99999998887766644 46677788854 4454432122 234444444 67778899999999999999974 455
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH
Q 014603 207 KIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286 (422)
Q Consensus 207 ~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 286 (422)
+| +|+++|+|.+++. |..+.++..++ ++++|.+|.||.+| +|++++++ +..+++.
T Consensus 163 ~i------~g~l~vVDavss~----g~~~idv~~~d-----~~~~ssqK~lgP~G--lg~l~~s~--------~~l~~~~ 217 (360)
T PRK05355 163 DT------GDVPLVADMSSDI----LSRPIDVSKFG-----LIYAGAQKNIGPAG--LTIVIVRE--------DLLGRAL 217 (360)
T ss_pred cc------CCCcEEEEcCccc----cCccCCHHHcc-----EEEEeccccccCCc--eEEEEECH--------HHHhhcc
Confidence 55 7999999999987 44444554432 88899999998777 78888863 3333332
Q ss_pred h-----------h--hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCceE
Q 014603 287 S-----------F--LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKKP--EGSMF 350 (422)
Q Consensus 287 ~-----------~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~ 350 (422)
. . ....++|+....+++.++|+...+. .++.+.++.+++.+.+++.|++++.+.....+ ..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v 297 (360)
T PRK05355 218 PSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMN 297 (360)
T ss_pred cCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcE
Confidence 2 0 1124688888999999999876666 79999999999999999999998633322111 22234
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
..+.++.. ....++... +.++|+.+.+|.. ..+.+|+|+. ++.+||+++++.|++++++
T Consensus 298 ~sf~~~~~-----~~~~~~~~~-~~~~Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 298 VPFTLADE-----ELDKKFLAE-AKAAGLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred EEEEcCCh-----HHHHHHHHH-HHHCCCcccCCCC--ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 44555532 122344344 4567999866653 3578999997 7899999999999998765
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-20 Score=172.17 Aligned_cols=342 Identities=11% Similarity=0.044 Sum_probs=221.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC------CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC------YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
.+.|+|--.. | -.++.+++++...+.+....+ |+....+.+++....+...+.++ .+..+|-.- |
T Consensus 49 ~~~l~LiasE-----N-~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~-S 119 (493)
T PRK13580 49 RSSLKLIASE-----N-YSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPH-S 119 (493)
T ss_pred hcCceEeccc-----c-cCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCC-C
Confidence 5667774443 2 356889898887776543323 33344566777666666666554 333344444 5
Q ss_pred HHHHHHHHHHHhcCC-------------------------------CCEEEecCCCccchHH---HHhhCC--CeEEEee
Q 014603 119 CTQAIEVILTVLARP-------------------------------GANILLPRPGFPYYEA---RATHSH--LEVRHFD 162 (422)
Q Consensus 119 ~~~a~~~~~~~l~~~-------------------------------gd~Vl~~~~~~~~~~~---~~~~~g--~~~~~~~ 162 (422)
|+.|+.+++.++++| ||+|+..++.+.+... .....+ ..++.++
T Consensus 120 g~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~ 199 (493)
T PRK13580 120 GADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYG 199 (493)
T ss_pred cHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecc
Confidence 577888888888876 7999988766643311 111122 4566677
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC-Ccccc
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV-PMGVF 241 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~ 241 (422)
++++ ...+|.+.+++.+.++++.++++..+|-++ .. ++++|.++|+++|+++++|++|+.....+.... .....
T Consensus 200 vd~~-~g~iD~d~l~~~~~~~~plvii~g~S~~~~-~~---dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~ 274 (493)
T PRK13580 200 VDPD-TGLLDYDEIAALAREFKPLILVAGYSAYPR-RV---NFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV 274 (493)
T ss_pred cCcc-cCccCHHHHHHHHhhcCCEEEEeCccccCC-Cc---CHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCC
Confidence 6643 356999999999998999999998887655 42 688889999999999999999987555432211 00111
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
. ...++++|++|++. |.+.|+++++ +++.+.+.... ...+++.+...++...++.+..+....+.++
T Consensus 275 ~--~~D~vtgT~hKaL~--GP~GG~I~~~--------~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~ 342 (493)
T PRK13580 275 P--HADIVTTTTHKTLR--GPRGGLVLAK--------KEYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQ 342 (493)
T ss_pred C--CCcEEEeCChhhcc--CCCeEEEEec--------HHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHH
Confidence 1 12288999999863 3334888885 45667664332 2234554455555555555432223366788
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC------CCeEE
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------KDWLR 394 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~------~~~iR 394 (422)
++.++.+.|.+.|++. |+.++........+++.+.... .....+...|.+.||.+.+...+.. ...+|
T Consensus 343 ~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~-----~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLR 416 (493)
T PRK13580 343 QVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFG-----LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIR 416 (493)
T ss_pred HHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHH-----HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEE
Confidence 9999999999999987 7763322233456677775321 1333455566788999987655433 45799
Q ss_pred EEec--c----ChHHHHHHHHHHHHHHHHh
Q 014603 395 ITFA--V----EPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 395 is~~--~----~~~~l~~~~~~l~~~~~~~ 418 (422)
|++. + ++++++++++.|.++++..
T Consensus 417 Ig~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 417 LGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred eccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 9986 2 5799999999999988653
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-20 Score=175.95 Aligned_cols=354 Identities=15% Similarity=0.071 Sum_probs=219.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCC---CCCCCEEEecC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK---LSPDDVYLTLG 118 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~---~~~~~i~~~~g 118 (422)
.+|+.+|||..|......+ ..+|++.+++.+++..-.. ........+.+..+++.+....+.. .+.+.++++++
T Consensus 61 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~~l~~--~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~s 137 (472)
T PRK08742 61 HDGRRYLDAVSSWWTNLFG-HAEPRIGAAIAAQAGELEQ--VMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADN 137 (472)
T ss_pred CCCCEEEEcCccHHhccCC-CCCHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCC
Confidence 4688999999886543233 4578999999999864211 1111111234455565555432211 12358999999
Q ss_pred HHHHHHHHHHHhcC-------C-CCEEEecCCCccchHHHHhhCCCe-------------EEEeeccCCC--Ccc-----
Q 014603 119 CTQAIEVILTVLAR-------P-GANILLPRPGFPYYEARATHSHLE-------------VRHFDLLPAK--GWE----- 170 (422)
Q Consensus 119 ~~~a~~~~~~~l~~-------~-gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~--~~~----- 170 (422)
|++|++.+++.... + ..+|+....+||+....+...... +..+|..... .++
T Consensus 138 GSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~ 217 (472)
T PRK08742 138 GSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAED 217 (472)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHH
Confidence 99999999886521 2 268999999999876444432211 1112211000 001
Q ss_pred ---cCHHHHHHhhc--CCceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 171 ---VDLDAVEALAD--ENTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 171 ---~d~~~l~~~~~--~~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+++.+++.+. .+..+.+|..| +...|. .+|++.++++.++|++||+++|.||++.++.++|... ....++
T Consensus 218 ~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~-a~e~~g 296 (472)
T PRK08742 218 YALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLF-ACEQAG 296 (472)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-HHHhcC
Confidence 12455666653 24566677777 456676 5678889999999999999999999999988877543 233344
Q ss_pred CCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh-------hhhccCcchHHHHHHHHHHhhchHHH
Q 014603 243 SIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF-------LNISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
..++++++ +|.+ ..| +++|.++++ +++.+.+... ...+.+.++++++++.+.|+...++.
T Consensus 297 v~PDiv~~---gKgl-~gG~~Plaav~~~--------~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~ 364 (472)
T PRK08742 297 VMPDLLCL---SKGL-TGGFLPLSAVLAT--------QQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDD 364 (472)
T ss_pred CCCCEEEE---cccc-cCCCCCcceeecc--------HHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCC
Confidence 44444544 6995 567 489999986 4676666421 22345678999999999998755444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc-c-CCCC----HHHHHHHHHHhcCeEEecCCCCC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-E-GINS----DMEFALKLAKEESVIVLPGITVG 388 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~~----~~~~~~~l~~~~gi~v~~g~~~~ 388 (422)
+.+..++..+....+.+.++++|.+. . ...-|.++.+.+..... . .... ...+... +.++||++.+.
T Consensus 365 l~~~~~~~g~~l~~~~~~~~~~~~i~-d-vRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gll~~~~---- 437 (472)
T PRK08742 365 VIARNQPTAARMTQLAAQIGEHPHVA-D-VRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRA-ALARGVVLRPL---- 437 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCee-e-EeccceEEEEEeccCccccccCCchhHHHHHHHHH-HHHCCeEEEec----
Confidence 43333333333334444455555433 1 23447777777742110 0 0000 1233443 45679999873
Q ss_pred CCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 389 LKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 389 ~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.+|+.+. .+++++++++++|++++++.-
T Consensus 438 -g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 438 -GDVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 268999998 789999999999999998753
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=173.02 Aligned_cols=351 Identities=17% Similarity=0.140 Sum_probs=212.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|...... -..+|.+.+++.+++.+... ........+.+..+++.|.+..+ ...+.++++++|++
T Consensus 43 ~dG~~ylD~~~g~~~~~l-Gh~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGse 117 (442)
T PRK13360 43 HDGRRVLDGTAGLWCVNA-GHGRPEIVEAVRAQAGELDY--APAFQMGHPKAFELANRIAEIAP--GGLNHVFFTNSGSE 117 (442)
T ss_pred CCCCEEEECchhHHHhcc-CCCCHHHHHHHHHHHHhCCC--cccCCcCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHH
Confidence 368999999888644322 24678999999999875211 11111112334445555544222 23468999999999
Q ss_pred HHHHHHHHhcC-------C-CCEEEecCCCccchHHHHhhC-C------------CeEEEeeccCC---CCccc------
Q 014603 122 AIEVILTVLAR-------P-GANILLPRPGFPYYEARATHS-H------------LEVRHFDLLPA---KGWEV------ 171 (422)
Q Consensus 122 a~~~~~~~l~~-------~-gd~Vl~~~~~~~~~~~~~~~~-g------------~~~~~~~~~~~---~~~~~------ 171 (422)
|++.+++.... + ..+|+....+||++...+... + ..+..+|.... ..+..
T Consensus 118 A~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 197 (442)
T PRK13360 118 SVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHG 197 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHH
Confidence 99999875431 2 258999999999875433211 1 01122222100 00111
Q ss_pred --CHHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 172 --DLDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 172 --d~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
..+.+++.+. .+..+.+++.| +...|.. +|.+.+++|.++|++||+++|+||++.++..+|... ....++..
T Consensus 198 ~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~ 276 (442)
T PRK13360 198 AELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF-AAQYFGVT 276 (442)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcCCC
Confidence 1346666663 24456667777 5556664 677889999999999999999999998877766542 22233333
Q ss_pred CCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
++++ +++|.++...+++|.++++ +++.+.+... ...+.+.++++.+++.+.|+...+.
T Consensus 277 PDiv---t~gK~l~gG~~P~gav~~~--------~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~--- 342 (442)
T PRK13360 277 PDLL---TCAKGLTNGAIPMGAVFVS--------SEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE--- 342 (442)
T ss_pred Ccee---eeeeccccCccceEEEEEc--------HHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC---
Confidence 3333 5689964433789998885 4676665431 2234567888999999888764322
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEE
Q 014603 317 KITDILRETADICCDRLKEIPCITCPK-KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI 395 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi 395 (422)
...++++++.+++.+.|+++.....+. ...-|.+..+.+............++...+ .++||++.++ .+.+|+
T Consensus 343 ~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l-~~~Gvl~~~~-----~~~lr~ 416 (442)
T PRK13360 343 GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKC-FEKGLMIRYT-----GDILAL 416 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHH-HHCCcEEEec-----CCEEEE
Confidence 244555566666666666542111111 122244444455321100011234555554 5679999764 367999
Q ss_pred Eec--cChHHHHHHHHHHHHHHHHh
Q 014603 396 TFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 396 s~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+++ +++++|++++++|.+++++.
T Consensus 417 ~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 417 SPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred eCCCccCHHHHHHHHHHHHHHHHHh
Confidence 976 78999999999999998764
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-20 Score=172.62 Aligned_cols=330 Identities=13% Similarity=0.119 Sum_probs=208.4
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|++.+++.+++.+... +.+. ...+.+..+++.+.+.. ..+.+++++++++
T Consensus 21 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~~~~--~~~~-~~~~~~~~la~~l~~~~----~~~~v~~~~SGse 92 (364)
T PRK04013 21 SQGRRYLDLIAGIGVNVLG-HNHPEWVEEMSEQLEKLVV--AGPM-FEHEEKEEMLEELSKWV----NYEYVYMGNSGTE 92 (364)
T ss_pred CCCCEEEEcccChhhccCC-CCCHHHHHHHHHHHHhcCC--ccCC-cCCHHHHHHHHHHHhhc----CCCEEEEeCchHH
Confidence 3689999998886443222 3568999999999986321 1111 11233334444443322 2358999999999
Q ss_pred HHHHHHHHhc-CCC-CEEEecCCCccchHHHHhhC-CCeEE---EeeccCC---CCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 122 AIEVILTVLA-RPG-ANILLPRPGFPYYEARATHS-HLEVR---HFDLLPA---KGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 122 a~~~~~~~l~-~~g-d~Vl~~~~~~~~~~~~~~~~-g~~~~---~~~~~~~---~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
|++.+++... ..| ++|+..+.+|++....+... +.... .-|..+. -.+ .|++.+++.+.+++.++++...
T Consensus 93 A~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-~d~~~l~~~i~~~~aAvivEpi 171 (364)
T PRK04013 93 AVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-NDVEAAKEAITKETAAVIFEPI 171 (364)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-CCHHHHHHHhcCCcEEEEEcCC
Confidence 9999998653 234 89999999999875444331 11000 0010000 011 2678888888766666655544
Q ss_pred CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
+...|. .++.+.++++.++|++||+++|+||++.++ ++|... ....++..+++++ ++|.++ .|+++|.++.+.
T Consensus 172 ~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~-a~~~~gv~PDiv~---~gK~lg-gG~P~~a~~~~~ 245 (364)
T PRK04013 172 QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFL-AIEHYKVEPDIVT---MGKGIG-NGVPVSLTLTNF 245 (364)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchh-HHHhcCCCCCEEE---eccccc-CCceeEEEEecc
Confidence 555565 456788999999999999999999999987 666532 2333343344444 479964 579999998753
Q ss_pred CCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEE
Q 014603 272 PNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFV 351 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 351 (422)
++.. .....+...++++++++.+.|+...++.+.+..+ +. +. .+.. +.+. . ...-|.++
T Consensus 246 --------~~~~---~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~---~~---l~-~l~~-~~v~-~-vRG~Gl~~ 304 (364)
T PRK04013 246 --------DVER---GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAG---EK---FI-EIKG-ERVV-T-TRGRGLMI 304 (364)
T ss_pred --------cccC---CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHH---HH---HH-Hhcc-Ccce-e-eeeCcEEE
Confidence 2211 1233456788999999999998754333222222 21 22 2222 3222 1 23447787
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.+.. ....+... +.++|+++.+.. .+.+|+.++ .+++++++++++|++++++..
T Consensus 305 gve~~~-------~~~~i~~~-~~~~Gll~~~~g----~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 305 GIVLKK-------PVGKYVEE-LQNRGYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred EEEeCC-------cHHHHHHH-HHhCCcEEeeCC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 777753 23445444 456799997642 478999998 789999999999999997653
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=177.14 Aligned_cols=338 Identities=12% Similarity=0.071 Sum_probs=211.3
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC------CCCCHH----HHHHHHHHHhhcCCCCCCCCCEE
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS------TVGILP----ARRAIADYLNRDLPYKLSPDDVY 114 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~----lr~~ia~~l~~~~~~~~~~~~i~ 114 (422)
...|+|--.. + .++|.+++++...+.+.....++. ...... .|+.+++++ +.+++++.
T Consensus 34 ~~~l~l~~se-----n-~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf------~a~~~~~~ 101 (452)
T PTZ00094 34 IEGLELIASE-----N-FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF------GLDPEEWG 101 (452)
T ss_pred HcCeeEeccc-----c-cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh------CCCcccce
Confidence 5678886654 2 456889999988876532112221 111222 345677777 34666776
Q ss_pred Ee---cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhh--------CC--CeEEEeeccCCCCcccCHHHHHHhhc
Q 014603 115 LT---LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATH--------SH--LEVRHFDLLPAKGWEVDLDAVEALAD 181 (422)
Q Consensus 115 ~~---~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~--------~g--~~~~~~~~~~~~~~~~d~~~l~~~~~ 181 (422)
++ +||++++..++.+++++||+|++....|.+....+.. .+ .++..+++++ ++.+|++.|++.++
T Consensus 102 ~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~id~~~L~~~l~ 179 (452)
T PTZ00094 102 VNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE--KGLIDYDKLEELAK 179 (452)
T ss_pred eecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC--CCCcCHHHHHHHHH
Confidence 66 7899999999999999999999988888665332211 11 2233444433 35689999999885
Q ss_pred C-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC-CCCccccCCCCCeEEEecCccccCC
Q 014603 182 E-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP-FVPMGVFGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 182 ~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~s~sK~~~~ 259 (422)
+ +++.+++. ++.+|... ++++|.++|+++|+++++|++|+.....+.. ..++. +. .++++|++|++++
T Consensus 180 ~~~~~lvi~~--~s~~g~~~---di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~--~~---D~l~~S~hK~l~G 249 (452)
T PTZ00094 180 AFRPKLIIAG--ASAYPRDI---DYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP--YA---DVVTTTTHKSLRG 249 (452)
T ss_pred HhCCCEEEEe--CCCCCCcc---CHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC--CC---cEEEcCCccCCCC
Confidence 4 55555543 33488874 5777788899999999999999874432211 11111 22 2889999998644
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhh--hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFL--NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
|. .|++++++. .. +.+...+.... .+.++++....+++.++++.......++..+++.++.+++.+.|++.
T Consensus 250 P~--Gg~l~~~~~--~~--~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~- 322 (452)
T PTZ00094 250 PR--SGLIFYRKK--VK--PDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR- 322 (452)
T ss_pred CC--ceEEEEecc--cc--hHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-
Confidence 33 477777531 11 11222221111 12235666677777777776434556778889999999999999886
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe-cCCCCCC----CCeEEEEec--cC----hHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL-PGITVGL----KDWLRITFA--VE----PSALED 406 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-~g~~~~~----~~~iRis~~--~~----~~~l~~ 406 (422)
++.+...........+.+... + .+..++ ..+++++||.+. ++..+.. ++++|++++ ++ ++|+++
T Consensus 323 g~~v~~~~~~~~~~~v~~~~~---~-~~~~~~-~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~ 397 (452)
T PTZ00094 323 GYDLVTGGTDNHLVLVDLRPF---G-ITGSKM-EKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKF 397 (452)
T ss_pred CcEEecCCCCCceEeecCCcC---C-CCHHHH-HHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHH
Confidence 665332111122334444321 1 134444 444577899994 4444332 578999996 44 899999
Q ss_pred HHHHHHHHHHHh
Q 014603 407 GLGRMKAFYDRH 418 (422)
Q Consensus 407 ~~~~l~~~~~~~ 418 (422)
+++.|.+++..+
T Consensus 398 l~~~l~~~~~~~ 409 (452)
T PTZ00094 398 VADFLDRAVKLA 409 (452)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=175.05 Aligned_cols=341 Identities=16% Similarity=0.139 Sum_probs=215.5
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|.+.+++.+++.+....... ....+.+..+++.|.+..+ ...+.++++++|++
T Consensus 40 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~~~~~~~~~--~~~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsE 114 (428)
T PRK07986 40 ADGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQIDAMSHVMFG--GITHPPAIELCRKLVAMTP--QPLECVFLADSGSV 114 (428)
T ss_pred CCCCEEEEcchhHHhhcCC-CCCHHHHHHHHHHHhhcCCcccc--ccCCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHH
Confidence 3689999999886443222 45789999999998763221111 1122444556666654332 23468999999999
Q ss_pred HHHHHHHHhcC-------CCCEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCCCCc-----ccCHHH
Q 014603 122 AIEVILTVLAR-------PGANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPAKGW-----EVDLDA 175 (422)
Q Consensus 122 a~~~~~~~l~~-------~gd~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~-----~~d~~~ 175 (422)
|++.+++.... ...+|+....+||+....+... +. .+..++.. ...+ .-|++.
T Consensus 115 Ave~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~d~~~ 193 (428)
T PRK07986 115 AVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAP-QSRFDGEWDERDIAP 193 (428)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCC-CcccchhhHHHHHHH
Confidence 99999886431 2368999999999865433322 11 01112111 0000 114556
Q ss_pred HHHhhcC--CceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEE
Q 014603 176 VEALADE--NTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250 (422)
Q Consensus 176 l~~~~~~--~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i 250 (422)
+++.+.. +..+.++..| +...|. .++++.+++|.++|++||+++|+||++.++..+|... ....++..++++
T Consensus 194 l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~f-a~~~~gv~PDi~-- 270 (428)
T PRK07986 194 FARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF-ACEHAGIAPDIL-- 270 (428)
T ss_pred HHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCee-eecccCCCCCEE--
Confidence 6766642 3455666666 445565 4567899999999999999999999998876666542 222333333333
Q ss_pred ecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014603 251 GSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323 (422)
Q Consensus 251 ~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 323 (422)
+++|.+ ..| +++|.++++ +++.+.+... ...+.+.++++.+++.+.|+...+. +..++++
T Consensus 271 -t~gK~l-~gG~~p~~av~~~--------~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~---~~~~~~~ 337 (428)
T PRK07986 271 -CLGKAL-TGGTMTLSATLTT--------REVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESG---DWQQQVA 337 (428)
T ss_pred -Eechhh-hCCcccCcchhch--------HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence 468996 467 588888875 4677777542 2234567889999999888864322 2345555
Q ss_pred HHHHHHHHHhhcC---CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--
Q 014603 324 ETADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-- 398 (422)
Q Consensus 324 ~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-- 398 (422)
++.+++.+.|+++ +.+. . ...-|.+..+.+... .....+...+ .++|+.+.+. .+.+|+.++
T Consensus 338 ~~g~~l~~~l~~l~~~~~i~-~-vRg~Gl~~~ve~~~~-----~~~~~~~~~l-~~~Gl~~~~~-----g~~i~~~Ppl~ 404 (428)
T PRK07986 338 AIEAQLREELAPLRDAPMVA-D-VRVLGAIGVVETTRP-----VNMAALQRFF-VEQGVWIRPF-----GKLIYLMPPYI 404 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEE-e-EeccceEEEEEeCCc-----ccHHHHHHHH-HHCCcEEEec-----CCEEEEeCCCC
Confidence 5556666666553 3222 1 123366666666432 1234454544 6679999874 258999877
Q ss_pred cChHHHHHHHHHHHHHHHH
Q 014603 399 VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~ 417 (422)
.+++++++++++|.+++++
T Consensus 405 it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 405 ILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 7999999999999999865
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-20 Score=174.88 Aligned_cols=345 Identities=14% Similarity=0.107 Sum_probs=214.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|++.+++.+++.+...... .....+.+..+++.+.... +...+.++|+++|++
T Consensus 41 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~--~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGse 115 (429)
T PRK06173 41 KDGRRLIDGMSSWWAALHG-YNHPRLNAAATNQLAKMSHIMF--GGFTHEPAVELAQKLLEIL--PPSLNKIFFADSGSV 115 (429)
T ss_pred CCCCEEEEccchHHhccCC-CCCHHHHHHHHHHHHhcCCccc--cccCCHHHHHHHHHHHhhC--CCCcCEEEEeCCchH
Confidence 4789999998875443222 4579999999999876321111 0111233344454444322 223468999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCCCCc-----ccCHH
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPAKGW-----EVDLD 174 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~-----~~d~~ 174 (422)
|++.+++.... +| .+|+....+||+....+... +. .+..+|.. ...+ .-+++
T Consensus 116 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~l~ 194 (429)
T PRK06173 116 AVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQP-SIKFGEEWNDEAIE 194 (429)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCC-CcccchhHHHHHHH
Confidence 99999876431 23 57999999999853322211 10 01112211 0000 01355
Q ss_pred HHHHhhc--CCceEEEEeCC--CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 175 AVEALAD--ENTVALVIINP--GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 175 ~l~~~~~--~~~~~i~i~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
.+++.+. .+..+.++..| +...|.. +|++.++++.++|++||+++|+||++.++..+|... ....++..+++++
T Consensus 195 ~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PDiv~ 273 (429)
T PRK06173 195 PLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLF-ALEHAGVVPDIMC 273 (429)
T ss_pred HHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcch-HHHhcCCCCCEEE
Confidence 5666664 24466677777 5666765 788899999999999999999999998876666542 1222333333333
Q ss_pred EecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF------LNISSDPATFIQGAVPQILEKTEEEFFSKITDIL 322 (422)
Q Consensus 250 i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 322 (422)
++|.+ ..| ++++.++++ +++.+.+... ...+...+++.++++.+.|+...+. ...+++
T Consensus 274 ---~gK~l-~gG~~p~~a~~~~--------~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~---~~~~~~ 338 (429)
T PRK06173 274 ---IGKAL-TGGYLTLSATITT--------EAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLES---PWQQNI 338 (429)
T ss_pred ---eehhh-hCCccccceEEec--------HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHH
Confidence 68996 467 578888875 4677766421 1223457889999999888764322 235556
Q ss_pred HHHHHHHHHHhhcCCCCCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--c
Q 014603 323 RETADICCDRLKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--V 399 (422)
Q Consensus 323 ~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~ 399 (422)
+++.+++.+.|+++.+...+ .....|.+..+.+... .....+...+ .++||++.+.. +.+|+.++ .
T Consensus 339 ~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~-----~~~~~i~~~l-~e~Gi~v~~~g-----~~l~~~Ppl~i 407 (429)
T PRK06173 339 QRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEP-----VNMATLQPRF-VEHGIWVRPFG-----KLVYIMPPFII 407 (429)
T ss_pred HHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCc-----ccHHHHHHHH-HHCCeEEEecC-----CEEEEeCCccC
Confidence 66666666666643122211 0123466766767532 1234555554 66799998742 58999998 7
Q ss_pred ChHHHHHHHHHHHHHHHHhc
Q 014603 400 EPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 400 ~~~~l~~~~~~l~~~~~~~~ 419 (422)
+++++++++++|++++.+..
T Consensus 408 t~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 408 SPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999997753
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-20 Score=175.07 Aligned_cols=351 Identities=16% Similarity=0.136 Sum_probs=213.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|+|.+++.+++..... +.+ ....+.+..+++.|.+..+ ...+.++|+++|++
T Consensus 50 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~--~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsE 123 (451)
T PRK06062 50 YEGRRYLDFSSQLVNTNIG-HQHPKVVAAIQEQAARLCT--VAP-AHANDARSEAARLIAERAP--GDLSKVFFTNGGAD 123 (451)
T ss_pred CCCCEEEEcccCHHhhcCC-CCCHHHHHHHHHHHHhcCC--cCC-ccCCHHHHHHHHHHHHhCC--CCCCEEEEcCChHH
Confidence 4689999999886543222 4578999999999876322 111 1123444555555544322 23468999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC-----------eEEEeeccCCC--Ccc--cC-------HHHH
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL-----------EVRHFDLLPAK--GWE--VD-------LDAV 176 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~-----------~~~~~~~~~~~--~~~--~d-------~~~l 176 (422)
|++.+++... ....+|+....+||++...+... +. .+..++..... .+. -| ++.+
T Consensus 124 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l 203 (451)
T PRK06062 124 ANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHL 203 (451)
T ss_pred HHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHH
Confidence 9999988643 12368999999999885544422 11 11111111000 010 01 4566
Q ss_pred HHhhcC---CceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 177 EALADE---NTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 177 ~~~~~~---~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
++.++. +..+.++..| +...|.+ +|.+.++++.++|++||+++|+||++.++..+|... ....++..++++
T Consensus 204 e~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~-a~~~~gv~PDi~--- 279 (451)
T PRK06062 204 ERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWF-AIEHFGVVPDLI--- 279 (451)
T ss_pred HHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHH-HHHhcCCCCCee---
Confidence 776642 4456677777 4455665 678889999999999999999999999877666432 122233333333
Q ss_pred cCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh---hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHH--HH
Q 014603 252 SISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF---LNISSDPATFIQGAVPQILEKTEEEFFSKITDILR--ET 325 (422)
Q Consensus 252 s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~--~~ 325 (422)
+++|.+ ..| +++|.++++ +++++.+... ...+.+.++++++++.+.|+...++.+.+..++.. ..
T Consensus 280 t~gK~l-ggG~~Pigav~~~--------~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l 350 (451)
T PRK06062 280 TFAKGV-NSGYVPLGGVAIS--------EAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVL 350 (451)
T ss_pred eechhh-hcCCcCcEEEEEc--------HHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 468995 457 489999986 4677776432 22345778899999999998644332222222221 23
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc--ccCC-C------CHHHHHHHHHHhcCeEEecCCCCCCCCeEEEE
Q 014603 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--LEGI-N------SDMEFALKLAKEESVIVLPGITVGLKDWLRIT 396 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~-~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis 396 (422)
++.|.+..++.|.+. . ...-|.++.+.+.... .... . ....+... +.++||++.+. .+.+|++
T Consensus 351 ~~~L~~l~~~~~~v~-~-vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gvl~~~~-----~~~lrl~ 422 (451)
T PRK06062 351 GPGLRELAERHPSVG-E-VRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAA-CKERGLLPFVN-----GNRIHVV 422 (451)
T ss_pred HHHHHHHHhcCCcEE-e-EeccccEEEEEEcccccccCCCcccchhhHHHHHHHHH-HHHCCcEEeec-----CCEEEEE
Confidence 333333333343222 1 2233666666663210 0000 0 02234444 45679998652 3679998
Q ss_pred ec--cChHHHHHHHHHHHHHHHHhc
Q 014603 397 FA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 397 ~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
++ +++++|++++++++++++++.
T Consensus 423 ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 423 PPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHhh
Confidence 85 799999999999999998754
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-20 Score=174.60 Aligned_cols=341 Identities=13% Similarity=0.084 Sum_probs=207.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|...... -..+|.+.+++.+++.......+ + .+.+..+++.+.+.. ..+.+.|+++|++|
T Consensus 73 DG~~yiD~~~g~g~~~l-Gh~~p~i~~Av~~q~~~~~~~~~-~----~~~~~~lAe~l~~~~----~~~~v~F~nSGtEA 142 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMF-GHSPAPVARALAEQARRGLTTML-P----SEDAAWVGEELARRF----GLPYWQVATTATDA 142 (453)
T ss_pred CCCEEEEeccccccccc-CCCCHHHHHHHHHHHHhCCCCCC-C----CHHHHHHHHHHHHHh----CCCEEEEECCHHHH
Confidence 68889999877644322 24678999999999987433222 2 244444555554432 25789999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhh--CCCeEE----E--ee--ccC---CCCcccCHHHHHHhhcCCceEE
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATH--SHLEVR----H--FD--LLP---AKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~--~g~~~~----~--~~--~~~---~~~~~~d~~~l~~~~~~~~~~i 187 (422)
.+.+++... ...++|+....+||++...... ...... . ++ ... .-.| -|++.+++.+..+..+.
T Consensus 143 ~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~vAa 221 (453)
T PRK07046 143 NRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALADGDVAA 221 (453)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCCCCeEE
Confidence 999988642 2237899999999997432221 010000 0 00 000 0011 17888988886555677
Q ss_pred EEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccc--cCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 188 VIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLA--FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 188 ~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
+|..| +...|. .++++.++++.++|++||+++|+||++. +. ++|. . ..++..++++ +++|.+ ..|++
T Consensus 222 vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~--~--~~~gv~PDi~---t~gK~l-ggG~P 292 (453)
T PRK07046 222 VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGY--T--RAHGLEPDFL---VVGKPI-AGGVP 292 (453)
T ss_pred EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcch--h--HHhCCCccce---eehhhh-cCCCc
Confidence 77888 434454 4566789999999999999999999997 32 2221 1 1223223333 468995 56899
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhh----------hhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHH
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSF----------LNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDR 332 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~ 332 (422)
+|.++++ +++++.+... ...+.+.++++++++.+.|+... ++.+++..+.-...++.+.+.
T Consensus 293 i~av~g~--------~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l 364 (453)
T PRK07046 293 CAVYGFS--------AELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAV 364 (453)
T ss_pred ceeeeeh--------HHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999885 4677777531 12245678899999999888643 233444444444444444444
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCC------CC---HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGI------NS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSA 403 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~---~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~ 403 (422)
+++. ++... ...-|..+.+.+........ .+ ...+...+ .++||.+.|. .+.+++++.+++++
T Consensus 365 ~~~~-~~~~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~-----~~~~~~~p~~t~~d 436 (453)
T PRK07046 365 IARH-GLPWH-VTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYL-LNRGVLITPF-----HNMMLVCPATTAAD 436 (453)
T ss_pred HHhC-CCCeE-EEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHH-HHCCCEEecc-----cCcEEEeCCCCHHH
Confidence 4444 22211 11223333344321100000 01 12233333 4579999873 24678998899999
Q ss_pred HHHHHHHHHHHHHHhc
Q 014603 404 LEDGLGRMKAFYDRHA 419 (422)
Q Consensus 404 l~~~~~~l~~~~~~~~ 419 (422)
|+++++++.++++++.
T Consensus 437 id~~~~~~~~~l~~~~ 452 (453)
T PRK07046 437 VDRLVAAFDACLGELL 452 (453)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998753
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-20 Score=174.66 Aligned_cols=341 Identities=15% Similarity=0.110 Sum_probs=211.0
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|++.+++.+++.+.....+.. ...+.+..+++.+.+..+ ...+.++++++|++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~~~~~~~~~~--~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGse 111 (422)
T PRK05630 37 EDGSTVIDAMSSWWSAAHG-HGHPRLKAAAHKQIDTMSHVMFGG--LTHEPAIKLTRKLLNLTD--NGLDHVFYSDSGSV 111 (422)
T ss_pred CCCCEEEEcchhHHHhcCC-CCCHHHHHHHHHHHHhCCCcccCC--cCCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHH
Confidence 4789999998886553222 457899999999998632211111 112334445555544222 22468999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhC-CC-------------eEEEeeccCCCCccc-C----HH
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHS-HL-------------EVRHFDLLPAKGWEV-D----LD 174 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~-g~-------------~~~~~~~~~~~~~~~-d----~~ 174 (422)
|++.+++.... ++ .+|+....+||+....+... +. ....+|..+...... + .+
T Consensus 112 A~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 191 (422)
T PRK05630 112 SVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLR 191 (422)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHH
Confidence 99999876431 23 57999999999865443322 10 112222211000000 1 23
Q ss_pred HHHHhhcCCceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 175 AVEALADENTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
.+++.+.+ ..+.+|..| +...|. .++.+.++++.++|++||+++|+||++.++..+|... .....+..++++
T Consensus 192 ~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PDi~--- 266 (422)
T PRK05630 192 SLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF-ATLAAGVTPDIM--- 266 (422)
T ss_pred HHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh-HHHhcCCCCCee---
Confidence 34444543 455566666 566676 4677889999999999999999999998877666432 222233333333
Q ss_pred cCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh-------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014603 252 SISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF-------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323 (422)
Q Consensus 252 s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 323 (422)
+++|.+ ..| .++|+++++ +++.+.+... ...+...+++.++++.++|+...+. ...++++
T Consensus 267 t~gK~l-~gG~~p~~av~~~--------~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~---~~~~~~~ 334 (422)
T PRK05630 267 CVGKAL-TGGFMSFAATLCT--------DKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETG---MWRKQVK 334 (422)
T ss_pred eeechh-hcCccccceeecc--------HHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhC---cHHHHHH
Confidence 568985 456 578999886 4677766421 1234577889999998888864422 2233455
Q ss_pred HHHHHHHHHhhc---CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--
Q 014603 324 ETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-- 398 (422)
Q Consensus 324 ~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-- 398 (422)
++.+++++.|++ .|.+. . ...-|.+..+.+... .+...+... +.++|+++.+. .+.+|+.++
T Consensus 335 ~~g~~l~~~L~~l~~~~~v~-~-vRg~Gl~~~ie~~~~-----~~~~~~~~~-~~~~Gl~~~~~-----g~~l~~~PpL~ 401 (422)
T PRK05630 335 RIEAELIAGLSPLAHLPGVA-D-VRVLGAIGVVEMEQP-----VDMEEATQA-AVDHGVWLRPF-----GRLVYVMPPYI 401 (422)
T ss_pred HHHHHHHHHHHHhhcCCCee-e-eeccccEEEEEECCc-----ccHHHHHHH-HHHCCeEEEec-----CCEEEEECCcc
Confidence 555555555543 33322 1 123367777777432 123444444 56679999763 268999987
Q ss_pred cChHHHHHHHHHHHHHHHH
Q 014603 399 VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~ 417 (422)
.+++++++++++|++++++
T Consensus 402 it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 402 TTSEQIAQICAALAAAVKA 420 (422)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 7899999999999999864
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=171.82 Aligned_cols=227 Identities=17% Similarity=0.112 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~ 163 (422)
....+++.++++++ .+..++++++++|+.+++.+++++||+|+++...|.+.. ..+...|++++.++
T Consensus 70 t~~~le~~la~l~g--------~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 70 TVEALENRIASLEG--------GVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred HHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 35678888888872 245566666668998888888899999999999998763 34466788888876
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
++ .|++.+++.++++++++++.++.||+|.+ .++++|.++|+++|+++|+|.+++... ...++ .++.
T Consensus 141 ~~-----~d~e~l~~~l~~~tk~V~~e~~~Np~~~v---~di~~I~~la~~~gi~livD~t~a~g~----~~~p~-~~Ga 207 (437)
T PRK05613 141 NP-----DDPESWQAAVQPNTKAFFGETFANPQADV---LDIPAVAEVAHRNQVPLIVDNTIATAA----LVRPL-ELGA 207 (437)
T ss_pred CC-----CCHHHHHHhCCccCeEEEEECCCCCCCcc---cCHHHHHHHHHHcCCeEEEECCCcccc----ccChH-HhCC
Confidence 22 27899999999999999989999999988 468888999999999999999986522 11122 3344
Q ss_pred CCCeEEEecCccccCCCCceeEEEEeeCCCCcc----------------------------cchhHHHHHH--hhhhhcc
Q 014603 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL----------------------------QDSGIVDSIK--SFLNISS 293 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~----------------------------~~~~~~~~~~--~~~~~~~ 293 (422)
| +++.|++|.+++.|.-+|.+++.++...+ ....+..+.. .......
T Consensus 208 D---ivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 284 (437)
T PRK05613 208 D---VVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGA 284 (437)
T ss_pred C---EEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCC
Confidence 3 89999999988777666665553211000 0000111111 1112334
Q ss_pred CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014603 294 DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344 (422)
Q Consensus 294 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 344 (422)
..++...+.+..-|+. +.-+.++..++...+.+.|+++|.+..+.+
T Consensus 285 ~~~p~~a~l~~rgl~T-----L~lR~~~~~~nA~~lA~~L~~hp~V~~V~y 330 (437)
T PRK05613 285 TLSPFNAWVTAQGLDT-----LSLRLERHNENAIKVAEFLNNHEKVAKVNF 330 (437)
T ss_pred CCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence 6677777776666665 677778888999999999999887643333
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=174.63 Aligned_cols=350 Identities=17% Similarity=0.149 Sum_probs=215.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC-CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF-NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.+|||..|......+ ..+|++.+++.+++.+... .... ....+.+..+++.|.+..+ .+.+.++|+++|+
T Consensus 45 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGs 119 (460)
T PRK06105 45 DAGKRYIEGMAGLWSVALG-FSEQRLVEAAARQMKKLPFYHTFS--HKSHGPVIDLAEKLVAMAP--VPMSKVFFTNSGS 119 (460)
T ss_pred CCCCEEEEcchhHHhccCC-CCCHHHHHHHHHHHHhCCCeeccc--ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcH
Confidence 3689999999886553333 4578999999999976321 1111 1122344445555544332 2346899999999
Q ss_pred HHHHHHHHHhc------C-C-CCEEEecCCCccchHHHHhhC-CCe------------EEEeeccCCCCc----------
Q 014603 121 QAIEVILTVLA------R-P-GANILLPRPGFPYYEARATHS-HLE------------VRHFDLLPAKGW---------- 169 (422)
Q Consensus 121 ~a~~~~~~~l~------~-~-gd~Vl~~~~~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~---------- 169 (422)
+|++++++... . + ..+|+....+||+....+... +.. +..++......+
T Consensus 120 eAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 199 (460)
T PRK06105 120 EANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHH
Confidence 99999998742 1 2 257999999998875443221 111 111111000000
Q ss_pred -ccCHHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 170 -EVDLDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 170 -~~d~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
....+++++.+. .+..+.+|..| +...|.. +|++.++++.++|++||+++|+||++.++..+|... ....++.
T Consensus 200 ~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f-~~~~~~v 278 (460)
T PRK06105 200 ATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMF-GCETFGI 278 (460)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhh-hHHhcCC
Confidence 001345666552 24556677777 5555664 688899999999999999999999999887777543 2333333
Q ss_pred CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHHH
Q 014603 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEFF 315 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 315 (422)
.++++ +++|.++...+++|.++++ +++.+.+... ...+.+.++++.+++.+.|+...++
T Consensus 279 ~PDi~---~~gK~lggG~~P~~av~~~--------~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~-- 345 (460)
T PRK06105 279 KPDIL---VMSKQLSSSYQPLSAVLMN--------EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER-- 345 (460)
T ss_pred CCCee---eeecccccCcccceEEEEc--------HHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 33333 4579965433689999986 4677766532 2234577889999998888865422
Q ss_pred HHHHHHHHHHHHHHHHHhhc---CCCCCCCCCCCCceEEEEecCcccc--cCCCC----HHHHHHHHHHhcCeEEecCCC
Q 014603 316 SKITDILRETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSLL--EGINS----DMEFALKLAKEESVIVLPGIT 386 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~gi~v~~g~~ 386 (422)
+..++++++.+++++.|++ +|.+. . ...-|.+..+.+..... ..... ...+... +.++||.+.+.
T Consensus 346 -~l~~~v~~~g~~l~~~L~~l~~~~~v~-~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~-~~~~Gvl~~~~-- 419 (460)
T PRK06105 346 -DLVGNAAERGARLQARLRALADHPLVG-E-VRGVGLIAAVELVADKATKTPFEPPGKVGARANAA-AHEHGVISRAM-- 419 (460)
T ss_pred -cHHHHHHHHHHHHHHHHHHhhcCCCeE-E-EEecceEEEEEEecCcccCCCCCchhHHHHHHHHH-HHHCCeEEEec--
Confidence 2344455555555555544 33222 1 22336666666632110 00001 1234444 46779999874
Q ss_pred CCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 387 VGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 387 ~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.+|+++. .++++++++++++.++++++.
T Consensus 420 ---g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 420 ---GDTLAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred ---CCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 258999987 689999999999999998764
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=156.50 Aligned_cols=326 Identities=16% Similarity=0.191 Sum_probs=213.0
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
...+||-+...+ -+..+++++|.++...+.. |+......+|++.+|++++ .+.-+|+++||.++.
T Consensus 21 ~~~vDLRSDTvT-----~PTdeMr~am~eA~vgDdV--yGeD~tt~rLE~~vA~l~G--------KEAgLFv~SGTmgNl 85 (384)
T KOG1368|consen 21 HRSVDLRSDTVT-----VPTDEMRRAMAEASVGDDV--YGEDPTTNRLEQRVAELFG--------KEAGLFVPSGTMGNL 85 (384)
T ss_pred eecccccccccc-----CChHHHHHHHhhcccCccc--ccCCccHHHHHHHHHHHhC--------ccceeeecccccccH
Confidence 445677665544 3457899999998776554 6665567899999999984 344455555555555
Q ss_pred HHHHH-hcCCCCEEEecCCCc-cchHH--HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC--------CceEEEEeCC
Q 014603 125 VILTV-LARPGANILLPRPGF-PYYEA--RATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--------NTVALVIINP 192 (422)
Q Consensus 125 ~~~~~-l~~~gd~Vl~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--------~~~~i~i~~p 192 (422)
++++. +-++|.+|++.+.+| +.|.. ++.+.|+.++ ++.++++..+++++++..+.. -++++.+.|-
T Consensus 86 laIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~--tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT 163 (384)
T KOG1368|consen 86 LAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVR--TVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENT 163 (384)
T ss_pred HHHHHHhcCCCceEEeccchheeehhccChhhhccceeE--eeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeecc
Confidence 55554 556999999999888 33433 3334454444 445667778999999998752 3688889998
Q ss_pred CCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
+|.+| .++|.+++.++.++|+++|+.++.|.+--+-.-... -.++..+...-+.+.+ .+||.+|.| +|.++..+
T Consensus 164 ~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavas-gV~vk~i~~~fDSVsi-CLSKglgAP---VGSViVG~ 238 (384)
T KOG1368|consen 164 HNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVAS-GVPVKKICSAFDSVSI-CLSKGLGAP---VGSVIVGS 238 (384)
T ss_pred ccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHc-CCCHHHHHHhhhhhhh-hhhccCCCC---cccEEEcc
Confidence 76555 999999999999999999999999998643111111 1123332211111222 578997555 68777653
Q ss_pred CCCcccchhHHHHHHhhhhhcc---CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CC
Q 014603 272 PNGILQDSGIVDSIKSFLNISS---DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP-EG 347 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~ 347 (422)
.+++++.+..+-..+ ..+.+..+|+..+|++. +. ..+.-.++...+.+.+...+++. +..| ..
T Consensus 239 -------k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~----~~-~L~~dHk~A~~lAe~~~~~~~i~-v~v~a~e 305 (384)
T KOG1368|consen 239 -------KDFIDKARHFRKALGGGMRQSGVLAAAALVALDEN----VP-LLRADHKRAKELAEYINTPEEIR-VEVPAVE 305 (384)
T ss_pred -------HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcc----hH-HHHHHHHHHHHHHHHhcccccee-eecchhh
Confidence 567777766553222 23445556666666542 22 33334455666666777666566 3344 44
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
.++..+.+.... .+..++...+ +++||.+.+|.. ..+||.+. .++++++..+..+.+.
T Consensus 306 tNiv~~~l~q~~----~~~~~l~~~~-~k~gi~lm~~~s----~r~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 306 TNIVNMVLCQAR----LTAEELCKFL-EKNGILLMGGAS----RRIRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred cceeeeeccccc----CCHHHHHHHH-HHCCeEEeeccc----cceEEEEEEecCHHHHHHHHHHHHHH
Confidence 566666554322 2566776665 788999998764 34899997 7899999999999543
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=173.47 Aligned_cols=348 Identities=13% Similarity=0.108 Sum_probs=210.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..+. ....+ ..+|.|.+++.+++.... +.......+.+..+++.|.+..+ ...+.++|++||++|
T Consensus 70 dG~~ylD~~g~~-~~~lG-h~~p~v~~Ai~~ql~~~~---~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseA 142 (459)
T PRK06082 70 DGKKYMDFHGNN-VHQLG-YGHPHVIEKVKEQMAKLP---FSPRRFTNETAIECAEKLTEIAG--GELNRVLFAPGGTSA 142 (459)
T ss_pred CCCEEEEcccHh-hcccC-CCCHHHHHHHHHHHHhCC---CccCccCCHHHHHHHHHHHHhCC--CCCCEEEECCCcHHH
Confidence 578899987432 21122 368999999999987532 11111123444455555544332 224689999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhh-CCCe------------EEEeeccCCC--Ccc-c------CHHHHHH
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATH-SHLE------------VRHFDLLPAK--GWE-V------DLDAVEA 178 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~-~g~~------------~~~~~~~~~~--~~~-~------d~~~l~~ 178 (422)
++.+++... ....+|+....+||+....+.. .+.. +..++..... .+. . .++.+++
T Consensus 143 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (459)
T PRK06082 143 IGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEY 222 (459)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHH
Confidence 999987653 2237899999999887543332 2211 1112110000 010 0 1244666
Q ss_pred hhcC-CceEEEEeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 179 LADE-NTVALVIINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 179 ~~~~-~~~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
.+.. +..+.+|..| ++..+..+|.+.++++.++|++||+++|+||++.++..+|... ....++..+++++ ++|.
T Consensus 223 ~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~f-a~e~~gv~PDiv~---~gKg 298 (459)
T PRK06082 223 VIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWF-THQAYGIEPDILC---IGKG 298 (459)
T ss_pred HHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HhHhhCCCCCEEE---eccc
Confidence 6642 3456677777 4444456788899999999999999999999999887777532 2223333334443 6899
Q ss_pred cCCCC-ceeEEEEeeCCCCcccchhHHHHHHh-hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 257 WIVPG-WRLGWLVTSDPNGILQDSGIVDSIKS-FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 257 ~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
++ .| +++|.+++++ ++...... ....+.+.++++.+++.+.|+...++ +..++++++-+++.+.|+
T Consensus 299 l~-gG~~P~~av~~~~--------~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~ 366 (459)
T PRK06082 299 LG-GGLVPIAAMITKD--------KYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLL 366 (459)
T ss_pred cc-CCCCcceEEEEcH--------HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH
Confidence 65 56 6999998863 44433221 11235577889999998888864322 244455555555555554
Q ss_pred c----CCCCCCCCCCCCceEEEEecCcccc-cCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHH
Q 014603 335 E----IPCITCPKKPEGSMFVMVKLNYSLL-EGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALE 405 (422)
Q Consensus 335 ~----~~~~~~~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~ 405 (422)
+ +|.+. . ...-|.++.+.+..... ... .....+... +.++|+.+.+.. .+.+|+++. +++++|+
T Consensus 367 ~l~~~~~~i~-~-vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~~----~~~i~~~Ppl~it~~eid 439 (459)
T PRK06082 367 EMKAKYPLIG-D-VRGIGLLWGVELVTDRHTKERAYDEAEAVLYR-CLNNGLSFKVSQ----GNVIQLSPPLIITREELT 439 (459)
T ss_pred HHHhhCCCee-e-eeeccceeEEEEccCccccCccHHHHHHHHHH-HHhCCCEEEecC----CCEEEEeCCCccCHHHHH
Confidence 4 33222 1 23346677777742110 000 002234443 456799997742 478999986 6899999
Q ss_pred HHHHHHHHHHHHhcc
Q 014603 406 DGLGRMKAFYDRHAK 420 (422)
Q Consensus 406 ~~~~~l~~~~~~~~~ 420 (422)
++++++++++.++.+
T Consensus 440 ~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 440 QALAILEEAIAKICQ 454 (459)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987644
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-19 Score=172.26 Aligned_cols=351 Identities=16% Similarity=0.140 Sum_probs=214.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|++.+++.+++.+... +.......+.+..+++.|.+..+ ...+.++|+++|++
T Consensus 46 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~ql~~l~~--~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGse 120 (445)
T PRK09221 46 ADGRKILDGTAGLWCCNAG-HGRPEIVEAVARQAATLDY--APAFQMGHPLAFELAERLAELAP--GGLDHVFFTNSGSE 120 (445)
T ss_pred CCCCEEEEccccHhhccCC-CCCHHHHHHHHHHHHhccC--ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHH
Confidence 4689999998886553222 4678999999999876211 11111112333445555544322 22468999999999
Q ss_pred HHHHHHHHhc------C-C-CCEEEecCCCccchHHHHhhCCC-------------eEEEeeccC---CCCccc------
Q 014603 122 AIEVILTVLA------R-P-GANILLPRPGFPYYEARATHSHL-------------EVRHFDLLP---AKGWEV------ 171 (422)
Q Consensus 122 a~~~~~~~l~------~-~-gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~---~~~~~~------ 171 (422)
|++.+++... . + ..+|+....+||+....+..... .+..++... ...+..
T Consensus 121 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (445)
T PRK09221 121 SVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHG 200 (445)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHH
Confidence 9999987543 1 1 25899999999987543322110 112222110 000000
Q ss_pred --CHHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 172 --DLDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 172 --d~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
..+.+++.+. .+..+.++..| +...|.. +|.+.++++.++|+++|+++|+||++.++..+|... ....++..
T Consensus 201 ~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-~~~~~gv~ 279 (445)
T PRK09221 201 AELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAF-AAERFGVT 279 (445)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhh-HHHhcCCC
Confidence 1245666554 24455666777 5566764 577889999999999999999999998877766532 22233333
Q ss_pred CCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
+++ .+++|.++...+++|.++++ +++++.+... ...+.+.++++.+++.+.|+...++
T Consensus 280 PDi---~~~gK~l~gG~~Pi~av~~~--------~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~--- 345 (445)
T PRK09221 280 PDI---ITFAKGLTNGAIPMGAVIAS--------DEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE--- 345 (445)
T ss_pred CCE---EEeccccccCcccceeeEEc--------HHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc---
Confidence 333 35689964333788998885 4666665421 1234567888888888888764322
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEE
Q 014603 317 KITDILRETADICCDRLKEIPCITCPK-KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI 395 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi 395 (422)
...++++++.+++++.|+++.....+. ...-|.+..+.+............++...+ .++||++.++ .+.+|+
T Consensus 346 ~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~-~~~Gv~~~~~-----~~~lr~ 419 (445)
T PRK09221 346 DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKC-FEKGLLVRYT-----GDTIAL 419 (445)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHH-HHCCeEEeec-----CCEEEE
Confidence 345666777777777776652211111 122355555555421110011133455544 5679999764 367999
Q ss_pred Eec--cChHHHHHHHHHHHHHHHHh
Q 014603 396 TFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 396 s~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+++ .++++|++++++|++++.++
T Consensus 420 ~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 420 SPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHhh
Confidence 977 78999999999999999764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=173.12 Aligned_cols=358 Identities=17% Similarity=0.169 Sum_probs=214.9
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++++..... ......+....+++.|....+ ...+.++++++|++
T Consensus 27 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~av~~ql~~~~~~~--~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsE 101 (443)
T PRK07483 27 ATGKRYLDASGGAAVSCLG-HSHPRVIAAIHAQIDRLAYAH--TSFFTTEPAEALADRLVAAAP--AGLEHVYFVSGGSE 101 (443)
T ss_pred CCCCEEEEcCccHhhhccC-CCCHHHHHHHHHHHHhccCcc--ccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCCcHH
Confidence 3689999999886553222 457899999999998632111 111112444455555544322 23468999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhCC-C------------eEEEeeccCCCCc---cc------
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHSH-L------------EVRHFDLLPAKGW---EV------ 171 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~g-~------------~~~~~~~~~~~~~---~~------ 171 (422)
|++.+++.... ++ .+|+....+||+....+.... . .+..++.....+. ..
T Consensus 102 Ave~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (443)
T PRK07483 102 AVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYG 181 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHH
Confidence 99999875431 23 579999999998754333221 1 1111211100000 00
Q ss_pred --CHHHHHHhhc---CCceEEEEeCCCC--Cccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 172 --DLDAVEALAD---ENTVALVIINPGN--PCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 172 --d~~~l~~~~~---~~~~~i~i~~p~n--ptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.++.+++.+. .+..+.++..|-. ..|. .+|++.++++.++|++||+++|.||++.++.++|... ....++.
T Consensus 182 ~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv 260 (443)
T PRK07483 182 QRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLF-ACEEDGV 260 (443)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHH-HHhhcCC
Confidence 0245565443 2455667777743 2354 5678889999999999999999999999987777532 2223333
Q ss_pred CCCeEEEecCccccCCCCc-eeEEEEeeCCCCcccchhHHHHHHhh-----hhhccCcchHHHHHHHHHHhhchH-HHHH
Q 014603 244 IVPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDSGIVDSIKSF-----LNISSDPATFIQGAVPQILEKTEE-EFFS 316 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~-~~~~ 316 (422)
.+++++ ++|.+ ..|. ++|.++++ +++.+.+... ...+.+.++++.+++.+.|+...+ ..++
T Consensus 261 ~PDiv~---~gK~l-~gG~~Pi~av~~~--------~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~ 328 (443)
T PRK07483 261 APDLVT---IAKGL-GAGYQPIGAVLAS--------DRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLA 328 (443)
T ss_pred CCCeee---ehhhh-ccCccccEEEEEc--------HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 334444 47995 6685 99999986 4677766532 223557789999999999886443 2233
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc--ccCCC----CHHHHHHHHHHhcCeEEecCCCC--C
Q 014603 317 KITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--LEGIN----SDMEFALKLAKEESVIVLPGITV--G 388 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~gi~v~~g~~~--~ 388 (422)
+..+.-...++.+.+.+++.|.+. . ...-|.++.+.+.... ..... ....+... +.++|+++.+.... +
T Consensus 329 ~~~~~g~~l~~~L~~l~~~~~~i~-~-vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gll~~~~~~~~~~ 405 (443)
T PRK07483 329 NVRARGEQLRARLRERLGQHPHVG-D-IRGRGLFVGVELVADRATKAPFDPALKLHARIKRE-AMARGLMVYPMGGTIDG 405 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCee-e-EeecccEEEEEEeecccccCCCCchhhHHHHHHHH-HHHCCcEEEecCccccC
Confidence 333323333333433334444332 1 2334666666663210 00000 01234444 45679999874321 1
Q ss_pred -CCCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 389 -LKDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 389 -~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
..+.+|+.+. .+++++++++++|++++.+...
T Consensus 406 ~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 406 VRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1478999987 7899999999999999987643
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-19 Score=170.35 Aligned_cols=351 Identities=15% Similarity=0.129 Sum_probs=212.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|++.+++.+++.+....... .....+.+..+++.|.+..+ +...+.++|+++|++
T Consensus 39 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~sGsE 115 (449)
T PRK07481 39 IDGKKLLDGVGGLWNVNVG-HNREEVKEAIVRQLDELEYYSTF-DGTTHPRAIELSYELIDMFA-PEGMRRVFFSSGGSD 115 (449)
T ss_pred CCCCEEEECchhHHhhcCC-CCCHHHHHHHHHHHHhccceecc-cccCCHHHHHHHHHHHHhcC-CCCCCEEEEcCchHH
Confidence 4789999998876543222 45789999999998763221100 01112444455555554332 113468999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhCCC-------------eEEEeeccCC--CCcc-cCHHH--
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPA--KGWE-VDLDA-- 175 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~--~~~~-~d~~~-- 175 (422)
|++.+++.... +| .+|+....+||++...+..... ++..++.... ..+. .|++.
T Consensus 116 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~ 195 (449)
T PRK07481 116 SVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELA 195 (449)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHH
Confidence 99999886431 23 5799999999987544332211 1111211100 0011 13333
Q ss_pred ------HHHhhc---CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 176 ------VEALAD---ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 176 ------l~~~~~---~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
+++.+. ++..+.++..| +...|. .++.+.++++.++|++||+++|.||++.++.++|.... ...++..
T Consensus 196 ~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a-~~~~gv~ 274 (449)
T PRK07481 196 RICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFG-SRGWGVK 274 (449)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhH-hhhcCCC
Confidence 333332 24456677777 555666 46778899999999999999999999999877765321 2233333
Q ss_pred CCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHHH
Q 014603 245 VPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEFF 315 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 315 (422)
++++++ +|.+ ..| +++|.++++ +++++.+... ...+.+.++++++++.+.|+...++
T Consensus 275 PDiv~~---gKgl-~gG~~Pi~av~~~--------~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~-- 340 (449)
T PRK07481 275 PDIMCL---AKGI-TSGYVPLGATMVN--------ARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVRE-- 340 (449)
T ss_pred CCEEEE---eecc-cCCCcCceEEEEc--------HHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhh--
Confidence 444444 7995 557 599999986 4677766531 2234567899999999998864422
Q ss_pred HHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCCceEEEEecCccc-ccCCC-----CHHHHHHHHHHhcCeEEecCC
Q 014603 316 SKITDILRETADICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSL-LEGIN-----SDMEFALKLAKEESVIVLPGI 385 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-----~~~~~~~~l~~~~gi~v~~g~ 385 (422)
+..+++++.-+++.+.|++ +|.+. . ...-|.++.+.+.... ..... ....+... +.++||++.+..
T Consensus 341 -~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~-vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~g 416 (449)
T PRK07481 341 -DLPANAAKRGAYLLEGLQPLKERFELVG-D-VRGKGLMLALDLVADKATREPIDPSKGYANAVADV-ARENGVLVRPSG 416 (449)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhhcCCCeE-E-EeecceEEEEEecccccccCCCCchhHHHHHHHHH-HHhCCeEEEecC
Confidence 2233344444444444443 33222 1 2233667667663210 00000 11233343 456799998742
Q ss_pred CCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 386 TVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 386 ~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.+|+++. .++++|+++++++.++++++.
T Consensus 417 -----~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 417 -----TKIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred -----CEEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 45899976 699999999999999998764
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-19 Score=153.45 Aligned_cols=320 Identities=15% Similarity=0.098 Sum_probs=229.3
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC---CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS---TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
..++.|++|+..... .|.. .+.+.++++-+..-++ ..++.-.++..+|+.++++++..++.|||.|+
T Consensus 27 nl~~~V~~A~~~~~l-----gh~sPe~~qIm~~v~egikyVFk-----T~n~~tf~isgsGh~g~E~al~N~lePgd~vL 96 (385)
T KOG2862|consen 27 NLSGRVQEAMSRPSL-----GHMSPEFVQIMDEVLEGIKYVFK-----TANAQTFVISGSGHSGWEAALVNLLEPGDNVL 96 (385)
T ss_pred CCCHHHHHhhcCCcc-----ccCCHHHHHHHHHHHHHHHHHhc-----cCCCceEEEecCCcchHHHHHHhhcCCCCeEE
Confidence 346777777665432 2222 1234455555555553 23445677888899999999999999999999
Q ss_pred ecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHH-HHHHHHHHHH
Q 014603 139 LPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQH-LQKIAETAKK 214 (422)
Q Consensus 139 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~-l~~i~~~~~~ 214 (422)
+...+-++ +.+.+++.|+++..++.+. +..+.++.+.+.+.+ +++++++++....||+. ++ ++.+.++|++
T Consensus 97 v~~~G~wg~ra~D~~~r~ga~V~~v~~~~--G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~---q~~~~~~g~lc~k 171 (385)
T KOG2862|consen 97 VVSTGTWGQRAADCARRYGAEVDVVEADI--GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVL---QDLLAISGELCHK 171 (385)
T ss_pred EEEechHHHHHHHHHHhhCceeeEEecCc--ccCccHHHHHHHHHhcCCceEEEEecCcccccc---chHHHHHHHHhhc
Confidence 87766544 4678889999999997654 446899999988765 57888999999999999 56 6777889999
Q ss_pred cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHHhhhh---
Q 014603 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLN--- 290 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--- 290 (422)
|++++++|.+.+. |.....+.+++.| +......|.+++ +| ++.+..++ ...++++..+.
T Consensus 172 ~~~lllVD~VaSl----ggt~F~mDewgVD---vaytgSQKaL~aP~G--LsiisfS~--------ka~~~~~~rK~~~~ 234 (385)
T KOG2862|consen 172 HEALLLVDTVASL----GGTEFEMDEWGVD---VAYTGSQKALGAPAG--LSIISFSD--------KALEAIRDRKTKPV 234 (385)
T ss_pred CCeEEEEechhhc----CCccceehhhccc---EEEecchhhcCCCCC--cceeecCH--------HHHHHHhhccCCce
Confidence 9999999999875 2222234444444 555566798865 45 44465543 34444543211
Q ss_pred ---------------------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC---CC
Q 014603 291 ---------------------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK---PE 346 (422)
Q Consensus 291 ---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~ 346 (422)
+..+++....+.+.++|....++++++.+++.++..+.++..|+++ |++.... +.
T Consensus 235 ~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~r 313 (385)
T KOG2862|consen 235 SFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELR 313 (385)
T ss_pred EEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhc
Confidence 2347777788899999988778999999999999999999999997 5442211 12
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHHHHHHHHHHHhc
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~~~~~ 419 (422)
......+..|.. .|..+++.++..++++.+..|.....+..+||.+. -+.+.++..++.|..++.+..
T Consensus 314 lptvttv~vp~g-----vDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 314 LPTVTTVKVPYG-----VDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred cCcceeeecCCC-----CCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 222333444433 37889999988888999988887777899999985 357899999999999886643
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=174.14 Aligned_cols=348 Identities=13% Similarity=0.058 Sum_probs=215.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ ..+|++.+++.+++.+..... ......+.+..+++.|.... +...+.++|+++|++
T Consensus 44 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~l~~~~--~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGsE 118 (466)
T PRK07030 44 FEGKRYLDAVSSWWVNVFG-HANPRINQRIKDQVDQLEHVI--LAGFSHEPVIELSERLVKIT--PPGLSRCFYADNGSS 118 (466)
T ss_pred CCCCEEEEcchhHHhhcCC-CCCHHHHHHHHHHHHhcCCcc--ccccCCHHHHHHHHHHHHhC--CCCcCEEEEeCCcHH
Confidence 4789999998886543223 457899999999997632111 10112234444555554422 223468999999999
Q ss_pred HHHHHHHHhc------C-C-CCEEEecCCCccchHHHHhhCCCe-------------EEEeeccCCC--Ccc--------
Q 014603 122 AIEVILTVLA------R-P-GANILLPRPGFPYYEARATHSHLE-------------VRHFDLLPAK--GWE-------- 170 (422)
Q Consensus 122 a~~~~~~~l~------~-~-gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~--~~~-------- 170 (422)
|++.+++... . + ..+|+....+||+....+...+.. +..+|..... .++
T Consensus 119 Ave~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~ 198 (466)
T PRK07030 119 AIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSR 198 (466)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHH
Confidence 9999988652 1 2 357999999999875444332111 1112211000 000
Q ss_pred cCHHHHHHhhc--CCceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 171 VDLDAVEALAD--ENTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 171 ~d~~~l~~~~~--~~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
-+++.+++.+. .+..+.+|..| +...|. .+|++.++++.++|++||+++|.||++.++.++|... ....++..+
T Consensus 199 ~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~-a~~~~gv~P 277 (466)
T PRK07030 199 RMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF-ACEQAGIRP 277 (466)
T ss_pred HHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch-HHHhcCCCC
Confidence 12445666664 24556667777 455566 5677889999999999999999999999987777532 223334444
Q ss_pred CeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHh--------hhhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 246 PVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKS--------FLNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
+++++ +|.+ ..| +++|.++++ +++++.+.. ....+.+.++++++++.+.|+...++.
T Consensus 278 Div~~---gKgl-~gG~~Pi~av~~~--------~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~-- 343 (466)
T PRK07030 278 DFLCL---SKAL-TGGYLPLAAVLTT--------DTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDN-- 343 (466)
T ss_pred CEEee---ehhc-cCCcccceEEEec--------HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcC--
Confidence 44444 6995 568 599999986 467776642 122345678999999999988654322
Q ss_pred HHHHHHHHHHHHHHHHhhc---CCCCCCCCCCCCceEEEEecCcccc--cCC-CC---HHHHHHHHHHhcCeEEecCCCC
Q 014603 317 KITDILRETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSLL--EGI-NS---DMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~~~~~~--~~~-~~---~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
..++.++.-+++++.|++ .|.+. . ...-|.++.+.+..... ... .+ ...+... +.++|+++.+.
T Consensus 344 -l~~~~~~~G~~l~~~L~~l~~~~~v~-~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~--- 416 (466)
T PRK07030 344 -VIENNRALARRMAEATAHLADHPHVA-E-VRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQH-ALERGALLRPL--- 416 (466)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCEE-E-eEeceeEEEEEeccCccccccCcchhHHHHHHHHH-HHHCCeEEEec---
Confidence 334444444444444443 33332 1 23346677776632110 000 00 1234444 45679999763
Q ss_pred CCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 388 GLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 388 ~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+.+|+.++ +++++|+++++++++++++.
T Consensus 417 --g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 417 --GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred --CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 257899876 78999999999999999876
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-19 Score=165.58 Aligned_cols=289 Identities=21% Similarity=0.240 Sum_probs=193.7
Q ss_pred CCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hC
Q 014603 81 NCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HS 154 (422)
Q Consensus 81 ~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~ 154 (422)
..|... +....++++++++- ..+.++++++|++|+..++.+++++||+|+++...|.+....++ ..
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le--------~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~ 118 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALE--------GGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRF 118 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHH--------T-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHT
T ss_pred cceeccccccHHHHHHHHHHhh--------cccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhccc
Confidence 455542 23456777777776 33678999999999999999999999999999999988765544 36
Q ss_pred CCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC-cEEEEcccccccccCCC
Q 014603 155 HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG-IMVIADEVYDHLAFGNT 233 (422)
Q Consensus 155 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~-~~li~D~~~~~~~~~~~ 233 (422)
|+++..++. -|+++|++.++++++++++..|.||+..+ .|+++|+++|+++| +++++|..+....
T Consensus 119 gv~v~~~d~-------~d~~~l~~~l~~~t~~v~~EspsNP~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~atp~---- 184 (386)
T PF01053_consen 119 GVEVTFVDP-------TDLEALEAALRPNTKLVFLESPSNPTLEV---PDLEAIAKLAKEHGDILVVVDNTFATPY---- 184 (386)
T ss_dssp TSEEEEEST-------TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTT----
T ss_pred CcEEEEeCc-------hhHHHHHhhccccceEEEEEcCCCccccc---ccHHHHHHHHHHhCCceEEeecccccee----
Confidence 888776642 38899999999999999999999999888 68999999999998 9999999986521
Q ss_pred CCCCccccCCCCCeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch
Q 014603 234 PFVPMGVFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE 311 (422)
Q Consensus 234 ~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~ 311 (422)
...+ ..++.| +++.|.+|.+++.|-- .|.+++++ .+++.++++.... .....++...+.+..-|+.
T Consensus 185 ~~~p-L~~GaD---ivv~S~TKyl~Ghsdv~~G~vv~~~------~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-- 252 (386)
T PF01053_consen 185 NQNP-LELGAD---IVVHSATKYLSGHSDVMGGAVVVNG------SSELYDRLREFRRLLGATLSPFDAWLLLRGLRT-- 252 (386)
T ss_dssp TC-G-GGGT-S---EEEEETTTTTTTSSSE-EEEEEESS------HHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT--
T ss_pred eecc-CcCCce---EEEeeccccccCCcceeeEEEEECc------hhhhhhhhcchhhhcCccchHHHHHHHhcCCCc--
Confidence 1112 223444 9999999998655533 56666543 1356666665543 3345666777776666765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----------------CCceEEEEecCcccccCCCCHHHHHHHHHH
Q 014603 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAK 375 (422)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (422)
+.-+.++..++...+.+.|+++|.+.-+.+| ..|..+.+.++.. .+.+..+++
T Consensus 253 ---l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~--------~~~~~~f~~ 321 (386)
T PF01053_consen 253 ---LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG--------EEAARRFLD 321 (386)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH--------HHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc--------hhhhHhHHh
Confidence 6777888889999999999998776534344 2334666777642 233344444
Q ss_pred hcCeE-EecC--CCC----------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 376 EESVI-VLPG--ITV----------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 376 ~~gi~-v~~g--~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
+-.+. ..+. ... +. ++.||+|++. |+.+.+++.|+++++
T Consensus 322 ~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl--Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 322 ALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL--EDPDDLIADLEQALE 386 (386)
T ss_dssp H-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S--S-HHHHHHHHHHHHH
T ss_pred hhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc--CCHHHHHHHHHHhcC
Confidence 44443 1111 110 01 4689999997 567778888888774
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=184.16 Aligned_cols=301 Identities=12% Similarity=0.076 Sum_probs=211.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH----HHHHHHHHHhcCC-CC----EEEecCCCccchHHHHhhCCCeEE
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCT----QAIEVILTVLARP-GA----NILLPRPGFPYYEARATHSHLEVR 159 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~----~a~~~~~~~l~~~-gd----~Vl~~~~~~~~~~~~~~~~g~~~~ 159 (422)
+.++|+.+++++ ..+.|.|+++++ ++++.+++++.++ || .|+++...|......+...|++++
T Consensus 570 ~~~~r~~la~i~--------g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv 641 (993)
T PLN02414 570 FEDLGDLLCEIT--------GFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIV 641 (993)
T ss_pred HHHHHHHHHHHh--------CCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEE
Confidence 456777777777 238999999998 8999999998765 87 899999999988888888999999
Q ss_pred EeeccCCCCcccCHHHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 160 HFDLLPAKGWEVDLDAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 160 ~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
.++.+. ++.+|+++|++.+++ +++++++++|+|-+|.. +++++|+++|+++|+++++|.++..... ...
T Consensus 642 ~v~~d~--~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e---~~I~eI~~iah~~Galv~vDgAq~~a~~---~l~ 713 (993)
T PLN02414 642 VVGTDA--KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYE---EGIDEICDIIHDNGGQVYMDGANMNAQV---GLT 713 (993)
T ss_pred EeccCC--CCCcCHHHHHHHHhccCCCeEEEEEECCCcccccc---chHHHHHHHHHHcCCEEEEEecCHHhcc---CcC
Confidence 999853 346999999999984 67899999999999988 6799999999999999999999965211 222
Q ss_pred CccccCCCCCeEEEecCccccCC----CCceeEEEEeeCCCCcccchhHHHHHHhh------------h-hhccC-----
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIV----PGWRLGWLVTSDPNGILQDSGIVDSIKSF------------L-NISSD----- 294 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~----- 294 (422)
....++.| ++++|.+|+|+. .|..+|++.+.. .+...+... . ...++
T Consensus 714 ~p~~~GaD---~~~~s~HK~f~~P~G~GGPg~G~l~~~~--------~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~ 782 (993)
T PLN02414 714 SPGFIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKK--------HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAP 782 (993)
T ss_pred CccccCCC---EEEecCCccCCcCcccCCCCeeeEEEch--------hhcccCCCCccccCCCcccccCCCCcCCccchh
Confidence 34455655 888999997753 346689987753 222222110 1 00112
Q ss_pred -cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE--EEEecCcccccCCCCHHHHHH
Q 014603 295 -PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFAL 371 (422)
Q Consensus 295 -~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 371 (422)
.+.+...++..++.....+++.+..++...+.++++++|++..++. ...|.+.++ +.+.++........+..++..
T Consensus 783 ~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~-~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~k 861 (993)
T PLN02414 783 WGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVL-FRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAK 861 (993)
T ss_pred hhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCeeeeEEEeccccccccCCCHHHHHH
Confidence 1113333444455554567888888889999999999998754444 223332211 112333110000124677888
Q ss_pred HHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 372 KLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 372 ~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+|+ ++|+.... ..|...+.+||+++ .+++|||++++.+..+..+..
T Consensus 862 rL~-d~Gihapt-~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 862 RLM-DYGFHAPT-MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred HHH-HcCcEEee-eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 876 77998654 33445789999998 688999999999998877654
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-18 Score=165.99 Aligned_cols=328 Identities=16% Similarity=0.169 Sum_probs=204.3
Q ss_pred CceeecCCCCCCCCC-CCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 46 PLIPLGHGDPSAFPS-FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~-~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
....|+.|.+..... ...++.-.+++.+.+..... .+++ ...++++.++++++ .+++++++||++++.
T Consensus 24 ~~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~-~~G~--~~~~fe~~lA~~~g--------~~~~v~~~sGt~al~ 92 (438)
T PRK15407 24 APKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWL-TTGR--FNDAFEKKLAEFLG--------VRYALLVNSGSSANL 92 (438)
T ss_pred ccccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcc-cCCh--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHH
Confidence 344567777642111 11223333444454443222 2333 35899999999993 347999999999999
Q ss_pred HHHHHh---------cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCC
Q 014603 125 VILTVL---------ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNP 195 (422)
Q Consensus 125 ~~~~~l---------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~np 195 (422)
.++.++ +++||+|+++.++|..+...+...|..++.+++++ .++.+|++.+++.+++++++++++++
T Consensus 93 ~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~~tkaVi~~~~--- 168 (438)
T PRK15407 93 LAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSPKTKAIMIAHT--- 168 (438)
T ss_pred HHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCcCCeEEEEeCC---
Confidence 998876 47899999999999999988889999999988764 45778999999999889999998875
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCC
Q 014603 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 196 tG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~ 272 (422)
+|.. .++++|.++|+++|++||+|++|+... +.|. .+..++ + +.++||+ |.+.. |- -|++++++
T Consensus 169 ~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~---~~G~~g-d---~~~fSf~~~k~~~~-ge-GG~l~t~d- 235 (438)
T PRK15407 169 LGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDGR---MTGTFG-D---IATLSFYPAHHITM-GE-GGAVFTND- 235 (438)
T ss_pred CCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCCe---eeeccC-c---eEEEeCCCCCCccc-cC-ceEEEECC-
Confidence 4443 578999999999999999999998643 3332 233333 1 5566665 54432 32 38999875
Q ss_pred CCcccchhHHHHHHhhhhhc----------------------------------------cCcchHHHHHHHHHHhhchH
Q 014603 273 NGILQDSGIVDSIKSFLNIS----------------------------------------SDPATFIQGAVPQILEKTEE 312 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~a~~~~l~~~~~ 312 (422)
+++.++++...... ...+.+..+.+..-|
T Consensus 236 ------~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL----- 304 (438)
T PRK15407 236 ------PLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQL----- 304 (438)
T ss_pred ------HHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHH-----
Confidence 45655554433211 011112222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCceE----EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCC-
Q 014603 313 EFFSKITDILRETADICCDRLKEIPC-ITCPKKPEGSMF----VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT- 386 (422)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~- 386 (422)
..+++..++-+++.+++.+.|+.+++ +.....+.+... +.+.++... + .+..++...| +++||...+...
T Consensus 305 ~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~Rd~l~~~L-~~~GI~~~~~~~~ 380 (438)
T PRK15407 305 EKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA--G-FTRVELVKYL-EENKIGTRLLFAG 380 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC--C-CCHHHHHHHH-HHCCCCccccCCC
Confidence 33666777777788888888888764 322222222211 222333210 1 1345666655 667997654221
Q ss_pred -CCC----------------------CCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 387 -VGL----------------------KDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 387 -~~~----------------------~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
+.. ...+-+-+. .++++++..++.|+++++
T Consensus 381 ~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 381 NLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred ccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 000 112222222 478999999999998875
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-19 Score=169.59 Aligned_cols=355 Identities=15% Similarity=0.142 Sum_probs=216.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.|.+++.+++..... .+.. ....+.+..+++.|....+ ...+.++|+++|++
T Consensus 28 ~dG~~ylD~~~g~~~~~lG-h~hp~v~~Ai~~ql~~~~~-~~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsE 102 (447)
T PRK06917 28 QNGNKYFDGSSGAVTAGIG-HGVKEIADAIKEQAEEVSF-VYRS-QFTSEPAEKLAKKLSDLSP--GDLNWSFFVNSGSE 102 (447)
T ss_pred CCCCEEEECchhHHhccCC-CCCHHHHHHHHHHHhhCcC-cccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCChHH
Confidence 3789999998886443222 4579999999999986321 1111 1112444455555554322 23358999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhC-CC------------eEEEeeccCCCC--ccc-------
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPAKG--WEV------- 171 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~~------- 171 (422)
|++.+++.... +| .+|+....+||++...+... +. .+..++...... +..
T Consensus 103 Ave~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 182 (447)
T PRK06917 103 ANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQL 182 (447)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHH
Confidence 99999986521 23 68999999999875544321 11 111111100000 000
Q ss_pred -CHHHHHHhhcC---CceEEEEeCC-CC-Cccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 172 -DLDAVEALADE---NTVALVIINP-GN-PCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 172 -d~~~l~~~~~~---~~~~i~i~~p-~n-ptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
+++.+++.++. +..+.++..| .. ..|. .+|++.++++.++|++||+++|+||++.++..+|... ....++..
T Consensus 183 ~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~-a~~~~gv~ 261 (447)
T PRK06917 183 ACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMF-AMEHWGVE 261 (447)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchh-hHHhcCCC
Confidence 23455666542 3466677777 33 3444 5678899999999999999999999999877666532 12233333
Q ss_pred CCeEEEecCccccCCCCc-eeEEEEeeCCCCcccchhHHHHHHhh-----hhhccCcchHHHHHHHHHHhhchHHHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGW-RLGWLVTSDPNGILQDSGIVDSIKSF-----LNISSDPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
++++ +++|.+ ..|. ++|.++++ +++++.+... ...+.+.++++.+++.+.|+...++ +.
T Consensus 262 PDi~---~~gK~l-~~G~~Pi~a~~~~--------~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l 326 (447)
T PRK06917 262 PDIM---TLGKGL-GAGYTPIAATVVS--------DRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKH---NL 326 (447)
T ss_pred CCEE---Eeeehh-ccCCcceEEEEEc--------HHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHC---CH
Confidence 3333 458995 5675 89999986 4677766532 1234567889999999998864322 23
Q ss_pred HHHHHHHHHHHHHHhhc----CCCCCCCCCCCCceEEEEecCcc-cc-cCCCC----HHHHHHHHHHhcCeEEecCCCC-
Q 014603 319 TDILRETADICCDRLKE----IPCITCPKKPEGSMFVMVKLNYS-LL-EGINS----DMEFALKLAKEESVIVLPGITV- 387 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~~~----~~~~~~~l~~~~gi~v~~g~~~- 387 (422)
.++++++-++|++.|++ .|.+. . ...-|.++.+.+... .. ..... ...+... +.++||++.+...-
T Consensus 327 ~~~~~~~g~~l~~~L~~l~~~~~~i~-~-vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~~~~~ 403 (447)
T PRK06917 327 PEKAAEKGEYLIKGLQKVQQQSTIIG-D-VRGKGLLIGVEFVADKKTKQPFSKSQAVASELISV-AAKNGLLLYPAVAGQ 403 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEE-E-EeecceEEEEEEeccCCcCCCCcchhHHHHHHHHH-HHhCCcEEEeccccc
Confidence 34455555555555544 33222 1 223466666666321 00 00001 2234444 45679999875211
Q ss_pred -C-CCCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 388 -G-LKDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 388 -~-~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+ ..+.+|+++. +++++|+++++++.+++++..+
T Consensus 404 ~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 404 DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 1478999987 8999999999999999987644
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-20 Score=167.98 Aligned_cols=354 Identities=18% Similarity=0.138 Sum_probs=218.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVG--ILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g--~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.+|+.++|-.+|.-...- -.-.|++.+|+.+|+..-......-... -.+|-+++++.. + +-+-++|+|++||
T Consensus 41 ~~G~r~lDg~sg~W~~~~-Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~a----P-~~~l~~vFf~~sG 114 (449)
T COG0161 41 IDGRRYLDGMSGLWCVNH-GHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELA----P-EGGLDHVFFTDSG 114 (449)
T ss_pred CCCCEEEecccHHHHhhc-CcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhC----C-CCCccEEEEeCCc
Confidence 357777776666422111 2346899999999998632110011111 234555555554 2 1236799999999
Q ss_pred HHHHHHHHHHhc-------CCC-CEEEecCCCccchHHHHhhCCC--------------eEEEeeccC-----C-CCcc-
Q 014603 120 TQAIEVILTVLA-------RPG-ANILLPRPGFPYYEARATHSHL--------------EVRHFDLLP-----A-KGWE- 170 (422)
Q Consensus 120 ~~a~~~~~~~l~-------~~g-d~Vl~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~-----~-~~~~- 170 (422)
++|++.+++... +|. .+++.-..+||+-...+...+. .+..++... . +.+.
T Consensus 115 SeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~ 194 (449)
T COG0161 115 SEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDE 194 (449)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChH
Confidence 999999987643 233 3588889999875333332221 111222111 0 1111
Q ss_pred ---cCHHHHHHhhcC---CceEEEEeCC-CCC-ccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 171 ---VDLDAVEALADE---NTVALVIINP-GNP-CGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 171 ---~d~~~l~~~~~~---~~~~i~i~~p-~np-tG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
-..++|++.+.. ++.+.+|..| ... +|+ ++|+..++++.++|++||+++|.||+-.+++++|+.+. ....
T Consensus 195 ~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA-~e~~ 273 (449)
T COG0161 195 EFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFA-CEHA 273 (449)
T ss_pred HHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhh-hhhc
Confidence 224566666543 6788888988 344 676 57778899999999999999999999999999987543 2334
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh------hhhccCcchHHHHHHHHHHhhch-HHH
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF------LNISSDPATFIQGAVPQILEKTE-EEF 314 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~-~~~ 314 (422)
+..++++. ++|.+...=+++|.++++ .++.+.+... +..+.+.++++++++.+.|+..+ +.+
T Consensus 274 gi~PDi~~---~aKGLT~GY~Pl~a~l~~--------~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l 342 (449)
T COG0161 274 GIVPDILC---LAKGLTGGYLPLSAVLTS--------DRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDL 342 (449)
T ss_pred CCCCCeee---ecccccccchhhHhHhhh--------HHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCH
Confidence 44444444 469864444888888876 3677777653 23456889999999999998755 333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC--C-CCHHHHHHHHHHhcCeEEecCCCCCCCC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--I-NSDMEFALKLAKEESVIVLPGITVGLKD 391 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 391 (422)
+++..+.-....+.|.+.|.+.|.+. - ...-|.+.-+++....... . ......+...+.++|++++|.. +
T Consensus 343 ~~~~~~~~~~l~~~L~~~l~~~p~Vg-d-VR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g-----~ 415 (449)
T COG0161 343 LERVAEIGAYLQAGLQAALADHPLVG-D-VRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG-----D 415 (449)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcEE-E-eeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecC-----C
Confidence 44433333333444443344334433 1 2344677777764321100 0 0123344555667899999972 4
Q ss_pred eEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 392 WLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 392 ~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.+=+++. .++++|+++++++++++++..+
T Consensus 416 ~i~~~PPliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 416 VIYLMPPLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred EEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 5666665 7899999999999999987654
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=171.79 Aligned_cols=227 Identities=19% Similarity=0.182 Sum_probs=156.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc
Q 014603 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (422)
|...+.++++.+|++++ . .+.+++++|+++++..++.+++++||+|+++.++|.+....+...|.+++.++..
T Consensus 57 ~~g~i~~~~~~~A~~~g------a-~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~ 129 (294)
T cd00615 57 PTGPIKEAQELAARAFG------A-KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPE 129 (294)
T ss_pred CChHHHHHHHHHHHHhC------C-CCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCc
Confidence 44557899999999983 2 2345569999999999999999999999999999999888888899998888764
Q ss_pred CCCC----cccCHHHHHHhhc--CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCCC
Q 014603 165 PAKG----WEVDLDAVEALAD--ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH-LAFGNTPFVP 237 (422)
Q Consensus 165 ~~~~----~~~d~~~l~~~~~--~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~-~~~~~~~~~~ 237 (422)
.... ..+|++.+++.++ ++++++++++| |++|.++ ++++|+++|+++|+++|+|++|+. +.+.+..+..
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~---dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~ 205 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICY---NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSS 205 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEec---CHHHHHHHHHhcCCeEEEECcchhhhccCcccCcc
Confidence 4332 3689999999885 46788999998 7899996 478899999999999999999974 2333322212
Q ss_pred ccccCCCCCeEEEecCccccCCCCceeEEEE-eeCCCCcccchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHH
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLV-TSDPNGILQDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
.... +..+++.|++|++ +|++.|+++ .++. .. ...++..... .+++++.....++..+++.....
T Consensus 206 ~~~~---~~div~~S~hK~l--~g~~~~~~l~~~~~--~~----~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~- 273 (294)
T cd00615 206 AAMA---GADIVVQSTHKTL--PALTQGSMIHVKGD--LV----NPDRVNEALNLHQSTSPSYLILASLDVARAMMALE- 273 (294)
T ss_pred hhhc---CCcEEEEchhccc--chHhHHHHHHhCCC--cC----CHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH-
Confidence 2122 2349999999984 667665544 4321 11 1223332222 23466666666666666542212
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 014603 315 FSKITDILRETADICCDRLK 334 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~ 334 (422)
-.+..+++.++.+.+++.|.
T Consensus 274 g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 274 GKELVEELIELALYARQEIN 293 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 23345556666666666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=162.94 Aligned_cols=287 Identities=15% Similarity=0.117 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCC--EEEecCHHHHHHHHHHHh--cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC
Q 014603 90 LPARRAIADYLNRDLPYKLSPDD--VYLTLGCTQAIEVILTVL--ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~--i~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (422)
.++++.+.+++.+.+| .++++ -++|+|||+++..++... ..++++|++++..|++....++.+|.+.+.++.++
T Consensus 64 ~~~e~~~~~~~a~l~g--~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~ 141 (380)
T PRK02769 64 FDFERDVMNFFAELFK--IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP 141 (380)
T ss_pred HHHHHHHHHHHHHHhC--CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCC
Confidence 4555555555544444 33444 488999999987766543 24678999999999999999999999888888754
Q ss_pred CCCcccCHHHHHHhhcCC---ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC---cEEEEcccccccccC---CCCCC
Q 014603 166 AKGWEVDLDAVEALADEN---TVALVIINPGNPCGNVYTYQHLQKIAETAKKLG---IMVIADEVYDHLAFG---NTPFV 236 (422)
Q Consensus 166 ~~~~~~d~~~l~~~~~~~---~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~---~~li~D~~~~~~~~~---~~~~~ 236 (422)
++.+|++.|++.++++ +.+++++.++|++|.+ +++++|.++|+++| +++++|.+|+.+... .....
T Consensus 142 --~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~i---dpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~ 216 (380)
T PRK02769 142 --NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAI---DNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPF 216 (380)
T ss_pred --CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCccc---CCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccC
Confidence 4569999999988775 8888999999999999 67888899999998 699999999874321 00011
Q ss_pred CccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh--------hhccCcchHHHHHHHHHHh
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL--------NISSDPATFIQGAVPQILE 308 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~ 308 (422)
++.. +. ..+..|.+|++++| ..+|+++.++ +..+.+.... ...++.+.....++-.+|+
T Consensus 217 d~~~-~v---Dsis~s~HK~~~~P-~g~G~l~~r~--------~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~ 283 (380)
T PRK02769 217 SFAD-GI---DSIAISGHKFIGSP-MPCGIVLAKK--------KYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIR 283 (380)
T ss_pred CccC-CC---CEEEECCcccCCCC-CCcEEEEEeh--------hhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHH
Confidence 2211 22 26778999996522 4489988864 2333331110 1123444455566666666
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC
Q 014603 309 KTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388 (422)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 388 (422)
......+++..++..++.+++.+.|++. ++..+..|... .+.++.+ ..++ . +|..+.+-
T Consensus 284 ~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~-~v~f~~~---------~~~~----~--~~w~l~~~---- 342 (380)
T PRK02769 284 SLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSI-TVVFPCP---------SERI----W--KKWHLATS---- 342 (380)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCce-EEEEcCC---------CHHH----H--hCeeEccc----
Confidence 6566788999999999999999999886 77756566533 3333332 1222 2 35555442
Q ss_pred CCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 389 LKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 389 ~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
++++||++. ++.+.++.+++.|...+...
T Consensus 343 -~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~~ 373 (380)
T PRK02769 343 -GNQAHIITMPHHNKQQIDSLIDELIFDLKNP 373 (380)
T ss_pred -CCEEEEEECCCCCHHHHHHHHHHHHHHHhcc
Confidence 357899987 67889999999998887644
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=171.86 Aligned_cols=349 Identities=12% Similarity=0.086 Sum_probs=214.1
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|...... -..+|+|.+++.+++.+... ........+.+..+++.|.+.. +...+.++++++|++
T Consensus 53 ~dG~~ylD~~~g~~~~~l-Gh~~p~v~~Ai~~ql~~l~~--~~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~SGse 127 (460)
T PRK06916 53 VNGNEYYDGVSSIWLNVH-GHQVPELDEAIREQLNKIAH--STLLGLANVPSILLAEKLIEVV--PEGLKKVFYSDSGAT 127 (460)
T ss_pred CCCCEEEEcchhHHHhhc-CCCCHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHHhC--CCCCCEEEEeCCcHH
Confidence 368899999877543222 24678999999999986211 1110111233444555554432 223368999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCC--Ccc--------
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAK--GWE-------- 170 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~-------- 170 (422)
|++.+++.... +| .+|+....+||+....+..... .+..+|..... .+.
T Consensus 128 Ave~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~ 207 (460)
T PRK06916 128 AVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVK 207 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHH
Confidence 99999886432 33 6899999999987544433211 11222211000 000
Q ss_pred cCHHHHHHhhc--CCceEEEEeCC--CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 171 VDLDAVEALAD--ENTVALVIINP--GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 171 ~d~~~l~~~~~--~~~~~i~i~~p--~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
.+++.+++.++ .+..+.+|..| +...|.+ +|++.++++.++|+++|+++|+||++.++.++|... ....++..+
T Consensus 208 ~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~-a~~~~gv~P 286 (460)
T PRK06916 208 KHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHENVTP 286 (460)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh-HHHhcCCCC
Confidence 12455666664 24456667777 5566764 688899999999999999999999999887777532 222333333
Q ss_pred CeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHh--------hhhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 246 PVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKS--------FLNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
+++ +++|.+ ..| +++|.++++ +++.+.+.. ....+.+.++++++++.+.|+...+.
T Consensus 287 Div---~~gK~l-~gG~~Pi~av~~~--------~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~--- 351 (460)
T PRK06916 287 DIM---TAGKGL-TGGYLPIAITVTT--------DEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKT--- 351 (460)
T ss_pred Cee---eeehhh-hcCccccceeeec--------HHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhc---
Confidence 444 357995 567 599999986 467666542 11234467889999999888764322
Q ss_pred HHHHHHHHHHHHHHHHhhcC---CCCCCCCCCCCceEEEEecCcccc-c-CCCC----HHHHHHHHHHhcCeEEecCCCC
Q 014603 317 KITDILRETADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLL-E-GINS----DMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~~----~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
+..++++++-+++.+.|+++ +.+. . ...-|.++.+.+..... . .... ...+... +.++||++.+.
T Consensus 352 ~l~~~~~~~g~~l~~~l~~l~~~~~v~-~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~--- 425 (460)
T PRK06916 352 NLIEQVARKTEYVATQLEDLFALKHVG-D-IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKR-SRELGMLTRPL--- 425 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCeE-E-eecCCceeeEEeecccccccCCCchhhHHHHHHHH-HHHCCeEEEec---
Confidence 23445555555555555543 3222 1 22336666666632110 0 0000 1234444 45679999874
Q ss_pred CCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 388 GLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 388 ~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.+|+.++ +++++|++++++|+++++++.
T Consensus 426 --g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 426 --GNTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred --CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 257898876 789999999999999998764
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=167.62 Aligned_cols=353 Identities=14% Similarity=0.107 Sum_probs=211.5
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEe-cCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-PDDVYLT-LGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~-~g~ 119 (422)
.+|+.+|||..|......+ ..+|.|.+++.+++.+....... ....+.+..+++.+....+.... .+.++++ ++|
T Consensus 60 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~ql~~~~~~~~~--~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SG 136 (464)
T PRK06938 60 VEGRQFIDCLAGAGTLALG-HNHPVVIEAIQQVLADELPLHTL--DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTG 136 (464)
T ss_pred CCCCEEEEccCCccccccC-CCCHHHHHHHHHHHHhhhccccc--ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCc
Confidence 3688999998887553333 45789999999998642211111 11123444455555432221111 1356665 799
Q ss_pred HHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CC------------eEEEeeccCCCC--cc--------cCHH
Q 014603 120 TQAIEVILTVLA--RPGANILLPRPGFPYYEARATHS-HL------------EVRHFDLLPAKG--WE--------VDLD 174 (422)
Q Consensus 120 ~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~------------~~~~~~~~~~~~--~~--------~d~~ 174 (422)
++|++.+++... ....+|+....+||++...+... +. ++..++...... ++ .+.+
T Consensus 137 SEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 216 (464)
T PRK06938 137 TDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLH 216 (464)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHH
Confidence 999999988643 12368999999999875444331 10 122222211100 00 1255
Q ss_pred HHHHhhcC-----CceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCe
Q 014603 175 AVEALADE-----NTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV 247 (422)
Q Consensus 175 ~l~~~~~~-----~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (422)
.+++.+.+ +..+.+|..| +...|.+ +|.+.++++.++|++||+++|.||++.++.++|... ....++..+++
T Consensus 217 ~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~e~~gv~PDi 295 (464)
T PRK06938 217 YLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMF-AFEHAGIIPDV 295 (464)
T ss_pred HHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHH-HHHhcCCCCCE
Confidence 67776653 2456677778 4445664 568899999999999999999999999987777532 22334444444
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 326 (422)
+++ +|.+ ..|+++|.+++++ ++ +.+... ...+.+.++++++++.+.|+...++.+ .++.+++-
T Consensus 296 v~~---gKgl-ggG~PlsAv~~~~--------~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l---~~~~~~~G 359 (464)
T PRK06938 296 VVL---SKAI-GGSLPLAVVVYRE--------WL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRL---AEHAAAMG 359 (464)
T ss_pred EEe---eccc-cCCCceEEEeehh--------Hh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHH---HHHHHHHH
Confidence 444 6996 4689999999852 32 333222 233557889999999999886543322 23333333
Q ss_pred HHHHHHhh----cCCCCCCCCCCCCceEEEEecCccc-ccC----CC-C---HHHHHHHHHHhcCeEEecCCCCCCCCeE
Q 014603 327 DICCDRLK----EIPCITCPKKPEGSMFVMVKLNYSL-LEG----IN-S---DMEFALKLAKEESVIVLPGITVGLKDWL 393 (422)
Q Consensus 327 ~~l~~~L~----~~~~~~~~~~~~~g~~~~~~~~~~~-~~~----~~-~---~~~~~~~l~~~~gi~v~~g~~~~~~~~i 393 (422)
+++.+.|+ ++|.+. . ...-|.++.+.+.... ... .. + ...+... +.++|+++.++..+ .+.+
T Consensus 360 ~~l~~~L~~l~~~~~~i~-~-VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gll~~~~g~~--~~~l 434 (464)
T PRK06938 360 ERLREHLRQLQRDYPQLG-D-VRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRE-CLRRGLILELGGRH--GSVV 434 (464)
T ss_pred HHHHHHHHHHHHhCCCee-e-eeccceEEEEEeccCcccccccccCCccHHHHHHHHHH-HHHCCeEEeecCCC--CCEE
Confidence 33333333 344332 1 2344677777773210 000 00 0 1233343 45679999875322 4789
Q ss_pred EEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 394 RITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 394 Ris~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
|+.++ .++++++++++++++++.+.-
T Consensus 435 ~~~Ppl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 435 RFLPPLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred EEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 99876 789999999999999998754
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=169.98 Aligned_cols=351 Identities=15% Similarity=0.155 Sum_probs=208.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CC-C-CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CY-S-STVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y-~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
.+|+.+|||..|......++ .+|.|.+++.+++.+.... .+ . ......++.+++++++ +...+.++++++
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~------p~~~~~v~f~~S 123 (460)
T PRK12403 51 NDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLL------PGHYSHAIYTNS 123 (460)
T ss_pred CCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhC------CCCcCEEEEeCC
Confidence 36889999988864433343 6799999999999763211 11 1 1112234455555444 223468999999
Q ss_pred HHHHHHHHHHHhc-------CCCC-EEEecCCCccchHHHHhh-CCCe-----------EEEeeccCC--CCccc-----
Q 014603 119 CTQAIEVILTVLA-------RPGA-NILLPRPGFPYYEARATH-SHLE-----------VRHFDLLPA--KGWEV----- 171 (422)
Q Consensus 119 ~~~a~~~~~~~l~-------~~gd-~Vl~~~~~~~~~~~~~~~-~g~~-----------~~~~~~~~~--~~~~~----- 171 (422)
|++|++.+++... ++++ .|+....+||+....+.. .+.. +..+|.... .++..
T Consensus 124 GseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 203 (460)
T PRK12403 124 GSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEF 203 (460)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHH
Confidence 9999999998763 2333 456667788876443322 2211 112211000 00011
Q ss_pred ---CHHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 172 ---DLDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 172 ---d~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
+.+.+++.+. ++..+.++..| +...|.+ .|.+.++++.++|++||+++|+||+++++..+|.... ...++.
T Consensus 204 ~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a-~e~~gv 282 (460)
T PRK12403 204 GRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFA-HEHFGF 282 (460)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhh-hhhcCC
Confidence 1244555442 24455667777 4555654 6778899999999999999999999998877775432 233333
Q ss_pred CCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh-----hhhccCcchHHHHHHHHHHhhchHH-HHH
Q 014603 244 IVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF-----LNISSDPATFIQGAVPQILEKTEEE-FFS 316 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~-~~~ 316 (422)
.+++++ ++|.+ ..| +++|.++++ +++.+.+... ...+.+.++++++++.+.|+...++ .++
T Consensus 283 ~PDiv~---~gK~l-ggG~~Piga~v~~--------~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~ 350 (460)
T PRK12403 283 EPDTLS---IAKGL-TSGYVPMGGLVLS--------KRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVT 350 (460)
T ss_pred CCCeEE---Ecccc-cccccceEEEEEC--------HHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 334443 68995 557 489998875 4676666421 1234467889999999999865432 233
Q ss_pred HHH-HHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc--cCCCCHHHH---HHHHHHhcCeEEecCCCCCCC
Q 014603 317 KIT-DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL--EGINSDMEF---ALKLAKEESVIVLPGITVGLK 390 (422)
Q Consensus 317 ~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~---~~~l~~~~gi~v~~g~~~~~~ 390 (422)
+.. +.-...++.+.+..++.|.+. . ...-|.++.+.+..... ......... +...+.++|+.+.+. .
T Consensus 351 ~~~~~~g~~l~~~L~~l~~~~~~i~-~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----~ 423 (460)
T PRK12403 351 RVKDDTGPYLQRCLREVFGDHPLVG-E-VQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST-----L 423 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEE-e-EeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec-----C
Confidence 332 223333344443334444322 1 23446677776642110 000000111 222345679999753 2
Q ss_pred CeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 391 DWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 391 ~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.+|+++. .++++++++++++++++++..
T Consensus 424 ~~~~l~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 424 GRMIMAPALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899988 599999999999999998874
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-19 Score=184.43 Aligned_cols=344 Identities=16% Similarity=0.136 Sum_probs=210.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+|+.++||..|... . -..+|+|.+++.+++....... | ......++.+++++++ +...+.++|+++|++
T Consensus 583 dG~~ylD~~~~~~~--l-Gh~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~elae~L~~~~------p~~~~~v~f~~SGsE 652 (972)
T PRK06149 583 AGRSYLDMVNNVTV--L-GHGHPRLAAAAARQWSLLNTNSRF-HYAAVAEFSERLAALA------PDGLDTVFLVNSGSE 652 (972)
T ss_pred CCCEEEECCCCccc--c-CCCCHHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHhC------CCCcCEEEEeCCchH
Confidence 58889999987532 1 2368999999999987632221 2 1112334444444443 223468999999999
Q ss_pred HHHHHHHH---hcCCCCEEEecCCCccchHHHHhhC-C-----C--------eEEEeeccCC--CCcc-cC-----HHHH
Q 014603 122 AIEVILTV---LARPGANILLPRPGFPYYEARATHS-H-----L--------EVRHFDLLPA--KGWE-VD-----LDAV 176 (422)
Q Consensus 122 a~~~~~~~---l~~~gd~Vl~~~~~~~~~~~~~~~~-g-----~--------~~~~~~~~~~--~~~~-~d-----~~~l 176 (422)
|++.+++. ..+ ..+|+....+||++...+... + . .+..++.... ..+. .+ .+.+
T Consensus 653 A~e~AlklAr~~tg-r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~ 731 (972)
T PRK06149 653 ANDLAIRLAWAASG-RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDV 731 (972)
T ss_pred HHHHHHHHHHHhcC-CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHH
Confidence 99999884 333 367888888898765433211 0 0 0111211100 0011 11 1233
Q ss_pred HHhh-----cCCceEEEEeCC-CCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 177 EALA-----DENTVALVIINP-GNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 177 ~~~~-----~~~~~~i~i~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
++.+ ..+..+.+|+.| ....| ..+|++.++++.++|++||+++|+||++.+++..|.....+..++..++++
T Consensus 732 ~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv- 810 (972)
T PRK06149 732 VAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII- 810 (972)
T ss_pred HHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE-
Confidence 3322 124566677777 33345 567888999999999999999999999988877775433344444434444
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh--hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS--FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
+++|.+ ..|.++|+++++ +++++.+.. ....+.+.++++++++.+.|+...++ +..+..++.-+
T Consensus 811 --t~gK~l-g~G~Pl~av~~~--------~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e---~l~~~~~~~G~ 876 (972)
T PRK06149 811 --TMAKGM-GNGHPLGAVITR--------REIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREE---KLQENARRVGD 876 (972)
T ss_pred --Eecccc-cCCeeeEEEEEc--------HHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 568995 568999999986 467776653 12223467899999999999864433 23334444444
Q ss_pred HHHHHhhc----CCCCCCCCCCCCceEEEEecCccc--ccC-CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--
Q 014603 328 ICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSL--LEG-INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-- 398 (422)
Q Consensus 328 ~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-- 398 (422)
++++.|++ .|.+. . ...-|.++.+.+.... ... ......+...+ .++||++.+.... .+.+|+.+.
T Consensus 877 ~l~~~L~~l~~~~~~i~-~-vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l-~~~Gvl~~~~g~~--~~vl~~~Ppl~ 951 (972)
T PRK06149 877 HLKARLEALADRHPLIG-A-VHGMGLYLGVELVRDRQTLEPATEETAAICDRL-LELGVIMQPTGDH--LNILKIKPPLC 951 (972)
T ss_pred HHHHHHHHHHHhCCCeE-E-EeecceEEEEEEecCcccCCCChHHHHHHHHHH-HhCCeEEeecCCC--CCEEEEECCCc
Confidence 44444443 43232 1 2334677777763210 000 00123344444 5679999875321 478999887
Q ss_pred cChHHHHHHHHHHHHHHHH
Q 014603 399 VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~ 417 (422)
++++++++++++|++++.+
T Consensus 952 it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 952 LDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999865
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=168.11 Aligned_cols=306 Identities=21% Similarity=0.283 Sum_probs=202.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCC
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPG 143 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~ 143 (422)
++..+++.+.++++....++ ....++++.+++++ ..++++.++++|.|+.+++.++ +++||+|+++..+
T Consensus 5 ~e~~~~v~~~l~s~~~~~~g--~~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t 74 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLSTYG--PYVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYT 74 (363)
T ss_dssp HHHHHHHHHHHHHTCCSSSS--HHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS
T ss_pred HHHHHHHHHHHHhCCccCCC--HHHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCc
Confidence 45667778887776443333 34789999999999 4578999999999999999998 5799999999999
Q ss_pred ccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcc
Q 014603 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223 (422)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~ 223 (422)
|..........|.+++.+++++ +.+.+|++.+++.++++++++++++. .|.. .++.+|.++|+++|++||+|.
T Consensus 75 ~~~~~~ai~~~G~~pv~~Di~~-~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~---~d~~~i~~~~~~~~i~lIeD~ 147 (363)
T PF01041_consen 75 FPATASAILWAGAEPVFVDIDP-ETLNIDPEALEKAITPKTKAILVVHL---FGNP---ADMDAIRAIARKHGIPLIEDA 147 (363)
T ss_dssp -THHHHHHHHTT-EEEEE-BET-TTSSB-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-
T ss_pred chHHHHHHHHhccEEEEEeccC-CcCCcCHHHHHHHhccCccEEEEecC---CCCc---ccHHHHHHHHHHcCCcEEEcc
Confidence 9999999999999999999986 46789999999999999999997764 4544 479999999999999999999
Q ss_pred ccccccc-CCCCCCCccccCCCCCeEEEecC--ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc--------
Q 014603 224 VYDHLAF-GNTPFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-------- 292 (422)
Q Consensus 224 ~~~~~~~-~~~~~~~~~~~~~~~~~i~i~s~--sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 292 (422)
+++.... .|. .+..++ .+.++|| +|.+... ..|++++++ +++.++++......
T Consensus 148 a~a~g~~~~g~---~~G~~g----d~~~fSf~~~K~i~~g--eGG~v~~~~-------~~~~~~~~~~~~~g~~~~~~~~ 211 (363)
T PF01041_consen 148 AQAFGARYKGR---PVGSFG----DIAIFSFHPTKIITTG--EGGAVVTND-------PELAERARALRNHGRSRDAFRR 211 (363)
T ss_dssp TTTTT-EETTE---ETTSSS----SEEEEESSTTSSS-SS--S-EEEEEST-------HHHHHHHHHHTBTTEETSECST
T ss_pred ccccCceeCCE---eccCCC----CceEecCCCCCCCcCC--CCeeEEecH-------HHHHHHhhhhhccCcCcccccc
Confidence 9987432 232 223333 2777787 4775322 248888875 56777776654311
Q ss_pred ----------cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc-----eEEEEecCc
Q 014603 293 ----------SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS-----MFVMVKLNY 357 (422)
Q Consensus 293 ----------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-----~~~~~~~~~ 357 (422)
...+.+..+.+..-|+. +++..++-+++.+.+.+.|++++++.....+... ..+.+.++.
T Consensus 212 ~~~~~~~g~n~rm~~~~AAigl~QL~~-----L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~ 286 (363)
T PF01041_consen 212 YRHELPPGYNFRMSELQAAIGLAQLKR-----LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPD 286 (363)
T ss_dssp TEESSSS--B-B-BHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETC
T ss_pred ccccccCCcccccHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccc
Confidence 12233333343444443 6777777788888999999998876322222221 122334443
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCC-C-C------C----------------CCeEEEEec--cChHHHHHHHHHH
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGIT-V-G------L----------------KDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~-~------~----------------~~~iRis~~--~~~~~l~~~~~~l 411 (422)
... .+..++...| ++.||.+.+... + . . +..+-+-+. .++++++..++.|
T Consensus 287 ~~~---~~rd~l~~~L-~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~i 362 (363)
T PF01041_consen 287 EAL---ADRDELVEAL-RARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAI 362 (363)
T ss_dssp CGC---STHHHHHHHH-HHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHH
T ss_pred ccc---chHHHHHHHH-HHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhcc
Confidence 111 1345565555 667999987652 1 0 0 123444443 5788999888877
Q ss_pred H
Q 014603 412 K 412 (422)
Q Consensus 412 ~ 412 (422)
+
T Consensus 363 r 363 (363)
T PF01041_consen 363 R 363 (363)
T ss_dssp H
T ss_pred C
Confidence 4
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=171.28 Aligned_cols=353 Identities=14% Similarity=0.123 Sum_probs=209.9
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++....... .......+.+..+++.|.... +...+.++|+++|++
T Consensus 47 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~~~~~lae~L~~~~--p~~~~~v~f~~SGse 122 (456)
T PRK07480 47 SEGNKILDGMAGLWCVNVG-YGRKELADAAARQMRELPYYN-TFFKTTHPPAIELAAKLAEVA--PPGFNHVFFTNSGSE 122 (456)
T ss_pred CCCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHHhcCCcc-cccccCCHHHHHHHHHHHHhC--CCCcCEEEEeCCcHH
Confidence 4689999998876443222 457899999999997632110 000112244444555554432 223468999999999
Q ss_pred HHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhCC-Ce------------EEEeeccCC--CCcccC------
Q 014603 122 AIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHSH-LE------------VRHFDLLPA--KGWEVD------ 172 (422)
Q Consensus 122 a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~g-~~------------~~~~~~~~~--~~~~~d------ 172 (422)
|++.+++.... +| .+|+....+||+....+...+ .. +..++.... .....+
T Consensus 123 A~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 202 (456)
T PRK07480 123 ANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGL 202 (456)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHH
Confidence 99999876421 22 578999999988654332221 11 111110000 000011
Q ss_pred --HHHHHHhhc---CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 173 --LDAVEALAD---ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 173 --~~~l~~~~~---~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
.+.+++.+. .+..+.+|..| +...|. .+|.+.++++.++|++||+++|+||++.++..+|... ....++..+
T Consensus 203 ~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~P 281 (456)
T PRK07480 203 AAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWF-GSQHFGIKP 281 (456)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-hhhhcCCCC
Confidence 245554432 24456667777 455666 4677789999999999999999999999887777532 223334333
Q ss_pred CeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHh-----hhhhccCcchHHHHHHHHHHhhchHHH-HHHH
Q 014603 246 PVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKS-----FLNISSDPATFIQGAVPQILEKTEEEF-FSKI 318 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~ 318 (422)
+++ +++|.+ ..| +++|.++++ +++++.+.. ....+.+.++++++++.+.|+...++. +++.
T Consensus 282 Div---~~gK~l-~gG~~Pi~av~~~--------~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~ 349 (456)
T PRK07480 282 DLM---TIAKGL-TSGYIPMGAVGVG--------DRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERV 349 (456)
T ss_pred Cee---eeehhh-ccCCccceEEEEc--------HHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 433 457995 457 489999986 467776631 123455788999999999998654322 2222
Q ss_pred H-HHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc--cCCCC---HHHHHHHHHHhcCeEEecCCCCCCCCe
Q 014603 319 T-DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDW 392 (422)
Q Consensus 319 ~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~---~~~~~~~l~~~~gi~v~~g~~~~~~~~ 392 (422)
. +.-...++.+.+ ++++|.+. . ...-|.++.+.+..... ....+ ....+...+.++||++.+. .+.
T Consensus 350 ~~~~g~~l~~~l~~-l~~~~~i~-~-vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----~~~ 421 (456)
T PRK07480 350 RDDTGPYLQKRLRE-LADHPLVG-E-VRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV-----GDR 421 (456)
T ss_pred HHHHHHHHHHHHHH-hhcCCCee-e-EEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec-----CCE
Confidence 1 222233333333 34443222 1 22346677777732110 00001 1123333456679999763 267
Q ss_pred EEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 393 LRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+|+++. .++++|++++++|.+++.+..
T Consensus 422 l~~~Ppl~it~~eid~~~~~l~~al~~~~ 450 (456)
T PRK07480 422 MIISPPLVITHAEIDELVEKARKALDATA 450 (456)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999988 589999999999999998763
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-19 Score=184.30 Aligned_cols=346 Identities=14% Similarity=0.075 Sum_probs=213.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+|+.++||..|... . -..+|+|.+++.+++.....+ .|. .+.+..+++.|.+..+ ...+.++|++||++
T Consensus 622 dG~~ylD~~~g~~~--l-GH~hp~v~~Ai~~q~~~l~~~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~nSGsE 691 (1013)
T PRK06148 622 RGRAYLDCFNNVCH--V-GHAHPRVVAAAARQAARLNTNTRYL-----HDAIVAYAERLTATLP--DGLTVAFFVNSGSE 691 (1013)
T ss_pred CCCEEEEcccChhh--c-CCCCHHHHHHHHHHHhhcCCcCCcC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCcHH
Confidence 48889999888522 2 346899999999998763121 221 2334445555544322 23368999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCC-------------eEEEeeccC--CCCccc-C-------HHHH
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHSHL-------------EVRHFDLLP--AKGWEV-D-------LDAV 176 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~--~~~~~~-d-------~~~l 176 (422)
|++.+++... ....+|++...+||+....+..... .+..++... ...+.. + .+.+
T Consensus 692 A~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 771 (1013)
T PRK06148 692 ANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESV 771 (1013)
T ss_pred HHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHH
Confidence 9999988653 2236899999999887543222110 111111100 001111 1 1234
Q ss_pred HHhhc-----CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 177 EALAD-----ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 177 ~~~~~-----~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
++.+. .+..+.+|+.| ....|. .+|++.++++.++|+++|+++|.||++.++.++|........++..++++
T Consensus 772 ~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDiv- 850 (1013)
T PRK06148 772 AEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIV- 850 (1013)
T ss_pred HHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCccee-
Confidence 44332 24466677777 444454 56888899999999999999999999999887775333334444444443
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh--hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF--LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
+++|.+ ..|+++|.++++ +++++.+... ...+.+.++++++++.+.|+...++. ..++++++-+
T Consensus 851 --t~gK~l-ggG~Plgav~~~--------~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~---l~~~~~~~G~ 916 (1013)
T PRK06148 851 --TMGKPI-GNGHPMGAVVTT--------REIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDED---LQRNALEIGN 916 (1013)
T ss_pred --eecccc-cCCcceEEEEEc--------HHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHH
Confidence 347995 568999999986 4677776542 22455788999999999988654322 3333444444
Q ss_pred HHHHHhhc----CCCCCCCCCCCCceEEEEecCcccc-cCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--
Q 014603 328 ICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLL-EGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-- 398 (422)
Q Consensus 328 ~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-- 398 (422)
+|++.|++ .|.+. . ...-|.++.+.+..... ... .....+... +.++||++.+.... .+.+|+.++
T Consensus 917 ~l~~~L~~l~~~~~~i~-~-VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~-~~~~Gvl~~~~g~~--~~vlr~~Ppl~ 991 (1013)
T PRK06148 917 YLLAGLRELQDRFDIIG-D-VRGMGLFLGIELVTDRKTKAPATAIARYVKNG-ARERGILIGTEGPH--DNVLKIRPPLI 991 (1013)
T ss_pred HHHHHHHHHHHhCCCce-E-EeeeceEEEEEecCCccccCccHHHHHHHHHH-HHhCCeEEeccCCC--CCEEEEeCCcc
Confidence 44444443 43222 1 23346677776642110 000 012234444 45679999774322 478999887
Q ss_pred cChHHHHHHHHHHHHHHHHh
Q 014603 399 VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~~ 418 (422)
++++++++++++|++++.+.
T Consensus 992 it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 992 FSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999875
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=169.70 Aligned_cols=348 Identities=16% Similarity=0.165 Sum_probs=212.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC-CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF-NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.+|||..|......+ ..+|++.+++.+++..... ..+. ....+.+..+++.|.... +...+.++|++||+
T Consensus 48 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGs 122 (466)
T PRK07036 48 ADGRRYLDGIGGMWCVNVG-YGREEMADAIADQARRLPYYTPFG--DMTNAPAAELAAKLAELA--PGDLNHVFLTTGGS 122 (466)
T ss_pred CCCCEEEECcccHHhhcCC-CCCHHHHHHHHHHHHhCccccccc--ccCCHHHHHHHHHHHHhC--CCCcCEEEEeCCch
Confidence 3689999998886553333 4578999999999875311 1111 012244455555555432 22346899999999
Q ss_pred HHHHHHHHHhc------C-C-CCEEEecCCCccchHHHHhhCCC-------------eEEEeeccCC--CCcccC-----
Q 014603 121 QAIEVILTVLA------R-P-GANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPA--KGWEVD----- 172 (422)
Q Consensus 121 ~a~~~~~~~l~------~-~-gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~--~~~~~d----- 172 (422)
+|++.+++... . + ..+|+....+||+....+..... .+..++.... ...+..
T Consensus 123 eAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 202 (466)
T PRK07036 123 TAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFC 202 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHH
Confidence 99999988642 1 2 26899999999987544332211 1122221100 001111
Q ss_pred ---HHHHHHhhc---CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc-ccCC
Q 014603 173 ---LDAVEALAD---ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG-VFGS 243 (422)
Q Consensus 173 ---~~~l~~~~~---~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~-~~~~ 243 (422)
.+.+++.+. .+..+.+|..| +...|. .+|++.++++.++|++||+++|+||++.++.++|... ... .++.
T Consensus 203 ~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~~gv 281 (466)
T PRK07036 203 DFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFF-ASEAVFGI 281 (466)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhh-hhhhhcCC
Confidence 233444442 24566667777 555666 4678889999999999999999999999887776432 222 2333
Q ss_pred CCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHH
Q 014603 244 IVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
.++++ +++|.+ ..| +++|.++++ +++++.+... ...+.+.++++++++.+.|+...+.
T Consensus 282 ~PDiv---t~gK~l-~gG~~Pi~av~~~--------~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~- 348 (466)
T PRK07036 282 QPDII---TFAKGL-TSGYQPLGAVIIS--------ERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE- 348 (466)
T ss_pred CCCEE---EEcccc-ccCccccEEEEEc--------HHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 33333 457995 567 589999986 4677766531 1224577899999999998864322
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---CCCCCCCCCCCCceEEEEecCccc-ccCC-CC----HHHHHHHHHHhcCeEEecCC
Q 014603 315 FSKITDILRETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSL-LEGI-NS----DMEFALKLAKEESVIVLPGI 385 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~~~~~-~~~~-~~----~~~~~~~l~~~~gi~v~~g~ 385 (422)
+..++++++-+++++.|++ .|.+. . ...-|.++.+.+.... .... .. ...+.. .+.++||++.+..
T Consensus 349 --~l~~~~~~~g~~l~~~L~~l~~~~~v~-~-vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gvl~~~~~ 423 (466)
T PRK07036 349 --GLCEHVREVGPYFEERLASLRELPLVG-D-VRGDHLMACVECVADKGSKALLPEDIAIGQRIDR-HCQERGLLVRPLE 423 (466)
T ss_pred --CHHHHHHHHHHHHHHHHHHhccCCCEE-E-EEeeceEEEEEEccCccccCCCCchhHHHHHHHH-HHHHCCcEEeecC
Confidence 2334445555555555543 33222 1 2233667777774211 0000 01 123333 3567799997642
Q ss_pred CCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 386 TVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 386 ~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.+|+++. +++++|+++++++.++++++
T Consensus 424 -----~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 424 -----HLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred -----CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 57899976 69999999999999998776
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-19 Score=167.39 Aligned_cols=343 Identities=15% Similarity=0.086 Sum_probs=208.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|...... -..+|.+.+++.+++.......+ +. +.+..+++.+.+..+ ..+.++|+++|++
T Consensus 50 ~dG~~ylD~~~g~~~~~l-Gh~~p~v~~ai~~q~~~~~~~~~-~~----~~~~~la~~l~~~~p---~~~~v~f~~sGse 120 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIIT-GHAHPHITKAITEAAENGVLYGT-PT----ELEIEFAKMLKEAIP---SLEKVRFVNSGTE 120 (428)
T ss_pred CCCCEEEEcccccccccc-CCCCHHHHHHHHHHHHhCCccCC-CC----HHHHHHHHHHHHhCC---CCcEEEEeCCHHH
Confidence 368999999888655322 24678999999999986432222 22 334445555544322 2468999999999
Q ss_pred HHHHHHHHhcC--CCCEEEecCCCccchHHHHhhC-CCeEEEe------ecc--CCCC-c---ccCHHHHHHhhcC--Cc
Q 014603 122 AIEVILTVLAR--PGANILLPRPGFPYYEARATHS-HLEVRHF------DLL--PAKG-W---EVDLDAVEALADE--NT 184 (422)
Q Consensus 122 a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~------~~~--~~~~-~---~~d~~~l~~~~~~--~~ 184 (422)
|++.+++.... ...+|+....+||++...+... +...... ... ...+ . ..|++.+++.+.. +.
T Consensus 121 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 200 (428)
T PRK12389 121 AVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDE 200 (428)
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCc
Confidence 99999886432 2368999999999875544322 2111000 000 0000 0 1167888877742 34
Q ss_pred eEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 185 VALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
.+.++..| ....|.+ +|.+.+++|.++|++||+++|+||++.++ ..+... ....++..+++ -+++|.+ ..|+
T Consensus 201 vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~-a~~~~gv~PDi---vt~gK~l-ggG~ 274 (428)
T PRK12389 201 VAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGG-AQDLLGVEPDL---TALGKII-GGGL 274 (428)
T ss_pred EEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcch-hhHHhCCCCCe---eeechhh-cCCC
Confidence 55666666 5556764 56788999999999999999999999987 443221 11122333333 3568995 5679
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHh----hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKS----FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE--- 335 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 335 (422)
++|.++++ +++++.+.. ....+.+.++++++++.+.|+...++ +..++++++-+++++.|++
T Consensus 275 Pi~av~~~--------~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~ 343 (428)
T PRK12389 275 PIGAYGGR--------KDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAE 343 (428)
T ss_pred ceeEEeEH--------HHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 467777642 12234577889999999998864322 2344455555555555543
Q ss_pred -CCCCCCCCCCCCceEEEEecCcccccC--------CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHH
Q 014603 336 -IPCITCPKKPEGSMFVMVKLNYSLLEG--------INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALED 406 (422)
Q Consensus 336 -~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~ 406 (422)
+|.+. ......| ++.+.+....... ......+... +.++||.+.+.. .+.+.+++.++++++++
T Consensus 344 ~~~~~~-~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~~~~~~----~~~~~~~l~~t~e~id~ 416 (428)
T PRK12389 344 KHGITI-TINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKL-MLNQGINLAPSK----YEAWFLTTAHTEEDIEE 416 (428)
T ss_pred hCCCCE-EEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHH-HHHCCcEeecCC----CCCeeecCCCCHHHHHH
Confidence 43221 1112234 3334442210000 0002234444 456799998753 12356666789999999
Q ss_pred HHHHHHHHHHH
Q 014603 407 GLGRMKAFYDR 417 (422)
Q Consensus 407 ~~~~l~~~~~~ 417 (422)
+++++++++++
T Consensus 417 ~~~~l~~~l~~ 427 (428)
T PRK12389 417 TLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=157.23 Aligned_cols=348 Identities=18% Similarity=0.147 Sum_probs=229.6
Q ss_pred HhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCE
Q 014603 36 LENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDV 113 (422)
Q Consensus 36 ~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i 113 (422)
++++...+|+.++|+..|..+...+ ..+|.+.+++.+++..- ....|... -..++.+++++.+ +-+-+.+
T Consensus 41 ~~ylyDe~G~ryLD~f~Gi~tvslG-HchP~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~------P~~l~~v 112 (442)
T KOG1404|consen 41 GQYLYDEEGRRYLDAFGGIVTVSLG-HCHPDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKL------PGDLKVV 112 (442)
T ss_pred eEEEEcCCCceeehhhCCeEEEEcC-CCChHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhC------CCCceEE
Confidence 3455555799999999998765443 57899999999998542 23355543 3568888888887 5566789
Q ss_pred EEecCHHHHHHHHHHHhcC-CC-CEEEecCCCccchHHHHh-hCCCeEEEeecc-----------CC---CCccc-----
Q 014603 114 YLTLGCTQAIEVILTVLAR-PG-ANILLPRPGFPYYEARAT-HSHLEVRHFDLL-----------PA---KGWEV----- 171 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l~~-~g-d~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~-----------~~---~~~~~----- 171 (422)
+|++||++|+++++..... -| -.++....+|++....+. ..+......+.. |. ..|+-
T Consensus 113 fF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e 192 (442)
T KOG1404|consen 113 FFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEE 192 (442)
T ss_pred EEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhh
Confidence 9999999999998876421 22 377888888887654433 223322222111 10 00000
Q ss_pred ----CHHHHHHhh---cCCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 172 ----DLDAVEALA---DENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 172 ----d~~~l~~~~---~~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
-.+++++.+ .+++.+.++..+ +...|++ +|+..+++..++|+++|.++|.||+++++.++| .+..++..+
T Consensus 193 ~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~ 271 (442)
T KOG1404|consen 193 ASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG-HMWGFESHG 271 (442)
T ss_pred hHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc-ccccccccC
Confidence 113444443 235677777777 5555654 788999999999999999999999999999888 444554444
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh--hhccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL--NISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
. +--+-+++|. .+.|+++|.+++. +++.+-+.... ..+...++++.+++.+.|+...++.+.+..+
T Consensus 272 v---~PDIvTmAKg-iGnG~Pl~AVvtt--------~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa 339 (442)
T KOG1404|consen 272 V---VPDIVTMAKG-IGNGFPLGAVVTT--------PEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAA 339 (442)
T ss_pred C---CccHHHHHhh-ccCCCcceeeecC--------HHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHH
Confidence 3 3446678899 5788999999986 67888876655 2356888999999999998766555554443
Q ss_pred HHHHHHHHHHHHhhcC----CCCCCCCCCCCceEEEEecCcccccCC--C-CHHHHHHHHHHhcCeEEecCCCCCCCCeE
Q 014603 321 ILRETADICCDRLKEI----PCITCPKKPEGSMFVMVKLNYSLLEGI--N-SDMEFALKLAKEESVIVLPGITVGLKDWL 393 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 393 (422)
+.-.+|++.|.++ |-+- - ...-|.++.+++-....+.. . ....+..+.+++.|+.|.-|..++ +.+
T Consensus 340 ---~vG~yl~~~l~~l~d~h~iIG-d-VRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G--~vf 412 (442)
T KOG1404|consen 340 ---EVGSYLLEKLAALKDKHPIIG-D-VRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHG--NVF 412 (442)
T ss_pred ---HHHHHHHHHHHHHhhcCCcee-e-cccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccc--eEE
Confidence 4444455555443 3232 1 23346777777643321111 0 112344555788899997777665 499
Q ss_pred EEEec--cChHHHHHHHHHH
Q 014603 394 RITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 394 Ris~~--~~~~~l~~~~~~l 411 (422)
||++. .+.+|++.++...
T Consensus 413 riaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 413 RIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EecCCeeccHHHHHHHHHHH
Confidence 99987 7899997777754
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-19 Score=168.03 Aligned_cols=342 Identities=14% Similarity=0.103 Sum_probs=206.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|.+.+++.+++.... .+.. ..+.+..+++.+.+..+ ..+.+.|+++|++|
T Consensus 97 dG~~yiD~~~g~g~~~lG-h~~p~v~~av~~ql~~~~--~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA 167 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIG-HADDEVLAALAETMKKGT--SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGTEA 167 (474)
T ss_pred CCCEEEEecccccccccC-CCCHHHHHHHHHHHhhCC--CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChHHH
Confidence 588899998887553333 457899999999998643 2222 12445556666655432 24799999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHh-hC--CCeEE------EeeccCC-----CCcccCHHHHHHhhcC--Cc
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARAT-HS--HLEVR------HFDLLPA-----KGWEVDLDAVEALADE--NT 184 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~-~~--g~~~~------~~~~~~~-----~~~~~d~~~l~~~~~~--~~ 184 (422)
.+.+++... ...++|+....+||++..... .. +.... .++.... -.+ -|++.+++.+.. +.
T Consensus 168 ~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~~~ 246 (474)
T PLN02482 168 CMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEANKGE 246 (474)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhCCCc
Confidence 999988643 123689999999999753211 10 00000 0000000 011 167888887753 34
Q ss_pred eEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 185 VALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
.+.+|..| ....|.+. +++.++++.++|++||+++|+||++.++ +.+.. .....++..+++ .+++|.+ ..|+
T Consensus 247 iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~-ga~~~~gv~PDi---~t~gK~l-ggG~ 320 (474)
T PLN02482 247 IAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYG-GAQEYFGITPDL---TTLGKVI-GGGL 320 (474)
T ss_pred eEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcc-hHhHHhCCCCCE---EEecchh-hCCC
Confidence 56677777 45567654 5788999999999999999999999876 44432 122223333333 3568996 4789
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP- 337 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 337 (422)
++|.++++ +++++.+... ...+.+.+++.++++.+.|+...+ ++..++++++-+++++.|+++.
T Consensus 321 Pigav~g~--------~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~ 389 (474)
T PLN02482 321 PVGAYGGR--------REIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEAGK 389 (474)
T ss_pred ceEEEEEc--------HHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 5777777532 122345788888888888876432 2344555555555555555430
Q ss_pred --CCCCCCCCCCceEEEEecCcccc---cC--CCC---HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHH
Q 014603 338 --CITCPKKPEGSMFVMVKLNYSLL---EG--INS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDG 407 (422)
Q Consensus 338 --~~~~~~~~~~g~~~~~~~~~~~~---~~--~~~---~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~ 407 (422)
++.+......+++ .+.+..... .. ..+ ...+...+ .++||++.|.... .+ -+++.+++++|+++
T Consensus 390 ~~g~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l-~~~Gv~~~~~~~~---~~-~psl~ht~~dId~~ 463 (474)
T PLN02482 390 KAGHEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGM-LEEGVYLAPSQFE---AG-FTSLAHTEEDIDFT 463 (474)
T ss_pred hcCCCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHH-HHCCeEEeccCCC---CC-cCCCCCCHHHHHHH
Confidence 1221112223333 232321100 00 001 12344444 5679999874321 11 15566899999999
Q ss_pred HHHHHHHHHH
Q 014603 408 LGRMKAFYDR 417 (422)
Q Consensus 408 ~~~l~~~~~~ 417 (422)
++++++++++
T Consensus 464 l~al~~~l~~ 473 (474)
T PLN02482 464 IAAAERVLAR 473 (474)
T ss_pred HHHHHHHHHh
Confidence 9999999865
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=163.40 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCC----C--CEEEecCCCccchHHHHhhCCCeEEEe
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP----G--ANILLPRPGFPYYEARATHSHLEVRHF 161 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~----g--d~Vl~~~~~~~~~~~~~~~~g~~~~~~ 161 (422)
..++|++.|.++....-..-.+...|++++|+|+.+++++.+|... + -.|+...|.|+.|......+.......
T Consensus 44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w 123 (363)
T PF04864_consen 44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKW 123 (363)
T ss_dssp S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEE
T ss_pred ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccc
Confidence 3578888888766543333345568999999999999999998543 1 389999999999988887665443332
Q ss_pred eccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 162 DLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
.- |...+...-+..+-+=++++||||.|.+ .+.++ +..+..+|.|-+|..-.|+. +..-
T Consensus 124 ~G--------da~~~~~~~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp-----I~~~ 182 (363)
T PF04864_consen 124 AG--------DASNFKNSDNPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP-----ITAP 182 (363)
T ss_dssp EE--------ECCCGTT-S-CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS--------S-
T ss_pred cc--------cHHhhccCCCCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccc-----cCCC
Confidence 21 2122211111234445899999999988 34444 35667789999998754442 2221
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchH--------
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEE-------- 312 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~-------- 312 (422)
.+..+.++|+||.-|-+|.|+||.++.| +++..+|..+... +.+++.=+|.-+..+|+...+
T Consensus 183 --aD~DiMLFT~SK~TGHAGSR~GWAlVKD-------~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~ 253 (363)
T PF04864_consen 183 --ADHDIMLFTLSKLTGHAGSRFGWALVKD-------EEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGT 253 (363)
T ss_dssp --B--SEEEEEHHHHCS-GGG-EEEEEES--------HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTT
T ss_pred --CCCceEEEEEecccCccccccceeeecC-------HHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCc
Confidence 1223999999999899999999999986 6788888888754 447777888888887765321
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC------------CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCe
Q 014603 313 -EFFSKITDILRETADICCDRLKEIPCITCPK------------KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 379 (422)
Q Consensus 313 -~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 379 (422)
..+.--.+.+++|.+.|.+.++.-.-+.+.. ......|.|+++... ..+.+...+++.||
T Consensus 254 ~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-------ed~DC~~~l~~~~I 326 (363)
T PF04864_consen 254 EDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-------EDEDCYAVLREAKI 326 (363)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC-------GGSSHHHHHHCTTE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc-------ccccHHHHHHhCCc
Confidence 2566667889999999999988531111110 112345999999753 22334556678899
Q ss_pred EEecCCCCCC-CCeEEEEeccChHHHHHHHHHHHH
Q 014603 380 IVLPGITVGL-KDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 380 ~v~~g~~~~~-~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
..+.|..|+. ..++|||+--++++++.++++|..
T Consensus 327 ~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 327 ITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSK 361 (363)
T ss_dssp EEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHC
T ss_pred ccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHh
Confidence 9999999987 679999999999999999999875
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-19 Score=167.61 Aligned_cols=342 Identities=16% Similarity=0.125 Sum_probs=211.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|......+ ..+|++.+++.+++.+......... ..+....+++.+.+..+ ...+.++++++|++|
T Consensus 43 dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~--~~~~~v~f~~sGseA 117 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHG-YNHPRLNAAAQKQIDKMSHVMFGGF--THKPAIELCQKLVKMTP--NALDCVFLADSGSVA 117 (427)
T ss_pred CCCEEEEccchHHHhcCC-CCCHHHHHHHHHHHHhcCCcccccc--CCHHHHHHHHHHHhhCC--CCCCEEEEeCCcHHH
Confidence 688999999886554333 5678999999999876321111100 11223334444443222 234689999999999
Q ss_pred HHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhC-CCe-------------EEEeeccCCCCc-----ccCHHH
Q 014603 123 IEVILTVLAR-------PG-ANILLPRPGFPYYEARATHS-HLE-------------VRHFDLLPAKGW-----EVDLDA 175 (422)
Q Consensus 123 ~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~-g~~-------------~~~~~~~~~~~~-----~~d~~~ 175 (422)
++.+++.... +| .+|+....+|++....+... +.. ...++. +...+ .-|.++
T Consensus 118 ~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 196 (427)
T TIGR00508 118 VEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPA-PQNRFDEEWNEEAITP 196 (427)
T ss_pred HHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCC-CCccccchhHHHHHHH
Confidence 9998875431 23 68999999999875433322 211 011111 10111 013456
Q ss_pred HHHhhcC--CceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEE
Q 014603 176 VEALADE--NTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250 (422)
Q Consensus 176 l~~~~~~--~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i 250 (422)
+++.+.. +..+.+++.| +...|. .++.+++++|.++|++||+++|+||++.++.++|..... ..++..++++
T Consensus 197 l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~-~~~~v~pDi~-- 273 (427)
T TIGR00508 197 LAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFAC-EHAGVVPDIL-- 273 (427)
T ss_pred HHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchh-hhcCCCCCEE--
Confidence 6666542 3456677777 455555 457899999999999999999999999887776654222 2223223333
Q ss_pred ecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014603 251 GSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323 (422)
Q Consensus 251 ~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 323 (422)
+++|.+ ..| ++++.++.+ +++++.+... ...+...++++.+++.++|+...+. +..++++
T Consensus 274 -~~gK~l-~gG~~p~~a~~~~--------~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~---~~~~~~~ 340 (427)
T TIGR00508 274 -CVGKAL-TGGYMTLSATVTT--------DKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEG---EWQKQVS 340 (427)
T ss_pred -Eechhh-hcCcccceEEEEc--------HHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence 368997 567 478888875 4677777542 1223356788888888888753321 3346666
Q ss_pred HHHHHHHHHhhcCCCCCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cC
Q 014603 324 ETADICCDRLKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VE 400 (422)
Q Consensus 324 ~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~ 400 (422)
++.+++++.|+++...... ....-|.+..+.+... .....+..++ .++||.+.+.. +.+|++++ ++
T Consensus 341 ~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~-----~~~~~~~~~l-~~~Gv~~~~~~-----~~l~~~ppl~~t 409 (427)
T TIGR00508 341 AIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKP-----VNVEELQKKF-VEQGVWIRPFG-----KLIYVMPPYIIT 409 (427)
T ss_pred HHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCc-----cCHHHHHHHH-HHCCeEEEecC-----CEEEEECCCCCC
Confidence 6667777777665211101 0112255666666421 1344555554 56799997642 47999987 78
Q ss_pred hHHHHHHHHHHHHHHHH
Q 014603 401 PSALEDGLGRMKAFYDR 417 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~ 417 (422)
+++|+++++++++++.+
T Consensus 410 ~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 410 TEQLQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-18 Score=152.77 Aligned_cols=324 Identities=16% Similarity=0.177 Sum_probs=227.9
Q ss_pred CCCCCCcHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc
Q 014603 58 FPSFRTASVAVDAIVHSVRSARF------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA 131 (422)
Q Consensus 58 ~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~ 131 (422)
|.+...+|.|.+||++.++.... +--+......+|++.+|++-+ .+..++.++.--|+...+..|.
T Consensus 181 YLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--------K~aALlFsSCfVANDstLftLa 252 (570)
T KOG1360|consen 181 YLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--------KEAALLFSSCFVANDSTLFTLA 252 (570)
T ss_pred cccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--------CcceeeeeeeeeccchHHHHHH
Confidence 56667899999999999986321 111223446789999999873 3445555565666666666553
Q ss_pred --CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC----CceEEEEeCCCCCcccccCHHHH
Q 014603 132 --RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE----NTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 132 --~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p~nptG~~~~~~~l 205 (422)
-||-+|+.....|.+.....+..+.+-..+..+ |++.|++++.. -++++.+...+..+|.+. ++
T Consensus 253 k~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHN-------D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc---pl 322 (570)
T KOG1360|consen 253 KKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHN-------DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC---PL 322 (570)
T ss_pred HHCCCcEEeccccchHHHHHHhhhcCCcceeeccC-------CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC---CH
Confidence 388999999999998888888888776665532 67777776643 467788889999999995 57
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC-eEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
++|++++++||.+-++||++....|+.++..--+.-+.-++ .|+.+++.|.||+-| ||+... ..+++.
T Consensus 323 eelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat--------~~LvDm 391 (570)
T KOG1360|consen 323 EELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAAT--------RKLVDM 391 (570)
T ss_pred HHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhh--------hhHHHH
Confidence 88888999999999999999987776544322111111112 388899999999888 999875 357777
Q ss_pred HHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 285 IKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 285 ~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++.+.. ++.+.++..+..+.++.+....+.-...++..+++..++++.|.++ |+.+. |....++-+++.+.
T Consensus 392 iRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi--~~pSHIiPv~vgda--- 465 (570)
T KOG1360|consen 392 IRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIPVI--PNPSHIIPVRVGDA--- 465 (570)
T ss_pred HHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCcceeeeeccCH---
Confidence 776642 2334455566666666654332222445566778888899999988 77643 33334555555432
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
..+.+..+.|+.+++|+|....++.. ...+||.++ .+++.++.+++.+..++.++
T Consensus 466 --~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 466 --ALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred --HHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 13556777888999999998877655 457999987 78899999999999988765
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-18 Score=162.90 Aligned_cols=357 Identities=15% Similarity=0.097 Sum_probs=210.5
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-PDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~~g~~ 120 (422)
.+|+.+|||..|......+ ..+|++.+++.+++......... ....+.+..+++.|....+.... ...++++++|+
T Consensus 55 ~dG~~ylD~~~g~~~~~lG-H~~p~v~~Ai~~q~~~~~~~~~~--~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGs 131 (459)
T PRK06931 55 VEGNQYLDCLAGAGTLALG-HNHPDVLQSIQDVLTSGLPLHTL--DLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGA 131 (459)
T ss_pred CCCCEEEEcccchhhccCC-CCCHHHHHHHHHHHhhhcccccc--ccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcH
Confidence 4689999999987553333 46789999999998752211111 11234555566666543321101 12346668999
Q ss_pred HHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCC--Ccc----cCHHHH---
Q 014603 121 QAIEVILTVLA--RPGANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAK--GWE----VDLDAV--- 176 (422)
Q Consensus 121 ~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~----~d~~~l--- 176 (422)
+|++.+++... ...++|+....+||++...+..... ++..++..... .+. -+.+.+
T Consensus 132 EAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (459)
T PRK06931 132 DAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYY 211 (459)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHH
Confidence 99999988642 2336899999999988655553211 12222221100 000 012222
Q ss_pred -HHhhc-----CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeE
Q 014603 177 -EALAD-----ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL 248 (422)
Q Consensus 177 -~~~~~-----~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i 248 (422)
++.+. .+..+.+|..| +...|. .+|.+.++++.++|++||+++|.||++.++.++|... ....++..++++
T Consensus 212 ~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~-a~~~~gv~PDiv 290 (459)
T PRK06931 212 FENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF-AFEHAGIEPDII 290 (459)
T ss_pred HHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHH-HhhhcCCCCCEE
Confidence 33332 13456677777 444565 4678889999999999999999999999987777532 233344334444
Q ss_pred EEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETA 326 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~ 326 (422)
+ ++|.+ ..|+++|.++.++ + ++.+... ...+.+.++++++++.+.|+...++ .+++..+.-...+
T Consensus 291 t---~gK~l-~gG~Pi~av~~~~--------~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~ 357 (459)
T PRK06931 291 V---MSKAV-GGGLPLAVLGIKK--------E-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLK 357 (459)
T ss_pred E---ecccc-cCCcceeeeeeHH--------H-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4 47995 5679999888742 2 2433222 2334578899999999998864432 2233222223333
Q ss_pred HHHHHHhhcCCCCCCCCCCCCceEEEEecCccc-cc----CCC-C---HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe
Q 014603 327 DICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-LE----GIN-S---DMEFALKLAKEESVIVLPGITVGLKDWLRITF 397 (422)
Q Consensus 327 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-~~----~~~-~---~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 397 (422)
+.|.+..+++|.+. . ...-|.++.+.+.... .. ... + ...+... +.++|+++.++.. ..+.+|+.+
T Consensus 358 ~~L~~l~~~~~~i~-~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gvl~~~~~~--~~~~l~~~P 432 (459)
T PRK06931 358 AQLAELQKRYPCIG-N-VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKA-CFENGLLLERGGR--NGNVVRLLP 432 (459)
T ss_pred HHHHHHHHhCCCeE-e-EecCceEEEEEEccCcccccccccCCccHHHHHHHHHH-HHHCCcEEeecCC--CCCEEEEEC
Confidence 33333323444332 1 2334667777763210 00 000 0 1233333 4567999976432 147899888
Q ss_pred c--cChHHHHHHHHHHHHHHHHhcc
Q 014603 398 A--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 398 ~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+ .++++++++++++.+++.+..|
T Consensus 433 pl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 433 PLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 7 7999999999999999988654
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=165.77 Aligned_cols=348 Identities=12% Similarity=0.037 Sum_probs=205.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++.......+ + .+.+..+++.+.+..+ ...+.++|+++|++
T Consensus 50 ~dG~~yiD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~-~----~~~~~~la~~L~~~~~--~~~~~v~f~~SGsE 121 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHG-HSHPKICDAIQQGAERGTSYGL-T----SEQEILFAEELFSYLG--LEDHKIRFVSSGTE 121 (433)
T ss_pred CCCCEEEEcccchhccccC-CCCHHHHHHHHHHHHhCCCCCC-C----CHHHHHHHHHHHHhCC--CCcCEEEEeCchHH
Confidence 3689999999887553222 4589999999999976432111 1 1233344444443222 22368999999999
Q ss_pred HHHHHHHHhcC--CCCEEEecCCCccchHHH---HhhCCCeE-----EEeeccCCCCc-----ccCHHHHHHhhcC--Cc
Q 014603 122 AIEVILTVLAR--PGANILLPRPGFPYYEAR---ATHSHLEV-----RHFDLLPAKGW-----EVDLDAVEALADE--NT 184 (422)
Q Consensus 122 a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~---~~~~g~~~-----~~~~~~~~~~~-----~~d~~~l~~~~~~--~~ 184 (422)
|++.+++.... ...+|+....+||++... +....... ......+.... .-|++.+++.+.. +.
T Consensus 122 A~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 201 (433)
T PRK00615 122 ATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHR 201 (433)
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCc
Confidence 99999886532 236899999999986521 11111000 00000000000 0167788877642 34
Q ss_pred eEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 185 VALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
.+++++.| ....|.. ++++.+++|.++|++||+++|+||++.++ +.|.. .....++..++++ +++|.+ ..|+
T Consensus 202 ~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~-ga~~~~gv~PDi~---~~gK~l-ggG~ 275 (433)
T PRK00615 202 VAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQG-GAAAIYHVKPDIT---VYGKIL-GGGL 275 (433)
T ss_pred eEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHh-HHHHhcCCCCCeE---EEcccc-cCCc
Confidence 55667777 4445664 56788999999999999999999999876 44432 1122233333333 368996 4568
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhhh----hhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSFL----NISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
++|+++++ +++++.+.... ..+.+.+++.++++.+.|+...+ ..+++..+.-...++.+.+.+++.
T Consensus 276 p~~av~~~--------~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~- 346 (433)
T PRK00615 276 PAAAVVAH--------KSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQ- 346 (433)
T ss_pred ceeeeeec--------HHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 89999986 46777764321 12345688889999998886432 223333333333333334444442
Q ss_pred CCCCCCCCCCceEEEEecCcccc---cCC-----CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLL---EGI-----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~---~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~ 409 (422)
++.+.... -|.++.+.+..... ... .....+...+ .++||++.|..... + =+|..+++++|+++++
T Consensus 347 g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~---~-~ls~~ht~~did~~~~ 420 (433)
T PRK00615 347 GFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSA-FSKGVYLSPSPFEA---S-FLSSAHSMENLDYAQN 420 (433)
T ss_pred CCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHH-HHCCeeecCccccc---c-ceecCCCHHHHHHHHH
Confidence 22211122 46666666643210 000 0012344444 56799998764211 1 3566689999999999
Q ss_pred HHHHHHHHh
Q 014603 410 RMKAFYDRH 418 (422)
Q Consensus 410 ~l~~~~~~~ 418 (422)
++++++.+.
T Consensus 421 a~~~~~~~~ 429 (433)
T PRK00615 421 VLIDSLEKV 429 (433)
T ss_pred HHHHHHHHH
Confidence 999999875
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-18 Score=156.34 Aligned_cols=282 Identities=19% Similarity=0.171 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
+....++++++++- ..+..+.+++|++|+..++.+++++||.|++++..|.+... ..+..|+++..+.
T Consensus 63 PT~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d 134 (396)
T COG0626 63 PTRDALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVD 134 (396)
T ss_pred ccHHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEEC
Confidence 34567888888875 45788999999999999999999999999999999977644 3445677776554
Q ss_pred ccCCCCcccCHHHHHHhhc-CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 163 LLPAKGWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
. .+.+.+++.+. ++++++++..|+||+-.+ .||.+|+++|+++|+++|+|..+....+ ..+ ..+
T Consensus 135 ~-------~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v---~DI~~i~~~A~~~g~~vvVDNTfatP~~----q~P-L~~ 199 (396)
T COG0626 135 P-------GDDEALEAAIKEPNTKLVFLETPSNPLLEV---PDIPAIARLAKAYGALVVVDNTFATPVL----QRP-LEL 199 (396)
T ss_pred C-------CChHHHHHHhcccCceEEEEeCCCCccccc---ccHHHHHHHHHhcCCEEEEECCcccccc----cCh-hhc
Confidence 2 24456666666 599999999999999888 6899999999999999999999876332 112 234
Q ss_pred CCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
+.| |++.|.+|.+++-+ .=.|.+++++ +++.+.+..... .....++...+.+..-|+. +.-+
T Consensus 200 GaD---IVvhSaTKyl~GHsDvl~G~v~~~~-------~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT-----L~~R 264 (396)
T COG0626 200 GAD---IVVHSATKYLGGHSDVLGGVVLTPN-------EELYELLFFAQRANTGAVLSPFDAWLLLRGLRT-----LALR 264 (396)
T ss_pred CCC---EEEEeccccccCCcceeeeEEecCh-------HHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch-----HHHH
Confidence 444 99999999986644 4456555543 455555533322 3446677888877777765 6667
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEE-
Q 014603 319 TDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV- 381 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v- 381 (422)
.++..++...+.+.|++.|.+.-+.+|. .|-.+.+.+.. . +.+..+++.-.+..
T Consensus 265 m~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~--------~-~~~~~f~~~L~l~~~ 335 (396)
T COG0626 265 MERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN--------E-EAAKKFLDSLKLFKL 335 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC--------h-HHHHHHHHhCCccEE
Confidence 7888888999999999988876555663 34455566653 1 22333333333332
Q ss_pred --ecCCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 382 --LPGITV----------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 382 --~~g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
.-|... +. ++.+|+|++. |+++.++..|+++++.
T Consensus 336 a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl--Ed~eDLi~Dl~~Al~~ 394 (396)
T COG0626 336 AESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL--EDVEDLIADLEQALAK 394 (396)
T ss_pred eccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHHh
Confidence 112111 01 5789999997 4666667777777765
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-19 Score=165.64 Aligned_cols=313 Identities=12% Similarity=0.060 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHhhCCC-CCCCCC--CCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEe-cCHHHHHHHHHHHhcCCCCE
Q 014603 62 RTASVAVDAIVHSVRSAR-FNCYSS--TVGILPARRAIADYLNRDLPYKLS-PDDVYLT-LGCTQAIEVILTVLARPGAN 136 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~-~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~-~g~~~a~~~~~~~l~~~gd~ 136 (422)
..++++++++.+....-. .+.+.+ ...+.+.|+.++++++ +. ..+|+|+ +|+|.+++.++.+++.+ +.
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~ 85 (361)
T TIGR01366 13 KVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFS------LPDGYEVILGNGGATAFWDAATFGLIEK-KS 85 (361)
T ss_pred CCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhC------CCCCceEEEECCchhHHHHHHHHhcccc-cc
Confidence 567899999876421100 112222 2346788889999883 33 3478876 66999999999998743 33
Q ss_pred EEecCCCcc-chHHHHhhC--CCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHH
Q 014603 137 ILLPRPGFP-YYEARATHS--HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAK 213 (422)
Q Consensus 137 Vl~~~~~~~-~~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~ 213 (422)
+++....|. .+...+... +.++..++... +..++ ..+.++++++.+++..|.||+..|.++ | ++
T Consensus 86 l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~lV~~~h~et~tG~~~pi~~---I---~~ 152 (361)
T TIGR01366 86 LHLSFGEFSSKFAKAVKLAPWLGEPIIVTADP--GSAPE-----PQADPGVDVIAWAHNETSTGVAVPVRR---P---EG 152 (361)
T ss_pred cEEecCHHHHHHHHHHHhhhccCCceEEecCC--CCCCC-----CccCCCCCEEEEcccCCccceeccccc---c---cc
Confidence 344444442 334444432 22556665432 21222 234668999999999999999976544 4 47
Q ss_pred HcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-----
Q 014603 214 KLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF----- 288 (422)
Q Consensus 214 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----- 288 (422)
++|+++++|.+++. |..+.++.. .| ++++|.+|+++++|- ++.++.+ ++..+++...
T Consensus 153 ~~g~~~iVDavqs~----g~~~idv~~--~D---~~~~s~~K~lg~~~G-l~~~~~s--------~~~~~~~~~~~~~~~ 214 (361)
T TIGR01366 153 SDDALVVIDATSGA----GGLPVDIAE--TD---VYYFAPQKNFASDGG-LWLAIMS--------PAALERIEAIAASGR 214 (361)
T ss_pred cCCCeEEEEcCccc----cCCCCCHHH--CC---EEEEEchhhcCCCCc-eEEEEEC--------HHHHhhhhcccCCCC
Confidence 89999999999987 444445443 22 788999999988741 5555554 2333333210
Q ss_pred -----------------hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---C
Q 014603 289 -----------------LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKKPE---G 347 (422)
Q Consensus 289 -----------------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~ 347 (422)
....++++....+++.++++...+. .++...++.+++.+.+++.|++++.+....... .
T Consensus 215 ~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s 294 (361)
T TIGR01366 215 WVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRS 294 (361)
T ss_pred CCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcc
Confidence 0123455556666777777765544 478888999999999999999986555331111 1
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.....+.++.+ .+..++...+ +++||.+.++...-..+.+|||+. ++.++++++++.|+++++++
T Consensus 295 ~~v~~v~~~~g-----~~~~~v~~~L-~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 295 QVVGTIDFVDD-----IDAATVAKIL-RANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred cceEEEECCCc-----cCHHHHHHHH-HHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 11222334321 2566666666 667999987653222568999997 78999999999999988753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-18 Score=159.99 Aligned_cols=278 Identities=14% Similarity=0.124 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~ 162 (422)
+...++++.++++. ..+..+.+++|++|+.+++.+++++||+|+++.+.|.+.. ..+...|++++.++
T Consensus 64 P~~~~lE~~la~le--------g~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd 135 (384)
T PRK06434 64 PTVQAFEEKYAVLE--------NAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYID 135 (384)
T ss_pred hhHHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEEC
Confidence 44678899999987 3356888999999999999999999999999888765543 55667899998887
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
+++.+.+.++ .++++++++..|.||++.+ .++++|.++|++++ +++|.+++.. +.+ .++. .+
T Consensus 136 ~~~~~~~~l~--------~~~tklv~~e~~snpt~~v---~Di~~I~~la~~~~--lvVD~t~~s~-~~~---~pl~-~g 197 (384)
T PRK06434 136 TDRLNSLDFD--------PSNYDLIYAESITNPTLKV---PDIKNVSSFCHEND--VIVDATFASP-YNQ---NPLD-LG 197 (384)
T ss_pred CCChhheeec--------CCCeeEEEEEcCCCCCcee---ecHHHHHHHHHHcC--eEEECCCCCc-ccC---Cchh-cC
Confidence 6532222221 1268899999999999988 57999999999998 4669997431 111 1222 23
Q ss_pred CCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
.| +++.|.+|.++++| .=.|.+++++ +++.++++... ......+++..+.+..-|+. +..+.+
T Consensus 198 aD---ivv~S~tK~i~G~~d~~gG~vv~~~-------~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t-----L~~R~~ 262 (384)
T PRK06434 198 AD---VVIHSATKYISGHSDVVMGVAGTNN-------KSIFNNLVERRKTLGSNPDPIQAYLALRGLKT-----LGLRME 262 (384)
T ss_pred CC---EEEeecccccCCCCCceEEEEecCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc-----HHHHHH
Confidence 33 88999999987655 3346666543 35656655443 22234455555555555554 677888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC----------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeE---EecCCC-
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPE----------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI---VLPGIT- 386 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~---v~~g~~- 386 (422)
+.+++...+.+.|+.+|.+.-+.+|. .|..+.+.++. .+.+.+++++-.+. +.-|..
T Consensus 263 r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~---------~~~~~~f~~~l~l~~~~~slG~~~ 333 (384)
T PRK06434 263 KHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS---------MEDVHKFIRNLEIPMVAASLGGVE 333 (384)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC---------HHHHHHHHHhCCcceEccCCCCCC
Confidence 88999999999999998875455554 23445555642 12223333333332 111110
Q ss_pred ---------------------CCC-CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 387 ---------------------VGL-KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 387 ---------------------~~~-~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
.+. ++.||+|++. |+.+.+++.|.+++.
T Consensus 334 sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl--Ed~~dLi~dl~~Al~ 383 (384)
T PRK06434 334 SLITLPVETSHSSLSPEERERLGISDNLVRFSIGI--EDIDDLIKDIENALS 383 (384)
T ss_pred eeeECCCccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHhc
Confidence 001 4689999997 467777778777764
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-17 Score=154.94 Aligned_cols=335 Identities=16% Similarity=0.142 Sum_probs=215.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHH-HHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDA-IVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a-~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
.-+|||=+...+ +.+.++ +......+ ..|...+...+|++.+++++ ..+.++++++|+.|+
T Consensus 38 ~v~iDLltDsgT--------~aMs~~q~a~~~~GD--e~yag~~s~~~lE~~va~~~--------G~~~av~v~sGT~Al 99 (450)
T TIGR02618 38 DVYIDLLTDSGT--------NAMSDKQWAGLMMGD--EAYAGSRNFYHLERTVRELY--------GFKYVVPTHQGRGAE 99 (450)
T ss_pred ceEEEcccCCCc--------HHHHHHHHHHhhhcc--hhhcCCCcHHHHHHHHHHHH--------CCCeEEEcCCHHHHH
Confidence 335676554422 566666 55544333 25887788899999999999 446899999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHH-HHhhCCCeEEEeecc--------CCCCcccCHHHHHHhhcC----CceEEEEe
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEA-RATHSHLEVRHFDLL--------PAKGWEVDLDAVEALADE----NTVALVII 190 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~~~~~--------~~~~~~~d~~~l~~~~~~----~~~~i~i~ 190 (422)
+++....++|||.| +.+.|..... .....|..++.++.+ ....+.+|++.+++.+++ +++.+.+.
T Consensus 100 ~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e 177 (450)
T TIGR02618 100 NLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLA 177 (450)
T ss_pred HHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEE
Confidence 98877778999977 6677744433 356777755555333 123467899999998875 33467778
Q ss_pred CCCCC-cccccCHHHHHHHHHHHHHcCcEEEEcccccccc--c-----CCCCCCCc----cccCCCCCeEEEecCccccC
Q 014603 191 NPGNP-CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA--F-----GNTPFVPM----GVFGSIVPVLTLGSISKRWI 258 (422)
Q Consensus 191 ~p~np-tG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~--~-----~~~~~~~~----~~~~~~~~~i~i~s~sK~~~ 258 (422)
+++|. .|..+|.++++++.++|++||+.||.|.++.... + .|....++ ..+.... ..++.|..|.++
T Consensus 178 ~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~a-D~~~~S~~Kd~~ 256 (450)
T TIGR02618 178 VTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYA-DGCTMSGKKDCL 256 (450)
T ss_pred EecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccC-cEEEEeeccCCC
Confidence 88774 5899999999999999999999999999986511 1 01111122 1111011 157889999976
Q ss_pred CC-CceeEEEEeeCCCCcccchhHHHHHHhhhhhc-c-----CcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 014603 259 VP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-S-----DPATFIQGAVPQILEKTE-EEFFSKITDILRETADICC 330 (422)
Q Consensus 259 ~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 330 (422)
.+ | |++++++ +++.++++...-.. + ..+.-.+.++...|++.. +.+..+ .....++|.
T Consensus 257 ~~~G---G~l~~~d-------~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~----r~~~a~~La 322 (450)
T TIGR02618 257 VNIG---GFLCMND-------DEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEH----RVKQVRYLG 322 (450)
T ss_pred CCCc---eEEEeCC-------HHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHH----HHHHHHHHH
Confidence 66 5 7777665 57888877764221 1 112223344444554422 222222 333466777
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCc----ccccCCCCHHHHHHHHHHhcCeEEec-CCCC-CC-----------CCeE
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNY----SLLEGINSDMEFALKLAKEESVIVLP-GITV-GL-----------KDWL 393 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~~-~~-----------~~~i 393 (422)
+.|.+. |+.+ ..|.+|..+++.... -..... ....+..+|-.+.||--.- |+.. +. -..+
T Consensus 323 ~~L~~~-Gvpv-~~p~ggh~V~vda~~~lph~~~~~~-p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~ 399 (450)
T TIGR02618 323 DKLKAA-GVPI-VEPVGGHAVFLDARRFLPHIPQDQF-PAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELV 399 (450)
T ss_pred HHHHHC-CCcc-cCCCCcceEEEEhHHhCCCCChhhC-hHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCcccee
Confidence 777777 8874 478888888876432 111111 3556666666677875432 2221 11 1579
Q ss_pred EEEec---cChHHHHHHHHHHHHHHHH
Q 014603 394 RITFA---VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 394 Ris~~---~~~~~l~~~~~~l~~~~~~ 417 (422)
|+++. .+.+.++...++|..+.++
T Consensus 400 rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 400 RLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred eeccccccccHhHHHHHHHHHHHHHhh
Confidence 99997 4789999999999887754
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-18 Score=161.52 Aligned_cols=346 Identities=17% Similarity=0.153 Sum_probs=199.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHH--HHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVD--AIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~--a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|+.++||..|......+ ..+|.+.+ ++.+++.+-............+....+++.+.+..+ +...+.++|++||+
T Consensus 43 dG~~ylD~~~g~~~~~lG-h~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~-p~~~~~v~f~~SGs 120 (443)
T PRK08297 43 TGRRYLDMFTFFASSALG-MNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG-DPELPHLFFVDGGA 120 (443)
T ss_pred CCCEeeecccCHhhhcCC-CCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC-CCCCCEEEEeCchH
Confidence 688999998886553233 45789999 999998652110000000111233334444433221 11346899999999
Q ss_pred HHHHHHHHHhc----------C---C-CCEEEecCCCccchHHHHhhCCC-eEE---Eeec-----c--CCC-----Ccc
Q 014603 121 QAIEVILTVLA----------R---P-GANILLPRPGFPYYEARATHSHL-EVR---HFDL-----L--PAK-----GWE 170 (422)
Q Consensus 121 ~a~~~~~~~l~----------~---~-gd~Vl~~~~~~~~~~~~~~~~g~-~~~---~~~~-----~--~~~-----~~~ 170 (422)
+|++.+++... . + ..+|+....+||+....+..... ... ..+. . +.. ...
T Consensus 121 EAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (443)
T PRK08297 121 LAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGED 200 (443)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccc
Confidence 99999988652 1 1 25799999999987655443321 100 0010 0 000 000
Q ss_pred ---c------CHHHHHHhhc--CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC
Q 014603 171 ---V------DLDAVEALAD--ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 171 ---~------d~~~l~~~~~--~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
. +++.+++.+. ++..+.++..| +...|. .+|++.+++|.++|++||+++|.||++.++.++|... .
T Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a 279 (443)
T PRK08297 201 LEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAW-A 279 (443)
T ss_pred cchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHH-H
Confidence 0 2344455553 24456667777 444565 4788899999999999999999999999887776432 1
Q ss_pred ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH------hhhhhccCcchHHHHHHHHHHhhch
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK------SFLNISSDPATFIQGAVPQILEKTE 311 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~ 311 (422)
...++..++++ +++|.++ +|.++..+ ++.+.+. .....+.+.++++++++.+.|+...
T Consensus 280 ~~~~gv~PDiv---~~gK~l~-----~~a~l~~~--------~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~ 343 (443)
T PRK08297 280 YQQLGVRPDIV---AFGKKTQ-----VCGIMAGR--------RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIE 343 (443)
T ss_pred HHhcCCCCCEE---Eeccccc-----ccceecch--------HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHH
Confidence 22233333334 3579852 23333321 2222111 1122345678899999998888643
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC
Q 014603 312 E-EFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 390 (422)
Q Consensus 312 ~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 390 (422)
+ ..+++..+.-+..++.+.+..++.|.+... ....|.++.+.++... ....+...+ .++||++.|+. .
T Consensus 344 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~-vrg~G~~~~i~~~~~~-----~~~~~~~~l-~~~Gvl~~~~~----~ 412 (443)
T PRK08297 344 EDGLVENAARQGEYLLARLEELAAEFPAVVSN-VRGRGLMCAFDLPTTA-----DRDEVIRRL-WEEGVLVLPCG----E 412 (443)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHCCCccee-eeccceEEEEEecCHH-----HHHHHHHHH-HHCCEEEecCC----C
Confidence 2 223333333333333333333334433201 2234677777775320 133455555 46799998753 3
Q ss_pred CeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 391 DWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 391 ~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.+|++++ ++++++++++++|.++++++
T Consensus 413 ~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 413 RSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 56899766 78999999999999998764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=154.53 Aligned_cols=349 Identities=15% Similarity=0.168 Sum_probs=225.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.++.++|||..+.....++ +..|++.+++.++.... ..+.|-... ..++.+.+.+.+.+ -.++.|+|+++|
T Consensus 53 ~~g~EyiD~~ssw~~~~~G-hanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~-----~~~~rvff~nsG 125 (433)
T KOG1401|consen 53 PDGKEYIDFTSSWAVTILG-HANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGK-----GSAERVFFCNSG 125 (433)
T ss_pred CCcceeeeeccceeccccC-CCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccC-----CCccEEEEecCC
Confidence 4689999999998665555 45899999999998763 223333322 34556666665543 277899999999
Q ss_pred HHHHHHHHHHhcC------CC--CEEEecCCCccchHHHHhh-CCCeEEEeeccCCC-C----cccCHHHHHHhhcCCc-
Q 014603 120 TQAIEVILTVLAR------PG--ANILLPRPGFPYYEARATH-SHLEVRHFDLLPAK-G----WEVDLDAVEALADENT- 184 (422)
Q Consensus 120 ~~a~~~~~~~l~~------~g--d~Vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~----~~~d~~~l~~~~~~~~- 184 (422)
|+|++.++....+ +- ..++....+||+-...+.. .+...+..|.+|.- + .--|...+++.++.+.
T Consensus 126 TeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~ 205 (433)
T KOG1401|consen 126 TEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKG 205 (433)
T ss_pred cHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCC
Confidence 9999999876432 11 2499999999876444332 23222333322210 0 1126788888886544
Q ss_pred -eEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC
Q 014603 185 -VALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG 261 (422)
Q Consensus 185 -~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G 261 (422)
.+.+|..| +...|.+ ..++.+..|.++|+++|+++|.||++.++.+.|... ..+.+...++ +.++.|. ...|
T Consensus 206 ~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~-a~e~~~~~PD---I~t~aK~-L~gG 280 (433)
T KOG1401|consen 206 EIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW-AQEYFGVTPD---ITTVAKP-LGGG 280 (433)
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH-HHHHhCcCCc---ceeehhh-ccCC
Confidence 56667777 5566664 577889999999999999999999999987776431 2222333333 4455799 4678
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhhh----hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 262 WRLGWLVTSDPNGILQDSGIVDSIKSFL----NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 262 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
+++|+.++++ ++.+.+.... ..+++.+++.+.++...|+... .++++++.+.-+..++.+.+.+.+-
T Consensus 281 lPigA~~v~~--------kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~ 352 (433)
T KOG1401|consen 281 LPIGATGVRD--------KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKT 352 (433)
T ss_pred ceeEEEeehH--------HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999863 6777775433 3456888999999999998744 6778888888888899999888876
Q ss_pred CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe------ccChHHHHHHHHH
Q 014603 337 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF------AVEPSALEDGLGR 410 (422)
Q Consensus 337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~------~~~~~~l~~~~~~ 410 (422)
+...+- ....++++.+.+..+..+.. +.. .+.+.++.++........+|+.+ .+++|.+++++++
T Consensus 353 ~~~i~g-~~grgl~ig~~~~~p~~~~~-d~~-------~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i 423 (433)
T KOG1401|consen 353 PNSICG-GVGRGLVIGFEFEGPVYKFA-DAA-------REQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTI 423 (433)
T ss_pred CCceee-eeeeEEEEEEEEeechhhhh-hhh-------hhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHH
Confidence 443312 24446666655543211111 111 11122222211111123344443 2458999999999
Q ss_pred HHHHHHHhc
Q 014603 411 MKAFYDRHA 419 (422)
Q Consensus 411 l~~~~~~~~ 419 (422)
+.+.+.++.
T Consensus 424 ~~~~l~~~~ 432 (433)
T KOG1401|consen 424 LEKVLSALN 432 (433)
T ss_pred HHHHHHHhc
Confidence 999988764
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=160.40 Aligned_cols=285 Identities=13% Similarity=0.149 Sum_probs=187.2
Q ss_pred CCEEEecCHH-HHHHHHHHHhcC---CCCEEEecCCCccchHHHHhhCCCeEEEeec-cCCCCcccCHHHHHHhhcC---
Q 014603 111 DDVYLTLGCT-QAIEVILTVLAR---PGANILLPRPGFPYYEARATHSHLEVRHFDL-LPAKGWEVDLDAVEALADE--- 182 (422)
Q Consensus 111 ~~i~~~~g~~-~a~~~~~~~l~~---~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~~~~--- 182 (422)
+..++++|+| .++.+++.++.. +||.|+++...|.+....+...|++++.++. .+++.+.+|++.|++++++
T Consensus 124 ~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~ 203 (444)
T TIGR03531 124 KSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGP 203 (444)
T ss_pred CEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccC
Confidence 4688899999 588877777652 5899999999999999999999999999985 2345688999999999875
Q ss_pred CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCc--cccCCCCC-eEEEecCccccCC
Q 014603 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM--GVFGSIVP-VLTLGSISKRWIV 259 (422)
Q Consensus 183 ~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~--~~~~~~~~-~i~i~s~sK~~~~ 259 (422)
+.+++++.+|+ ++.....+++++|.++|++||+++|+|++|+..... ...+ ..... ++ .+++.|++|.+.+
T Consensus 204 kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~---~~~~~~~g~~~-Grad~vv~s~hK~l~~ 277 (444)
T TIGR03531 204 DNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNK---YMELINKAIKV-GRVDAVVSSTDKNFMV 277 (444)
T ss_pred CCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChh---hhhhhhccccc-cCCCeEEEeCccCCCC
Confidence 45666666665 333334489999999999999999999999852211 0011 11110 11 3668899999887
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP-- 337 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-- 337 (422)
+|. .|.+++++ +++.+++...... ...+...+.+...++.. ..+++++..++..++++.+.+.|+++.
T Consensus 278 pg~-Gg~I~~~d-------~el~~~i~~~y~g-~~~~s~~~~~~~~ll~~-G~~g~~~li~~~~~~a~~l~~~L~~l~~~ 347 (444)
T TIGR03531 278 PVG-GAIIYSFD-------ENFIQEISKSYPG-RASASPSLDVLITLLSL-GSKGYLELLKERKEMYKYLKELLQKLAER 347 (444)
T ss_pred CCC-EEEEEECC-------HHHHHHHHHhccC-CCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 775 34444544 5677776654321 22334566666656643 457888889999999999999888652
Q ss_pred -CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCe----EEecCC-------CC---CC------CCeEEEE
Q 014603 338 -CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV----IVLPGI-------TV---GL------KDWLRIT 396 (422)
Q Consensus 338 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi----~v~~g~-------~~---~~------~~~iRis 396 (422)
+..+...|.+...+-+.+.... ..+...+-.. |-..+| .|.||. .| +. ..++-++
T Consensus 348 ~~~~~~~~~~n~is~~~~~~~~~---~~~~~~~g~~-l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 423 (444)
T TIGR03531 348 HGERLLDTPENPISSAMTLSTLK---GKDPTMLGSM-LYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAA 423 (444)
T ss_pred hCcEeecCCCCceeEEEeccccc---ccCHHHHHHH-HHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHH
Confidence 3343445565555555554221 0133444333 333455 244555 12 11 1233333
Q ss_pred e--ccChHHHHHHHHHHHHHH
Q 014603 397 F--AVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 397 ~--~~~~~~l~~~~~~l~~~~ 415 (422)
. +++++|++.++++|++++
T Consensus 424 ~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 424 AAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred HHhCCcHHHHHHHHHHHhhcC
Confidence 3 378999999999998753
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-18 Score=161.10 Aligned_cols=346 Identities=13% Similarity=0.060 Sum_probs=205.6
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCC------CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE---
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCY------SSTVGILPARRAIADYLNRDLPYKLSPDDVYL--- 115 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y------~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--- 115 (422)
...|+|--.. | ..++.+++++...+.+....+| +-...+.++++...+...+.++ ...+.+.+
T Consensus 34 ~~~l~liase-----n-~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv~ 105 (475)
T PLN03226 34 WKGLELIASE-----N-FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNVQ 105 (475)
T ss_pred HcCeeEecCC-----c-cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEecC
Confidence 5557764433 2 3568899999888844222222 2223455666533333333332 23333333
Q ss_pred ecCHHHHHHHHHHHhcCCCCEEEecCC---Cccch---HHHHhhCCCeEE----EeeccCCCCcccCHHHHHHhhcC-Cc
Q 014603 116 TLGCTQAIEVILTVLARPGANILLPRP---GFPYY---EARATHSHLEVR----HFDLLPAKGWEVDLDAVEALADE-NT 184 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~gd~Vl~~~~---~~~~~---~~~~~~~g~~~~----~~~~~~~~~~~~d~~~l~~~~~~-~~ 184 (422)
..+|+.|+..++.++++|||+|+..+. +|... ....+..+.... .+.+++ +++.+|+++|++.+.+ ++
T Consensus 106 ~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~~p 184 (475)
T PLN03226 106 PLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLFRP 184 (475)
T ss_pred cCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhcCC
Confidence 378899999999999999999998553 33221 111111222221 334443 3457899999998764 56
Q ss_pred eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC-CCccccCCCCCeEEEecCcccc-CCCCc
Q 014603 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF-VPMGVFGSIVPVLTLGSISKRW-IVPGW 262 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~s~sK~~-~~~G~ 262 (422)
+.++ +..++ +|.. .++++|.++|+++|+++++|++|.......... .++. .. .++++|++|++ |..|
T Consensus 185 klIv-~~~S~-~s~~---~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~--~~---Div~~t~hK~L~GP~G- 253 (475)
T PLN03226 185 KLII-AGASA-YPRD---WDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE--YC---DVVTTTTHKSLRGPRG- 253 (475)
T ss_pred eEEE-EecCc-CCCc---cCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC--CC---eEEEecCcccccCCCc-
Confidence 6554 43333 5665 467788899999999999999998644322211 1221 12 28889999997 3344
Q ss_pred eeEEEEeeCCCCcc------cchhHHHHHHhhh--hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 263 RLGWLVTSDPNGIL------QDSGIVDSIKSFL--NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 263 r~G~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
|++++++..... ...++...+.... .+.+++++...+++..+++.......++..+++.++.+.+.+.|+
T Consensus 254 --g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~ 331 (475)
T PLN03226 254 --GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLM 331 (475)
T ss_pred --eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 888875311000 0001221222111 133456666666777777764444567778999999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-----CCCeEEEEec------cChHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRITFA------VEPSA 403 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~------~~~~~ 403 (422)
+. |+.++.........++.+... + .+..+. ...+++.||.+..+.-++ ....+|++.. .++++
T Consensus 332 ~~-G~~l~~~~t~~hi~lv~~~~~---g-i~~~~~-~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d 405 (475)
T PLN03226 332 SK-GYKLVTGGTDNHLVLWDLRPL---G-LTGSRV-EKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKD 405 (475)
T ss_pred hC-CCEEEcCCCCCCEEEEEccCC---C-CCHHHH-HHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHH
Confidence 85 777442222244566666321 1 134444 445577899998765222 1466898653 56789
Q ss_pred HHHHHHHHHHHHHHh
Q 014603 404 LEDGLGRMKAFYDRH 418 (422)
Q Consensus 404 l~~~~~~l~~~~~~~ 418 (422)
++++.+.|.++++.+
T Consensus 406 ~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 406 FEKVAEFLHRAVTIA 420 (475)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998743
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-17 Score=138.66 Aligned_cols=323 Identities=13% Similarity=0.134 Sum_probs=214.8
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCC--------CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYS--------STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP 133 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~--------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~ 133 (422)
-.+++.++|+.+.-+..+...|- ..+.+.++.+.+++|+ .-|.+-+|.|+.++-++++.+++++
T Consensus 28 iLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFl--------g~D~~R~t~GARe~KfavMhal~~~ 99 (382)
T COG1103 28 ILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFL--------GMDEVRVTAGAREAKFAVMHALCKE 99 (382)
T ss_pred cCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHh--------CCceeeecccchhhHHHHHHHhccC
Confidence 34678888888876542221111 1123567778899999 4578899999999999999999999
Q ss_pred CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh----cC---CceEEEEeCCCCCcccccCHHHHH
Q 014603 134 GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA----DE---NTVALVIINPGNPCGNVYTYQHLQ 206 (422)
Q Consensus 134 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~----~~---~~~~i~i~~p~nptG~~~~~~~l~ 206 (422)
||.|++...+|+....+++..|.++..+|......+.+++|...+.+ ++ .+.+++++++....|.. .|.+
T Consensus 100 gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---~Dak 176 (382)
T COG1103 100 GDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---ADAK 176 (382)
T ss_pred CCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---hhhH
Confidence 99999999999998999999999999999665566888888765544 22 35677899998888888 7899
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH
Q 014603 207 KIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286 (422)
Q Consensus 207 ~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 286 (422)
+++++|+++|+.++...+|.. |..+.+...++.| ++++|-+|++ .+.-++|.+.++ .++.+..-
T Consensus 177 kva~ic~e~gvPlllN~AYt~----Grmpvs~ke~g~D---FiVgSGHKsm-AAs~PiGvl~~~--------eE~ae~V~ 240 (382)
T COG1103 177 KVAKICREYGVPLLLNCAYTV----GRMPVSGKEIGAD---FIVGSGHKSM-AASAPIGVLAMS--------EEWAEIVL 240 (382)
T ss_pred HHHHHHHHcCCceEeecceee----ccccccccccCCC---EEEecCccch-hccCCeeEEeeh--------hHHHHHHH
Confidence 999999999999999999987 5556666677766 9999999995 555679999885 35555443
Q ss_pred hhhh---------hccCcc-hHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCceEEEEec
Q 014603 287 SFLN---------ISSDPA-TFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP-KKPEGSMFVMVKL 355 (422)
Q Consensus 287 ~~~~---------~~~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~ 355 (422)
+... ..++.+ ......+.+.+-. -.+.+.++.+. -+..+.+.+.|+++.|+... ..|..--.+.+..
T Consensus 241 r~Sg~~~~~KEvellGCT~rGapivTlmASfP~-V~eRVkrWdeE-v~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fet 318 (382)
T COG1103 241 RRSGRAFPKKEVELLGCTVRGAPIVTLMASFPH-VVERVKRWDEE-VEKARWFVAELEKIGGVKQLGERPKNHDLMKFET 318 (382)
T ss_pred hhcccccccceeeeecccccCchHHHHHhcCHH-HHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHhCCCCcccceeeecC
Confidence 3221 111111 1111111111111 01222222222 34566778888888666522 2344333333333
Q ss_pred Cccc--c-cCCCCHHHHHHHHHHhcCeE-EecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 356 NYSL--L-EGINSDMEFALKLAKEESVI-VLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 356 ~~~~--~-~~~~~~~~~~~~l~~~~gi~-v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
|... . +......-+.++| +++||. |.|| ...++.+|.- .+.|+++..+++++++++++
T Consensus 319 p~f~eIakk~~r~gyFlY~EL-K~RgI~GI~~G----~Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 319 PVFHEIAKKHKRKGYFLYEEL-KKRGIHGIQPG----QTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred chHHHHHHhCcCCceeeHHHH-HhcCccccccC----ceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 3210 0 0000111233444 555665 4444 3578999975 89999999999999999876
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-17 Score=156.18 Aligned_cols=340 Identities=11% Similarity=0.059 Sum_probs=215.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-----CCCEEEecCHHHHHHHHHHHhcC--------
Q 014603 66 VAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-----PDDVYLTLGCTQAIEVILTVLAR-------- 132 (422)
Q Consensus 66 ~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~~~g~~~a~~~~~~~l~~-------- 132 (422)
-+-+.+...+.. ....|...+...++++.+.+|+.+.+|.+-. ...=++++|+|+|+..++.+...
T Consensus 146 ~lgd~l~sa~n~-~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~ 224 (539)
T PLN02590 146 FLGEMLNAGLSV-VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGK 224 (539)
T ss_pred HHHHHHHHhccc-ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcc
Confidence 334444444433 2234555566789999999999998875532 13456788999888776654321
Q ss_pred ---CCCEEEecCCCccchHHHHhhCCC---eEEEeeccCCCCcccCHHHHHHhhcCC------ceEEEEeCCCCCccccc
Q 014603 133 ---PGANILLPRPGFPYYEARATHSHL---EVRHFDLLPAKGWEVDLDAVEALADEN------TVALVIINPGNPCGNVY 200 (422)
Q Consensus 133 ---~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~nptG~~~ 200 (422)
+.-.|++.+..|+++..++...|+ .++.+|.+..+++.+|++.|++.+.+. +-+|+.+-.+..+|.+
T Consensus 225 ~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai- 303 (539)
T PLN02590 225 TLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV- 303 (539)
T ss_pred cCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc-
Confidence 112566678899999999999998 478888765456789999999988542 3445555668889999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFG-NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
+++++|.++|++||+++++|.+|++...- .....-+..++..+ -+..+++|+ +.....+|.++++++.
T Consensus 304 --Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~AD--Sit~D~HK~-l~~p~~cg~llvr~~~------ 372 (539)
T PLN02590 304 --DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENAD--SFNMNAHKW-LFANQTCSPLWVKDRY------ 372 (539)
T ss_pred --CCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCC--EEEECchhh-cCcCcCEEEEEecCHH------
Confidence 88999999999999999999999875421 11111112222111 455689999 5666779999987642
Q ss_pred hHHHHHHh---hh--------------hhccCc-chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014603 280 GIVDSIKS---FL--------------NISSDP-ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITC 341 (422)
Q Consensus 280 ~~~~~~~~---~~--------------~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 341 (422)
.+...+.. +. ..+... -.+....+-..|+....+.+.+..++.-++.+++.+.|++.|++++
T Consensus 373 ~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel 452 (539)
T PLN02590 373 SLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEV 452 (539)
T ss_pred HHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 12222211 00 000011 1122222223344444678889999999999999999999999986
Q ss_pred CCCCCCceEEEEecCcccccC---CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHHHHHHHHH
Q 014603 342 PKKPEGSMFVMVKLNYSLLEG---INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 342 ~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~ 415 (422)
+..|.-+. +.+++....... ..-..++.+++.+...+++.+ ......-++|++++ +++++++.+++.|.+..
T Consensus 453 ~~~~~l~i-VcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~-t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a 530 (539)
T PLN02590 453 VTTRYFSL-VCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISH-TALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHA 530 (539)
T ss_pred ecCCceEE-EEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEe-eEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 65555443 334443211000 001234455554444444544 33333568999997 67899999999999988
Q ss_pred HHhcc
Q 014603 416 DRHAK 420 (422)
Q Consensus 416 ~~~~~ 420 (422)
+++.+
T Consensus 531 ~~~~~ 535 (539)
T PLN02590 531 SKFTR 535 (539)
T ss_pred HHhcc
Confidence 77644
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-17 Score=158.29 Aligned_cols=339 Identities=10% Similarity=0.014 Sum_probs=212.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-----CCCEEEecCHHHHHHHHHHHhcC--------
Q 014603 66 VAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-----PDDVYLTLGCTQAIEVILTVLAR-------- 132 (422)
Q Consensus 66 ~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~~~g~~~a~~~~~~~l~~-------- 132 (422)
.+-+.+...++. ....|...+...++++.+.+|+.+.+|.+-. ...-++|+|||+|+..++.+...
T Consensus 98 ~lad~l~~~~n~-~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~ 176 (490)
T PLN02880 98 FLGEMLSAGLNI-VGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK 176 (490)
T ss_pred HHHHHHHHhhcc-CCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444433 2224444456789999999999987775532 12467789999988776654321
Q ss_pred ---CCCEEEecCCCccchHHHHhhCCCe---EEEeeccCCCCcccCHHHHHHhhcCC------ceEEEEeCCCCCccccc
Q 014603 133 ---PGANILLPRPGFPYYEARATHSHLE---VRHFDLLPAKGWEVDLDAVEALADEN------TVALVIINPGNPCGNVY 200 (422)
Q Consensus 133 ---~gd~Vl~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~nptG~~~ 200 (422)
+.-.|++++..|+++..++...|++ ++.+|.+..+++.+|++.|++.+.+. +-+++.+-.+..+|.+
T Consensus 177 ~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Gai- 255 (490)
T PLN02880 177 NALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV- 255 (490)
T ss_pred cccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCccc-
Confidence 1125667888999999999999985 67888765556789999999887531 3445555668899999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFG-NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
+++++|+++|+++|+++++|.+|++...- ......+..+... ..+..+++|++ .....+|+++++++.
T Consensus 256 --Dpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~a--DSit~d~HKwl-~~P~~~g~llvr~~~------ 324 (490)
T PLN02880 256 --DPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEA--DSFNMNAHKWF-LTNFDCSLLWVKDRN------ 324 (490)
T ss_pred --CcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhc--CEEEECchhhc-CCCccEEEEEEeCHH------
Confidence 78999999999999999999999875321 1100012222111 26677999994 666779999987521
Q ss_pred hHHHHHHhhhhh-c-------c----------CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014603 280 GIVDSIKSFLNI-S-------S----------DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITC 341 (422)
Q Consensus 280 ~~~~~~~~~~~~-~-------~----------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 341 (422)
.+...+.....+ . . ....+....+-..|+....+.+.++.++..++++++.+.|++.+++++
T Consensus 325 ~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el 404 (490)
T PLN02880 325 ALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEV 404 (490)
T ss_pred HHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 222222111110 0 0 000011111111244334566777777777999999999999888886
Q ss_pred CCCCCCceEEEEecCcccccCC---CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHHHHHHHHH
Q 014603 342 PKKPEGSMFVMVKLNYSLLEGI---NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 342 ~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~ 415 (422)
+..|..+ .+.++++....... .-..++.+++.++..+.+.+.. +....++|+++. +++++++.+++.|.+..
T Consensus 405 ~~~~~~~-iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~-~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~ 482 (490)
T PLN02880 405 VTPRIFS-LVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV-LSGKYVLRFAVGAPLTEERHVTAAWKVLQDEA 482 (490)
T ss_pred ecCCceE-EEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE-ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 6445544 44455542110000 0013455555555666665533 333678999997 56799999999999988
Q ss_pred HHhc
Q 014603 416 DRHA 419 (422)
Q Consensus 416 ~~~~ 419 (422)
+++.
T Consensus 483 ~~~~ 486 (490)
T PLN02880 483 SKLL 486 (490)
T ss_pred HHHH
Confidence 7764
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-17 Score=157.76 Aligned_cols=344 Identities=16% Similarity=0.141 Sum_probs=195.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHH--HHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAV--DAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~--~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|+.+|||..|......+ ..+|.+. +++.+++.+.............+....+++.|.+..+ +-..+.++++++|+
T Consensus 36 dG~~ylD~~~g~~~~~lG-h~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~v~f~~sGs 113 (431)
T TIGR03251 36 DGRRYLDMFSFFASMALG-MNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLG-DPALPHLFFIEGGA 113 (431)
T ss_pred CCCChhhcccChhhcCCC-CCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcC-CCCcCEEEEeCCcH
Confidence 689999998887554333 4578888 8999988753211111111112222334433333211 11346899999999
Q ss_pred HHHHHHHHHhc----------C----CCCEEEecCCCccchHHHHhhC-CCe-EE--Eeec-------cCCC--Cc----
Q 014603 121 QAIEVILTVLA----------R----PGANILLPRPGFPYYEARATHS-HLE-VR--HFDL-------LPAK--GW---- 169 (422)
Q Consensus 121 ~a~~~~~~~l~----------~----~gd~Vl~~~~~~~~~~~~~~~~-g~~-~~--~~~~-------~~~~--~~---- 169 (422)
+|++.+++... . .+.+|+....+||+....+... +.. .. ..+. .+.. ++
T Consensus 114 EAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 193 (431)
T TIGR03251 114 LAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPN 193 (431)
T ss_pred HHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccc
Confidence 99999987652 1 1368999999999875544432 211 00 0110 0000 00
Q ss_pred -c-------cCHHHHHHhhc--CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC
Q 014603 170 -E-------VDLDAVEALAD--ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 170 -~-------~d~~~l~~~~~--~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
. -+++.+++.+. .+..+.++..| +...|.. +|++.+++|.++|++||+++|+||+++++.++|... .
T Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-a 272 (431)
T TIGR03251 194 LDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAW-A 272 (431)
T ss_pred cchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHH-H
Confidence 0 12334444553 23455556666 5556754 678899999999999999999999999887766432 2
Q ss_pred ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH-HH--hhhhhccCcchHHHHHHHHHHhhchH-H
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS-IK--SFLNISSDPATFIQGAVPQILEKTEE-E 313 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~a~~~~l~~~~~-~ 313 (422)
...++..+++++ ++|.+ +. .|++.... + .++... +. .....+.+.++++.+++.++|+...+ .
T Consensus 273 ~~~~gv~PDi~~---~gK~~--~~--~g~~~~~~---i---~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~ 339 (431)
T TIGR03251 273 YQQLGVQPDIVA---FGKKT--QV--CGIMAGRR---V---DEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEER 339 (431)
T ss_pred HHhcCCCCCEEE---ecccC--cc--ceEEecch---H---HHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 222333333343 57874 22 25554321 0 011111 11 01223446788889998888886433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeE
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL 393 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 393 (422)
.+++..+.-+..++.+.+..++.+++... ....|.++.+.++... ....+...+ .++||++.|.. .+.+
T Consensus 340 l~~~~~~~g~~l~~~L~~l~~~~~~~i~~-vrg~G~~~~i~~~~~~-----~~~~~~~~l-~~~Gvl~~~~g----~~~l 408 (431)
T TIGR03251 340 LVDNARVQGAHLLARLHELAAEFPHLVSN-PRGRGLMCAFDLPSTA-----DRDEVIRQL-YREGVLLLGCG----ERSI 408 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccceec-ccccceeEEEEeCCHH-----HHHHHHHHH-HhCCeEEecCC----CCeE
Confidence 23444444444444554433445423212 2233667777775320 123455555 56799998743 3568
Q ss_pred EEEec--cChHHHHHHHHHHHH
Q 014603 394 RITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 394 Ris~~--~~~~~l~~~~~~l~~ 413 (422)
|++++ ++++++++++++|.+
T Consensus 409 r~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 409 RFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred EEECCccCCHHHHHHHHHHHHh
Confidence 98887 789999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-17 Score=149.33 Aligned_cols=307 Identities=17% Similarity=0.081 Sum_probs=198.5
Q ss_pred HHHHHHHHHhhCCCCCCCCC---CCCCHHHHHHHHHHHhhcCCCCCCCCCE--EEecCHHHHHHHHHHHhc--CCCCEEE
Q 014603 66 VAVDAIVHSVRSARFNCYSS---TVGILPARRAIADYLNRDLPYKLSPDDV--YLTLGCTQAIEVILTVLA--RPGANIL 138 (422)
Q Consensus 66 ~v~~a~~~~~~~~~~~~y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~--~~gd~Vl 138 (422)
...+++.+...+...+.+.. .....++++.+.+++.+.+| .+++++ +||+|||+|+..++.+.. .++..|+
T Consensus 38 ~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi 115 (374)
T PLN03032 38 GELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILY 115 (374)
T ss_pred HHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEE
Confidence 45677777665422221111 11234555555555554443 456666 999999999998887653 2456899
Q ss_pred ecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
++.-.|++....++.++.+++.+|.++ ++.+|++.|++.+++ ++.+++++..+|++|.+ +++++|+++|+++
T Consensus 116 ~s~~~H~Sv~kaa~~lg~~~~~V~~d~--~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~i---dpi~eI~~i~~~~ 190 (374)
T PLN03032 116 ASRESHYSVFKAARMYRMEAVKVPTLP--SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAV---DDLDRILRILKEL 190 (374)
T ss_pred eCCCceeHHHHHHHHcCCCCeEeeeCC--CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccC---CCHHHHHHHHHHh
Confidence 999999999999999999988888754 456999999999876 46677788889999999 7788899999999
Q ss_pred C-----cEEEEccccccccc--CCC-CCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh
Q 014603 216 G-----IMVIADEVYDHLAF--GNT-PFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS 287 (422)
Q Consensus 216 ~-----~~li~D~~~~~~~~--~~~-~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
| +++++|.++++... ... +..++. ... ..+..|.+|.++ ....+|+++.++ +..+.+..
T Consensus 191 g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~v---DSis~s~HK~~g-~P~g~G~ll~r~--------~~~~~~~~ 257 (374)
T PLN03032 191 GYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPI---GSVSVSGHKFLG-CPMPCGVALTRK--------KHVKALSQ 257 (374)
T ss_pred CCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCC---cEEEECcccccC-CCcCeEEEEEEc--------hhhHhhcc
Confidence 6 58999999976321 110 011111 111 256679999954 234589998874 23333321
Q ss_pred hhh--------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc
Q 014603 288 FLN--------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL 359 (422)
Q Consensus 288 ~~~--------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~ 359 (422)
... ..++-+......+-..|.....+.+.+..++..++.+++.+.|++. ++.++..|... .+.++-+.
T Consensus 258 ~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~-~V~f~~~~-- 333 (374)
T PLN03032 258 NVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSS-TVVFERPM-- 333 (374)
T ss_pred CCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCce-EEEEcCCC--
Confidence 111 1112122233333344555556788889999999999999999987 66655566533 33333331
Q ss_pred ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 360 LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
.. .+. +|..+.+- ++.+|+++. ++.+.++++++.|++
T Consensus 334 ------~~----~~~--~~w~l~~~-----~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 334 ------DE----AFI--KKWQLACE-----GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred ------cH----hHh--heeeeccc-----CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 11 122 25555431 357899987 677889998888765
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=150.23 Aligned_cols=215 Identities=19% Similarity=0.106 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~ 163 (422)
....+++.+++.. ..++++++++|+.|+..++..++..|+.|+....+|.+.....+ .+|+....+..
T Consensus 78 t~~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~ 149 (409)
T KOG0053|consen 78 TRDVLESGIAALE--------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV 149 (409)
T ss_pred chHHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence 3567778888876 44569999999999999999999999999999999988755544 45656555432
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
-+++.+++.++++++++++..|.||+..+ .||++|+++|+++|+++|+|+.++...+ .....++.
T Consensus 150 -------~~~~~~~~~i~~~t~~V~~ESPsNPll~v---~DI~~l~~la~~~g~~vvVDnTf~~p~~-----~~pL~lGA 214 (409)
T KOG0053|consen 150 -------DDLKKILKAIKENTKAVFLESPSNPLLKV---PDIEKLARLAHKYGFLVVVDNTFGSPYN-----QDPLPLGA 214 (409)
T ss_pred -------hhHHHHHHhhccCceEEEEECCCCCcccc---ccHHHHHHHHhhCCCEEEEeCCcCcccc-----cChhhcCC
Confidence 26778888899899999999999999999 6899999999999999999999876421 12234455
Q ss_pred CCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDI 321 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 321 (422)
| |++.|.+|.+++.+ .=.|.++.+. +++..+++.... ...+++++......+-|+. +.-+.++
T Consensus 215 D---IV~hSaTKyi~Ghsdvi~G~iv~n~-------~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt-----l~lRi~~ 279 (409)
T KOG0053|consen 215 D---IVVHSATKYIGGHSDVIGGSVVLNS-------EELASRLKFLQEDLGWCEDPFDLFLLSRGLKT-----LHLRINK 279 (409)
T ss_pred C---EEEEeeeeeecCCcceeeeEEecCc-------HHHHHHHHHHHHHhcCCCCHHHHHHHhcCcch-----hhhhHHH
Confidence 4 99999999987654 3345555532 567777777664 3446677766666555544 3344455
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q 014603 322 LRETADICCDRLKEIPCIT 340 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~ 340 (422)
..++...+...|+..|.++
T Consensus 280 ~~ena~~~A~~Le~~~~v~ 298 (409)
T KOG0053|consen 280 HSENALKIALLLEAHPKVK 298 (409)
T ss_pred HHHHHHHHHHHhhhCCcee
Confidence 5566666666777655544
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-17 Score=143.24 Aligned_cols=294 Identities=19% Similarity=0.183 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccch----HHHHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY----EARATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~ 162 (422)
+....++++|+.+=+ + -.-+.+.+|++|+..++..+.++||.|+..+.-|.+. ...++.+|++++.+.
T Consensus 62 PT~~vlE~RiAaLEG-----G---~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd 133 (426)
T COG2873 62 PTTDVLEERIAALEG-----G---VAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVD 133 (426)
T ss_pred chHHHHHHHHHHhhc-----c---hhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeC
Confidence 456788888888642 1 2346678899999999999999999999999888664 445577899998875
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++|+++++....||.+.+ -|+++|+++|+++|+++|+|.....- -...++ ..+
T Consensus 134 ~-------~d~~~~~~aI~~nTkavf~EtigNP~~~v---~Die~ia~iAh~~gvpliVDNT~atp----yl~rP~-~hG 198 (426)
T COG2873 134 P-------DDPENFEAAIDENTKAVFAETIGNPGLDV---LDIEAIAEIAHRHGVPLIVDNTFATP----YLCRPI-EHG 198 (426)
T ss_pred C-------CCHHHHHHHhCcccceEEEEeccCCCccc---cCHHHHHHHHHHcCCcEEEecCCCcc----eecchh-hcC
Confidence 2 37899999999999999999999999999 47999999999999999999998641 111122 233
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc----hhH---------------------HHHHHhh--hhhccCc
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD----SGI---------------------VDSIKSF--LNISSDP 295 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~----~~~---------------------~~~~~~~--~~~~~~~ 295 (422)
.+ |++.|.+|+.++.|.-+|-+++......+.. |.+ +-+.+.. +....+.
T Consensus 199 AD---IVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~l 275 (426)
T COG2873 199 AD---IVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATL 275 (426)
T ss_pred CC---EEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhccccc
Confidence 33 9999999999999999998888655444421 110 0011111 1112233
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------CceEEEEecCcc
Q 014603 296 ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE-----------------GSMFVMVKLNYS 358 (422)
Q Consensus 296 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------------~g~~~~~~~~~~ 358 (422)
+++.......-|+. +.-+.++..++...+.+.|+++|.+..+.+|. .|-.+.+.+..+
T Consensus 276 sPfnAfl~lqGlET-----L~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg 350 (426)
T COG2873 276 SPFNAFLLLQGLET-----LSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGG 350 (426)
T ss_pred CcHHHHHHHhchhh-----hHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecCh
Confidence 33333333333322 45566778889999999999988876554442 233445555432
Q ss_pred cccCCCCHHHHHHHH------H---HhcCeEEecCCCCCC-------------CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 359 LLEGINSDMEFALKL------A---KEESVIVLPGITVGL-------------KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 359 ~~~~~~~~~~~~~~l------~---~~~gi~v~~g~~~~~-------------~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
. .....+++.+ + ..+-+.+-|.+.-.. ++.||+|++. |+++.++..|+++++
T Consensus 351 ~----ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVGI--Ed~~DiiaDl~qAl~ 424 (426)
T COG2873 351 Y----EAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGI--EDIDDIIADLEQALE 424 (426)
T ss_pred H----HHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEecc--CCHHHHHHHHHHHHh
Confidence 1 1122332322 1 122344555443211 6789999997 567777778887775
Q ss_pred H
Q 014603 417 R 417 (422)
Q Consensus 417 ~ 417 (422)
.
T Consensus 425 ~ 425 (426)
T COG2873 425 A 425 (426)
T ss_pred c
Confidence 3
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-16 Score=147.09 Aligned_cols=309 Identities=17% Similarity=0.150 Sum_probs=198.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH-HhhCCCeEEE
Q 014603 82 CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR-ATHSHLEVRH 160 (422)
Q Consensus 82 ~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~ 160 (422)
.|...+...+|++.+++++ ..+.++.+++||.|+++++...+++||.| +...|...... ....|...+.
T Consensus 73 ~Yagd~s~~~LE~~vAe~l--------G~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvD 142 (460)
T PRK13237 73 AYAGSRNFYHLEETVQEYY--------GFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVD 142 (460)
T ss_pred hhcCCCcHHHHHHHHHHHH--------CCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEe
Confidence 6887778899999999999 34579999999999999877778999965 55545433333 5566664443
Q ss_pred eecc--------CCCCcccCHHHHHHhhcCC----ceEEEEeCCCCCc-ccccCHHHHHHHHHHHHHcCcEEEEcccccc
Q 014603 161 FDLL--------PAKGWEVDLDAVEALADEN----TVALVIINPGNPC-GNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227 (422)
Q Consensus 161 ~~~~--------~~~~~~~d~~~l~~~~~~~----~~~i~i~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~ 227 (422)
+..+ ....+.+|++.|++.++++ +..+.+..++|.. |...|.++++++.++|++||+.||+|.++..
T Consensus 143 i~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~ 222 (460)
T PRK13237 143 IIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCV 222 (460)
T ss_pred eecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchh
Confidence 3211 1235789999999988653 3346667777877 7888999999999999999999999999864
Q ss_pred cc----------cCCCCCCC-ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc-c--
Q 014603 228 LA----------FGNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-S-- 293 (422)
Q Consensus 228 ~~----------~~~~~~~~-~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 293 (422)
.. |.+..... +..+... -...+.|++|.++.+- -|++++++ +++.++++...-.+ +
T Consensus 223 gna~fI~~re~~y~~~~i~ei~~e~~s~-aD~~t~S~~K~~~~~~--GG~i~t~D-------~eL~~~~r~~~~~~eG~~ 292 (460)
T PRK13237 223 ENAYFIKEREEGYQDKSIKEIVHEMFSY-ADGCTMSGKKDCLVNI--GGFLAMND-------EELFDEAKELVVVYEGMP 292 (460)
T ss_pred cChhhhcccccccCCCcHhHHhhhccCc-CcEEEEeCCCCCCCCC--ceEEEECC-------HHHHHHHHHhccccCCCc
Confidence 21 22211100 0011111 1267778999976651 28888876 67888887764211 1
Q ss_pred ---CcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc----ccccCCCC
Q 014603 294 ---DPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY----SLLEGINS 365 (422)
Q Consensus 294 ---~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~ 365 (422)
+.+.--+.++...|.+.. ..++..+... .++|.+.|.+. |+.++ .|.+|.-+++.... -..... .
T Consensus 293 tygg~~grd~~alAvgl~E~~~~~y~~~ri~~----~~~l~~~L~~~-Gvpv~-~p~ggH~v~vda~~~lph~~~~~~-p 365 (460)
T PRK13237 293 SYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQ----VRYLGEKLLAA-GVPIV-EPVGGHAVFLDARRFLPHLPQDQF-P 365 (460)
T ss_pred CCCChhhhHHHHHHhHHHhhchHHHHHHHHHH----HHHHHHHHHHC-CCcee-cCCCceEEEEEhHHhCCCCCcccC-h
Confidence 222223444444454422 3444444444 45566666665 78744 78888777775322 111111 3
Q ss_pred HHHHHHHHHHhcCeEEec-CCC-CCC-----------CCeEEEEec---cChHHHHHHHHHHHHHHHH
Q 014603 366 DMEFALKLAKEESVIVLP-GIT-VGL-----------KDWLRITFA---VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 366 ~~~~~~~l~~~~gi~v~~-g~~-~~~-----------~~~iRis~~---~~~~~l~~~~~~l~~~~~~ 417 (422)
...+..+|-.+.||--.- |+. ++. -..+|+.+. .+.+.++...++|..+.++
T Consensus 366 ~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 366 AQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred HHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 566666766677875432 221 111 157999997 4789999999999887654
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=144.08 Aligned_cols=339 Identities=17% Similarity=0.186 Sum_probs=221.8
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC---CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN---CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
|..++||=.+.... ..-..+|.+++++.++.+.-... .|.. -..++.+.+.+++ ..+.++-++.|-
T Consensus 58 Gk~ylDflsaysaV-nqGhchpki~~aLqeq~~kLtlssrafYnd--~~~~f~~~vt~lf--------~~~kvlpmnTGa 126 (427)
T KOG1402|consen 58 GKEYLDFLSAYSAV-NQGHCHPKIIKALQEQADKLTLSSRAFYND--VLGEFAEYVTKLF--------GYDKVLPMNTGA 126 (427)
T ss_pred ccchhhhhhhhhhc-ccCCCCHHHHHHHHHHHhHhhhhhHHHhhh--hHHHHHHHHHHhc--------Ccceeeecccch
Confidence 66777776554332 33467899999999998752221 2222 2345555555555 456788888889
Q ss_pred HHHHHHHHHhc------C--CC--CEEEecCCCccchHHHHhhCCCeEE----EeeccCCC----CcccCHHHHHHhhcC
Q 014603 121 QAIEVILTVLA------R--PG--ANILLPRPGFPYYEARATHSHLEVR----HFDLLPAK----GWEVDLDAVEALADE 182 (422)
Q Consensus 121 ~a~~~~~~~l~------~--~g--d~Vl~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~----~~~~d~~~l~~~~~~ 182 (422)
+|.+.++.... + |. ..|+....+|++-...+-..+.+.. +-|.-|.. .| -|.+.|+.+++.
T Consensus 127 Ea~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y-~d~eale~~l~~ 205 (427)
T KOG1402|consen 127 EAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY-GDAEALEVALKS 205 (427)
T ss_pred hHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc-CCHHHHHHHhcC
Confidence 99998876543 1 32 2566666777664322222221110 00111110 11 278899999887
Q ss_pred CceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC
Q 014603 183 NTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP 260 (422)
Q Consensus 183 ~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~ 260 (422)
...+.++..| +...|++ +|+..+++..++|.+||+++|.||+|.++.++|+.. ....-+..++++++ .|.+++.
T Consensus 206 ~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~l-a~d~env~PDivil---gKalSGG 281 (427)
T KOG1402|consen 206 PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLL-ACDYENVRPDIVIL---GKALSGG 281 (427)
T ss_pred CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEE-EeehhhcCCCeEEE---eccccCC
Confidence 6677777777 7788875 667789999999999999999999999999988632 11111222335555 4987555
Q ss_pred CceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---
Q 014603 261 GWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI--- 336 (422)
Q Consensus 261 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 336 (422)
=.++..+++. .+++..++...+ .+.+.+++..+++.++|+...+ +++.++.+.+-+.++..|.++
T Consensus 282 ~~Pvsavl~~--------~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e---ekL~era~~lG~~l~~~L~~l~~~ 350 (427)
T KOG1402|consen 282 VYPVSAVLAD--------DDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE---EKLVERAAKLGEILRDQLNKLQKK 350 (427)
T ss_pred eeeeEEEEec--------HHHHhccCCCccccccCCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccc
Confidence 5788888875 467777766553 3568899999999999886443 344555666666777777765
Q ss_pred -CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 337 -PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 337 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
|++. .....-|++..+.+.....++. ++.+.+..+ ++.|++..|.+ .+.||+.+. .+++++++++++|.+
T Consensus 351 ~p~~v-~~VRGrGl~~ai~i~~~~~~~~-~aw~~cl~l-k~~g~LAkptH----~~IiRfaPPL~I~e~dl~eg~e~i~k 423 (427)
T KOG1402|consen 351 FPHVV-KEVRGRGLLNAIVINPSKTSGQ-DAWDVCLAL-KENGLLAKPTH----GNIIRFAPPLVISEEDLREGIEAIEK 423 (427)
T ss_pred ccchh-heeeccceEEEEEeccccccch-hHHHHHHcc-cccccccCCCC----CCeEEecCCcccCHHHHHHHHHHHHH
Confidence 3333 2234457787777764332222 455665554 77899988865 578999987 789999999999998
Q ss_pred HHH
Q 014603 414 FYD 416 (422)
Q Consensus 414 ~~~ 416 (422)
++.
T Consensus 424 ~i~ 426 (427)
T KOG1402|consen 424 TIA 426 (427)
T ss_pred Hhc
Confidence 864
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=157.23 Aligned_cols=340 Identities=13% Similarity=0.080 Sum_probs=195.5
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHH-hhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHS-VRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~-~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
.+|+.++||..|......+ ..+|.+.+++.++ ...... ..+.. ....++.+.+++.+.... +...+.++|++|
T Consensus 55 ~dG~~ylD~~sg~~~~~lG-h~~p~i~~Ai~~q~~~~~l~~~~~~~~-~~~~~la~~l~~~l~~~~--p~~~~~v~f~~S 130 (464)
T TIGR00699 55 VDGNRLLDLYSQISSIPIG-YNNPALLKAAQSPEMATTLINRPALGN-FPSKDWAKILKEGILKVA--PKGQDQVWTGMS 130 (464)
T ss_pred CCCCEEEEccCCHhhhcCC-CCCHHHHHHHHHHHHHHhhcccccCCc-HHHHHHHHHHHHhHHhhC--CCCcCEEEEeCC
Confidence 3688899999887654232 4688999999984 232111 11211 112334444443222222 123468999999
Q ss_pred HHHHHHHHHHHhcC--------------------------C---CCEEEecCCCccchHHHHhhC-CCe-----------
Q 014603 119 CTQAIEVILTVLAR--------------------------P---GANILLPRPGFPYYEARATHS-HLE----------- 157 (422)
Q Consensus 119 ~~~a~~~~~~~l~~--------------------------~---gd~Vl~~~~~~~~~~~~~~~~-g~~----------- 157 (422)
|++|++.+++.... + ..+|+....+||+....+... +..
T Consensus 131 GsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~ 210 (464)
T TIGR00699 131 GSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFD 210 (464)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCC
Confidence 99999999886521 1 127999999999875544432 211
Q ss_pred EEEeeccCC-CCc-----------ccCHHHHHHhhcC--CceEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEE
Q 014603 158 VRHFDLLPA-KGW-----------EVDLDAVEALADE--NTVALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIA 221 (422)
Q Consensus 158 ~~~~~~~~~-~~~-----------~~d~~~l~~~~~~--~~~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~ 221 (422)
...+|.... ..+ .-+++.+++.+.. +..+.+|..| ....|.+. +++.++++.++|++||+++|+
T Consensus 211 ~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~ 290 (464)
T TIGR00699 211 WPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIV 290 (464)
T ss_pred ceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 011111100 000 0134556666642 3456666777 55567654 788899999999999999999
Q ss_pred cccccccccCCCCCCCccccCCC--CCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh-hhhhccCcchH
Q 014603 222 DEVYDHLAFGNTPFVPMGVFGSI--VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS-FLNISSDPATF 298 (422)
Q Consensus 222 D~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 298 (422)
||++.++..+|... ....++.. +++ .+++|.++..| +++.. +....... ....+...+++
T Consensus 291 DEV~tGfGrtG~~f-a~e~~gv~~~PDi---~t~gK~lg~gG----~~~~~---------~~~~~~~~~~~~~T~~gnp~ 353 (464)
T TIGR00699 291 DEVQTGVGATGKFW-AHEHWNLDDPPDM---VTFSKKFQTAG----YFFHD---------PAFRPNKPYRQFNTWMGDPS 353 (464)
T ss_pred eeeeeCCCCCcchh-HHHhcCCCCCCCE---EEehhhhccCC----ccccc---------hhccCCCCcccccCCCCCHH
Confidence 99999887766432 22222221 233 34579864444 33322 11110011 12335577888
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCC-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHH
Q 014603 299 IQGAVPQILEKTEEEFFSKITDILRETADICCDRLK----EIPC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL 373 (422)
Q Consensus 299 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 373 (422)
+.+++.+.|+...++ +..++++++-+++.+.|+ ++|. +..+-....|.++.+.++... ....+...+
T Consensus 354 ~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~-----~~~~i~~~~ 425 (464)
T TIGR00699 354 RALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEA-----KRDKLLKKA 425 (464)
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHH-----HHHHHHHHH
Confidence 888888888764322 223333333334444443 3442 221101134777777775320 133454544
Q ss_pred HHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 374 AKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 374 ~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
.++|+++.+.. .+.+|+.++ ++++++++++++|.+++
T Consensus 426 -~~~Gvl~~~~g----~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 426 -RNNGVNIGGCG----VKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred -HHCCcEEecCC----CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 55699997641 478999987 79999999999998764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=141.09 Aligned_cols=328 Identities=13% Similarity=0.116 Sum_probs=208.8
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
...++||+.++ |.++..+|++.++-.+++...... -.+....+..|+.+||+|- ..++.++.+
T Consensus 66 ~k~ilnFcaNn---YLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh--------~rED~ilyp 134 (417)
T KOG1359|consen 66 DKKILNFCANN---YLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFH--------GREDTILYP 134 (417)
T ss_pred ccceeeecccc---cccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHh--------CCCceEEec
Confidence 34578998887 667788999999988888752110 0111234678899999987 456788899
Q ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh----cCCceEEEEeCC-
Q 014603 118 GCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA----DENTVALVIINP- 192 (422)
Q Consensus 118 g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~----~~~~~~i~i~~p- 192 (422)
++-.|+..++.+++.|.|.|+.....|.++....+... .+ ..+|+-.++..+ +.+-+ ++++..
T Consensus 135 scfdANag~feail~pedAvfSDeLNhASIIdGirLck----ry-------~h~dv~~l~~~l~~a~k~r~k-lv~TDg~ 202 (417)
T KOG1359|consen 135 SCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCK----RY-------RHVDVFDLEHCLISACKMRLK-LVVTDGV 202 (417)
T ss_pred cccccchHHHHHhcChhhhhhccccccchhhhhhHHHh----hh-------ccchhHHHHHHHHHhhhheEE-EEEecce
Confidence 99999999999999999999999999988766655433 11 114545555432 22333 444544
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC-CCeEEEecCccccC-CCCceeEEEEee
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI-VPVLTLGSISKRWI-VPGWRLGWLVTS 270 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~sK~~~-~~G~r~G~~~~~ 270 (422)
-...|.+. ++++|.+++++||.++++||+|..+.++..+...-+.++.. +..++.++++|.+| ..| ||..+|
T Consensus 203 FSMDGdia---Pl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gyttgp 276 (417)
T KOG1359|consen 203 FSMDGDIA---PLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GYTTGP 276 (417)
T ss_pred eccCCCcc---cHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CCccCC
Confidence 56778874 57777888889999999999998766543333333334322 23488889999986 455 899887
Q ss_pred CCCCcccchhHHHHHHhhhh--hcc-CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFLN--ISS-DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
. .++..++.... .++ +.++.....+.++++.. ..-.+...+.+.+.+++++..+.- |+.+. ...
T Consensus 277 ~--------~li~llrqr~RpylFSnslppavV~~a~ka~dll--m~s~~~i~~~~a~~qrfr~~me~a-GftIs-g~~- 343 (417)
T KOG1359|consen 277 K--------PLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLL--MVSSKEIQSRQANTQRFREFMEAA-GFTIS-GAS- 343 (417)
T ss_pred h--------hHHHHHHhcCCceeecCCCChhhhhhhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhc-Cceec-CCC-
Confidence 4 46665554432 122 22222222223333321 112344556667777777776654 66622 211
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
-...-+.+.+. ..+....++++++ ||.|..-+.+.. .-.+|+.++ +++++++++++++.++.+.+.
T Consensus 344 hPI~pv~lGda-----~lA~~~ad~lLk~-Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~ 414 (417)
T KOG1359|consen 344 HPICPVMLGDA-----RLASKMADELLKR-GIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414 (417)
T ss_pred CCccceecccH-----HHHHHHHHHHHhc-CceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence 12322333221 1345667777665 999987665544 346777776 899999999999999887653
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=142.34 Aligned_cols=338 Identities=17% Similarity=0.148 Sum_probs=224.7
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
+..|+|=-.. | -.++.|++++-..+.+...- .|+--...+++++...+..++.+| .+..+|... |
T Consensus 26 ~~~ieLIASE-----N-~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg--a~~anVQPh-S 96 (413)
T COG0112 26 REHIELIASE-----N-FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG--AEYANVQPH-S 96 (413)
T ss_pred hhceeeeecc-----c-cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC--CCccccCCC-C
Confidence 4566664332 2 35689999998887663332 333344566777777676666554 333455544 4
Q ss_pred HHHHHHHHHHHhcCCCCEEEecCCCccchHHHH---hhCC--CeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCC
Q 014603 119 CTQAIEVILTVLARPGANILLPRPGFPYYEARA---THSH--LEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINP 192 (422)
Q Consensus 119 ~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~---~~~g--~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p 192 (422)
|++|+.+++.++++|||+|+-.+-.+.++.... ...| .+.+.++++++ +..+|.|++++...+ ++++++.-..
T Consensus 97 Gs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~kPK~ii~G~S 175 (413)
T COG0112 97 GSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEVKPKLIIAGGS 175 (413)
T ss_pred chHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHhCCCEEEECcc
Confidence 567888999999999999999887775543222 1222 45667777653 457999999987654 6666654322
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
..|- .-+++++.++|++-|.++++|.+|- ++.-+|..+.++.. . .++.+|.+|+| +|.|-|.+++++
T Consensus 176 aY~r-----~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~--A---dvVTtTTHKTl--rGPrGG~Il~~~ 243 (413)
T COG0112 176 AYSR-----PIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH--A---DVVTTTTHKTL--RGPRGGIILTND 243 (413)
T ss_pred cccc-----ccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc--c---ceEeCCcccCC--CCCCceEEEecc
Confidence 2211 1368999999999999999999985 45455655555443 2 28899999994 788889998864
Q ss_pred CCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce
Q 014603 272 PNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM 349 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 349 (422)
+++.+++...... .++|.....++...++.+..+..+++..+++-++.+.|.+.|.+. |+.++.......
T Consensus 244 -------eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnH 315 (413)
T COG0112 244 -------EELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNH 315 (413)
T ss_pred -------HHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccce
Confidence 4677777765432 345544555555556665445667888899999999999999987 777553333344
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC-C-----CCCeEEEEec------cChHHHHHHHHHHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-G-----LKDWLRITFA------VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-~-----~~~~iRis~~------~~~~~l~~~~~~l~~~~~~ 417 (422)
.+.+.+... + -....++.++.+.||.+.--.-+ . ....|||... ..++++++..+.|.+++..
T Consensus 316 l~lVDl~~~---~--~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 316 LVLVDLRSK---G--LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred EEEEEcccC---C--CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 555666521 1 13445566778889988743221 1 1567999975 3467999998888888765
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-16 Score=148.94 Aligned_cols=346 Identities=12% Similarity=0.033 Sum_probs=219.2
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHHHHHHHHHhhcCCCCCCC--CCEEEe
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPARRAIADYLNRDLPYKLSP--DDVYLT 116 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~ia~~l~~~~~~~~~~--~~i~~~ 116 (422)
..-|+|=-.. | -+++.+++++...+.+....+|+ -...+.+++....+...+.++..... .+|...
T Consensus 148 ~~~l~LIASE-----N-~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~ 221 (586)
T PLN02271 148 FKGIELIASE-----N-FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY 221 (586)
T ss_pred hcCeeecccc-----c-cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec
Confidence 4456663332 2 35688888888777664333333 23345567666666666555422111 344444
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH---------HhhCCCeEEE--eeccCCCCcccCHHHHHH-hhcCCc
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEAR---------ATHSHLEVRH--FDLLPAKGWEVDLDAVEA-LADENT 184 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~---------~~~~g~~~~~--~~~~~~~~~~~d~~~l~~-~~~~~~ 184 (422)
+|+.|+.+++.++++|||+|+..+..|.+.... +...|..... +++++ ..+.+|.+++++ +...++
T Consensus 222 -SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~-~~g~IDyd~lek~a~~~rP 299 (586)
T PLN02271 222 -SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP-QTGYIDYDKLEEKALDFRP 299 (586)
T ss_pred -cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc-ccCccCHHHHHHHhhhcCC
Confidence 778899999999999999999988877654332 2334544444 44543 345689999998 557788
Q ss_pred eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++|++....+| .. -+++++.++|+++|+++++|.+|......+. .+.++. .. .++.+|.+|++ .|.|
T Consensus 300 KLII~g~Sayp--r~---~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~--~a---Dvvt~TTHKtL--rGPr 367 (586)
T PLN02271 300 KILICGGSSYP--RE---WDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD--YC---DIVTSTTHKSL--RGPR 367 (586)
T ss_pred eEEEECchhcc--Cc---CCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc--CC---cEEEeCCcccC--CCCC
Confidence 98887666676 33 2578888999999999999999976443222 112222 12 28899999995 5556
Q ss_pred eEEEEeeCCCC------------cccchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 264 LGWLVTSDPNG------------ILQDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 264 ~G~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
.|.+++++... ....+++.+++..... +.+++.....++...++.+.....+.+..+++.++.+.|
T Consensus 368 GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaL 447 (586)
T PLN02271 368 GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQAL 447 (586)
T ss_pred ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 68888753200 0000234455544332 223444445666666676544344578889999999999
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-----CCCeEEEEec------
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRITFA------ 398 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~------ 398 (422)
.+.|.+. |+.++........+++.+.... .....+++.|++.||.+..-.-++ ..+.+||...
T Consensus 448 A~~L~~~-G~~vv~ggTdnHlvLvDl~~~g-----~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG 521 (586)
T PLN02271 448 ASALLRR-KCRLVTGGTDNHLLLWDLTTLG-----LTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRG 521 (586)
T ss_pred HHHHHHC-CCeEeeCCCCcceeeecCcccC-----CCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcC
Confidence 9999887 7775544444556777774321 134556777788899886433222 2567999975
Q ss_pred cChHHHHHHHHHHHHHHH
Q 014603 399 VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~ 416 (422)
..+++++++.+.|.++++
T Consensus 522 ~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 522 CLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 356888888888888875
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=148.16 Aligned_cols=324 Identities=13% Similarity=0.098 Sum_probs=212.6
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--------CCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEE
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--------FNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYL 115 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~ 115 (422)
..++|+-|. ...|++|++++.+.+.+.. ..+..+ ...+.+.++.+.+++ +.+-+.+-+++
T Consensus 7 ~~~~f~pGP------~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~----~~p~~y~v~~l 76 (365)
T PLN02452 7 RVFNFSAGP------ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELL----DIPDNYEVLFL 76 (365)
T ss_pred ceEeeeCCC------CCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHh----CCCCCceEEEE
Confidence 357887775 3567899999988753311 111111 122344455555555 32223345567
Q ss_pred ecCHHHHHHHHHHHhcCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCCC--cccCHHHHHHhhcCCceEEEEeC
Q 014603 116 TLGCTQAIEVILTVLARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPAKG--WEVDLDAVEALADENTVALVIIN 191 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~i~i~~ 191 (422)
..|||.++++++..++.+|+++++...+.++ +...++.+|...+.... +..+ ..+++++++. +++...+.+++
T Consensus 77 ~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~v~~~h 153 (365)
T PLN02452 77 QGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASG-KDEKYTKIPSVSEWEL--TPDAKFVHICA 153 (365)
T ss_pred eCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec-CCCCCCCCCChHHcCC--CCCCcEEEECC
Confidence 7999999999999999999999988877765 35666777753333311 1121 1345665522 34567788888
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
....||+.++ +++++. ++++|+|.+++. +..+.++..++ +.+.|..|.+|.+| +|++++++
T Consensus 154 nETstGv~~~--~~~~i~------~~~lvVDa~Ss~----g~~pidv~~~~-----v~~~saqK~lGP~G--l~~v~vr~ 214 (365)
T PLN02452 154 NETIHGVEFK--DYPDVG------NVPLVADMSSNF----LSKPVDVSKYG-----VIYAGAQKNVGPSG--VTIVIIRK 214 (365)
T ss_pred CCCCCcEecC--cccccC------CCeEEEECCccc----cCcccCHHHcC-----EEEEecccccCCCC--eEEEEEcH
Confidence 8889999642 344442 389999999987 33344555444 34569999998888 78888763
Q ss_pred CCCcccchhHHHHHHhh-------------hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 272 PNGILQDSGIVDSIKSF-------------LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
++++++... ....++|+....+++..+|+...+. .++.+.++.+++++.+++.|++.+
T Consensus 215 --------~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~ 286 (365)
T PLN02452 215 --------DLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESN 286 (365)
T ss_pred --------HHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 343333211 1123588888999999999876554 799999999999999999999987
Q ss_pred CCCCC-CCC--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHH
Q 014603 338 CITCP-KKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 338 ~~~~~-~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
++... ..+ ...+.+.+.++.. ....++.. .++++|+...+|...- .+ +|+|+- ++.++++++++.++
T Consensus 287 G~y~~~~~~~~rs~~~vsF~~~~~-----~~~~~f~~-~~~~~g~~~~~G~r~~-gg-~R~s~yna~~~~~v~~L~~~m~ 358 (365)
T PLN02452 287 GFYVCPVEKSVRSLMNVPFTLGGS-----ELEAEFVK-EAAKAGMVQLKGHRSV-GG-MRASIYNAMPLAGVEKLVAFMK 358 (365)
T ss_pred CcccCCCChHHhCCeEEEEEcCCc-----hhHHHHHH-HHHHCCCcccCCcccc-Cc-eEEECcCCCCHHHHHHHHHHHH
Confidence 76211 111 2344555556542 12444444 4578899999998652 33 999985 78999999999988
Q ss_pred HHHHH
Q 014603 413 AFYDR 417 (422)
Q Consensus 413 ~~~~~ 417 (422)
++-++
T Consensus 359 ~f~~~ 363 (365)
T PLN02452 359 DFQAK 363 (365)
T ss_pred HHHHh
Confidence 87654
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-17 Score=155.04 Aligned_cols=335 Identities=13% Similarity=0.140 Sum_probs=188.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++.... .+.. .....++.+.+++.+ + ..+.++|+++|+
T Consensus 45 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~la~~l~~~~----p---~~~~v~f~~sGs 114 (431)
T PRK06209 45 VDGNEYIEYGMGLRAVGLG-HAYPPVVEAVREALQDGC--NFTRPSAIELDAAESFLELI----D---GADMVKFCKNGS 114 (431)
T ss_pred CCCCEEEEccccccchhcC-CCCHHHHHHHHHHHHhCc--CCCCCCHHHHHHHHHHHHhC----C---ccceEEEecCHH
Confidence 3789999999886553333 457899999999998643 2322 111113444444443 1 236899999999
Q ss_pred HHHHHHHHHhcC-CC-CEEEec-CCCccchHHHHh-----hCCCe--EEEeeccCCCCcccCHHHHHHhhcC--CceEEE
Q 014603 121 QAIEVILTVLAR-PG-ANILLP-RPGFPYYEARAT-----HSHLE--VRHFDLLPAKGWEVDLDAVEALADE--NTVALV 188 (422)
Q Consensus 121 ~a~~~~~~~l~~-~g-d~Vl~~-~~~~~~~~~~~~-----~~g~~--~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~ 188 (422)
+|++.+++.... .| .+|+.. ..+|+++..... ..+.. ....... -. .-|++.+++.++. +..+.+
T Consensus 115 eA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~--~~-~~d~~~l~~~l~~~~~~~aav 191 (431)
T PRK06209 115 DATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVT--FR-YNDIASLEALFEDHPGRIACV 191 (431)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccc--cC-CCCHHHHHHHHHhCCCCEEEE
Confidence 999999885421 23 456555 344433211100 00100 0000000 00 1277888887743 345666
Q ss_pred EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 189 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
++.|. .|...+.+.+++|.++|++||+++|+||++.++.+.+..... .++..++ +.+++|.++ .|+++|+++
T Consensus 192 i~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~--~~gv~PD---i~t~gK~lg-gG~p~~av~ 263 (431)
T PRK06209 192 ILEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQK--LYGIVPD---LSCFGKALG-NGFAVSALA 263 (431)
T ss_pred EEccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhH--HhCCCcc---eeeehhhhc-CCcccEEEE
Confidence 77774 244777899999999999999999999999876543211111 1222222 355689964 578899999
Q ss_pred eeCCCCcccchhHHHH--HHh---h----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----c
Q 014603 269 TSDPNGILQDSGIVDS--IKS---F----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK----E 335 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~--~~~---~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~ 335 (422)
++ +++++. +.. . ...+.+++++..+++.+.|+...++. ..++++++-+++++.|+ +
T Consensus 264 ~~--------~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~L~~~~~~ 332 (431)
T PRK06209 264 GK--------REYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDED---VIERLHEQGAKLAAGVNEAAAE 332 (431)
T ss_pred EH--------HHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHh
Confidence 86 356654 211 1 12344667788888888887643222 33444444444444443 3
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccCCCCH--HHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSD--MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
++ +.......+.......+........... ..+...+ .++|+.+.| ++|+..+++++|+++++++.+
T Consensus 333 ~~-~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~p~---------l~is~~ht~~dId~~l~~l~~ 401 (431)
T PRK06209 333 HG-LQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQET-IRRGVLMPS---------LVVSYAHGDADIERTIDAVHG 401 (431)
T ss_pred CC-CCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHH-HHCCccccc---------ccccccCCHHHHHHHHHHHHH
Confidence 42 2201111222222111111000000011 1333444 566998732 477766899999999999999
Q ss_pred HHHHhc
Q 014603 414 FYDRHA 419 (422)
Q Consensus 414 ~~~~~~ 419 (422)
++++..
T Consensus 402 ~l~~~~ 407 (431)
T PRK06209 402 ALGVYR 407 (431)
T ss_pred HHHHHH
Confidence 998763
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-16 Score=148.79 Aligned_cols=320 Identities=16% Similarity=0.113 Sum_probs=194.0
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC-----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS-----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN 136 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~ 136 (422)
+.++++.+++.+.+.......|.- ..-+..+++.++++++ .+..++++++++|+..++.++ .+||+
T Consensus 97 ~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~G--------ae~a~vv~sgtaAl~l~l~~l-~~Gde 167 (464)
T PRK04311 97 LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTG--------AEDALVVNNNAAAVLLALNAL-AAGKE 167 (464)
T ss_pred CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHh-CCCCE
Confidence 467899999998876532112211 1123578888888873 346788888999999988665 78999
Q ss_pred EEecCCCccc------hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc--ccccCHHHHHHH
Q 014603 137 ILLPRPGFPY------YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC--GNVYTYQHLQKI 208 (422)
Q Consensus 137 Vl~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt--G~~~~~~~l~~i 208 (422)
|++++.++.. +.......|++++.++... ..+++++++.++++++++++++++|++ |.. ...++++|
T Consensus 168 VIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~-~~~dl~eI 242 (464)
T PRK04311 168 VIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINENTALLLKVHTSNYRIEGFT-KEVSLAEL 242 (464)
T ss_pred EEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCccCeEEEEEcCCCccccccC-CcCCHHHH
Confidence 9999875541 2335567898888886532 257889999999999999999999983 422 11468999
Q ss_pred HHHHHHcCcEEEEcccccccc----cCCCCCCCcc---ccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 209 AETAKKLGIMVIADEVYDHLA----FGNTPFVPMG---VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 209 ~~~~~~~~~~li~D~~~~~~~----~~~~~~~~~~---~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
+++|+++|+++|+|..++.+. +.-.....+. ..+.| ++++|.+|.+++| ..|+++++ +++
T Consensus 243 ~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaD---iv~fSg~K~LgGp--~~G~i~g~--------~~l 309 (464)
T PRK04311 243 AALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVD---LVTFSGDKLLGGP--QAGIIVGK--------KEL 309 (464)
T ss_pred HHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCc---EEEecCcccccCC--ceEEEEEc--------HHH
Confidence 999999999999999654331 1100011111 13333 8999999997666 37888875 467
Q ss_pred HHHHHhhhh-hccCcchHHHHHHHHHHhhch---H--------HHHHHHHHHHHHHHHHHHHHhhcCC--CC--CCCC--
Q 014603 282 VDSIKSFLN-ISSDPATFIQGAVPQILEKTE---E--------EFFSKITDILRETADICCDRLKEIP--CI--TCPK-- 343 (422)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~---~--------~~~~~~~~~~~~~~~~l~~~L~~~~--~~--~~~~-- 343 (422)
+++++.... ...........+..+.|.... + ..+....+++.++.+.+.+.|+.++ ++ .+..
T Consensus 310 i~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~ 389 (464)
T PRK04311 310 IARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSF 389 (464)
T ss_pred HHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEcc
Confidence 776663221 111222333333333443211 1 1123334667778888888887753 22 1110
Q ss_pred -CCCCce-------EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHH
Q 014603 344 -KPEGSM-------FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAF 414 (422)
Q Consensus 344 -~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~ 414 (422)
...+|. .+-+.+... ..+..++..+| ++....|..- -.++.+.+.+- ..++|++.++++|.++
T Consensus 390 ~~~gggs~p~~~~~~~~v~~~~~----~~~~~~l~~~l-r~~~~~i~~r---~~~~~~~ld~r~~~~~~~~~~~~~~~~~ 461 (464)
T PRK04311 390 SQVGGGSLPVDRLPSAAVTLTPK----DRSLEALAARL-RLLPPPVIGR---IEDGRLLLDLRTLEEEDEERLAAALLEA 461 (464)
T ss_pred CccCCCCCcCCCCCeEEEEEeCC----CCCHHHHHHHH-hcCCCCEEEE---EECCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence 001111 111222211 12455555544 5544333221 12566777775 6788999999998887
Q ss_pred HH
Q 014603 415 YD 416 (422)
Q Consensus 415 ~~ 416 (422)
+.
T Consensus 462 ~~ 463 (464)
T PRK04311 462 LN 463 (464)
T ss_pred hh
Confidence 53
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=159.67 Aligned_cols=347 Identities=13% Similarity=0.097 Sum_probs=211.5
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
.++|+..+.-....++..+|++.+|+.+++.+... +.......+....+|+.|.+..+ .-..+.|+|+++|++|++.
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~h--v~~~~~~hepa~~LAe~L~~~~~-~~~l~rVffs~sGSeAvE~ 442 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGH--VMFPENVHEPALRAAELLLGGPG-KGWASRVFFSDNGSTAIEV 442 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCc--cccCccCCHHHHHHHHHHHhccC-CCCCCEEEECCchHHHHHH
Confidence 67888777533222223589999999999976322 21111223455556666654211 0113689999999999999
Q ss_pred HHHHhc-------C--------------CCCEEEecCCCccchHHHHhhCCCe---------E------EEe--ecc---
Q 014603 126 ILTVLA-------R--------------PGANILLPRPGFPYYEARATHSHLE---------V------RHF--DLL--- 164 (422)
Q Consensus 126 ~~~~l~-------~--------------~gd~Vl~~~~~~~~~~~~~~~~g~~---------~------~~~--~~~--- 164 (422)
+++... . ...+|+....+||+....+...+.. . ..+ |..
T Consensus 443 AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~ 522 (817)
T PLN02974 443 ALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMR 522 (817)
T ss_pred HHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccc
Confidence 887542 1 1246999999998864433332210 0 001 000
Q ss_pred --------CCC--C--------cc-----cC------------HHHHHHhhc-------CCceEEEEeCC--CCCcccc-
Q 014603 165 --------PAK--G--------WE-----VD------------LDAVEALAD-------ENTVALVIINP--GNPCGNV- 199 (422)
Q Consensus 165 --------~~~--~--------~~-----~d------------~~~l~~~~~-------~~~~~i~i~~p--~nptG~~- 199 (422)
+.. . |. ++ .+.+++.+. .+..+.+|..| +...|.+
T Consensus 523 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~ 602 (817)
T PLN02974 523 NGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLL 602 (817)
T ss_pred cccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCccc
Confidence 000 0 00 00 134555553 24567777888 4666775
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQD 278 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 278 (422)
++++.++++.++|++||+++|.||++.++.++|..+ ....++..+++++ ++|.+ ..| +++|.++++
T Consensus 603 ~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~f-a~e~~gv~PDIi~---~gKgL-tgG~~Plaa~l~~-------- 669 (817)
T PLN02974 603 IDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVES-AWELLGCKPDIAC---YAKLL-TGGLVPLAATLAT-------- 669 (817)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchh-hHHhcCCCCCEEe---ecccc-cCCCCccEEEEEc--------
Confidence 578889999999999999999999999998888643 2334444444444 46994 678 699999986
Q ss_pred hhHHHHHHh-------hhhhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHH----HhhcCCCCCCCCCCC
Q 014603 279 SGIVDSIKS-------FLNISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCD----RLKEIPCITCPKKPE 346 (422)
Q Consensus 279 ~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~----~L~~~~~~~~~~~~~ 346 (422)
+++.+.+.. .+..+.+.++++++++.+.|+...+ +...+..+..++..+.+.+ .|+++|.+. - ...
T Consensus 670 ~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~-~-VRg 747 (817)
T PLN02974 670 EEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVE-R-VVS 747 (817)
T ss_pred HHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCee-E-EEe
Confidence 467777642 1234568899999999999887543 2333344444444444443 444555443 1 223
Q ss_pred CceEEEEecCcccc-cCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 347 GSMFVMVKLNYSLL-EGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 347 ~g~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
-|.++.+.+..... .+. .....+...+..++|+.++|. .+.+|+.+. ++++++++++++|.+.+
T Consensus 748 ~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-----Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 748 LGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-----GNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred eeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 36677777743210 011 012334444432789999884 267888765 78999999999998865
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=140.27 Aligned_cols=166 Identities=20% Similarity=0.141 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH-HHHhhCCCeEEEeeccCCC
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE-ARATHSHLEVRHFDLLPAK 167 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~ 167 (422)
+.++++.++++++ .+.+++++++|+++|+..++.++..++++|+++.++|++.. ..+...|.+++.++.+...
T Consensus 2 ~~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 75 (170)
T cd01494 2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG 75 (170)
T ss_pred HHHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCC
Confidence 4688999999983 46778999999999999999999888999999999999887 7888889999988876543
Q ss_pred CcccCHHHHHHh-hcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC
Q 014603 168 GWEVDLDAVEAL-ADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246 (422)
Q Consensus 168 ~~~~d~~~l~~~-~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (422)
....+.+.+++. ..++++++++++++|++|...+. ++|.++|+++|+++|+|++|..+...... ......+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~~~~---~ 148 (170)
T cd01494 76 YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG-VLIPEGG---A 148 (170)
T ss_pred ccchhhhhhhhccccCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc-ccccccc---C
Confidence 333333355443 35578888999999999998654 78888899999999999999876553211 1111122 2
Q ss_pred eEEEecCccccCCCCceeEEEEe
Q 014603 247 VLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
.+++.|++|.++. .++|++++
T Consensus 149 d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 149 DVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred CEEEEEcccccCC--CceEEEEe
Confidence 3888999999765 56899876
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-17 Score=148.52 Aligned_cols=339 Identities=17% Similarity=0.130 Sum_probs=195.9
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHHHHHHHHHhhcCCCCCCCCC--EE-E
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPARRAIADYLNRDLPYKLSPDD--VY-L 115 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~--i~-~ 115 (422)
...|+|--.. | .++|.+++++...+.+.....|+ -.....++++...+...+.++ .++++ +- =
T Consensus 20 ~~~l~LiaSE-----N-~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~--~~~~~w~anvq 91 (399)
T PF00464_consen 20 RSTLNLIASE-----N-YMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG--AEPKEWYANVQ 91 (399)
T ss_dssp HHSEE-CTT-----------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT---STTTEEEE--
T ss_pred hcCccccCcc-----c-ccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC--CCcccceEEee
Confidence 4557774433 2 35678888888777654333332 223344555555555555443 33332 22 2
Q ss_pred ecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH-----HH-----hhCCCeEEEeeccCCCCcccCHHHHHHhhcC-Cc
Q 014603 116 TLGCTQAIEVILTVLARPGANILLPRPGFPYYEA-----RA-----THSHLEVRHFDLLPAKGWEVDLDAVEALADE-NT 184 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~-----~~-----~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~ 184 (422)
..||+.|+.+++.+|++|||+|+..++.+.+... .. .-...+.+.++++++ ...+|.+++++.+.+ ++
T Consensus 92 p~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kP 170 (399)
T PF00464_consen 92 PHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEHKP 170 (399)
T ss_dssp -SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH--
T ss_pred cCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhcCC
Confidence 4678889999999999999999998877644321 11 112356778888764 567999999997754 66
Q ss_pred eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++|++.....|- .-+++++.++|++.|.+|++|.+|. ++.-+|..+.++.. .| ++.+|.+|+| +|.|
T Consensus 171 klIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~--AD---vvt~sThKtl--~GPr 238 (399)
T PF00464_consen 171 KLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY--AD---VVTGSTHKTL--RGPR 238 (399)
T ss_dssp SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT--SS---EEEEESSGGG---SSS
T ss_pred CEEEECchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc--ce---EEEeeccccc--cccC
Confidence 766654433322 2468999999999999999999986 34445555555543 22 8899999995 7888
Q ss_pred eEEEEeeC------CCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 264 LGWLVTSD------PNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 264 ~G~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
.|.++++. +..-...+++.+++...... .+++.....++...+|.+.....+++..+++-++.+.|.+.|.+
T Consensus 239 ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~ 318 (399)
T PF00464_consen 239 GGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQE 318 (399)
T ss_dssp -EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999861 00000015678888776543 23444445555555666533445678889999999999999999
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec----CCCC-CCCCeEEEEec------cChHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP----GITV-GLKDWLRITFA------VEPSAL 404 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~----g~~~-~~~~~iRis~~------~~~~~l 404 (422)
. |+.++........+|+.+.... -+...+...|++.||.+.. +..- .....+||+.. ..++++
T Consensus 319 ~-G~~v~~ggTd~H~vlvd~~~~~-----~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm 392 (399)
T PF00464_consen 319 R-GFKVVTGGTDNHQVLVDLRSFG-----IDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDM 392 (399)
T ss_dssp T-T-EEGGGS-SSSEEEEEGGGGT-----S-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHH
T ss_pred C-CcEEEECCCCCCeEEEEecccc-----cchHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHH
Confidence 8 7775533444567788875421 1334456677889999864 3311 11468999985 345677
Q ss_pred HHHHHH
Q 014603 405 EDGLGR 410 (422)
Q Consensus 405 ~~~~~~ 410 (422)
.++.+.
T Consensus 393 ~~iA~~ 398 (399)
T PF00464_consen 393 KEIAEL 398 (399)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-16 Score=146.79 Aligned_cols=281 Identities=18% Similarity=0.152 Sum_probs=196.1
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC-----C---
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR-----P--- 133 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~--- 133 (422)
.+++...+.+...+..... .....++..++++.+..++.+.++.+ ....=.+|+|+|+|+..++.+... .
T Consensus 73 ~~~~~a~~~~~~~~~~nl~-d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~ 150 (460)
T COG0076 73 RVPPVAAELLVSALNKNLG-DPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAE 150 (460)
T ss_pred CCHHHHHHHHHHHHhhcCC-CcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhc
Confidence 4556777777777765321 22222356799999999999877644 333457899999999877765421 1
Q ss_pred C------CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceE--EEEeCCCCCcccccCHHHH
Q 014603 134 G------ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA--LVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 134 g------d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~--i~i~~p~nptG~~~~~~~l 205 (422)
+ .+|+++...|.++...+..+|++.+.++..+. ++.+|++.+++++++.+.. ++-+-++.++|.+ +++
T Consensus 151 ~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~i---Ddi 226 (460)
T COG0076 151 SGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSI---DDI 226 (460)
T ss_pred ccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCcc---CCH
Confidence 1 27999999999999999999999999998875 6789999999999988777 8888889999999 899
Q ss_pred HHHHHHHHHcCcEEEEcccccccccC-CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFG-NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
++|.++|+++++++++|.+++++..- ...... ..+....-.-+..+++|. +..-..+||++.+|++ .+.+.
T Consensus 227 ~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~-~~f~l~~vdSIt~d~HK~-g~aP~~~G~il~rd~e------~l~~~ 298 (460)
T COG0076 227 EELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR-WDFGLEGVDSITVDGHKY-GLAPIGCGVVLFRDEE------ALRRI 298 (460)
T ss_pred HHHHHHHHHcCCcEEEEccccceeecccCccch-hhcCCCCceEEEECcccc-cCCCCCceEEEEECHH------Hhhhh
Confidence 99999999999999999999875531 111111 011111112555699999 6776789999998742 23333
Q ss_pred HHhhhh---------h--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEE
Q 014603 285 IKSFLN---------I--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMV 353 (422)
Q Consensus 285 ~~~~~~---------~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~ 353 (422)
+..... . .++.+.....+....|.....+++.++.++..+.++++.+.|++.+.++++..|. ...+.+
T Consensus 299 ~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~-l~~V~f 377 (460)
T COG0076 299 LIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPE-LPIVAF 377 (460)
T ss_pred hhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCc-cceEEE
Confidence 321110 1 1111111223333344444467888899999999999999999997788665564 445566
Q ss_pred ecCc
Q 014603 354 KLNY 357 (422)
Q Consensus 354 ~~~~ 357 (422)
+.+.
T Consensus 378 r~~~ 381 (460)
T COG0076 378 RLKD 381 (460)
T ss_pred EcCC
Confidence 6643
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=142.77 Aligned_cols=315 Identities=16% Similarity=0.059 Sum_probs=194.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCCCEEEecCCCcc
Q 014603 67 AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPGANILLPRPGFP 145 (422)
Q Consensus 67 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~ 145 (422)
+++++.+.+-.. .++.+ ...++-+.+.+.|.+.++.+.+.+-+++++|||.++++++.+++ ++|++|++.. .|.
T Consensus 19 ~~~~~~~~~~~~--~HRs~--~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG 93 (374)
T TIGR01365 19 SIEELKNAPLGR--SHRSK--LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFG 93 (374)
T ss_pred hHHHHhhhhccc--CcCCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHH
Confidence 667776654331 12222 22333333333343333322223346779999999999999998 5888998865 342
Q ss_pred -chH-HHHhhCCCe-EEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEc
Q 014603 146 -YYE-ARATHSHLE-VRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222 (422)
Q Consensus 146 -~~~-~~~~~~g~~-~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 222 (422)
.+. .+++..|.+ +..+... .+..+++++++. + +.+.+++....||+..|. +++...+ ++.++|+|
T Consensus 94 ~r~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv---~~i~~~~--~~~lliVD 161 (374)
T TIGR01365 94 KGWVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPN---GDFIPAD--REGLTICD 161 (374)
T ss_pred HHHHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC--C---CCEEEecCCCchheeccc---ccccccc--CCCcEEEE
Confidence 234 778888984 6666543 334578888873 1 225688888899999664 4444322 48999999
Q ss_pred ccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh---------------
Q 014603 223 EVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS--------------- 287 (422)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--------------- 287 (422)
.+.+.. ..+..+.. .| +++.|..|.+++|+ .+++++.++ +.+++.+.
T Consensus 162 avSs~g----~~~l~~d~--iD---v~~tgsQK~L~~pp-Gls~v~vs~--------~Al~~~~~~~~y~~~~~~~~~~~ 223 (374)
T TIGR01365 162 ATSAAF----AQDLDYHK--LD---VVTFSWQKVLGGEG-AHGMLILSP--------RAVARLESYTPAWPLPKIFRLTK 223 (374)
T ss_pred ccchhc----CCCCChhH--Cc---EEEEechhccCCCC-ceEEEEECH--------HHHHHHhhcCCCCCChhhhcccc
Confidence 998863 22233332 22 88889999997643 267777753 23322221
Q ss_pred --------h-hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CC--CceEEEEe
Q 014603 288 --------F-LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKK-PE--GSMFVMVK 354 (422)
Q Consensus 288 --------~-~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~--~g~~~~~~ 354 (422)
. ..+..+|+....+++..+|+...++ +++.+.++++++++.+++.+++++.+..... +. +.....+.
T Consensus 224 ~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~ 303 (374)
T TIGR01365 224 GGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLK 303 (374)
T ss_pred ccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEE
Confidence 0 1123356666677777777644443 6999999999999999999999843553321 11 22223344
Q ss_pred cCcccccCCC-C-----HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 355 LNYSLLEGIN-S-----DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 355 ~~~~~~~~~~-~-----~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
++.+...... + ..++ ...++++||.+.+|.....+..+||+.. .+.+++++++..|.=+.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 304 VVDPAIDALDEDAQADFAKEL-ISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred eCCccccccccchhhHHHHHH-HHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 4332110000 1 2444 4445677999998876554688999985 7899999999998866543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-15 Score=139.57 Aligned_cols=313 Identities=16% Similarity=0.134 Sum_probs=184.2
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC-----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS-----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN 136 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~-----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~ 136 (422)
+.++++.+++.+.+.......|.- ..-+..+++.++++++ .+..+++++++.|+..++.+ +.+||+
T Consensus 92 ~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~g--------ae~alvv~sg~aAi~l~l~~-l~~Gde 162 (454)
T TIGR00474 92 PLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTG--------AEDALVVNNNAAAVLLALNT-LAKGKE 162 (454)
T ss_pred CCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHH-hCCcCE
Confidence 567999999998886532112211 1124688899999883 23456778888999988865 578999
Q ss_pred EEecCCCccc------hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc--cc--ccCHHHHH
Q 014603 137 ILLPRPGFPY------YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC--GN--VYTYQHLQ 206 (422)
Q Consensus 137 Vl~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt--G~--~~~~~~l~ 206 (422)
|++++..|.. +....+..|++++.++.+. ..++++++++++++++++++++++|++ |. . .+++
T Consensus 163 VIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~---~dl~ 235 (454)
T TIGR00474 163 VIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEE---VSIA 235 (454)
T ss_pred EEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCC---CCHH
Confidence 9999876521 2345567898888886532 247899999999999999999999985 53 3 3689
Q ss_pred HHHHHHHHcCcEEEEcccccccccCC-----CCC--CCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 207 KIAETAKKLGIMVIADEVYDHLAFGN-----TPF--VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 207 ~i~~~~~~~~~~li~D~~~~~~~~~~-----~~~--~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
+|+++|+++|+++++|.+.+.+.-.+ ..+ ......+.| ++++|.+|++++| ..|+++++ +
T Consensus 236 ~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD---iv~fSg~K~LgGp--~~G~i~g~--------~ 302 (454)
T TIGR00474 236 ELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD---LVTFSGDKLLGGP--QAGIIVGK--------K 302 (454)
T ss_pred HHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC---EEEecCccccCCC--eEEEEEEC--------H
Confidence 99999999999999998644321100 101 011223333 8899999997666 37888875 3
Q ss_pred hHHHHHHhhhhh-ccCcchHHHHHHHHHHhhc---hH--------HHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCC
Q 014603 280 GIVDSIKSFLNI-SSDPATFIQGAVPQILEKT---EE--------EFFSKITDILRETADICCDRLKEI--PCITCPKKP 345 (422)
Q Consensus 280 ~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~---~~--------~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~ 345 (422)
+++++++..... .........++..+.+... .+ .-+....++++++.+.+.+.|++. +++.+-..+
T Consensus 303 ~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~ 382 (454)
T TIGR00474 303 ELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVP 382 (454)
T ss_pred HHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 555554432210 0111122222222222211 11 112233356667777788888764 332211011
Q ss_pred -----CCce-------EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-cChHHHHHHHHHH
Q 014603 346 -----EGSM-------FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGLGRM 411 (422)
Q Consensus 346 -----~~g~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l 411 (422)
.+|. .+-+.+... + .+..++..+| ++....|..- -.++.+.+.+- ..++|++.++++|
T Consensus 383 ~~~~~ggg~~p~~~l~~~~v~~~~~---~-~~~~~l~~~l-r~~~~~ii~r---~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 383 GLSQVGGGSLPDERLPSYAVTLTPD---G-LSAEKLEARL-RELPPPIIGR---IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred cCCcccCCCCcCCCCCeEEEEEecC---C-CCHHHHHHHH-hcCCCCEEEE---EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 1111 111222211 1 2455555544 6655333321 12566677765 5678888887765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-14 Score=146.20 Aligned_cols=261 Identities=13% Similarity=0.084 Sum_probs=171.5
Q ss_pred CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC---CceEEEEeCCCCCcccccCHHH-HHHHHH
Q 014603 135 ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE---NTVALVIINPGNPCGNVYTYQH-LQKIAE 210 (422)
Q Consensus 135 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~-l~~i~~ 210 (422)
++|+++...|......+...|++++.++.+ .++.+|+++|++.+++ +++++++++|+| +|.. ++ +++|++
T Consensus 579 ~~vlip~saHgtnPasa~~~G~~Vv~V~~d--~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~---e~~I~eI~~ 652 (939)
T TIGR00461 579 NICLIPVSAHGTNPASAAMAGMQVVPVNCD--QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVF---EPTIQHACD 652 (939)
T ss_pred CEEEEEccccCcCHHHHHHCCCEEEEeccC--CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Ccee---cccHHHHHH
Confidence 689999999977777888899999999875 3456999999999864 788999999999 7887 45 999999
Q ss_pred HHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC----CCCceeEEEEeeCCCCcccchhHHHHHH
Q 014603 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI----VPGWRLGWLVTSDPNGILQDSGIVDSIK 286 (422)
Q Consensus 211 ~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~----~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 286 (422)
+|+++|.++++|.++..... .......++.| ++++|.+|+|+ ..|..+|.+.+.+. +...+.
T Consensus 653 iah~~G~~v~VDgAq~~al~---~l~~Pg~~GaD---i~~~s~HKtf~~P~G~GGPg~G~i~vr~~--------L~~~lP 718 (939)
T TIGR00461 653 IVHSFGGQVYLDGANMNAQV---GLTSPGDLGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKSH--------LIPFLP 718 (939)
T ss_pred HHHHcCCEEEEEecChhhCC---CCCCccccCCC---EEEecCCccCCCCCCCCCCCeEEEEEhhh--------chhhcC
Confidence 99999999999999964111 11223445555 88899999765 24566899988632 111111
Q ss_pred h------------hh---hhc--cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce
Q 014603 287 S------------FL---NIS--SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM 349 (422)
Q Consensus 287 ~------------~~---~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 349 (422)
. .. ... ...+......+..+|.....+.+.+..+..-.+.+++.++|++. +.+......+.
T Consensus 719 g~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~--~~~l~~~~~~~ 796 (939)
T TIGR00461 719 KHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH--YPILFVGTLKH 796 (939)
T ss_pred CCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc--CcccccCCCCc
Confidence 0 00 000 11222233344444554456788888888888999999999874 34232222222
Q ss_pred E---EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 350 F---VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 350 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+ +.++++...........++..+|+ ++|+.... ..|...+.+-|.++ .+.++||++++.+.++.++..
T Consensus 797 ~~hEfv~~~~~~~~~~g~~~~dIakrL~-d~G~hapt-~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 797 VAHECILDLRPLKAKTGIEAIDVAKRLQ-DYGFHAPT-LSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred eeEEEEEeccchhhhcCCCHHHHHHHHH-hCCeeccc-cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 223443211111125677888775 56987543 33434455555555 788999999999988776653
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=149.44 Aligned_cols=305 Identities=16% Similarity=0.085 Sum_probs=187.3
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecC-HHHHHHHHHHHh----cCCCC----EEEecCCCccchHHHHhhCCCeEE
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLG-CTQAIEVILTVL----ARPGA----NILLPRPGFPYYEARATHSHLEVR 159 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g-~~~a~~~~~~~l----~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~ 159 (422)
..++...+.+++.+.+| .+++.+.++ ++++....+.++ .++|+ +|++++..|......+...|++++
T Consensus 540 ~l~~i~e~q~~l~eltG----~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv 615 (954)
T PRK05367 540 YRELIDQLEAWLAEITG----YDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVV 615 (954)
T ss_pred HHHHHHHHHHHHHHHHC----CCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEE
Confidence 44555555555555444 235766664 444443333222 24554 699999999888888889999999
Q ss_pred EeeccCCCCcccCHHHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 160 HFDLLPAKGWEVDLDAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 160 ~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
.++.+. ++.+|++.|++.+++ ++.++++++|++-.+.. +++++|+++|+++|+++++|.++..... + ..
T Consensus 616 ~v~~d~--~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e---~~I~eI~~i~h~~G~~v~VDgA~~~al~-~--l~ 687 (954)
T PRK05367 616 VVACDE--NGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFE---ETIREICEIVHEHGGQVYLDGANMNAQV-G--LA 687 (954)
T ss_pred EECCCC--CCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeec---CCHHHHHHHHHHcCCEEEEECcChhhcc-C--CC
Confidence 998753 346899999998865 46677888888753334 4689999999999999999999964211 1 11
Q ss_pred CccccCCCCCeEEEecCccccCC----CCceeEEEEeeCCCCcccchhHHHHHHhhh-------hhccCc--chH----H
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIV----PGWRLGWLVTSDPNGILQDSGIVDSIKSFL-------NISSDP--ATF----I 299 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~----~ 299 (422)
....++.| +++.|++|+|+. .|..+|.+.+.+. +...+.... ...+.. ++. .
T Consensus 688 ~pg~~GAD---i~~~s~HK~f~~P~G~GGPg~G~l~vr~~--------l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~ 756 (954)
T PRK05367 688 RPGDIGAD---VSHLNLHKTFCIPHGGGGPGVGPIGVKAH--------LAPFLPGHPVQIAGGETGIGAVSAAPFGSASI 756 (954)
T ss_pred ChhhcCCC---EEEecCcccCCCCcCCCCCceEEEeeccc--------ccccCCCCccCcCCCCCCcCcchhHHHHHHHH
Confidence 22344444 888899999753 3455888877521 222221110 000111 111 2
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce--EEEEecCcccccCCCCHHHHHHHHHHhc
Q 014603 300 QGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM--FVMVKLNYSLLEGINSDMEFALKLAKEE 377 (422)
Q Consensus 300 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (422)
...+..++.....+.+.+..+..-.+.+++.++|++...+. ...|.+.. -+.+.+.........+..++..+| .++
T Consensus 757 ~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~-~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL-~d~ 834 (954)
T PRK05367 757 LPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVL-YTGANGRVAHECILDLRPLKESTGITVDDIAKRL-IDY 834 (954)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccCCCCCcccceEEEeecccccCCCCHHHHHHHH-HHC
Confidence 22233344444467777777777789999999998753333 11221110 112222110000012457777777 677
Q ss_pred CeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 378 SVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 378 gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
|+....- .|...+.+||+++ ++++||+++++.++.+..+..
T Consensus 835 G~~~~t~-~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 835 GFHAPTM-SFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred CCeEeec-CCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 9987552 3445788999998 788999999999988877654
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-15 Score=141.61 Aligned_cols=263 Identities=17% Similarity=0.177 Sum_probs=169.2
Q ss_pred HHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCC-C---------C-CCCCEEEecCHHHHHHHHHHHhc----C---
Q 014603 71 IVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY-K---------L-SPDDVYLTLGCTQAIEVILTVLA----R--- 132 (422)
Q Consensus 71 ~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~-~---------~-~~~~i~~~~g~~~a~~~~~~~l~----~--- 132 (422)
+...++.. ...+...+...++++.+.+|+.+..+. + . +...-++|+|||+|+..++.+.. .
T Consensus 110 l~~~lN~n-~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~ 188 (522)
T TIGR03799 110 LMVALNQN-LVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADG 188 (522)
T ss_pred HHHHhcCC-cceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccc
Confidence 44444432 224444556779999999998775421 0 0 11234678999998877665421 1
Q ss_pred -------------------CCCEEEecCCCccchHHHHhhCCC---eEEEeeccCCCCcccCHHHHHHhhc----CCceE
Q 014603 133 -------------------PGANILLPRPGFPYYEARATHSHL---EVRHFDLLPAKGWEVDLDAVEALAD----ENTVA 186 (422)
Q Consensus 133 -------------------~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~ 186 (422)
++..|++++-+|+++...+...|+ +++.+|.+. ++.+|++.|++.++ ++++.
T Consensus 189 ~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~ 266 (522)
T TIGR03799 189 DFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKP 266 (522)
T ss_pred cccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCc
Confidence 134688899999999999998888 678888753 45799999999875 35444
Q ss_pred EEEe--CCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 187 LVII--NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 187 i~i~--~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++++ ..++.||.+ +++++|+++|+++|+++++|.+|++... .......+..+... ..+..|.+|++++| ..
T Consensus 267 ~~vvataGtt~tGai---Dpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~a--DSit~d~HK~l~~P-~g 340 (522)
T TIGR03799 267 LAIVGVAGTTETGNI---DPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERA--DSVTIDAHKQLYVP-MG 340 (522)
T ss_pred EEEEEEecCcCCCCc---CCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhC--CEEEEChhhcCCcC-cc
Confidence 4444 557789999 7789999999999999999999986321 11000012222111 26777999974332 44
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhh---h-----------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSF---L-----------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
+|+++.+++ .+.+.+... . ...++-+.. ...+..+|+......++++.++..++++++
T Consensus 341 ~G~llvr~~-------~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~-al~lw~aL~~lG~~G~~~ii~~~~~la~~l 412 (522)
T TIGR03799 341 AGMVLFKDP-------ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGM-AMLVYAGLHIIGRKGYELLIDQSIEKAKYF 412 (522)
T ss_pred cEEEEEeCH-------HHHHHhccCcchhcCCCCCccccceeecCcchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 899988753 233333221 0 011111111 123444455545678999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCceE
Q 014603 330 CDRLKEIPCITCPKKPEGSMF 350 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~ 350 (422)
.+.|++.|+++++..|.-+..
T Consensus 413 ~~~L~~~~~~el~~~p~l~iv 433 (522)
T TIGR03799 413 ADLIQQQPDFELVTEPELCLL 433 (522)
T ss_pred HHHHhhCCCeEEecCCCccEE
Confidence 999999999986655554433
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-15 Score=145.65 Aligned_cols=237 Identities=11% Similarity=0.045 Sum_probs=153.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEee
Q 014603 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFD 162 (422)
Q Consensus 83 y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~ 162 (422)
+.|...+.+.++..|+.++ .....++++|+|.++.+++.+++++||+|+++.+||.+........|+.++++.
T Consensus 201 ~~p~G~I~eAq~~aA~~fg-------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~ 273 (755)
T PRK15029 201 LDHTGAFGESEKYAARVFG-------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMV 273 (755)
T ss_pred CCCCcHHHHHHHHHHHHhC-------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEec
Confidence 3445557788888888884 235678899999999999999999999999999999999999999999998885
Q ss_pred ccCCC-C--cccC-----HHHHHHhhcC--Cce--------EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccc
Q 014603 163 LLPAK-G--WEVD-----LDAVEALADE--NTV--------ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224 (422)
Q Consensus 163 ~~~~~-~--~~~d-----~~~l~~~~~~--~~~--------~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~ 224 (422)
-.... + ..++ ++.+++++.. ..+ ++++++|+. -|+++ ++++|+++|+++++.|++|||
T Consensus 274 P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~---di~~I~~~~h~~~~~llvDEA 349 (755)
T PRK15029 274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCY---NAKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_pred ccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceee---CHHHHHHHHHhcCCeEEEECc
Confidence 32211 1 1234 8888887743 223 889999987 78884 789999999999999999999
Q ss_pred cccc-ccCCCCCCCcccc-----C-CCCCeEEEecCccccCCCCceeEE-EEeeCCCCcccchhHHHHHHhhhhh--ccC
Q 014603 225 YDHL-AFGNTPFVPMGVF-----G-SIVPVLTLGSISKRWIVPGWRLGW-LVTSDPNGILQDSGIVDSIKSFLNI--SSD 294 (422)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~-----~-~~~~~i~i~s~sK~~~~~G~r~G~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 294 (422)
|+.. .|... +.....+ . ....++++.|.+|++ +++..|. +...+.....+ .++++..... +++
T Consensus 350 hGah~~F~~~-~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv~~~~~~id----~~r~~~~l~~~qSTS 422 (755)
T PRK15029 350 WYGYARFNPI-YADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAIN----FSRFNQAYMMHATTS 422 (755)
T ss_pred cccccccCcc-ccccccccccccccCCCceEEEEchhhcc--cchhhhhhheeCCCccccC----HHHHHHHHHHHcCCC
Confidence 9753 33321 1111222 1 112359999999994 5665555 44433211111 2445544432 346
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 295 PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 295 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
|+.+.++.+..+........-.+..++..+....+++.+.+++
T Consensus 423 PSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 423 PLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred cHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666555544443322111223334444455555555555543
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-14 Score=132.79 Aligned_cols=323 Identities=16% Similarity=0.121 Sum_probs=204.7
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--------CCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--------FNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
..+|+-|. -..|++|.+++.+.+.+-. ..+..+ ...+.+.++.+.+++ +.+.+.+-+++.
T Consensus 5 ~~nF~aGP------a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll----~~P~~y~Vlfl~ 74 (364)
T PRK12462 5 QLNFSGGP------GALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLL----GIPDEYGVVFLQ 74 (364)
T ss_pred cceecCCC------cCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHh----CCCCCCeEEEEe
Confidence 56787775 2456888888887765411 111111 112334444444444 333333344667
Q ss_pred cCHHHHHHHHHHHhcCCCCEEE-ecCCCccc--hHHHHhhCCCeEEEeeccCCCC--cccCHHHHHHhhcCCceEEEEeC
Q 014603 117 LGCTQAIEVILTVLARPGANIL-LPRPGFPY--YEARATHSHLEVRHFDLLPAKG--WEVDLDAVEALADENTVALVIIN 191 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl-~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~i~i~~ 191 (422)
.|||.+++++...++.+||+++ +...++++ +...++.+| ++..+......+ ..++++.+ .++++.+.+.+|+
T Consensus 75 GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~ 151 (364)
T PRK12462 75 GGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVS 151 (364)
T ss_pred ccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEcc
Confidence 7799999999999999999665 44455543 355666666 444433211111 23455554 2344567777888
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
-...+|+..+ ++.+.++.++|+|.+.+.+. .+.++..+ .+++.|..|.+|.|| ++.++.++
T Consensus 152 NETstGv~~~--------~~~~~~~~llvvD~sS~~~s----~pid~~~~-----dvi~agsQKnlgP~G--ltvvivs~ 212 (364)
T PRK12462 152 NETVEGLQFP--------DAAGLPDSPLIADMSSDFMS----RPFDVEAY-----GMVYAHAQKNLGPAG--VTVAIIRR 212 (364)
T ss_pred CCCCceEecC--------cccccCCCeEEEEcCchhhC----CCCChHHc-----cEEEeeccccCCCCc--eEEEEECH
Confidence 8889999875 22223689999999987632 23344444 277888999999888 56777653
Q ss_pred CCCcccchhHHHHHHh-------------hhhhccCcchHHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHHHHHhhcC
Q 014603 272 PNGILQDSGIVDSIKS-------------FLNISSDPATFIQGAVPQILEKTEEE--FFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
+.+++... ......+|+....+++..+|+...++ +++.+.++.++.++.+++.+++.
T Consensus 213 --------~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~ 284 (364)
T PRK12462 213 --------ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDAL 284 (364)
T ss_pred --------HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 23322221 11233488889999999998876555 89999999999999999999998
Q ss_pred CCCCC-CCCC--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHH
Q 014603 337 PCITC-PKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 337 ~~~~~-~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l 411 (422)
+++.. ...+ .+-+-+.++++... ...++.. .+++.|+....|+.- -+.+|+|+- ++.+.++++++-+
T Consensus 285 ~~~~~~~~~~~~RS~mnv~f~~~~~~-----l~~~f~~-~a~~~gl~~lkGhr~--vgg~Ras~yna~~~e~v~~L~~fm 356 (364)
T PRK12462 285 NEVIDCHAHRAARSTMNVAFRFRQPR-----LDTLFKE-QSTEAGFCGLSGHRS--IGGIRASLYNAVSEQAVSRLCAFL 356 (364)
T ss_pred CCcccCCCChhhcCcceEEEEcCCHH-----HHHHHHH-HHHHCCCccccCCcc--cCceEEEcCCCCCHHHHHHHHHHH
Confidence 65431 2222 22344445554321 2334444 457889998777643 466999996 7888998888887
Q ss_pred HHHHHH
Q 014603 412 KAFYDR 417 (422)
Q Consensus 412 ~~~~~~ 417 (422)
+++-++
T Consensus 357 ~~f~~~ 362 (364)
T PRK12462 357 KDFAIR 362 (364)
T ss_pred HHHHHh
Confidence 776554
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-13 Score=130.46 Aligned_cols=346 Identities=16% Similarity=0.024 Sum_probs=216.4
Q ss_pred HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-CCCCCCCCC-CCCHHHHHHHHHHHhhcCC
Q 014603 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-ARFNCYSST-VGILPARRAIADYLNRDLP 105 (422)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~-~g~~~lr~~ia~~l~~~~~ 105 (422)
...++..+.+.+.+. ....|++ |.. .++. +..+.+.+.-.+.+ +....+++. -...++++.+.+|+.+.+|
T Consensus 75 ~~~~l~~~~~~~~~~---~~~~~gY--p~n-~~~d-~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g 147 (470)
T PLN02263 75 MASVLARYRKTLVER---TKHHLGY--PYN-LDFD-YGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE 147 (470)
T ss_pred HHHHHHHHHHHHHhc---ccceeCC--CCc-ccCC-hhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhC
Confidence 455555565555332 2225665 321 1121 23444444444433 222233321 1457889999999988776
Q ss_pred CCCCCCCEEEecCHHHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC
Q 014603 106 YKLSPDDVYLTLGCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN 183 (422)
Q Consensus 106 ~~~~~~~i~~~~g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 183 (422)
.+-+...=++|+|||+++..++.+..+ +...|++++..|+++..++..+|++++.+|.+ .++.+|++.|++.+.++
T Consensus 148 ~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d--~~g~mD~~aL~~aI~~d 225 (470)
T PLN02263 148 IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL--VSGEIDCADFKAKLLAN 225 (470)
T ss_pred CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC--CCCcCcHHHHHHHHHhC
Confidence 443222347899999999988776543 33478889999999999999999999999975 45679999999988654
Q ss_pred ---ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCc-----EEEEcccccccccCC-CCCCCccccCCCCCeEEEecCc
Q 014603 184 ---TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI-----MVIADEVYDHLAFGN-TPFVPMGVFGSIVPVLTLGSIS 254 (422)
Q Consensus 184 ---~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~D~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~s~s 254 (422)
+.+++.+-++.++|.+ +++++|.++|+++|+ ++++|.+|+++..-- .....+.-... -.-+..+++
T Consensus 226 ~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~--vDSIsvD~H 300 (470)
T PLN02263 226 KDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKP--IGSVSVSGH 300 (470)
T ss_pred CCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcC--ccEEEECCc
Confidence 3445566778899999 889999999999997 999999998754310 01111111111 114455899
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh--------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL--------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 326 (422)
|+ +.....+|.++.+++ ..+.+.... ...++-+......+-..|.....+.+.+..++..+++
T Consensus 301 K~-l~~P~~cgvll~R~~--------~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A 371 (470)
T PLN02263 301 KF-VGCPMPCGVQITRME--------HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNA 371 (470)
T ss_pred cc-cCCCcCEEEEEEehh--------hHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99 566678999998742 122221110 0111111111222333344444678888999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHH
Q 014603 327 DICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSAL 404 (422)
Q Consensus 327 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l 404 (422)
+++.+.|++. ++..+..|... .+.++-+ .... . .+|..+.+ .++.+++++. ++.+.+
T Consensus 372 ~~l~~~l~~~-g~~~~~~p~s~-~V~f~~p--------~~~~----~--~~gW~L~~-----~~~~~Hivvmphv~~~~i 430 (470)
T PLN02263 372 HYLKDRLREA-GISAMLNELSS-TVVFERP--------KDEE----F--VRRWQLAC-----QGNIAHVVVMPSVTIEKL 430 (470)
T ss_pred HHHHHHHHhC-CCeEEeCCCce-EEEEecC--------chHH----h--hcceEEcc-----CCCcEEEEEcCCCCHHHH
Confidence 9999999998 55545556543 3333332 1111 1 23665554 2356888886 578999
Q ss_pred HHHHHHHHHHHHH
Q 014603 405 EDGLGRMKAFYDR 417 (422)
Q Consensus 405 ~~~~~~l~~~~~~ 417 (422)
+++++.|++....
T Consensus 431 d~fi~DL~~~~~~ 443 (470)
T PLN02263 431 DYFLKELVEKRST 443 (470)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-14 Score=144.96 Aligned_cols=310 Identities=13% Similarity=0.090 Sum_probs=191.1
Q ss_pred CCCCC---CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec-CHHHHHHHHHHHhc----C---C-CCEEEecCCCccchH
Q 014603 81 NCYSS---TVGILPARRAIADYLNRDLPYKLSPDDVYLTL-GCTQAIEVILTVLA----R---P-GANILLPRPGFPYYE 148 (422)
Q Consensus 81 ~~y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~-g~~~a~~~~~~~l~----~---~-gd~Vl~~~~~~~~~~ 148 (422)
..|.| .+|+.++-..+.+++.+..| .+.+.+.+ +|..+..+++.++. . + .++|+++...|+...
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtG----md~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp 605 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITG----FDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP 605 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHC----CCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH
Confidence 35665 55655555455555544333 33445555 45555545555543 1 2 368899998886666
Q ss_pred HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccc
Q 014603 149 ARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225 (422)
Q Consensus 149 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~ 225 (422)
..+...|++++.++.+. ++.+|+++|++.++ +++.++++++|++-++.. +++++|+++|+++|+++++|.++
T Consensus 606 asa~~~GieVv~Vp~D~--~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~Galv~vDgA~ 680 (954)
T PRK12566 606 ASAQMAGMRVVIVECDP--DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE---EGIREICEVVHQHGGQVYMDGAN 680 (954)
T ss_pred HHHHHCCCEEEEeccCC--CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceec---chHHHHHHHHHHcCCEEEEEeeC
Confidence 66778899999999863 34699999999986 577788888888755443 67999999999999999999998
Q ss_pred cccccCCCCCCCccccCCCCCeEEEecCccccCCC----CceeEEEEeeCCCCcccchhHHHHHHhh------------h
Q 014603 226 DHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDSGIVDSIKSF------------L 289 (422)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~~~~~------------~ 289 (422)
.... ........++.| +++++++|+|+.| |.-+|.+.+.+ .+...+... .
T Consensus 681 ~~a~---~~l~~Pg~~GAD---i~~~s~HKtf~~P~G~GGP~vG~iav~~--------~L~pfLp~~P~~d~~G~~~r~g 746 (954)
T PRK12566 681 LNAQ---VGLARPADIGAD---VSHMNLHKTFCIPHGGGGPGMGPIGVRA--------HLAPFVANHPVVPVEGPDPNNG 746 (954)
T ss_pred hhhc---cCCCChhhcCCC---EEEecCCcccCcCccCCCCccchhhhhh--------hhhhhccCCCCcCCCCCCCCCC
Confidence 6311 112223456665 8899999998633 44466654432 111111110 1
Q ss_pred hhc--cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce-E--EEEecCcccccCCC
Q 014603 290 NIS--SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM-F--VMVKLNYSLLEGIN 364 (422)
Q Consensus 290 ~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~ 364 (422)
..+ ...+.....++..++.....+ +.+.......+.+++.++|++..++. . .+..+. + +.+.+.........
T Consensus 747 a~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~-~-~~~~~~~~hEfii~~~~l~~~~g~ 823 (954)
T PRK12566 747 AVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVL-Y-RGRNERVAHECILDLRPLKAQTGI 823 (954)
T ss_pred ceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCC-c-CCCCCCeeeEEEEEccccccccCC
Confidence 011 111212233344444443334 56666656778889999998753444 2 332222 1 11222211000112
Q ss_pred CHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 365 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 365 ~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+..++..+|+ ++||.... ..|...+.+||+++ .+++|||++++.++.+.++.
T Consensus 824 ~~~dvakRL~-d~Gihapt-~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 824 SEEDVAKRLM-DYGFHAPT-MSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred CHHHHHHHHH-HCCcEEeE-EeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 5677888876 77998654 34445789999998 78899999999999888774
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=140.61 Aligned_cols=320 Identities=13% Similarity=0.077 Sum_probs=205.1
Q ss_pred CCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 61 FRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
.+..+.+.+++...-... ....-+...-+.++++.+|+|++ .++.++|..| -..+...+.+++.+|.-|+
T Consensus 154 g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g-------~e~a~vF~mG-f~TNs~~~p~l~~~gsLIi 225 (519)
T KOG1357|consen 154 GPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLG-------VEDAIVFSMG-FATNSMNIPSLLGKGSLII 225 (519)
T ss_pred CcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcC-------CcceEEEecc-ccccccCcceeecCCccee
Confidence 456677777776653221 11112223446788889999984 4567777666 4455555788999999999
Q ss_pred ecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHH-Hhh---cCC-----ceEEEEeCC-CCCcccccCHHHHHHH
Q 014603 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE-ALA---DEN-----TVALVIINP-GNPCGNVYTYQHLQKI 208 (422)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~-~~~---~~~-----~~~i~i~~p-~nptG~~~~~~~l~~i 208 (422)
..+..|.++...++..|+.++.+..+. .-|+|.+. +.+ +++ .+.+++... ...-|.+ ..+.++
T Consensus 226 SDelNHaSi~~GaRLSgAtiRVfkHNd----m~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~i---v~Lp~v 298 (519)
T KOG1357|consen 226 SDELNHASLITGARLSGATTRVFRHND----MQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTI---VDLPEV 298 (519)
T ss_pred eccccchheeccccccCceEEEEecCC----HHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCee---cccHHH
Confidence 999999999999999999999887532 12444332 222 121 233444433 4566776 578999
Q ss_pred HHHHHHcCcEEEEccccccccc--CCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH
Q 014603 209 AETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286 (422)
Q Consensus 209 ~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 286 (422)
+++++++..+++.||+|+.... +|.....+...++.+..+.+++|.|+|+..| |++.++ +++++.++
T Consensus 299 valkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiags--------k~lid~lr 367 (519)
T KOG1357|consen 299 VALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGS--------KELIDYLR 367 (519)
T ss_pred HHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc---ceecCc--------HHHHhhhc
Confidence 9999999999999999986554 2333333333344444688999999999888 999886 46777776
Q ss_pred hhhhh----ccCcchHHHHHHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE--EEEecC
Q 014603 287 SFLNI----SSDPATFIQGAVPQILEKT----EEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF--VMVKLN 356 (422)
Q Consensus 287 ~~~~~----~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~ 356 (422)
..... +..++++.|.... .++.. ....-++..+++++++.+++..|+.. ++.+. ...+... +++..+
T Consensus 368 t~s~~~~yat~~sppvaqq~~s-sl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivy-G~~dSpVvplll~~~ 444 (519)
T KOG1357|consen 368 TPSPSALYATSLSPPVAQQILT-SVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVY-GNNDSPVVPLLLYGP 444 (519)
T ss_pred cCCCceeecccCChHHHHHHHH-HHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEe-cCCCCCcceeeecCc
Confidence 54421 2244445554443 33321 24556777889999999999999987 55523 3333322 222222
Q ss_pred cccccCCCCHHHHHHHHHHhcCeEEecCCCCC-C--CCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 357 YSLLEGINSDMEFALKLAKEESVIVLPGITVG-L--KDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~--~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
. .-..+-+.++++ ++.+....+.. . ...+|+|.+ ++.|+++++++.+.++-+.
T Consensus 445 ~-------k~~~f~r~~l~~-nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~ 502 (519)
T KOG1357|consen 445 A-------KIVAFSREMLER-NIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGDE 502 (519)
T ss_pred c-------cccHHHHHHHhc-CceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhchh
Confidence 1 123344455544 66555444433 2 577898887 7889999999998877543
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.3e-16 Score=142.46 Aligned_cols=237 Identities=18% Similarity=0.186 Sum_probs=146.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc
Q 014603 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (422)
|...+.+.++.+|+.+++ .+..++++|+|.++.+++.+++++||+|+++++||.+........|+.+++++..
T Consensus 64 p~G~I~eAe~~aA~~fGA-------d~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~ 136 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGA-------DKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPE 136 (417)
T ss_dssp TBTHHHHHHHHHHHHHTE-------SEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEE
T ss_pred CccHHHHHHHHHHHhcCC-------CeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCC
Confidence 444577889999999843 3467788999999999999999999999999999999999999999998887654
Q ss_pred CCC-C--cccCH-----HHHHHhhcC--CceE---EEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccc-cc
Q 014603 165 PAK-G--WEVDL-----DAVEALADE--NTVA---LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHL-AF 230 (422)
Q Consensus 165 ~~~-~--~~~d~-----~~l~~~~~~--~~~~---i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~-~~ 230 (422)
.+. + ..+++ +.+++++++ ..++ +++++|+. -|+++ ++++|+++|+++++.|++|||++.. .|
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~---di~~I~~~~h~~~~~llvDEAhGah~~F 212 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCY---DIKEIAEICHKHGIPLLVDEAHGAHFGF 212 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGC
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEE---CHHHHHHHhcccCCEEEEEccccccccC
Confidence 211 1 23455 888887754 3344 89999987 78884 7899999999999999999998753 33
Q ss_pred CCCCCCCccccCC----CCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhh--hccCcchHHHHHH
Q 014603 231 GNTPFVPMGVFGS----IVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLN--ISSDPATFIQGAV 303 (422)
Q Consensus 231 ~~~~~~~~~~~~~----~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~ 303 (422)
.. .+.+...++. +..++++.|.+|++ +++.. +++...+... . -.++++.... .+.+|+.+.++.+
T Consensus 213 ~~-lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~-v----~~~~~~~~l~~~~TTSPSY~lmASl 284 (417)
T PF01276_consen 213 HP-LPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRI-V----DHERVNEALSMHQTTSPSYPLMASL 284 (417)
T ss_dssp SG-GGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCC-T----THHHHHHHHHHHS-SS--HHHHHHH
T ss_pred CC-CccchhhccCccccccceeeeechhhcc--cccccceEEEecCCCc-c----cHHHHHHHHHHHcCCChHHHHHHHH
Confidence 31 1112122222 23479999999994 55554 5556654321 1 1344444332 2346666666555
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHh---hcCCCCC
Q 014603 304 PQILEKTEEEFFSKITDILRETADICCDRL---KEIPCIT 340 (422)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~~ 340 (422)
..+........=++..++..++.+.+++.| .++.++.
T Consensus 285 D~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~ 324 (417)
T PF01276_consen 285 DVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDIWGFK 324 (417)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSE
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEe
Confidence 544433211222333344444444555555 5554544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=138.10 Aligned_cols=271 Identities=20% Similarity=0.189 Sum_probs=164.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..+..+...+ .-+|.+.+++.+++..... ........+.+..+++.|.+..+ -..+.+++++||++|
T Consensus 14 dG~~~lD~~~~~~~~~lG-h~~p~i~~ai~~~~~~~~~--~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseA 88 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLG-HNHPEIAEAIAEQANKLNY--VSFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGSEA 88 (339)
T ss_dssp TSEEEEESSHHHHTTTT--BT-HHHHHHHHHHHHHCSS--CSTTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHHHH
T ss_pred CCCEEEECCCCccceecC-CCccccchhHHHHhhhccc--ccccceeccchhhhhhhhhhccc--cccceeeeccCchHH
Confidence 688899998775443222 3568999999999876322 12122233455566666655442 255799999999999
Q ss_pred HHHHHHHhc-------C-CCCEEEecCCCccchHHHHhhC-C------------CeEEEeeccCCCC---cccCHHHHHH
Q 014603 123 IEVILTVLA-------R-PGANILLPRPGFPYYEARATHS-H------------LEVRHFDLLPAKG---WEVDLDAVEA 178 (422)
Q Consensus 123 ~~~~~~~l~-------~-~gd~Vl~~~~~~~~~~~~~~~~-g------------~~~~~~~~~~~~~---~~~d~~~l~~ 178 (422)
++.+++... . ...+|+....+||+....+... + ..+..+|...... .....+.+++
T Consensus 89 ve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 168 (339)
T PF00202_consen 89 VEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEE 168 (339)
T ss_dssp HHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHH
Confidence 999998765 1 2379999999998864433321 1 1233444321000 0000111222
Q ss_pred ---hhcCCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecC
Q 014603 179 ---LADENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSI 253 (422)
Q Consensus 179 ---~~~~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 253 (422)
....+..+.++..| +...|. .++++.+++|.++|++||+++|+||++.++.++|... ....++..++++++
T Consensus 169 ~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~-a~~~~gv~PDiv~~--- 244 (339)
T PF00202_consen 169 LIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF-ASEHYGVDPDIVTF--- 244 (339)
T ss_dssp HHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS-GHHHHTSSSSEEEE---
T ss_pred HHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCcc-ceecccccCccccc---
Confidence 22334556667777 444565 5677889999999999999999999999988887643 33444444445444
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
+|.+ ..|+++|.++++ +++.+.+.... ..+...++++++++.+.|+...+.. ..++++++.+++.+.
T Consensus 245 gK~l-~gG~p~sav~~~--------~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~---~~~~~~~~g~~l~~~ 312 (339)
T PF00202_consen 245 GKGL-GGGLPISAVLGS--------EEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEED---LLERVRELGERLREG 312 (339)
T ss_dssp EGGG-GTTSSEEEEEEE--------HHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred ccch-hhhhhccccccc--------chhhccccccccccccccchHhhhhhhhHHHhhccHH---HHHHHHHHHHHHHHH
Confidence 5996 556999999987 45666553333 2345678899999999888644321 233334444444444
Q ss_pred hh
Q 014603 333 LK 334 (422)
Q Consensus 333 L~ 334 (422)
|+
T Consensus 313 L~ 314 (339)
T PF00202_consen 313 LR 314 (339)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=139.60 Aligned_cols=245 Identities=15% Similarity=0.133 Sum_probs=157.9
Q ss_pred CcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCC
Q 014603 63 TASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP 142 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~ 142 (422)
+.|++.++|.+.... .. .|+......++++.+++++ ..+..+|+++||.|..++++++++|++.|++..+
T Consensus 7 ~~~~m~~a~~~a~~g-d~-~Yg~D~~~~~l~~~i~~l~--------g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~ 76 (290)
T PF01212_consen 7 PTPAMLEAMAAANVG-DD-AYGEDPTTARLEERIAELF--------GKEAALFVPSGTMANQLALRAHLRPGESVICADT 76 (290)
T ss_dssp S-HHEEHHHHHTTSB--C-CTTSSHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETT
T ss_pred CCHHHHHHHHccccC-Cc-ccCCChhHHHHHHHHHHHc--------CCCEEEEeCCCChHHHHHHHHHHhcCCceecccc
Confidence 458999999554433 33 6998888999999999999 3456789999999999999999999999999999
Q ss_pred Cccch---HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCC-cccccCHHHHHHHHHHH
Q 014603 143 GFPYY---EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNP-CGNVYTYQHLQKIAETA 212 (422)
Q Consensus 143 ~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~np-tG~~~~~~~l~~i~~~~ 212 (422)
+|... .......|.+++.++.. ++..+++++|++.+.. ++++|.+++|+|. .|+++|.+++++|.++|
T Consensus 77 aHi~~~E~ga~~~~~G~~~~~l~~~--~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a 154 (290)
T PF01212_consen 77 AHIHFDETGAIEELSGAKLIPLPSD--DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELA 154 (290)
T ss_dssp EHHHHSSTTHHHHHTTCEEEEEBEC--TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHH
T ss_pred ceeeeeccchhhHhcCcEEEECCCc--ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHH
Confidence 88432 33345578888877753 2257999999997743 5688899999885 48999999999999999
Q ss_pred HHcCcEEEEcccccccc--cCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh
Q 014603 213 KKLGIMVIADEVYDHLA--FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN 290 (422)
Q Consensus 213 ~~~~~~li~D~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (422)
+++|+.++.|.+--.-. ..+. ++..+...-+ ++..|++|.+++++ |.+++-+ ++++++......
T Consensus 155 ~~~gl~lhmDGARl~~a~~~~~~---~~~e~~~~~D-~v~~~~tK~~g~~~---Gavl~~~-------~~~i~~~~~~~k 220 (290)
T PF01212_consen 155 REHGLPLHMDGARLANAAAALGV---SLAEIAAGAD-SVSFGGTKNGGAPG---GAVLAGN-------KEFIAKARRQRK 220 (290)
T ss_dssp HHHT-EEEEEETTHHHHHCHHHH---HHHHHHTTSS-EEEEETTSTT-SSS---EEEEEES-------HHHHHHHHHHHH
T ss_pred HhCceEEEEehhhHHHhhhcccc---cHHHHhhhCC-EEEEEEEccccccc---ceEEEec-------hHHHHHHHHHHH
Confidence 99999999999953211 1111 1122211112 55568999876665 5655543 454444333321
Q ss_pred hc-cCc--chHHHH------HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014603 291 IS-SDP--ATFIQG------AVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC 338 (422)
Q Consensus 291 ~~-~~~--~~~~~~------a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 338 (422)
.. +.. ..+..+ ++...++. + .....+..++.+.+.+.|+.+++
T Consensus 221 ~~gg~~~~~G~~~a~~~~~~~~l~~l~~----~-~~~~~~~~~~A~~La~~l~~~~~ 272 (290)
T PF01212_consen 221 RLGGGMRQAGVLAAAELYQFAALRALEL----W-LERARHANAMAKRLAAGLEALGG 272 (290)
T ss_dssp HHTHHHHHTTHHHHHHHHHHHHHCHEEC----S-HHHHHCHHHHHHCHHHCHHEECE
T ss_pred HhccCeeecceeeeechhhHHHHHHHHh----h-HHHHHHHHHHHHHHHHHHHHCCC
Confidence 11 100 111111 22222322 1 33445566778888888888744
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-13 Score=138.84 Aligned_cols=295 Identities=17% Similarity=0.166 Sum_probs=189.1
Q ss_pred CcHHHHHHHHHHhhCCCCCCCCCCC-----C----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cC
Q 014603 63 TASVAVDAIVHSVRSARFNCYSSTV-----G----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-AR 132 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~ 132 (422)
.|+.+.+.+.+- ...+..|.|.+ | +-++++.++++. +.+..++.+..++|++.++++.++ ..
T Consensus 90 ~P~vi~~~i~~~--~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~Lt------G~~~anaSl~d~aTAa~ea~~~a~~~~ 161 (954)
T PRK05367 90 TPPVILRNILEN--PAWYTAYTPYQPEISQGRLEALLNFQTMVADLT------GLEIANASLLDEATAAAEAMALAKRVS 161 (954)
T ss_pred CcHHHHHHHHhC--cchhhccCCCChHHHHHHHHHHHHHHHHHHHHH------CCChhhccccccHHHHHHHHHHhhhhc
Confidence 344454544441 12345666543 2 345677788877 678889999999999999888776 23
Q ss_pred C--CCEEEecCCCccchHH----HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHH
Q 014603 133 P--GANILLPRPGFPYYEA----RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQ 206 (422)
Q Consensus 133 ~--gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~ 206 (422)
+ +++|++++.+|+.... .++..|++++.++... |.+ ++++.++++.+| |.+|.+ ++++
T Consensus 162 ~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~------d~~------~~~~~~vlvq~p-~~~G~i---~d~~ 225 (954)
T PRK05367 162 KSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK------ALD------HDDVFGVLLQYP-GTSGEV---RDYT 225 (954)
T ss_pred cCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc------CCC------cccEEEEEEecC-CCCeee---ccHH
Confidence 4 4899999999987653 4566799998887532 111 224444555565 569999 5799
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc-----cCCCCceeEEEEeeCCCCcccchhH
Q 014603 207 KIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR-----WIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 207 ~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~-----~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
+|+++|+++|+++++|..+..+.. ..+...++.| +++++.+|+ ||+|| .|++.+++ ++
T Consensus 226 ~i~~~ah~~Gal~~vda~~~Al~~----l~~pge~GaD---i~vgs~qkfg~P~g~GGP~--aGflavr~--------~~ 288 (954)
T PRK05367 226 ALIAAAHARGALVAVAADLLALTL----LTPPGEMGAD---IAVGSAQRFGVPMGFGGPH--AAYFAVRD--------AY 288 (954)
T ss_pred HHHHHHHHcCCEEEEEehhhhccC----CCChhhcCCC---EEEeeCcccCCCCCCCCCC--EEEEEECH--------HH
Confidence 999999999999999986533221 1234566666 999999998 66665 88888863 33
Q ss_pred HHHHHhh-------------------------hhhccCcchHH---HHHHHHH--HhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 282 VDSIKSF-------------------------LNISSDPATFI---QGAVPQI--LEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 282 ~~~~~~~-------------------------~~~~~~~~~~~---~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
.+++... +.-..+.|.-. ..++.+. +......+++++.++...+..++.+
T Consensus 289 ~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~ 368 (954)
T PRK05367 289 KRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAA 368 (954)
T ss_pred HhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3333210 00001212111 1111111 2323467788999999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
.|+.. ++.+...+..+ .+.++++. +..++..++ .++||.+..- ..+.+|+|++ +++++|+.+++
T Consensus 369 ~L~~~-G~~~~~~~~f~-~~~~~~~~-------~~~~i~~~l-~~~gi~~~~~----~~~~l~is~~e~~t~~did~l~~ 434 (954)
T PRK05367 369 GLRAL-GLEVVHDSFFD-TLTVEVGG-------DAAAVLARA-LAAGINLRRV----DDDHVGISLDETTTREDLAALLA 434 (954)
T ss_pred HHHhc-CcccCCCCCCC-eEEEeCCC-------CHHHHHHHH-HHCCceeccc----cCCEEEEEecccCCHHHHHHHHH
Confidence 99874 77733222111 22233321 466777776 5569888332 1567999998 78999999999
Q ss_pred HHH
Q 014603 410 RMK 412 (422)
Q Consensus 410 ~l~ 412 (422)
.|.
T Consensus 435 ~l~ 437 (954)
T PRK05367 435 VFG 437 (954)
T ss_pred HHc
Confidence 996
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-13 Score=135.38 Aligned_cols=170 Identities=12% Similarity=0.137 Sum_probs=120.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH-HhhCCCeEEEeec
Q 014603 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR-ATHSHLEVRHFDL 163 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~~~~ 163 (422)
+...+.+.++.+|+.+++ .+..++++|+|.++.+++.+++.+||.||++++||.+.... ....|+.++++.-
T Consensus 172 ~eG~i~eAq~~AA~~fgA-------d~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P 244 (720)
T PRK13578 172 HEGAAKDAQKHAAKVFNA-------DKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLET 244 (720)
T ss_pred CChHHHHHHHHHHHHhCC-------CceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeec
Confidence 344467888888888842 34678899999999999999999999999999999988775 7789999888764
Q ss_pred cCCCCc----ccCH-----HHHHHhhcCC----------ceEEEEeCCCCCcccccCHHHHHHHHHH-HHHcCcEEEEcc
Q 014603 164 LPAKGW----EVDL-----DAVEALADEN----------TVALVIINPGNPCGNVYTYQHLQKIAET-AKKLGIMVIADE 223 (422)
Q Consensus 164 ~~~~~~----~~d~-----~~l~~~~~~~----------~~~i~i~~p~nptG~~~~~~~l~~i~~~-~~~~~~~li~D~ 223 (422)
.. +.+ .++. +.+++.+.++ .+++++++|+. -|+++ ++++|+++ ++.++ .|++||
T Consensus 245 ~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~y---di~~I~~~~~h~~~-~llvDE 318 (720)
T PRK13578 245 AR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIY---NARQVVDKIGHLCD-YILFDS 318 (720)
T ss_pred cc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceee---cHHHHHHHhhccCC-cEEEeC
Confidence 33 122 2354 4477776543 47889999987 78886 56777777 67777 999999
Q ss_pred cccccc-cCCC--CCC-CccccCCC-CCeEEEecCccccCCCCceeEE-EEe
Q 014603 224 VYDHLA-FGNT--PFV-PMGVFGSI-VPVLTLGSISKRWIVPGWRLGW-LVT 269 (422)
Q Consensus 224 ~~~~~~-~~~~--~~~-~~~~~~~~-~~~i~i~s~sK~~~~~G~r~G~-~~~ 269 (422)
|++.+. |... ... .....+.+ +.++++.|.+|.+ +++..+. +..
T Consensus 319 Ahgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~LHv 368 (720)
T PRK13578 319 AWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQIHK 368 (720)
T ss_pred cchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhhhhc
Confidence 987532 3321 011 11223333 4579999999984 5655544 444
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-13 Score=122.84 Aligned_cols=340 Identities=16% Similarity=0.143 Sum_probs=210.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
.+-+|||-+...+ -.+.+.++++|.. + ...|...+....|++.+++++ ..+.+++|..++.+-
T Consensus 40 ~dV~IDLrSDTgT----~apS~~m~aAM~~----G-DD~Y~gdpSv~~Lee~vael~--------G~E~alpthqGRgaE 102 (467)
T TIGR02617 40 EDVFIDLLTDSGT----GAVTQSMQAAMMR----G-DEAYSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAE 102 (467)
T ss_pred CCeEEECccCCCC----CCCCHHHHHHHHc----C-CcccccCchHHHHHHHHHHHh--------CCceEEECCCCchHH
Confidence 3446888766544 1356888888886 2 236887778899999999999 345688999999999
Q ss_pred HHHHHHhcC-CCCEEEecCC-------Cccc-hHHHHhhCCCeEEEeecc--------CCCCcccCHHHHHHhhcC----
Q 014603 124 EVILTVLAR-PGANILLPRP-------GFPY-YEARATHSHLEVRHFDLL--------PAKGWEVDLDAVEALADE---- 182 (422)
Q Consensus 124 ~~~~~~l~~-~gd~Vl~~~~-------~~~~-~~~~~~~~g~~~~~~~~~--------~~~~~~~d~~~l~~~~~~---- 182 (422)
.++++.+++ +|+++.+..+ .|.. ....+...|+.++.++.. ......+|++.+++.+++
T Consensus 103 ~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~ 182 (467)
T TIGR02617 103 QIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN 182 (467)
T ss_pred HHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC
Confidence 999999988 7887775443 2222 234566788777765321 122357899999999874
Q ss_pred CceEEEEeCCCC-CcccccCHHHHHHHHHHHHHcCcEEEEcccccc--c--------ccCCCCCCCcc-c-cCCCCCeEE
Q 014603 183 NTVALVIINPGN-PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH--L--------AFGNTPFVPMG-V-FGSIVPVLT 249 (422)
Q Consensus 183 ~~~~i~i~~p~n-ptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~--~--------~~~~~~~~~~~-~-~~~~~~~i~ 249 (422)
+...+...-.+| -.|..+|.+.++++.++|++||+.++.|.+--. . .+.+.+...+. . +...| .+
T Consensus 183 ~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aD--sv 260 (467)
T TIGR02617 183 NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYAD--ML 260 (467)
T ss_pred CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCC--EE
Confidence 222222111123 467899999999999999999999999997432 1 12232211110 0 01111 55
Q ss_pred EecCccccCCC-CceeEEEEeeCCCCcccchhHHHHHHhhhh------hccCcchHHHHHHHHHHhhc-hHHHHHHHHHH
Q 014603 250 LGSISKRWIVP-GWRLGWLVTSDPNGILQDSGIVDSIKSFLN------ISSDPATFIQGAVPQILEKT-EEEFFSKITDI 321 (422)
Q Consensus 250 i~s~sK~~~~~-G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~ 321 (422)
..|+||.++.| | |++++++.. ++ ++.++++...- +.++.+.-.+.|++.-|++. .++++..+..+
T Consensus 261 t~slsKglgApvG---g~Lag~d~~-~~---~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~q 333 (467)
T TIGR02617 261 AMSAKKDAMVPMG---GLLCFKDDS-FF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQ 333 (467)
T ss_pred EEEcCCCCCCccc---ceEEecchh-HH---HHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 66899998766 4 566665410 00 34455444321 22344555566666566653 25667766666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEec----CcccccCCCCHHHHHHHHHHhcCeEEec-CCC-CCC------
Q 014603 322 LRETADICCDRLKEIPCITCPKKPEGSMFVMVKL----NYSLLEGINSDMEFALKLAKEESVIVLP-GIT-VGL------ 389 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~-~~~------ 389 (422)
++.+.+ .|++. |+.++ . .+|.-+++.. |.-..... .+..+..+|-.+.||--.- |+. ++.
T Consensus 334 v~yl~~----~L~~~-Gvpi~-~-~Gghav~iDa~~~lphip~~~f-pa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~ 405 (467)
T TIGR02617 334 VQYLVN----GLEEI-GVVCQ-Q-AGGHAAFVDAGKLLPHIPADQF-PAHALACELYKVAGIRAVEIGSLLLGRDPKTGK 405 (467)
T ss_pred HHHHHH----HHHhC-CCcEE-e-cCccEEEEehhhhCCCCChhhC-cHHHHHHHHHHHcCcceEeecceecccCCCCCc
Confidence 655554 44544 77644 4 5565555542 21111111 3556666666677876332 222 111
Q ss_pred -----CCeEEEEec---cChHHHHHHHHHHHHHHHH
Q 014603 390 -----KDWLRITFA---VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 390 -----~~~iRis~~---~~~~~l~~~~~~l~~~~~~ 417 (422)
-..+|+++. .+.+.++..++++..+.++
T Consensus 406 ~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred cCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 257999997 4789999999999887654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-14 Score=125.02 Aligned_cols=341 Identities=15% Similarity=0.150 Sum_probs=215.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|.+++||++.+ +.++.-.+++.+.....+..... .-|+...-+.++++.||+|++ .++-++.
T Consensus 92 ~G~~~~N~aS~N---fL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G--------~E~aivY 160 (467)
T KOG1358|consen 92 DGKDVLNFASAN---FLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG--------TEDAIVY 160 (467)
T ss_pred cCceeecccchh---hhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC--------Ccceeee
Confidence 588899998877 44566778888888887776322 236666678899999999993 3455555
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------------Cc
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------------NT 184 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------------~~ 184 (422)
+-+.++++.++.+++++||.|.+.+-...+.....+...-.++++..+ |.+.++..+.+ .+
T Consensus 161 s~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~ 233 (467)
T KOG1358|consen 161 SYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALT 233 (467)
T ss_pred ccccchhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccccccc
Confidence 666778888899999999999999998888888888777777776542 44555443321 22
Q ss_pred eEEEEeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCCccccCCCCCeEEEecCccccCCCC
Q 014603 185 VALVIINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGSIVPVLTLGSISKRWIVPG 261 (422)
Q Consensus 185 ~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G 261 (422)
+..++... .-++|.+. ++.+|+++..+|...+|+||.++.... +|.+.......+..+-.++++|+.-.++..|
T Consensus 234 Rrfiv~EGl~~N~g~i~---pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G 310 (467)
T KOG1358|consen 234 RRFIVVEGLYANTGDIC---PLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG 310 (467)
T ss_pred eEEEEEEeeccCCCccc---ccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC
Confidence 44555555 55699885 477778888899999999999886444 3444444334443333488888888866666
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014603 262 WRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 262 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 340 (422)
|+.+++.- . ...+++......+ ...++....++..++.. .++-.+..+.++.....+.+.|....++.
T Consensus 311 ---gFc~G~~~--i----~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i--~~~~p~~~~~L~~k~~~~H~~l~~~s~~~ 379 (467)
T KOG1358|consen 311 ---GFCAGKSF--I----ADHQRLSGSGYCFSASLPPYLAGAAIKAILI--EEWNPEIVQPLRAKVAKFHAALSSNSGFI 379 (467)
T ss_pred ---ceeeccee--e----EeeeeccccceeeeccCchhhhhhHHHHHHH--HhhCcchhhhhhccccccchhhhcCCceE
Confidence 67666321 1 1123333333222 23344444555555543 23333455566666666777777665555
Q ss_pred CCCCCCCceEEEEecCcccccCCCCH----HHHHHHHHHhcCeEEecCCCC------CCCCeEEEEec--cChHHHHHHH
Q 014603 341 CPKKPEGSMFVMVKLNYSLLEGINSD----MEFALKLAKEESVIVLPGITV------GLKDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 341 ~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~gi~v~~g~~~------~~~~~iRis~~--~~~~~l~~~~ 408 (422)
+...+.+ ....+.+...... ..+. +++++..+.+ ++.+...... -.+..+||++. .++++++++.
T Consensus 380 v~~~~~S-Pi~hl~l~~~~~s-~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~ 456 (467)
T KOG1358|consen 380 VSGSPES-PIIHLQLERSYGS-REKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAA 456 (467)
T ss_pred EecCcCC-ceeeeeecccccc-hHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHH
Confidence 3434443 3444555432110 0011 2344444444 7777654322 22567999997 7899999999
Q ss_pred HHHHHHHHHh
Q 014603 409 GRMKAFYDRH 418 (422)
Q Consensus 409 ~~l~~~~~~~ 418 (422)
..|++....+
T Consensus 457 ~~ik~~~~~~ 466 (467)
T KOG1358|consen 457 ELIKEVASAV 466 (467)
T ss_pred HHHHHHHHhh
Confidence 9999876543
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-13 Score=132.05 Aligned_cols=303 Identities=13% Similarity=0.061 Sum_probs=180.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc
Q 014603 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (422)
+...+.+.++.+|+.+++ ....++++|+|.++.+++.+++.+||.||++++||.+........|+.++++...
T Consensus 193 ~~G~i~eAe~~AA~~fgA-------d~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~ 265 (714)
T PRK15400 193 HSGPHKEAEEYIARVFNA-------DRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPT 265 (714)
T ss_pred CChHHHHHHHHHHHHhCC-------CcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEeccc
Confidence 444467888888888832 3466789999999999999999999999999999999888889999999887643
Q ss_pred CCCCc----ccC-----HHHHHHhhcCC-----ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccc-c
Q 014603 165 PAKGW----EVD-----LDAVEALADEN-----TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHL-A 229 (422)
Q Consensus 165 ~~~~~----~~d-----~~~l~~~~~~~-----~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~-~ 229 (422)
. +.+ .++ .+.+++.+..+ +..+++++|+. -|+++ ++++|+++|+.++ |++|||++.+ .
T Consensus 266 r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~y---d~~~I~~~~~~~~--ilvDEAwgah~~ 338 (714)
T PRK15400 266 R-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLY---NTDFIKKTLDVKS--IHFDSAWVPYTN 338 (714)
T ss_pred c-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEec---CHHHHHHHhCCCC--EEEEccchhhhc
Confidence 2 122 234 78888877542 22688999965 88986 4677777777776 6899998754 2
Q ss_pred cCCCC--CCCccccC-CCCCeEEEecCccccCCCCceeEEE-EeeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHH
Q 014603 230 FGNTP--FVPMGVFG-SIVPVLTLGSISKRWIVPGWRLGWL-VTSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAV 303 (422)
Q Consensus 230 ~~~~~--~~~~~~~~-~~~~~i~i~s~sK~~~~~G~r~G~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~ 303 (422)
|.... ..++.... .++.++++.|.+|. ++++..+.+ ...+ . .+ .++++..... +.+|+.+..+.+
T Consensus 339 F~p~~~~~sam~~ga~~~~~i~vtQStHKt--L~alTQaS~LHvkg-~--vd----~~~~n~a~~m~~STSPsY~l~ASL 409 (714)
T PRK15400 339 FSPIYEGKCGMSGGRVEGKVIYETQSTHKL--LAAFSQASMIHVKG-D--VN----EETFNEAYMMHTTTSPHYGIVAST 409 (714)
T ss_pred cCcccCCcChhhcCCCCCCceEEEEchhhc--ccchhHHhHHHHcC-C--CC----HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 33211 11222111 12456999999998 456555543 3322 1 11 2444444332 335555554444
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCCCC-----------------------------Cc
Q 014603 304 PQILEKTEEEFFSKITDILRETADICCDRLKEIPC------ITCPKKPE-----------------------------GS 348 (422)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~~-----------------------------~g 348 (422)
..+........-++..+...+....+++.|.++++ +.++ .|+ +.
T Consensus 410 D~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~-~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP 488 (714)
T PRK15400 410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVW-QPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP 488 (714)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEec-ChhhcccchhcccCccccccCcccccccccccCC
Confidence 44332211112233444455555556666655544 3322 111 00
Q ss_pred eEEEEecCcccc-----cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEE--EEeccChHHHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYSLL-----EGINSDMEFALKLAKEESVIVLPGITVGLKDWLR--ITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 349 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR--is~~~~~~~l~~~~~~l~~~~~ 416 (422)
.=+.+.++.-.. +....+..+ ...|+++||.+.-... ..+- ++++.++++++.+++.|.++-+
T Consensus 489 ~Klti~tpgi~~~g~~~~~Gipg~~v-~~~L~e~gI~~E~~d~----~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 489 IKVTLLTPGMKKDGTMSDFGIPASIV-AKYLDEHGIVVEKTGP----YNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred ceEEEEeCCCCCCccccccCCCHHHH-HHHHHHcCCEEEecCC----CeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 111222221000 011134444 4445888999876542 3334 4445788999999998887644
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-12 Score=127.44 Aligned_cols=306 Identities=14% Similarity=0.050 Sum_probs=176.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc
Q 014603 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (422)
+...+.+.++.+|+.+++ ....++++|+|.++.+++.+++.+||.||++++||.+........|+.++++.-.
T Consensus 193 ~~G~i~eAe~~aA~~fgA-------d~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~ 265 (713)
T PRK15399 193 HTGPHLEAEEYIARTFGA-------EQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPT 265 (713)
T ss_pred CChHHHHHHHHHHHHhCC-------CcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEeccc
Confidence 444567888888888842 3466789999999999999999999999999999999888888999998887633
Q ss_pred CCC-C--cccCH-----HHHHHhhcC-----CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEE-EEcccccccc-
Q 014603 165 PAK-G--WEVDL-----DAVEALADE-----NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMV-IADEVYDHLA- 229 (422)
Q Consensus 165 ~~~-~--~~~d~-----~~l~~~~~~-----~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~l-i~D~~~~~~~- 229 (422)
.+. + ..++. +.+++.+.+ +++++++++|+. -|+++. +++|+++| |+.+ ++|||++.+.
T Consensus 266 ~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~ 338 (713)
T PRK15399 266 RNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTH 338 (713)
T ss_pred ccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhh
Confidence 211 1 22344 788887753 236788999965 899965 55566666 5655 6999997532
Q ss_pred cCCCC--CCCcccc-CCCCCeEEEecCccccCCCCceeEE-EEeeCCCCcccchhHHHHHHhhhh--hccCcchHHHHHH
Q 014603 230 FGNTP--FVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGW-LVTSDPNGILQDSGIVDSIKSFLN--ISSDPATFIQGAV 303 (422)
Q Consensus 230 ~~~~~--~~~~~~~-~~~~~~i~i~s~sK~~~~~G~r~G~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~ 303 (422)
|.... ..++... +.|..++++.|.+|. ++++..+. +...+ . .+ .++++.... .+.+|+.+..+.+
T Consensus 339 F~p~~~~~sam~~~~~aD~~i~~tQStHKt--L~alTQaS~iHvk~-~--vd----~~~~n~a~~m~~STSPsY~LmASL 409 (713)
T PRK15399 339 FHPIYQGKSGMSGERVPGKVIFETQSTHKM--LAAFSQASLIHIKG-E--YD----EETFNEAFMMHTSTSPSYPIVASV 409 (713)
T ss_pred cCcccCCcChhhCCCCCCeeeeeeeehhcc--ccccchheeeeecC-C--CC----HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 33211 1122211 233345778999998 46665554 44432 1 21 244444433 2335555555444
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCCC-------------C----------------Cc
Q 014603 304 PQILEKTEEEFFSKITDILRETADICCDRLKEIPC------ITCPKKP-------------E----------------GS 348 (422)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~-------------~----------------~g 348 (422)
..+........-++..+...+....+++.+.++.+ +.++ .| . +.
T Consensus 410 D~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~-~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP 488 (713)
T PRK15399 410 ETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIW-QPENVDEAECWPVAPGEQWHGFKDADADHMFLDP 488 (713)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeec-CccccCCccceecCCCcccccccccccccccCCC
Confidence 44332211112233334444444445555544332 2212 11 0 01
Q ss_pred eEEEEecCcc----cc-cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYS----LL-EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 349 ~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
.=+.+.++.- .. +.......+... |+++||.+.-...+. -.+-++++.++++++.+++.|.++-+.
T Consensus 489 ~KltI~t~g~~~~g~~~~~Gi~g~~l~~~-L~e~gI~~E~~d~~~--vL~l~s~g~t~~~~~~L~~aL~~f~~~ 559 (713)
T PRK15399 489 VKVTILTPGMDEQGNMSEEGIPAALVAKF-LDERGIVVEKTGPYN--LLFLFSIGIDKTKAMGLLRGLTEFKRA 559 (713)
T ss_pred ceEEEEecCcccccccccCCCCHHHHHHH-HHHcCCEEEecCCCe--EEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 1112222210 00 111234445444 578899987654311 123344457889999999988876443
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-13 Score=124.01 Aligned_cols=269 Identities=18% Similarity=0.147 Sum_probs=169.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-----CCCEEEecCHHHHHHHHHHHhcC--------C
Q 014603 67 AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-----PDDVYLTLGCTQAIEVILTVLAR--------P 133 (422)
Q Consensus 67 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-----~~~i~~~~g~~~a~~~~~~~l~~--------~ 133 (422)
+-+.+...++. ....|...+...++++.+.+++.+.+|.+.. ...=++|+|||+++..++.+..+ .
T Consensus 56 ~~~~l~~~~n~-n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~ 134 (373)
T PF00282_consen 56 LADLLASALNQ-NGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAK 134 (373)
T ss_dssp HHHHHHHHHT--BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcc-cccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc
Confidence 34444555543 2334444445778999999999998876621 23567899999999877654321 1
Q ss_pred C-----C-EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC---C--ce-EEEEeCCCCCcccccC
Q 014603 134 G-----A-NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE---N--TV-ALVIINPGNPCGNVYT 201 (422)
Q Consensus 134 g-----d-~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~--~~-~i~i~~p~nptG~~~~ 201 (422)
| + .|++.+-+|+++..++...|++++.+|.++ ++.+|++.|++.+.+ + +. +++.+.++..+|.+
T Consensus 135 ~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~-- 210 (373)
T PF00282_consen 135 GVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI-- 210 (373)
T ss_dssp TTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB--
T ss_pred ccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccc--
Confidence 1 2 567777799999999999999999999875 457999999887643 2 23 45566678899999
Q ss_pred HHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchh
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+++++|.++|+++|+++++|.+|++..+ ..........++.. .-+..+++|++ .....+|+++.+++..
T Consensus 211 -D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~a--dSit~d~HK~l-~~P~~~~~~l~r~~~~------ 280 (373)
T PF00282_consen 211 -DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERA--DSITIDPHKWL-GVPYGCGVLLVRDKSD------ 280 (373)
T ss_dssp --SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGE--SEEEEETTTTT-S-SSS-EEEEESSGGG------
T ss_pred -cCHHHHhhhccccceeeeecccccccccccccccccccccccc--cccccchhhhh-cCCccceeEEeecccc------
Confidence 8999999999999999999999987322 11111111222211 14455899995 4556799999976421
Q ss_pred HHHHHH---hhh--------------hhccCcch-HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014603 281 IVDSIK---SFL--------------NISSDPAT-FIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP 342 (422)
Q Consensus 281 ~~~~~~---~~~--------------~~~~~~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 342 (422)
+...+. .+. ..+...+. .....+-..|+....+.+.+..++..+.++++.+.|++.+.++++
T Consensus 281 l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~ 360 (373)
T PF00282_consen 281 LRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELV 360 (373)
T ss_dssp HHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred hHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 111110 000 01112222 122222233444456788889999999999999999999888866
Q ss_pred CCCCCceE
Q 014603 343 KKPEGSMF 350 (422)
Q Consensus 343 ~~~~~g~~ 350 (422)
..|.-+..
T Consensus 361 ~~~~~~~v 368 (373)
T PF00282_consen 361 NEPDLNIV 368 (373)
T ss_dssp STTSSSEE
T ss_pred cCCCceEE
Confidence 55554433
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=133.74 Aligned_cols=298 Identities=16% Similarity=0.134 Sum_probs=188.0
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCC-----C----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-c
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTV-----G----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-A 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~ 131 (422)
..|+.+.+++.+... ....|.|.+ | +.+++..|++++ +.+++++.++.++|++.++++.++ .
T Consensus 116 ~~P~~v~~~i~~~~~--~~TaytPYqaEisQG~lqal~~~Qt~ia~Lt------G~~~anaSL~d~aTAaaea~~~a~~~ 187 (993)
T PLN02414 116 HVPPVILRNILENPG--WYTQYTPYQAEIAQGRLESLLNYQTMITDLT------GLPMSNASLLDEGTAAAEAMAMCNNI 187 (993)
T ss_pred cCCHHHHHHHHhChH--HHhhcCCCchHHHHHHHHHHHHHHHHHHHHh------CCChhhEeecCChHHHHHHHHHHHhc
Confidence 356677677765432 123455432 2 456778888888 678999999999999999988776 3
Q ss_pred CC--CCEEEecCCCccchHH----HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 132 RP--GANILLPRPGFPYYEA----RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 132 ~~--gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
.+ +++|++++..|+.+.. .++..|++++.++.... + ...+....+++..|+ .+|.+ .++
T Consensus 188 ~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~~v~~vlvq~P~-~~G~v---~dv 252 (993)
T PLN02414 188 LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSGDVCGVLVQYPA-TDGEV---LDY 252 (993)
T ss_pred ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccCceEEEEEecCC-CCeEE---cCH
Confidence 43 3789999999987644 34456888888775321 1 112233344444444 49999 578
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc---CCCCceeEEEEeeCCCCcccchhHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW---IVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~---~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
++|+++|+++|+++++ .++.. ...+ ..+...++.| +++++..|+. |..|.+.|++.+++ ++.
T Consensus 253 ~~I~~~ah~~GaL~iV-aad~l-al~~--l~~pge~GAD---i~vgsgqKwg~P~G~GGP~aGflavr~--------~~~ 317 (993)
T PLN02414 253 AEFVKNAHANGVKVVM-ATDLL-ALTM--LKPPGEWGAD---IVVGSAQRFGVPMGYGGPHAAFLATSQ--------EYK 317 (993)
T ss_pred HHHHHHHHHcCCEEEE-EECHH-HhcC--CCCHhhccCc---EEEECCCccccCCCCCCCCeeEEEECH--------HHH
Confidence 9999999999999999 44432 1111 1134566665 8899999985 12455689998864 222
Q ss_pred HHHHh-------------------------hhhhccCcchHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHHHHHH
Q 014603 283 DSIKS-------------------------FLNISSDPATFIQGAVPQILE-----KTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 283 ~~~~~-------------------------~~~~~~~~~~~~~~a~~~~l~-----~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
+.+.. .+.-..+.+.-...++.+.+. .....++++..+++.++..++.+.
T Consensus 318 r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~ 397 (993)
T PLN02414 318 RLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAG 397 (993)
T ss_pred hhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 22210 000012333322223333222 222466888889999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~ 410 (422)
|+.. ++.+...+..+ .+.++++ +..++..++ .++||.+.... .+.+|+|++ ++++||+.+++.
T Consensus 398 L~~~-G~~~~~~~~f~-~vt~~~~--------~~~~v~~~L-~~~gI~l~~~~----~~~lrvs~~e~~T~edId~L~~~ 462 (993)
T PLN02414 398 LKKL-GFQVQSLPFFD-TVKVKCS--------DADAIADAA-AKVGINLRVVD----ANTVTVSFDETTTLEDVDKLFKV 462 (993)
T ss_pred Hhhc-CCccCCCCCcC-eEEEecC--------CHHHHHHHH-HHCCCeeEEec----CCeEEEEeeccCCHHHHHHHHHH
Confidence 9885 67744222222 2233332 356666666 55699776432 467999998 789999999999
Q ss_pred HH
Q 014603 411 MK 412 (422)
Q Consensus 411 l~ 412 (422)
|.
T Consensus 463 l~ 464 (993)
T PLN02414 463 FA 464 (993)
T ss_pred Hc
Confidence 86
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-12 Score=109.26 Aligned_cols=340 Identities=14% Similarity=0.076 Sum_probs=214.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC---CCC-CCCCCCC-HHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR---FNC-YSSTVGI-LPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~-y~~~~g~-~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
.+.++|.|+.+.....+. ....+..++..+...... .+. -.+-..+ ..+-.+++-++ +..+.+++++.
T Consensus 28 lp~~viyLdgnSLGa~p~-~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLi------GA~~~Evvv~d 100 (407)
T COG3844 28 LPGGVIYLDGNSLGARPR-AVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLI------GARAGEVVVTD 100 (407)
T ss_pred CCCCeEEeeccccccCch-HHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhh------cCCCCceEEeC
Confidence 578899999887442110 012223333333333321 111 1111111 23344555555 45778999999
Q ss_pred CHHHHHHHHHHHhc--CCCCEEEecCCCccch-----HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEe
Q 014603 118 GCTQAIEVILTVLA--RPGANILLPRPGFPYY-----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII 190 (422)
Q Consensus 118 g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 190 (422)
+++-.++.++.+.. ++|++|++++-.-.+. ...+...+... . -...+.++.+++.+++++.+++++
T Consensus 101 tts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~---~----~~~~~~P~~~~~~~~dd~AvV~L~ 173 (407)
T COG3844 101 TTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGY---D----LEGVIAPRALEEAITDDVAVVLLS 173 (407)
T ss_pred CcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccc---c----ceeeeChHHHHHhhccceEEEEec
Confidence 99999998887764 3578888876544332 22333333221 1 112346778999999899889999
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEe
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVT 269 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~ 269 (422)
+.+.-||..+ ++.+|-++++++|++++.|-+|+. |.-+..+..-+.| +-|++..|.+ ++||-..|..+.
T Consensus 174 ~V~y~TGql~---dm~aiT~~AH~~galv~wDLAHsa----Gavp~~Lh~~gaD---faigcsyKYLNgGPGapa~l~v~ 243 (407)
T COG3844 174 HVNYKTGQLL---DMRAITALAHQHGALVGWDLAHSA----GAVPVDLHAAGAD---FAIGCSYKYLNGGPGAPAGLFVA 243 (407)
T ss_pred ccccccccee---eHHHHHHHHHhcCceEEeehhccc----CCcceeecccCCC---eeeeeeceeccCCCCCceeEEec
Confidence 9999999995 788999999999999999999987 4334445555554 8899999988 457766655554
Q ss_pred eCCCCcccchhHHHHHH------------hh----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 270 SDPNGILQDSGIVDSIK------------SF----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
+++.+.. -+.+...+. .. ....++++..+..++..+|+...+-.+.+++++--.+.+++.+.+
T Consensus 244 ~~h~e~~-~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLv 322 (407)
T COG3844 244 PRHRERS-WPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELV 322 (407)
T ss_pred ccccccc-ccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHH
Confidence 4322111 111111111 00 012346666777777777876555558888888888889998888
Q ss_pred hcC-C--CCCCCCCCCC----ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHH
Q 014603 334 KEI-P--CITCPKKPEG----SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSA 403 (422)
Q Consensus 334 ~~~-~--~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~ 403 (422)
+.. + +++ +.+|.+ |..+.+..| ...+++..| -++||.. .|..++.+|+.++ ++-+|
T Consensus 323 Ea~~~~~~l~-l~tPr~~~~rGsqvS~~hp--------~~~~V~qaL-i~rGVig----D~R~P~vlRfgftPlY~~~~D 388 (407)
T COG3844 323 EARCEYYGLT-LVTPRAHEERGSQVSLYHP--------HGYQVMQAL-IDRGVIG----DFREPDVLRFGFTPLYVSFVD 388 (407)
T ss_pred HhccccCCcE-EeccchhhhccceeeEecC--------cHHHHHHHH-HHcCccc----cccCCCeeeecCccceechhH
Confidence 764 2 344 224432 456666565 356666666 5569874 3445789999998 67899
Q ss_pred HHHHHHHHHHHHHHhccc
Q 014603 404 LEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 404 l~~~~~~l~~~~~~~~~~ 421 (422)
+=.+++.|.++++...-|
T Consensus 389 Vw~AV~~L~evL~t~a~~ 406 (407)
T COG3844 389 VWDAVDALEEVLDTLAWQ 406 (407)
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 999999999999876544
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-13 Score=114.82 Aligned_cols=356 Identities=13% Similarity=0.093 Sum_probs=210.8
Q ss_pred HHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCE
Q 014603 35 LLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CYSSTVGILPARRAIADYLNRDLPYKLSPDDV 113 (422)
Q Consensus 35 ~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i 113 (422)
-+++.....+..++|-=++... .-..+|+|.+|...++.....+ ++-. .++- ..|+.+....+ .-+-+
T Consensus 37 q~QYmfDE~g~~yLDCInNVaH---vghchp~VV~A~~kQmat~~tN~RFlh----d~lv-~cA~~l~stlP---eLsvc 105 (452)
T KOG1403|consen 37 QGQYMFDEEGTRYLDCINNVAH---VGHCHPEVVRAGAKQMATISTNNRFLH----DELV-QCARTLTSTLP---ELSVC 105 (452)
T ss_pred ccceeeccCcccHHHHhhhhhh---cccCCHHHHHHHHHHHhHhcccchhhH----HHHH-HHHHHHhhcCC---CceEE
Confidence 3344433345555543333222 1256899999999888653222 2221 2332 23333333222 24567
Q ss_pred EEecCHHHHHHHHHHHh---cCCCCEEEecCCCccchHHHHhhC-------C---CeEEEeeccCCCC------------
Q 014603 114 YLTLGCTQAIEVILTVL---ARPGANILLPRPGFPYYEARATHS-------H---LEVRHFDLLPAKG------------ 168 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~~~~~~~~~-------g---~~~~~~~~~~~~~------------ 168 (422)
+|+++|++|+.++++.. ++..|.| +.+..|++........ | .++.++.+.|..+
T Consensus 106 ~F~NSGSEANDLALRLAR~ftkhqDvI-tldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~ 184 (452)
T KOG1403|consen 106 FFVNSGSEANDLALRLARNFTKHQDVI-TLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYP 184 (452)
T ss_pred EEecCCchhhHHHHHHHHhhcccCceE-EEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCC
Confidence 89999999999998764 4555554 4455555432211100 1 1112222211100
Q ss_pred ----cccCHHHHHHhh----cCC-ceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC
Q 014603 169 ----WEVDLDAVEALA----DEN-TVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 169 ----~~~d~~~l~~~~----~~~-~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
...-.+.+++.+ .++ ..+.++... +.-.|.+ +|....+++++..+.+|-+.|.||++.++.+-|..++.
T Consensus 185 ~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWa 264 (452)
T KOG1403|consen 185 DADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWA 264 (452)
T ss_pred cccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhh
Confidence 001112333333 222 233344444 6667765 45566899999999999999999999999888888877
Q ss_pred ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhchHHH
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
+..++.-++++.+ .|. ++.|.+++.+++. +++.+.+.... ..+.+.++++.+++.+.|+...++.
T Consensus 265 fq~y~fiPDIVtm---gKp-mGNGhPVa~Vatt--------keIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~ 332 (452)
T KOG1403|consen 265 FQTYNFIPDIVTM---GKP-MGNGHPVAAVATT--------KEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDEN 332 (452)
T ss_pred hhhhccccchhee---ccc-CCCCCeeeEEecc--------HHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhh
Confidence 7766654444554 599 6899999999885 57888887633 1245789999999999998766666
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCcccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCC
Q 014603 315 FSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGLK 390 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 390 (422)
+.+...++.+..+.+...++. ++.+. . ...-|.|+.+.+-.... +....+...+.++-+.++|++..-.. + .
T Consensus 333 Lq~ha~~vG~~L~~lL~~~k~kh~~IG-D-vRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGP-h-~ 408 (452)
T KOG1403|consen 333 LQEHAQQVGEKLEVLLRRLKQKHECIG-D-VRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGP-H-R 408 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccee-c-cccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCC-C-C
Confidence 777777666666666655554 33332 1 12336777776532111 11113444566676777888865321 1 4
Q ss_pred CeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 391 DWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 391 ~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.+.|-+. .++++.++.+..|.+++..+
T Consensus 409 NilKiKPPmCFneena~e~v~~ld~iLT~m 438 (452)
T KOG1403|consen 409 NILKIKPPMCFNEENADEFVLGLDEILTVM 438 (452)
T ss_pred ceeecCCCcccChhhHHHHHHHHHHHHHHH
Confidence 66777664 57888888888888877644
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=112.66 Aligned_cols=306 Identities=17% Similarity=0.144 Sum_probs=197.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh---c-C-CC---CEEEecCCCccchHHHHhhCCCeE
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL---A-R-PG---ANILLPRPGFPYYEARATHSHLEV 158 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~-~-~g---d~Vl~~~~~~~~~~~~~~~~g~~~ 158 (422)
++..+++.++..++...++-+ ....=..|.|+|+++.++-... . . .| ..++++...+.++..++..+++++
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l 194 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVEL 194 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEE
Confidence 456778888877777655423 1122256788888855443321 1 1 22 478889999999999999999999
Q ss_pred EEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH-cCcEEEEcccccccccCCCCCCC
Q 014603 159 RHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK-LGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 159 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~-~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
+.+++++ +++.+|+..+.+.+++++..++.+-|+.|+|.. +++++|.++..+ +++.+.+|.+-++|.-. -....
T Consensus 195 ~~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p-~~~~~ 269 (491)
T KOG1383|consen 195 REVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINP-AGYLN 269 (491)
T ss_pred Eeeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCcccccc-ccccC
Confidence 9999976 678999999999999999999999999999999 999999999988 99999999998876642 01111
Q ss_pred ccccCCC-CCe-EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh----------hhhhc-cCcc--hHHHHH
Q 014603 238 MGVFGSI-VPV-LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS----------FLNIS-SDPA--TFIQGA 302 (422)
Q Consensus 238 ~~~~~~~-~~~-i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~--~~~~~a 302 (422)
...++.. +.| -+-.+.+|. |+.--.++|++-+++... ..++.- ..... +.+. ...|++
T Consensus 270 ~~~fdFr~p~V~Sisa~~HKY-Gl~~~G~~~vl~r~k~~~------~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa 342 (491)
T KOG1383|consen 270 EEEFDFRVPGVTSISADGHKY-GLAPAGSSWVLYRNKELL------PHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWA 342 (491)
T ss_pred ccccccCCCCceeEeecccee-eeeecCcEEEEEcccccc------cceEEEeccccCccccCcccccCCcccHHHHHHH
Confidence 1122221 122 222355675 654444899988764321 122110 00011 1111 122333
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe
Q 014603 303 VPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 382 (422)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 382 (422)
. .+ ...++++.+..+.+.+....+++.++++.++.++..|.-+ + +-+....+ +-.++ ..+++++|..+.
T Consensus 343 ~--~~-~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs-~--~~~~s~~~----~i~el-sd~l~~~GW~ln 411 (491)
T KOG1383|consen 343 A--LM-SLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVS-F--ILFGSNDV----NIFEL-SDLLRKKGWILN 411 (491)
T ss_pred H--HH-HhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEE-E--EEccCCcc----chhhh-hHHHHhcCcCcc
Confidence 2 22 2345677778888999999999999999888855454422 2 22222211 23344 445677788775
Q ss_pred cCCCCCCCCeEEEEec---cChHHHHHHHHHHHHHHHHhc
Q 014603 383 PGITVGLKDWLRITFA---VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 383 ~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.-.. +..+-+++. ..++-.++++..|+++++++.
T Consensus 412 alq~---P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~ 448 (491)
T KOG1383|consen 412 ALQF---PAAIHICVTRVHAREDVADRFVADIRKVVEELK 448 (491)
T ss_pred ccCC---CCceEEEEEeeeccHHHHHHHHHHHHHHHHHHH
Confidence 4332 224555554 344556888888888888764
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-11 Score=111.81 Aligned_cols=236 Identities=15% Similarity=0.147 Sum_probs=151.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (422)
..+.+.++.+|+.+++ ....++++|++.|+..++.+++.+||.||++.+||.+........|+.++++.-..+
T Consensus 70 G~i~eAqe~aA~~fgA-------d~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~n 142 (557)
T COG1982 70 GPIKEAQELAARVFGA-------DHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRN 142 (557)
T ss_pred ccHHHHHHHHHHHhCC-------CceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCC
Confidence 4467888888888842 236788999999999999999999999999999999988888889988877754332
Q ss_pred C----CcccCHHHHHHhhcC--Cc-eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc
Q 014603 167 K----GWEVDLDAVEALADE--NT-VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG 239 (422)
Q Consensus 167 ~----~~~~d~~~l~~~~~~--~~-~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~ 239 (422)
. -.+++.+.+++.+.+ .. +++++++|+. -|+++. +++|.+.++.+++++.+|+++.... +-+...+-.
T Consensus 143 p~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~-~~~~~l~~~ 217 (557)
T COG1982 143 PLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHF-DFSPMLPES 217 (557)
T ss_pred ccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcccc-cccccCcch
Confidence 2 146789999886533 33 7788999987 788864 6677777779999999999987532 111111111
Q ss_pred ccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHH---HhhchHH
Q 014603 240 VFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQI---LEKTEEE 313 (422)
Q Consensus 240 ~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~---l~~~~~~ 313 (422)
.. ....++++.|.+|.+ +++.. .++...+. ... -.+++...... +.+|+....+.+..+ .......
T Consensus 218 ~~-~~~~~~~tqS~HK~l--~alSQaS~iHv~~~-~~~----~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~ 289 (557)
T COG1982 218 AL-NGGADFVTQSTHKLL--AALSQASMIHVKDG-RAV----NHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGRE 289 (557)
T ss_pred hh-hcCceEEEechhhhh--hhhhhhHHHhhCCC-ccC----CHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhHH
Confidence 11 123468999999983 44444 44554432 111 23445444432 234444444433332 1111122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCP 342 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 342 (422)
..++..+..-+.++.+++...+++++.++
T Consensus 290 l~~~~~~~~i~~r~~~~~~~~~~~~~~~~ 318 (557)
T COG1982 290 LWQEVIDEAIDFRKALRRLINEIGFFPVL 318 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence 23333455556666666666666555544
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-11 Score=103.93 Aligned_cols=332 Identities=14% Similarity=0.121 Sum_probs=203.3
Q ss_pred CcHHHHHHHHHHhhCCCCCCC------CCCCCCHHHHHHHHHHHhhcCCCCCCCC--CEEE-ecCHHHHHHHHHHHhcCC
Q 014603 63 TASVAVDAIVHSVRSARFNCY------SSTVGILPARRAIADYLNRDLPYKLSPD--DVYL-TLGCTQAIEVILTVLARP 133 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~y------~~~~g~~~lr~~ia~~l~~~~~~~~~~~--~i~~-~~g~~~a~~~~~~~l~~~ 133 (422)
.+..|.+|+-..+.+...-+| +-...+.+++..+.+..-+.++ .+++ .|-+ .-+++.|+.++..++++|
T Consensus 52 ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~--ldp~kWGVNVQp~SGSPANfavYtall~P 129 (477)
T KOG2467|consen 52 TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFG--LDPEKWGVNVQPYSGSPANFAVYTALLKP 129 (477)
T ss_pred hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhC--CCHHHCceeeccCCCCchhhHHHhhhcCC
Confidence 457888998888876433333 3334455555544444433343 3333 3322 235677899999999999
Q ss_pred CCEEEe---cCCCc--cchHHHHhhCCCeE-----EEeeccCCCCcccCHHHHHHhhc-CCceEEEEeCCCCCcccccCH
Q 014603 134 GANILL---PRPGF--PYYEARATHSHLEV-----RHFDLLPAKGWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 134 gd~Vl~---~~~~~--~~~~~~~~~~g~~~-----~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~~ 202 (422)
+++|.- |+.+| ++|..-.+...+.- -++.+++.. .-+|-|.||+... =++++++ +- +..|++
T Consensus 130 h~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~T-G~IDYD~Le~~A~~frPk~ii-aG-----~SaY~R 202 (477)
T KOG2467|consen 130 HERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPST-GYIDYDKLEKTATLFRPKLII-AG-----TSAYSR 202 (477)
T ss_pred CCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCC-CceehHHHHHHHHhcCCcEEE-ec-----cccchh
Confidence 998874 44444 33322112211111 123344443 4579999988543 3666665 22 223333
Q ss_pred H-HHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCccc---
Q 014603 203 Q-HLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ--- 277 (422)
Q Consensus 203 ~-~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~--- 277 (422)
. |..++.++|.+.|.+++.|.+|- ++.-.+..+.++...+ |+..+.+|+ +.|.|.|.+..+..-.-.+
T Consensus 203 ~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~D-----iVTTTTHKs--LRGPRg~mIFyRkGvk~~~~k~ 275 (477)
T KOG2467|consen 203 LIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCD-----IVTTTTHKS--LRGPRGAMIFYRKGVKSIKPKQ 275 (477)
T ss_pred hccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccc-----eeecccccc--ccCCcceeEEEeccCCcCCCCC
Confidence 2 46888888889999999999984 4444454444443322 788899998 5788889888764211110
Q ss_pred ----chhHHHHHHhhh--hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEE
Q 014603 278 ----DSGIVDSIKSFL--NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFV 351 (422)
Q Consensus 278 ----~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 351 (422)
--++.+++.... ...++|......+++.+|.+.....+....+++.++.+.+.++|.+. |..++....+...+
T Consensus 276 g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlv 354 (477)
T KOG2467|consen 276 GKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLV 354 (477)
T ss_pred CCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEE
Confidence 012334443322 23457777778888888887666778888899999999999999998 77755444445556
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-----CCeEEEEec--c----ChHHHHHHHHHHHHHHH
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFA--V----EPSALEDGLGRMKAFYD 416 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~--~----~~~~l~~~~~~l~~~~~ 416 (422)
++.+..... +...+++.|+.-+|.+.--.-++. ++.+||... + -++|+++..+-|.++++
T Consensus 355 LvDLr~~G~-----dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 355 LVDLRPKGV-----DGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred EEeccccCC-----chHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 666654322 334456666666676554333332 678999874 2 36788888887776653
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-10 Score=110.09 Aligned_cols=256 Identities=14% Similarity=0.096 Sum_probs=157.3
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC---------C-
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR---------P- 133 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~---------~- 133 (422)
++.+...+....-+.....|...+....+++.+.+++.+.+|.+. ..=.||+|||.|+..++..... .
T Consensus 96 ~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~ 173 (608)
T TIGR03811 96 MPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFAMKEV 173 (608)
T ss_pred HHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccchhhhc
Confidence 445544443333333333454455678899999999998877653 3344788888887765433211 0
Q ss_pred ------------------------------------------C------CEEEecCCCccchHHHHhhCCCe---EEEee
Q 014603 134 ------------------------------------------G------ANILLPRPGFPYYEARATHSHLE---VRHFD 162 (422)
Q Consensus 134 ------------------------------------------g------d~Vl~~~~~~~~~~~~~~~~g~~---~~~~~ 162 (422)
| -+|+++...|+++..++...|++ ++.+|
T Consensus 174 ~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~Vp 253 (608)
T TIGR03811 174 KPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVP 253 (608)
T ss_pred cccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEee
Confidence 0 05788888899999999999985 77888
Q ss_pred ccCCCCcccCHHHHHHhhcC----C-c-eEEEEeCCCCCcccccCHHHHHHHHHHH---HHcCc--EEEEcccccccc--
Q 014603 163 LLPAKGWEVDLDAVEALADE----N-T-VALVIINPGNPCGNVYTYQHLQKIAETA---KKLGI--MVIADEVYDHLA-- 229 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~----~-~-~~i~i~~p~nptG~~~~~~~l~~i~~~~---~~~~~--~li~D~~~~~~~-- 229 (422)
++ +++.+|++.|++.+.+ + + -+|+.+.++..+|.+ +++++|+++| +++|+ ++++|.+|+++.
T Consensus 254 vD--~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Gai---Dpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~ 328 (608)
T TIGR03811 254 VD--SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAV---DGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRA 328 (608)
T ss_pred cC--CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCccc---CCHHHHHHHHHHHHHcCCceeEeeeccccchhhh
Confidence 75 4567999999887743 2 2 345556668899999 5566666665 77887 699999999743
Q ss_pred -cCC-C-CCC----------------------------CccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 230 -FGN-T-PFV----------------------------PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 230 -~~~-~-~~~----------------------------~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
+.. . .+. .+..+... .-+.-.++|. +.....+|.++.+++
T Consensus 329 l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~A--DSItvDpHK~-g~~Py~~G~ll~Rd~------ 399 (608)
T TIGR03811 329 IFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEA--ESVTIDPHKM-GYIPYSAGGIVIQDI------ 399 (608)
T ss_pred hhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCc--eEEEeCcccc-cccCCCeEEEEEeCH------
Confidence 111 0 000 01112211 1344589999 566677999998863
Q ss_pred hhHHHHHHh---hhh------------hccCcchHHHHHHH--HHHhhc--hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 279 SGIVDSIKS---FLN------------ISSDPATFIQGAVP--QILEKT--EEEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 279 ~~~~~~~~~---~~~------------~~~~~~~~~~~a~~--~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
++.+.+.. +.. .....+.....++. ..++.. ....+.++..+.-+.++++.+.|+++
T Consensus 400 -~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 400 -RMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred -HHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23332211 100 00111222222222 223322 35678888888889999999999874
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-09 Score=111.11 Aligned_cols=298 Identities=14% Similarity=0.147 Sum_probs=182.5
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCC-----C----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTV-----G----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA- 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~- 131 (422)
-.|+.+.+.+.+- ...+..|.|.+ | +-+++..++++. +.+..+.-+..++|++.++++.+..
T Consensus 77 ~~p~~i~r~v~~~--p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt------Gm~~aNaSl~d~atA~aEa~~~a~~~ 148 (939)
T TIGR00461 77 ILPPVIQRNLLEN--PGWYTAYTPYQPEISQGRLEALLNFQTVVSDLT------GLPVANASLLDEGTAAAEAMALSFNV 148 (939)
T ss_pred cCChHHHHHHHhC--chhhhcCCCCChhhhhHHHHHHHHHHHHHHHHH------CCChhhhhccchhhHHHHHHHHHHHh
Confidence 3456666455431 12244565543 2 335566677776 5677788888999998887776642
Q ss_pred --CCCCEEEecCCCccchHH----HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 132 --RPGANILLPRPGFPYYEA----RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 132 --~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
+++++|++++..|+.+.. .+...|++++.+ |++.|++.+ ++.++++.+|+. .|.+ +++
T Consensus 149 ~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~----------~~~~l~~~~--~~~~v~~q~Pn~-~G~i---ed~ 212 (939)
T TIGR00461 149 SKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVV----------DCSDIKKAV--DVFGCLLQYPAT-DGSI---LDY 212 (939)
T ss_pred hcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEE----------cHHHHhhcC--CEEEEEEECCCC-CeEE---ecH
Confidence 234899999999987653 344678777765 334565554 466677778876 8888 689
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC----CCceeEEEEeeCCCCcccchhH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV----PGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
++|.++++++|.+++++.-...+. ...+..+++.| |++++- |.||. .|.-.|++.+++ ++
T Consensus 213 ~~i~~~~h~~gal~~~~ad~~al~----ll~~Pge~GaD---i~vg~~-q~fg~p~g~GGP~aG~~a~~~--------~l 276 (939)
T TIGR00461 213 KQLIDALHSHKSLVSVAADLMALT----LLTPPGHYGAD---IVLGSS-QRFGVPMGYGGPHAAFFAVKD--------EY 276 (939)
T ss_pred HHHHHHHHHcCCEEEEEechHHhC----CcCCHHHcCCc---EEeeCC-CccCCCCCCCCCceeeeeecH--------hh
Confidence 999999999999999854433221 12233455554 556543 33344 244477777653 22
Q ss_pred HHHHH----------------------------hhhhhccCcchHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 282 VDSIK----------------------------SFLNISSDPATFIQGA--VPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 282 ~~~~~----------------------------~~~~~~~~~~~~~~~a--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
.+.+. +.+.+++-++.....+ +..++.....++++++.++...+..++.+
T Consensus 277 ~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~ 356 (939)
T TIGR00461 277 NRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILAN 356 (939)
T ss_pred HhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1111111111111122 22223334578899999999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
.|++. |+++. .+ .+|--+.+... . .+..++...+ .++||.+.... .+.+++|+. +++++|+.+++
T Consensus 357 ~L~~~-G~~~~-~~--~fF~~~~v~~~---~-~~~~~i~~~~-~~~gi~l~~~~----~~~i~~s~~E~~t~~di~~l~~ 423 (939)
T TIGR00461 357 GLEND-PHELI-NK--TWFDTLTVKVG---N-GISSELLKAA-EEFNINLRAVD----TTTVGIALDETTTKADVENLLK 423 (939)
T ss_pred HHHhC-CCccc-CC--CccceEEEEeC---C-CCHHHHHHHH-HHCCCeeeecC----CCEEEEEeecCCCHHHHHHHHH
Confidence 99995 88744 33 22322222211 0 1456676666 55699976522 468999998 78999999999
Q ss_pred HHH
Q 014603 410 RMK 412 (422)
Q Consensus 410 ~l~ 412 (422)
.+.
T Consensus 424 ~~~ 426 (939)
T TIGR00461 424 VFD 426 (939)
T ss_pred Hhc
Confidence 884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-09 Score=98.80 Aligned_cols=307 Identities=17% Similarity=0.143 Sum_probs=190.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC-HHHHHHH---HHHHh-cCCC----CEEEecCCCccchHHHHhhCCC
Q 014603 86 TVGILPARRAIADYLNRDLPYKLSPDDVYLTLG-CTQAIEV---ILTVL-ARPG----ANILLPRPGFPYYEARATHSHL 156 (422)
Q Consensus 86 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g-~~~a~~~---~~~~l-~~~g----d~Vl~~~~~~~~~~~~~~~~g~ 156 (422)
.+|..++-..+.+||.+-. .-+.|.+.+. |.++=.+ +++.. -..| +.+|+++..|..-...+...|.
T Consensus 104 vqG~l~li~~Lq~~L~~IT----G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~ 179 (496)
T COG1003 104 VQGYLELIYELQEWLKEIT----GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGF 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHhc----CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCc
Confidence 3567777778888887643 3456666543 2222222 22322 1222 6899999999888889999999
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
+++.++.+.+ +.+|+++|++...+++.++.+++|+. -|+- .+.|.+|+++.+++|..|..|.+--....+- .
T Consensus 180 ~VV~V~~~~~--G~VDlddLk~k~~~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~---~ 251 (496)
T COG1003 180 KVVVVKCDEN--GNVDLDDLRAKAEDNLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYYDGANLNAIVGL---A 251 (496)
T ss_pred eEEEEecCCC--CCccHHHHHHHhccceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEecCcchhhhhcc---c
Confidence 9999998644 46999999999999999999999986 4554 2679999999999999999999965432221 1
Q ss_pred CccccCCCCCeEEEecCccccCCC----CceeEEEEeeCCCCcccchhHHHHHHh----------------h--h--hhc
Q 014603 237 PMGVFGSIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDSGIVDSIKS----------------F--L--NIS 292 (422)
Q Consensus 237 ~~~~~~~~~~~i~i~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~~~~----------------~--~--~~~ 292 (422)
.-..++.| ++=.-++|+|+.| |..+|=|.+.. .+...+.. . . ...
T Consensus 252 rPGd~G~D---V~HlNLHKTF~iPHGGGGPG~GPvgVk~--------~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a 320 (496)
T COG1003 252 RPGDMGFD---VVHLNLHKTFCIPHGGGGPGAGPVGVKA--------HLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAA 320 (496)
T ss_pred cccccccc---eEEeecccccccCCCCCCCCCCceehHh--------hccccCCCCcccCCCccccccCCCCccceeecc
Confidence 22334443 3334577888543 44455554421 11111100 0 0 000
Q ss_pred cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-ceE-EEEecCcccccCCCCHHHHH
Q 014603 293 SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG-SMF-VMVKLNYSLLEGINSDMEFA 370 (422)
Q Consensus 293 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~ 370 (422)
.-.|......+..++.....+++++.-+..--+.+++.++|+.. +.+...+.. ..+ +.+.......+......+++
T Consensus 321 ~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvA 398 (496)
T COG1003 321 PYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDARPLKKETGVRALDVA 398 (496)
T ss_pred ccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeechHhHhhcCCcHHHHH
Confidence 11122233333344444456778888888888899999999973 332223332 111 12222211111223677888
Q ss_pred HHHHHhcCeEEecCCCCC--CCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 371 LKLAKEESVIVLPGITVG--LKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 371 ~~l~~~~gi~v~~g~~~~--~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+|+ .+|+.-.. -.|- ..+.+-|=++ -+.++||++++++.++.++-.
T Consensus 399 KrLl-D~GfHaPT-~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 399 KRLL-DYGFHAPT-MYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred HHHH-hcCCCCCc-ccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8875 57987643 3444 4778888877 467899999999998876643
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-09 Score=101.66 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh---cCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL---ARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
-+++..++++. +.+..+.-+-.+++++-++++.+. .+..++|+++...|+.+.. .+...|++++.++
T Consensus 113 fe~Qs~i~eLT------GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~ 186 (429)
T PF02347_consen 113 FEYQSMICELT------GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP 186 (429)
T ss_dssp HHHHHHHHHHH------TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred HHHHHHHHHhh------CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence 36667777776 445445677788888877766553 2334699999999988766 4445688888887
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+... ..| ++++.++++.+|+. .|.+ +++++|.++++++|.++++ .+- .....+ ..+...++
T Consensus 187 ~~~~~--~~d--------~~~~a~v~vq~Pn~-~G~~---ed~~~i~~~~h~~gal~~~-~ad-~~aL~~--l~~Pge~G 248 (429)
T PF02347_consen 187 LDEDG--TTD--------DDDTAAVMVQNPNT-FGVF---EDIKEIADIAHAAGALVIV-GAD-PNALGG--LKSPGEYG 248 (429)
T ss_dssp BBTTC--SB---------STTEEEEEEESS-T-TSB-----THHHHHHHHHHTT-EEEE-CGG-CCGCCT--C--GGGGT
T ss_pred ccccC--Ccc--------ccCeEEEEeecCCC-CceE---eeHHHHHHHHHHcCCEEEE-ecC-HHHHhC--cCChhhcC
Confidence 65432 223 56788999999987 8888 7799999999999999887 332 222222 22334555
Q ss_pred CCCCeEEEecCccccCCC----CceeEEEEeeCCCCcccchhHHHHHH----------------------------hhhh
Q 014603 243 SIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDSGIVDSIK----------------------------SFLN 290 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~ 290 (422)
.| |++++ +|.||.| |..+|++.+++. +.+++. +.+-
T Consensus 249 AD---I~vg~-~Q~fg~p~~~GGP~~G~~a~~~~--------l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKA 316 (429)
T PF02347_consen 249 AD---IVVGE-HQTFGIPMGFGGPGAGFFAVRED--------LVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKA 316 (429)
T ss_dssp -S---EEEEC-CTTTT---CCC-S--EEEEE-GG--------GGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCS
T ss_pred cc---EEeeC-CCCCcccCCCCCCCeeeEEEhhh--------hhhhCCCceecccccccccceeeeccccccccccccch
Confidence 55 66765 7777643 566888887632 222221 1111
Q ss_pred hcc--CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHH
Q 014603 291 ISS--DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDME 368 (422)
Q Consensus 291 ~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 368 (422)
+++ +...+...++..++.....+++.+..++...+..++.+.|+++.+.. + ....+|-++.... .. .
T Consensus 317 tSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~-~--~~~~f~e~v~~~~-------~~-~ 385 (429)
T PF02347_consen 317 TSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLP-F--DNPFFFEFVVVFS-------KD-K 385 (429)
T ss_dssp TT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBEC-S--SSSSBSSEEEEES-------S--H
T ss_pred hhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-c--CCCCceeeeeecC-------Cc-H
Confidence 111 11222223334445545688999999999999999999999973443 2 2222332222211 11 1
Q ss_pred HHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHH
Q 014603 369 FALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 369 ~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l 411 (422)
....++++ ++.-.-+..+...+.+-+|++ +++++|+++++.+
T Consensus 386 ~~~~l~~~-~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 386 EVEELLKR-GIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp HHHHHHHT-T----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred HHHHHHHH-HHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 22223322 332211111222458888887 6789999998764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=97.45 Aligned_cols=99 Identities=24% Similarity=0.431 Sum_probs=77.9
Q ss_pred cCCCCceeecCCCCCC-------------CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCC--C
Q 014603 42 NDTRPLIPLGHGDPSA-------------FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLP--Y 106 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~-------------~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~ 106 (422)
.++.++|+|+...-.+ .+.+..++.+.+++.+. ..|.+..|.+++|+++++|+.+.+| +
T Consensus 40 ~np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~~------a~Y~~~~G~~~lR~AiA~~l~~~~g~~v 113 (153)
T PLN02994 40 HNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDI------ALFQDYHGLANFRKAIANFMAEARGGRV 113 (153)
T ss_pred cCCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHHH------hcCCCCCCcHHHHHHHHHHHHHHhCCCC
Confidence 5677789988765210 02233444445555442 2488889999999999999999877 6
Q ss_pred CCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccc
Q 014603 107 KLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPY 146 (422)
Q Consensus 107 ~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~ 146 (422)
.+++++|++|+|++++++.++.+++++||.|++++|+|++
T Consensus 114 ~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 114 KFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred ccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 6889999999999999999999999999999999999974
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-08 Score=93.33 Aligned_cols=223 Identities=17% Similarity=0.111 Sum_probs=149.3
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHH-HHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEec
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPA-RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l-r~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~ 140 (422)
..++++++++...........|.-..+...- ...+++.+.. ....+.++++++.+.|+.+++.++.++ .+|++.
T Consensus 38 ~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~----~~~aea~~ivnnn~aAVll~~~al~~~-~EvVis 112 (395)
T COG1921 38 LYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCG----LTGAEAAAIVNNNAAAVLLTLNALAEG-KEVVVS 112 (395)
T ss_pred cCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhc----ccchhheeeECCcHHHHHHHHhhhccC-CeEEEE
Confidence 3568899999988876433333322221111 1234444422 234678899999999999999998774 444432
Q ss_pred -----CCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCccc--ccCHHHHHHHHHHHH
Q 014603 141 -----RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGN--VYTYQHLQKIAETAK 213 (422)
Q Consensus 141 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~--~~~~~~l~~i~~~~~ 213 (422)
+++++......+..|.+++.+.-.. .....+++.++.+++.+++-++.+|- |. .+ ..++++++|+
T Consensus 113 ~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l---~~~~l~~ia~ 184 (395)
T COG1921 113 RGELVEGGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNY-GFTGML---SEEELVEIAH 184 (395)
T ss_pred ccccccCCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhccCCeeEEEEeeccc-cccccc---cHHHHHHHHH
Confidence 1577788999999999998886422 25778899999999999887766552 32 22 3567888888
Q ss_pred HcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hc
Q 014603 214 KLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-IS 292 (422)
Q Consensus 214 ~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (422)
++|+++++|.+.+...............+.| ++++|..|.++ |.+.|.+++. ++++++++...- ..
T Consensus 185 ~~~lpvivD~aSg~~v~~e~~l~~~la~GaD---LV~~SgdKllg--GPqaGii~Gk--------KelI~~lq~~~l~Ra 251 (395)
T COG1921 185 EKGLPVIVDLASGALVDKEPDLREALALGAD---LVSFSGDKLLG--GPQAGIIVGK--------KELIEKLQSHPLKRA 251 (395)
T ss_pred HcCCCEEEecCCccccccccchhHHHhcCCC---EEEEecchhcC--CCccceEech--------HHHHHHHHhhhhhhh
Confidence 9999999999987654311122233344554 88899999864 6668988885 688888876552 22
Q ss_pred cCcchHHHHHHHHHHhhc
Q 014603 293 SDPATFIQGAVPQILEKT 310 (422)
Q Consensus 293 ~~~~~~~~~a~~~~l~~~ 310 (422)
........+++.++|+..
T Consensus 252 lrv~K~tla~l~~aLe~y 269 (395)
T COG1921 252 LRVDKETLAALEAALELY 269 (395)
T ss_pred hhcCcHhHHHHHHHHHHH
Confidence 345566667777777653
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-08 Score=87.69 Aligned_cols=327 Identities=13% Similarity=0.066 Sum_probs=187.9
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC------CC----CCHHHHHHHHHHHhhcCCCCCCCCCEE
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS------TV----GILPARRAIADYLNRDLPYKLSPDDVY 114 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----g~~~lr~~ia~~l~~~~~~~~~~~~i~ 114 (422)
+...||+.|.. ..|+++.+...+.+.+-...+++- .+ -+.+.++.+.++| +++-+.+-++
T Consensus 4 ~~~~nFsaGPa------~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl----~iPd~Y~Vlf 73 (365)
T COG1932 4 PRVYNFSAGPA------ALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELL----NIPDDYKVLF 73 (365)
T ss_pred CCCCCCCCCcc------cCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHh----CCCCCceEEE
Confidence 45678999873 345777777666655421111110 11 1234444555555 4444444445
Q ss_pred EecCHHHHHHHHHHHhcCCCCE--EEecCCCccchHHHHhhCCCeEEEeecc-CCCC--cccCHHHHHHhhcCCceEEEE
Q 014603 115 LTLGCTQAIEVILTVLARPGAN--ILLPRPGFPYYEARATHSHLEVRHFDLL-PAKG--WEVDLDAVEALADENTVALVI 189 (422)
Q Consensus 115 ~~~g~~~a~~~~~~~l~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~--~~~d~~~l~~~~~~~~~~i~i 189 (422)
+-.|+|..+..+...|...... |.+-..+-.+ ...++..+.++...... .+.+ .-++++.+. +.++..-+.+
T Consensus 74 lqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a-~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~ 150 (365)
T COG1932 74 LQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFA-IKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHF 150 (365)
T ss_pred EcCccHHHHHHHHHhhhcccCceeEeeeehhHhH-HHHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEE
Confidence 5667899999998888755432 4333322222 23444444322211111 1111 223333332 3333323566
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
|+-..-+|+-++ +...+.. +.++|.|.+...+.. ..++..++ ++.+|..|.+|..| ++.++.
T Consensus 151 ~~NeTi~Gv~v~--~~p~~~~-----~~~~v~D~SS~ilsr----~iDvsk~d-----viyagaQKnlGpaG--ltvvIv 212 (365)
T COG1932 151 CWNETISGVEVP--ELPDIGS-----DGLLVADASSAILSR----PIDVSKYD-----VIYAGAQKNLGPAG--LTVVIV 212 (365)
T ss_pred ecCCcccceEcc--CCCCCCC-----CceEEEecccHHhcC----CCChhHcc-----eEEEehhhccCccc--eEEEEE
Confidence 665667888765 2222211 278999988766432 23444444 67778999999999 777877
Q ss_pred eCCCCcccchhHHHHHHhh--------------hhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhh
Q 014603 270 SDPNGILQDSGIVDSIKSF--------------LNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
+ +++.++.+.. ..+..+|+.+..+.....++... ..+++...++-++..+.|.+.+.
T Consensus 213 r--------~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id 284 (365)
T COG1932 213 R--------PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWID 284 (365)
T ss_pred c--------HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 4566666443 11334777777777766666533 45688888888999999999998
Q ss_pred cCCCCCCCCCC--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHH
Q 014603 335 EIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGR 410 (422)
Q Consensus 335 ~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~ 410 (422)
+-+-......+ .+-+-+.+.+.... -+..++..+ ++.|+...-|+. ..+.+|+++. .+.++++.+++-
T Consensus 285 ~s~fy~~~v~~~~RS~mnV~f~~~~~~-----ld~~fv~ea-e~~gl~~lkGhr--~vgGmRasiynA~~~e~veaL~~f 356 (365)
T COG1932 285 KSDFYRNLVAKANRSRMNVTFTLVDAE-----LDKGFVAEA-EAAGLIYLKGHR--SVGGLRASIYNAVPLEDVEALTDF 356 (365)
T ss_pred hCCccccccchhhccceeEEEEcCcHH-----HHHHHHHHH-HHcCCceecccc--CCCceeeeeecCCCHHHHHHHHHH
Confidence 86322212222 22344445554321 234455554 566877777732 3455999997 688999999999
Q ss_pred HHHHHHHh
Q 014603 411 MKAFYDRH 418 (422)
Q Consensus 411 l~~~~~~~ 418 (422)
++.+.+.+
T Consensus 357 m~~f~~~~ 364 (365)
T COG1932 357 MDWFEETY 364 (365)
T ss_pred HHHHHHhh
Confidence 88887654
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-07 Score=81.75 Aligned_cols=305 Identities=18% Similarity=0.220 Sum_probs=177.1
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCC-----C----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTV-----G----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA- 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~- 131 (422)
..|+.|.+-+.+ +..++..|.|.+ | +-+++..++++. +.+-.+.-+--++|++-+++..+..
T Consensus 88 ~~P~vI~rnile--~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT------Gm~VANASm~DeaTAaAEAm~ma~r~ 159 (450)
T COG0403 88 YTPPVILRNILE--NPEWYTAYTPYQPEISQGRLEALFEFQTLVADLT------GLDVANASMLDEATAAAEAMLMAKRV 159 (450)
T ss_pred cCcHHHHHHhhc--CccccccCCCCchhhhhHHHHHHHHHHHHHHHHh------CCCcccchhhhhHHHHHHHHHHHHHh
Confidence 455666534433 123455666642 2 224455666665 4555667777788888777766542
Q ss_pred --CCCCEEEecCCCccchHHHHhh----CCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 132 --RPGANILLPRPGFPYYEARATH----SHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 132 --~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
.+.++++++..+|+-+....+. +|.+++..+.+ |.+.+++..+.++.++++-.|+. .|... +++
T Consensus 160 ~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~~~~~~~gv~vQyP~~-~G~~~--~d~ 229 (450)
T COG0403 160 TKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESADDGDVFGVLVQYPNT-FGIVE--EDL 229 (450)
T ss_pred hcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhccccCeEEEEEecCCC-CCccc--hhH
Confidence 2358999999999877655543 34555544432 66777777333678888888885 66332 679
Q ss_pred HHHHHHHHHcCcEEEE--cccccccccCCCCCCCccccCCCCCeEEEecCccccCCC----CceeEEEEeeCCCCcccch
Q 014603 206 QKIAETAKKLGIMVIA--DEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~--D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~ 279 (422)
.+|.+.++.+|.++++ |-..-.+ ..+..+++.| |++++..-+ |.| |..+|+..+.+
T Consensus 230 ~~l~~~~h~~~al~~v~aDplaL~L------L~pPGe~GAD---IvvG~~Qrf-GvPmgfGGPhag~fA~~~-------- 291 (450)
T COG0403 230 RALIEAAHSAGALVIVAADPLALGL------LKPPGEFGAD---IVVGSAQRF-GVPMGFGGPHAGYFAVKD-------- 291 (450)
T ss_pred HHHHHHHhhcCCEEEEEechhHhhc------cCCccccCCc---eEEecCccc-CCCcCCCCcceeeeeEhH--------
Confidence 9999999999987763 3222111 1233455555 888877665 443 56688887753
Q ss_pred hHHHHHH----------------------------hhhhhccCcch--HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 280 GIVDSIK----------------------------SFLNISSDPAT--FIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 280 ~~~~~~~----------------------------~~~~~~~~~~~--~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
++..++. +.+-+++-++. +...++..++..+...++.++..+..+...++
T Consensus 292 ~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~l 371 (450)
T COG0403 292 EFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYL 371 (450)
T ss_pred hHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 2222221 11112211111 22222222233345788999999999999999
Q ss_pred HHHhhcCC-CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHH
Q 014603 330 CDRLKEIP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALED 406 (422)
Q Consensus 330 ~~~L~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~ 406 (422)
.++|++.. ++++. .. .+|--+.+..+. .....++.+ ....|+-+..-. ..++-+++. +++++|+.
T Consensus 372 a~~L~~~~~g~~~~-~~--~fFdt~~v~~~~----~~~~~l~~~-~~~~G~~L~~~~----~~~~~ia~tEt~t~~~i~~ 439 (450)
T COG0403 372 AAGLKEIGAGVELV-FD--HFFDTFTVRVPE----EVAEALLAA-AIAGGINLRRVD----ADTVLIALTETTTKEDIDA 439 (450)
T ss_pred HHHHhhcCCceEec-cc--cceeeEEEecch----hHHHHHHHH-HHhcCCceeeec----CCceEEEeecccCHHHHHH
Confidence 99999763 35522 22 334333332210 012233333 234466665422 346777776 67899999
Q ss_pred HHHHHHHH
Q 014603 407 GLGRMKAF 414 (422)
Q Consensus 407 ~~~~l~~~ 414 (422)
++..+...
T Consensus 440 l~~~~~~~ 447 (450)
T COG0403 440 LVAAFGGV 447 (450)
T ss_pred HHHHHhhh
Confidence 98887654
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-08 Score=87.07 Aligned_cols=205 Identities=14% Similarity=0.123 Sum_probs=114.7
Q ss_pred CceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC
Q 014603 183 NTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP 260 (422)
Q Consensus 183 ~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~ 260 (422)
.+.+.+|..| +...|- .-+++..+++..++++||+.+|+||++.+.+-+|.. .....++-+.. .-+-+|||-|. .
T Consensus 270 ~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~-WaHehw~l~~P-pD~vTFSKK~q-~ 346 (484)
T KOG1405|consen 270 KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKF-WAHEHWNLDSP-PDVVTFSKKFQ-T 346 (484)
T ss_pred CCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCce-eeehhcCCCCC-ccceehhhhhh-c
Confidence 4677788888 555554 578899999999999999999999999987666542 22222222111 22335789864 4
Q ss_pred CceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----c
Q 014603 261 GWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK----E 335 (422)
Q Consensus 261 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~ 335 (422)
| ||..-. +++.. +.++.+ +....+.-...+.++++...++.+- +..+..-+.|...|. +
T Consensus 347 g---Gffh~~---------~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll---~n~~~vG~~l~~gL~~Lq~~ 410 (484)
T KOG1405|consen 347 G---GFFHDE---------EFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIKREDLL---NNVAHVGKALLKGLLELQAK 410 (484)
T ss_pred C---ccccCc---------ccCCC-chHHHhhhhcCChHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 4 554421 12211 111111 1233333333333444443322222 223333333333333 3
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
.|+.- -.....|.|+...++.. ...+.+-..++-+|+.+..+ + ...+|+.++ ..+...+-.++++.+
T Consensus 411 ~p~~~-~~~RGrGTF~a~d~ps~------~~Rdk~i~~~~~nGv~~GGC---g-~~siRfRPsLvf~~~Ha~i~l~~~~k 479 (484)
T KOG1405|consen 411 YPGKI-NNLRGRGTFIAWDCPSG------SIRDKLILIARLNGVNLGGC---G-DKSIRFRPSLVFRKHHADIFLDIFDK 479 (484)
T ss_pred Cchhh-hcccccceEEEEeCCCh------HHHHHHHHHHHHcCceeccc---c-cceeeeccceeehhhhHHHHHHHHHH
Confidence 46543 22334577887788764 33444555567789887543 2 344566555 677788888888888
Q ss_pred HHHH
Q 014603 414 FYDR 417 (422)
Q Consensus 414 ~~~~ 417 (422)
.+..
T Consensus 480 ~l~~ 483 (484)
T KOG1405|consen 480 ILAG 483 (484)
T ss_pred Hhcc
Confidence 7754
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-06 Score=80.20 Aligned_cols=321 Identities=12% Similarity=0.061 Sum_probs=179.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCC--------CCCCEEEecCHHHHHHHHHHHh-------cCCC-----------C-EE
Q 014603 85 STVGILPARRAIADYLNRDLPYKL--------SPDDVYLTLGCTQAIEVILTVL-------ARPG-----------A-NI 137 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~--------~~~~i~~~~g~~~a~~~~~~~l-------~~~g-----------d-~V 137 (422)
..+.+.||+..+.+||....+.+. +...+ +..+++++...++-+. .+.+ + .+
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGv-iQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~ 185 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGV-IQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVA 185 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcce-EecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheE
Confidence 345578999999999987544321 22234 4444555554443321 1111 1 34
Q ss_pred EecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC----ceEEEEeCCCCCcccccCHHHHHHHHHHHH
Q 014603 138 LLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN----TVALVIINPGNPCGNVYTYQHLQKIAETAK 213 (422)
Q Consensus 138 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~~i~i~~p~nptG~~~~~~~l~~i~~~~~ 213 (422)
...+..|.+....+...+++.+.++.+. +++++.+.|++++.++ -.-++++.--.-||. ...+++.+|..+|+
T Consensus 186 Y~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~-ca~D~l~elg~Vc~ 262 (511)
T KOG0628|consen 186 YCSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSS-CAFDELEELGPVCR 262 (511)
T ss_pred EecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccc-cccccHHHhcchhh
Confidence 5678889999998888899999888653 7889999999887542 222333322222333 23478999999999
Q ss_pred HcCcEEEEcccccccccCCCCCCC-ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH-HHHHHhhhhh
Q 014603 214 KLGIMVIADEVYDHLAFGNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI-VDSIKSFLNI 291 (422)
Q Consensus 214 ~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~-~~~~~~~~~~ 291 (422)
++|+++++|.+|++..+--..+.. +..++..+ -+-.-.||+ ++--+-|..+...+...+...-.. -..++.....
T Consensus 263 ~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aD--Sfn~n~hK~-~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~ 339 (511)
T KOG0628|consen 263 EEGLWLHVDAAYAGSAFICPEFRYLMRGIEYAD--SFNFNPHKW-LLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQG 339 (511)
T ss_pred hcCEEEEeehhhccccccCHHHHHHhhcchhhc--cccCChhhe-eEEeeeeecceeecCceeeeeeecChHhhcchhhc
Confidence 999999999999964442111111 11111111 222345566 344444444444433111000000 0011111110
Q ss_pred cc-----CcchHH--HHHHHHH--HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 292 SS-----DPATFI--QGAVPQI--LEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 292 ~~-----~~~~~~--~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
.. ..-+++ ..++..+ ++...-+.+++..++.-++.+.+.+.+.+-+.+++.....-|... +++...
T Consensus 340 ~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvc-FRlk~~---- 414 (511)
T KOG0628|consen 340 SAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVC-FRLKGD---- 414 (511)
T ss_pred cCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeE-EeecCC----
Confidence 00 000111 1222222 222223455556666667777777777776777755444445333 455432
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHHHHHHHHHHHh
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~~~~ 418 (422)
......+..++-....|.+.|... ...=.+|++++ ++.++++++-+.|.+..+++
T Consensus 415 N~~ne~Ll~~in~~g~i~l~~~~l-~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 415 NEINEALLNRLNSSGRIHLVPASL-HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred cHHHHHHHHHHHhcCcEEEEEeee-cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 124566777777777888888653 22446899887 67899999999999888764
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-08 Score=87.72 Aligned_cols=155 Identities=20% Similarity=0.260 Sum_probs=99.0
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecC-CCccchH----------HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCce
Q 014603 117 LGCTQAIEVILTVLARPGANILLPR-PGFPYYE----------ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~-~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 185 (422)
.|||.|+..++.++++|||+++... .-|.... ...+.+|+....+++.++ ..+|.+.+++.++++++
T Consensus 79 vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~d--g~~D~~~i~~~~~~~tk 156 (403)
T PF06838_consen 79 VSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTED--GTIDWEAIKKALKPNTK 156 (403)
T ss_dssp -SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TT--SSB-HHHHHHHHHTTEE
T ss_pred cchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCC--CCcCHHHHHHhhccCce
Confidence 4789999999999999999998643 3333222 223556778888888643 46999999999999999
Q ss_pred EEEEeCC-CCCcccccCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-
Q 014603 186 ALVIINP-GNPCGNVYTYQHLQKIAETAKKL--GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG- 261 (422)
Q Consensus 186 ~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G- 261 (422)
+++|--. ...+=..++.++|+++++++|+. ++++++|.+|+.|.-.-+ + ...+.| ++.+|+=|..| .|
T Consensus 157 ~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E-P---~~vGAD---l~aGSLIKNpG-Ggi 228 (403)
T PF06838_consen 157 MVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE-P---TEVGAD---LMAGSLIKNPG-GGI 228 (403)
T ss_dssp EEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS--G---GGGT-S---EEEEETTSGGG-TTT
T ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC-c---cccchh---heeccceeCCC-CCc
Confidence 9887744 33333457789999999999865 789999999998653211 1 233444 99999999953 33
Q ss_pred -ceeEEEEeeCCCCcccchhHHHHHHhhh
Q 014603 262 -WRLGWLVTSDPNGILQDSGIVDSIKSFL 289 (422)
Q Consensus 262 -~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 289 (422)
.--||++++ .++.++.....
T Consensus 229 AptGGYIaGr--------~~lVe~~a~RL 249 (403)
T PF06838_consen 229 APTGGYIAGR--------KDLVERAAYRL 249 (403)
T ss_dssp -SS-EEEEES--------HHHHHHHHHHH
T ss_pred cCcCCEEech--------HHHHHHHHhhh
Confidence 234888875 57888776554
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.7e-07 Score=82.59 Aligned_cols=288 Identities=14% Similarity=0.127 Sum_probs=150.7
Q ss_pred CCEEEecCHHHH-HHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCC-cccCHHHHHHhhc---CC
Q 014603 111 DDVYLTLGCTQA-IEVILTVLA--RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKG-WEVDLDAVEALAD---EN 183 (422)
Q Consensus 111 ~~i~~~~g~~~a-~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~d~~~l~~~~~---~~ 183 (422)
+..++++-+|.- +.+.+.++. ..++.|+.+.-.+.....++...|.+++.++....++ ...|.+.+++.++ +.
T Consensus 75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~ 154 (389)
T PF05889_consen 75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELGAD 154 (389)
T ss_dssp CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGG
T ss_pred cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCC
Confidence 456777666543 333344443 4568999999888888888889999998888543333 3446677776653 35
Q ss_pred ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 184 TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGN-TPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 184 ~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
..+.++++++.-.+... +++++|+++|++||+..|+..||+.-...- +........+.- -+++.|+-|-|..|-
T Consensus 155 ~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRv--da~vqS~dkNF~VPv- 229 (389)
T PF05889_consen 155 NILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRV--DAFVQSTDKNFMVPV- 229 (389)
T ss_dssp GEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTC--SEEEEEHHHHHCEES-
T ss_pred CeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCc--ceeeeecCCCEEecC-
Confidence 67788888765555553 569999999999999999999997510000 000000001111 177889999986541
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CC
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE----IP 337 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~ 337 (422)
.-+.+..++ +..+..+.... ...+..+. .......+.. ....+.......++...+++++|++ .
T Consensus 230 Ggai~As~~-------~~~i~~vs~~YpGRas~sp~--ld~~itLl~L-G~~g~~~ll~~r~~~f~~l~erl~~~aee~- 298 (389)
T PF05889_consen 230 GGAIMASFD-------PSGILAVSKEYPGRASASPS--LDLFITLLSL-GCTGYGALLKERKASFPYLKERLKKWAEEV- 298 (389)
T ss_dssp SHEEEEESS-------HHHHHHHHHTSHSHBTSHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCcEEEecC-------HHHHHHHHHHhhhhhhcccc--hHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 123444433 56666665543 22222222 2222222222 2223333444444444444444442 2
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCC-CHHHHHHHHHHhcCeE----EecCCCCC-------CCCeEEEEe--ccChHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGIN-SDMEFALKLAKEESVI----VLPGITVG-------LKDWLRITF--AVEPSA 403 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~----v~~g~~~~-------~~~~iRis~--~~~~~~ 403 (422)
+-.+...|.+...+.+.++... ... ...-++-..|..+||. |.|+.... ...++-++. +.+++|
T Consensus 299 ~e~ll~~p~N~is~a~tl~~l~--~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~ee 376 (389)
T PF05889_consen 299 GERLLETPRNHISMAFTLDTLY--EISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREE 376 (389)
T ss_dssp TEEBSSSTT-SSEEEEE-TTCC--TCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHH
T ss_pred hhhhcCCCCCCeeEEEECccch--hhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHH
Confidence 2222335666555556665321 111 1223334444556664 33332211 135677744 489999
Q ss_pred HHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYD 416 (422)
Q Consensus 404 l~~~~~~l~~~~~ 416 (422)
++.++++|+++++
T Consensus 377 vd~~v~rL~k~i~ 389 (389)
T PF05889_consen 377 VDYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-06 Score=76.46 Aligned_cols=340 Identities=16% Similarity=0.124 Sum_probs=204.3
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~ 126 (422)
.|||=....+ -.+....+.+|..- .-.|..+.+.-.|++++.+.+ .-+.++.|.-|..|-+++
T Consensus 48 ~IDLLTDSGT----gams~~qwaamm~G-----DEAYagsrs~~~L~~avkdif--------Gfq~~iPthQGRgAE~Il 110 (471)
T COG3033 48 FIDLLTDSGT----GAMTDKQWAAMMRG-----DEAYAGSRSYYALADAVKDIF--------GFQYTIPTHQGRGAENIL 110 (471)
T ss_pred EEEeeccCCc----ccccHHHHHHHhcc-----chhhcccccHHHHHHHHHHhc--------CceeeeeccCCccHHHHH
Confidence 4666444333 13345555555442 126777788889999999998 246788888888888888
Q ss_pred HHHhcC-----CCCEEEecCCCccch-HHHHhhCCCeEEEeeccCCC--------CcccCHHHHHHhhcC----CceEEE
Q 014603 127 LTVLAR-----PGANILLPRPGFPYY-EARATHSHLEVRHFDLLPAK--------GWEVDLDAVEALADE----NTVALV 188 (422)
Q Consensus 127 ~~~l~~-----~gd~Vl~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--------~~~~d~~~l~~~~~~----~~~~i~ 188 (422)
+..+++ ||.+.+++++.|.-. ....+..|..++.++++... .+.+|++.|++.+++ +...++
T Consensus 111 ~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~ 190 (471)
T COG3033 111 IPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIV 190 (471)
T ss_pred HHHHhhhccccCCccccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEE
Confidence 877765 455667777777544 44445567666666553211 245799999998864 344444
Q ss_pred EeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc----cccC---CCCCCCccccCC----CCCeEEEecCccc
Q 014603 189 IINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH----LAFG---NTPFVPMGVFGS----IVPVLTLGSISKR 256 (422)
Q Consensus 189 i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~----~~~~---~~~~~~~~~~~~----~~~~i~i~s~sK~ 256 (422)
++-. |...|+..|.+-+++..++|++|++.++.|.+-.. +.-. |-...++..+.. .. .-.+.|.-|-
T Consensus 191 ~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYa-D~~~mS~KKD 269 (471)
T COG3033 191 LTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYA-DGCTMSAKKD 269 (471)
T ss_pred EEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhh-hhheeecccc
Confidence 4433 44677888999999999999999999999998532 1100 101111111100 00 0234466666
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh------hccCcchHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHH
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN------ISSDPATFIQGAVPQILEKT-EEEFFSKITDILRETADIC 329 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l 329 (422)
++..+ -|+++.+|... -++...++...- ..++.+.-.+.+++.-|.+. ...|+.++.++++.+.
T Consensus 270 -~lvnm-GGfl~~~D~~~----fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~--- 340 (471)
T COG3033 270 -GLVNM-GGFLCFKDDSF----FDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLA--- 340 (471)
T ss_pred -ceecc-ccEEEecCccH----HHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHH---
Confidence 44321 27778776421 124444443321 12333444555655556553 2577777777766554
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCc----ccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------CCe
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNY----SLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------KDW 392 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------~~~ 392 (422)
+.|++. |+.++ .|.+|.-.++.... -..+.. .++.+..+|-++.||-..--..+.. -..
T Consensus 341 -~~l~~~-GVpi~-~paGGHavfvda~~~lphip~eqF-paqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~el 416 (471)
T COG3033 341 -DGLEEA-GVPIV-QPAGGHAVFVDAGKFLPHIPAEQF-PAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAEL 416 (471)
T ss_pred -HHHHhc-CCeeE-ecCCCceEEeehhhhcCCCChhhC-cHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchhe
Confidence 555555 77633 77778777765422 111112 3566677777888987664333321 256
Q ss_pred EEEEec---cChHHHHHHHHHHHHHHHH
Q 014603 393 LRITFA---VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 393 iRis~~---~~~~~l~~~~~~l~~~~~~ 417 (422)
+|+++. .+.+.++..++.+++..++
T Consensus 417 vRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 417 VRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred eeEeccccccchhHHHHHHHHHHHHHhc
Confidence 999997 4678898888888877654
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-09 Score=95.57 Aligned_cols=251 Identities=18% Similarity=0.158 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCC-----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVG-----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN 136 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~ 136 (422)
+.++++.+++.+...+.....|.-..| +..+.+.+++.. ..+..+++++..+|+.+++.++. +|.+
T Consensus 17 ~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt--------gAeaA~VvNnnaAAv~L~l~~la-~~~E 87 (367)
T PF03841_consen 17 PLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT--------GAEAALVVNNNAAAVLLALNTLA-KGKE 87 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccccc-cccc
Confidence 445777777777654422223322111 122333333333 45677888888899999888886 4667
Q ss_pred EEecCCCcc------chHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc--ccccCHHHHHHH
Q 014603 137 ILLPRPGFP------YYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC--GNVYTYQHLQKI 208 (422)
Q Consensus 137 Vl~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt--G~~~~~~~l~~i 208 (422)
|++....-. .+....+..|..++.+.... ...+++.+++++++|.+++..+++|-. |-.- .-.++++
T Consensus 88 vIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~-~~~~~el 162 (367)
T PF03841_consen 88 VIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITENTAALLKVHTSNFRIQGFTG-EVSLEEL 162 (367)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccc-cccHHHH
Confidence 777654331 24556677788888776432 246778889999999999999987742 2111 1258889
Q ss_pred HHHHHHcCcEEEEcccccccc----cCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 209 AETAKKLGIMVIADEVYDHLA----FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 209 ~~~~~~~~~~li~D~~~~~~~----~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
++++++||+++++|-..+.+. |+-...+.+...-...-.++++|-.|.+|+|- .|.+++. ++++++
T Consensus 163 ~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ--aGiI~Gk--------k~lI~~ 232 (367)
T PF03841_consen 163 AELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ--AGIIVGK--------KELIEK 232 (367)
T ss_dssp HHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S---EEEEEE--------HHHHHH
T ss_pred HHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC--eEEEEeC--------HHHHHH
Confidence 999999999999998874322 10001112222211112288899999976554 7999986 689999
Q ss_pred HHhhhh-hccCcchHHHHHHHHHHhhchH-----------HHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 285 IKSFLN-ISSDPATFIQGAVPQILEKTEE-----------EFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 285 ~~~~~~-~~~~~~~~~~~a~~~~l~~~~~-----------~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
++...- ..........+++.+.|+...+ ..+....+.++++.+.+...|+..
T Consensus 233 lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 233 LKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp HHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred HhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 876542 2335566667777666664321 123333455666666676666654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.7e-07 Score=81.99 Aligned_cols=261 Identities=14% Similarity=0.090 Sum_probs=148.4
Q ss_pred EecCCCccchHHHHhhCCCe---EEEeeccCCCCcccCHHHHHHhhcC---C--ceEEEEe-CCCCCcccccCHHHHHHH
Q 014603 138 LLPRPGFPYYEARATHSHLE---VRHFDLLPAKGWEVDLDAVEALADE---N--TVALVII-NPGNPCGNVYTYQHLQKI 208 (422)
Q Consensus 138 l~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~d~~~l~~~~~~---~--~~~i~i~-~p~nptG~~~~~~~l~~i 208 (422)
.+.+-+|+++..++...|+. ++.++. ...+.+++++||+.+-. + +..++-+ .....-|.. +++..|
T Consensus 201 FtSeesHYSi~kaAa~lg~gtd~c~~v~t--~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~i 275 (510)
T KOG0629|consen 201 FTSEESHYSIKKAAAFLGLGTDHCIKVKT--DERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGI 275 (510)
T ss_pred EecccchhhHHHHHHHhccCCceeEEecc--cccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHH
Confidence 34577889999999998854 444443 34567999999986632 1 1223222 225566776 889999
Q ss_pred HHHHHHcCcEEEEcccccccc-cCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh
Q 014603 209 AETAKKLGIMVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS 287 (422)
Q Consensus 209 ~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
+++|++|++++++|.+.++.. .+......+..+...+ -+..+.+|. .+..+.++..+.+.. .+..+...
T Consensus 276 adiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~--SvtwnpHK~-~gaplqCsa~l~r~~-------gll~~Cn~ 345 (510)
T KOG0629|consen 276 ADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERAN--SVTWNPHKL-MGAPLQCSAFLTREE-------GLLQRCNQ 345 (510)
T ss_pred HHHHHhcCEEEEeecccccccccChhhHhhccCccccC--ceeecHHHh-hcCcchhhHHHHHHH-------HHHHhhcc
Confidence 999999999999999987622 2211111222222222 445688999 466688888776532 23333321
Q ss_pred hhh---------h--c-cCcchHHHHH-----HHHHH--hhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CC
Q 014603 288 FLN---------I--S-SDPATFIQGA-----VPQIL--EKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK--PE 346 (422)
Q Consensus 288 ~~~---------~--~-~~~~~~~~~a-----~~~~l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~ 346 (422)
... + + -+.....|-. ..-+| +.-....+++.++++-++++++.++|++.++...+.. |+
T Consensus 346 ~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe 425 (510)
T KOG0629|consen 346 MSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPE 425 (510)
T ss_pred cchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCc
Confidence 100 0 0 0111122211 11111 1112456788889999999999999999877543433 44
Q ss_pred CceEEEEecCcccccCCCCH-----------HHHHHHHHHhcCeEEecCCCCCC-CCeEEEEec---cChHHHHHHHHHH
Q 014603 347 GSMFVMVKLNYSLLEGINSD-----------MEFALKLAKEESVIVLPGITVGL-KDWLRITFA---VEPSALEDGLGRM 411 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~---~~~~~l~~~~~~l 411 (422)
..++.+-..|.. ..++..+ ..+-.++++ +|-....-...+. ++.+|+.++ .+.++++.+++.|
T Consensus 426 ~~nv~fw~vp~~-lR~~~~~~e~~~rL~kVaPkIK~~Mm~-~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEI 503 (510)
T KOG0629|consen 426 HVNVCFWYVPPS-LRGWQENPERDSRLVKVAPKIKERMMK-KGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEI 503 (510)
T ss_pred eEEEeeccCchH-hccCcccchhhhHHHhhCcHHHHHHHh-ccceeeEecccccccchhheecccchhhhhhHHHHHHHH
Confidence 233322223221 1111111 112233333 3555444333333 678998887 3678999999998
Q ss_pred HHHH
Q 014603 412 KAFY 415 (422)
Q Consensus 412 ~~~~ 415 (422)
...-
T Consensus 504 erlg 507 (510)
T KOG0629|consen 504 ERLG 507 (510)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-05 Score=82.34 Aligned_cols=297 Identities=14% Similarity=0.122 Sum_probs=167.6
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCC-----C----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTV-----G----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA- 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~- 131 (422)
..|+.+.+.+.+- ...+..|.|.+ | +-+++..|+++. +.+..+.-+-.++|++-++++.+..
T Consensus 92 ~~P~vi~~~i~~~--~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt------Gm~vaNASl~D~atA~aEA~~ma~~~ 163 (954)
T PRK12566 92 VTPTVILRNVLEN--PGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT------GLDLANASLLDEATAAAEAMALAKRV 163 (954)
T ss_pred cCcHHHHHHHHhC--chhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh------CchhhhhhhccchhHHHHHHHHHHHH
Confidence 3455553444331 12345666543 2 334555666665 3444555666677776665544432
Q ss_pred --CCCCEEEecCCCccchHHHHh----hCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 132 --RPGANILLPRPGFPYYEARAT----HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 132 --~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
.+..+|++++..|+-+....+ ..|++++. +++++.++.++.++++.+|+. .|.+ +++
T Consensus 164 ~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~~~~~v~vq~P~~-~G~i---~d~ 226 (954)
T PRK12566 164 AKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAHAVFGALLQYPDT-HGEI---RDL 226 (954)
T ss_pred hhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCCCEEEEEEECCCC-ceEE---ccH
Confidence 224689999999987665443 34555542 233444555677788888876 8888 789
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCc---cccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS---KRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s---K~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
++|.+++++.|.++| +.+- .+..+. ..+...++.| |++++.. =-++..|.-.|++.+.+ ++.
T Consensus 227 ~~i~~~~h~~gal~~-~~~d-~laL~l--l~~Pge~GAD---I~vG~~Q~fGvp~~~GGP~ag~~a~~~--------~~~ 291 (954)
T PRK12566 227 RPLIDQLHGQQALAC-VAAD-LLSLLV--LTPPGELGAD---VVLGSTQRFGVPMGYGGPHAAYFACRD--------DYK 291 (954)
T ss_pred HHHHHHHHHcCCEEE-EEeC-HHHHhC--CCChhhcCCc---EEeeCCCcCCCCCCCCCCCeeeeeehH--------HHH
Confidence 999999999998866 2221 111111 1223455554 6666322 22223355578887753 233
Q ss_pred HHHH----------------------------hhhhhccCcchHHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 283 DSIK----------------------------SFLNISSDPATFIQGAVP--QILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 283 ~~~~----------------------------~~~~~~~~~~~~~~~a~~--~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
.++. +.+-+++-++.....|.. .++.....++++++.+++..+..++.+.
T Consensus 292 R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~ 371 (954)
T PRK12566 292 RAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAG 371 (954)
T ss_pred hhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3331 111122111222222222 2222234678899999999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~ 410 (422)
|++ .|+++. ...+|--+.+... ....++..+ +.+.||-++--. .+.+.||+. ++.++++.++..
T Consensus 372 l~~-~g~~~~---~~~fF~~~~v~~~-----~~~~~~~~~-a~~~~~n~r~~~----~~~~~~s~de~~~~~~~~~~~~~ 437 (954)
T PRK12566 372 LEA-KGIKRL---NRHFFDTLTLEVG-----GAQAAIIES-AEAARINLRILG----RGRLGVSLDETCDEATVARLFDI 437 (954)
T ss_pred HHh-cCCccc---cCCccceEEEEcc-----CCHHHHHHH-HHHCCCeeEEeC----CCeEEEEeCCCCCHHHHHHHHHH
Confidence 999 487733 2234433333321 024445444 455687776532 467888887 678999999988
Q ss_pred HH
Q 014603 411 MK 412 (422)
Q Consensus 411 l~ 412 (422)
+.
T Consensus 438 f~ 439 (954)
T PRK12566 438 FL 439 (954)
T ss_pred hc
Confidence 84
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=75.29 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=111.8
Q ss_pred CCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCC-Cccch----------HH
Q 014603 82 CYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRP-GFPYY----------EA 149 (422)
Q Consensus 82 ~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~-~~~~~----------~~ 149 (422)
.|+- .-|-+.|.+.-|+-++. ....-+..+. ++|.|+.+++..+++|||+.+.... -|... ..
T Consensus 59 GYGydD~GRdtLe~vyA~vf~a----E~a~VRpq~i-sGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~g 133 (416)
T COG4100 59 GYGYDDLGRDTLERVYAQVFGA----EAALVRPQII-SGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQG 133 (416)
T ss_pred CCCccccchhHHHHHHHHHhcc----ccceeeeeee-cchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcc
Confidence 5543 34555666666666643 1111122333 6688999999999999999876532 23222 22
Q ss_pred HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCC-CCCcccccCHHHHHHHHHHHHHc--CcEEEEccccc
Q 014603 150 RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP-GNPCGNVYTYQHLQKIAETAKKL--GIMVIADEVYD 226 (422)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~--~~~li~D~~~~ 226 (422)
..+.+|+..+.+++.++ ..+|.+.++..++++++++.+--. ....--.++.+++++++++.++- |+++++|.+|+
T Consensus 134 SL~dfgi~Y~~v~Lt~~--gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG 211 (416)
T COG4100 134 SLKDFGIKYKAVPLTAD--GKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYG 211 (416)
T ss_pred cHHHhCcceeecccccC--CcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccch
Confidence 34456677777777644 459999999999999998877643 22122236779999999999865 68999999999
Q ss_pred ccccCCCCCCCccccCCCCCeEEEecCccccCCCCc--eeEEEEee
Q 014603 227 HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW--RLGWLVTS 270 (422)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~--r~G~~~~~ 270 (422)
.+.-.-+ +. +.+.| ++.+|+-|. .+.|+ --||+.+.
T Consensus 212 EFvE~~E-Pt---~vGaD---liAGSLIKN-pGGgiaktGGYiaGk 249 (416)
T COG4100 212 EFVEEKE-PT---HVGAD---LIAGSLIKN-PGGGIAKTGGYIAGK 249 (416)
T ss_pred hhhhccC-cc---ccchh---hhccceeeC-CCCceeeccceeech
Confidence 8763321 22 22333 777888887 33332 13677664
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-05 Score=66.47 Aligned_cols=342 Identities=13% Similarity=0.038 Sum_probs=192.8
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC-CCCCCC------C-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA-RFNCYS------S-TVGILPARRAIADYLNRDLPYKLSPDDVYL 115 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~y~------~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~ 115 (422)
..+.|.|..+... ..|......|.+.++.= ...-|+ | ..+....-..++... +...++|.+
T Consensus 65 d~~~iYlcGNSLG-----LmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iV------GA~e~Evav 133 (465)
T KOG3846|consen 65 DKPVIYLCGNSLG-----LMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIV------GAQENEVAV 133 (465)
T ss_pred CCCeEEEeccccc-----cCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhc------cCCchhhhh
Confidence 4456777666533 34566666666665430 001111 1 233445556666666 457789999
Q ss_pred ecCHHHHHHHHHHHhcCCC---CEEEecCCCc----cchHHHHhhCCCeEE--EeeccC-CCCcccCHHHHHHhhcCC--
Q 014603 116 TLGCTQAIEVILTVLARPG---ANILLPRPGF----PYYEARATHSHLEVR--HFDLLP-AKGWEVDLDAVEALADEN-- 183 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~g---d~Vl~~~~~~----~~~~~~~~~~g~~~~--~~~~~~-~~~~~~d~~~l~~~~~~~-- 183 (422)
.++-|..+..++-++.+|- -+|+...-.| +.+....+..|..+. .+.+.| ++...+..+++.+.+.++
T Consensus 134 mNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngD 213 (465)
T KOG3846|consen 134 MNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGD 213 (465)
T ss_pred HhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCC
Confidence 9999999999998887765 3688766555 445566666676542 233333 233446677777777543
Q ss_pred -ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 184 -TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 184 -~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
..+++++..+.-||+.+ ++.+|-..-+..|+++=.|-+++. |.-+..+..++.| +.+....|.+....-
T Consensus 214 eiA~v~fSGvqyYTGQ~F---di~aIT~Agq~kgc~VGfDLAHAv----gNVpL~LHdWgVD---FACWCSYKYlnaGaG 283 (465)
T KOG3846|consen 214 EIALVCFSGVQYYTGQYF---DIGAITFAGQFKGCLVGFDLAHAV----GNVPLQLHDWGVD---FACWCSYKYLNAGAG 283 (465)
T ss_pred eEEEEEeecceeeccccc---chhhhhhcccCCCcEechhhhhhh----cCCceEEeecCCc---eEEEeeecccccCCC
Confidence 23345556688999997 466666555677999999999876 4333445555554 777777787432112
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHh-----------------hh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKS-----------------FL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRE 324 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 324 (422)
.+|-+....+..--+.|.+...+.. .. ...++|+.....++...|+...+-.+++++.+---
T Consensus 284 gIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~l 363 (465)
T KOG3846|consen 284 GIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLL 363 (465)
T ss_pred ccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhh
Confidence 2454544332211111222221111 00 11235555566666666665433345555544333
Q ss_pred HHHHHHHHhhcC-----------CCCCCCCCC----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC
Q 014603 325 TADICCDRLKEI-----------PCITCPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL 389 (422)
Q Consensus 325 ~~~~l~~~L~~~-----------~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 389 (422)
+..++...++.. +.+. .++| +.|.-+.+.+.. +...++.+| .++|+..-.- .
T Consensus 364 LTgYleyL~k~~~g~~~~~rt~Kl~~~-IiTP~~~~erGcQLsl~Fss-------p~~~vfqeL-~krGv~~DkR----~ 430 (465)
T KOG3846|consen 364 LTGYLEYLLKASKGYKHPLRTEKLFFT-IITPTSTDERGCQLSLYFSS-------PTPKVFQEL-HKRGVIGDKR----R 430 (465)
T ss_pred HHhHHHHHHHHhcccCchhhhcceeEE-EeCCcccccccceEEEEeCC-------CchHHHHHH-HHcCeecccc----C
Confidence 333333333321 1122 1233 224445555543 234555665 5669876442 2
Q ss_pred CCeEEEEec---cChHHHHHHHHHHHHHHHHhc
Q 014603 390 KDWLRITFA---VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 390 ~~~iRis~~---~~~~~l~~~~~~l~~~~~~~~ 419 (422)
++.||+.+. ++-.++.+++..|.++.+...
T Consensus 431 PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 431 PNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred CCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 688999986 677899999999999887654
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0007 Score=58.61 Aligned_cols=328 Identities=14% Similarity=0.131 Sum_probs=182.3
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHH-HHhhCCCCC------CCCC---CCCCHHHHHHHHHHHhhcCCCCCCCCCE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIV-HSVRSARFN------CYSS---TVGILPARRAIADYLNRDLPYKLSPDDV 113 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~-~~~~~~~~~------~y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i 113 (422)
...+|||+-|... .|..|...+. +.++-.... +-.+ ...+.+.+..+.++++ ++-+-+-+
T Consensus 5 ~~~vvnFaaGPAk------lp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLln----iPdn~~vl 74 (370)
T KOG2790|consen 5 PERVVNFAAGPAK------LPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLN----IPDNYKVL 74 (370)
T ss_pred ccceeecCCCccc------CCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHc----CCCceeEE
Confidence 5678999988633 3344444444 444321110 0001 1234566666777763 23333345
Q ss_pred EEecCHHHHHHHHHHHhc--CCC---CEEEecCCCccchHHHHhhCCCe-EEEeeccCCC-CcccCHHHHHHhhcCCceE
Q 014603 114 YLTLGCTQAIEVILTVLA--RPG---ANILLPRPGFPYYEARATHSHLE-VRHFDLLPAK-GWEVDLDAVEALADENTVA 186 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l~--~~g---d~Vl~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~ 186 (422)
++..|||.-+.++...++ +.| |.|++-...-..+..+ +.+|.. .+..+..+.. +--+|.+.|+. +++.+-
T Consensus 75 f~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EA-kk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~y 151 (370)
T KOG2790|consen 75 FLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEA-KKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASY 151 (370)
T ss_pred EEeCCCcccccccchhhhccccCCccceEEeccccHHHHHHH-HhhCCceEEeccccccccCcCCChhhccc--CCCccE
Confidence 667778888777766665 444 5666655444444433 344533 3333332211 11235555543 334456
Q ss_pred EEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEE
Q 014603 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 187 i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
+++|.-....|+-++.-. +-..+|.++|.|.+.-.+. .+.++..++ +++.+..|..|.+|+ ..
T Consensus 152 vyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSnflS----rpvDvsk~g-----vi~aGAQKN~G~aG~--Tv 214 (370)
T KOG2790|consen 152 VYYCANETVHGVEFDFIP------VNDPKGAVLVADMSSNFLS----RPVDVSKFG-----VIFAGAQKNVGPAGV--TV 214 (370)
T ss_pred EEEecCceeeceecCCCC------CCCCCCceEEEecccchhc----CCccchhcc-----eEEeccccccCcccc--EE
Confidence 777765556666542211 1225688999998876543 223444433 778889999999995 34
Q ss_pred EEeeCCCCcccchhHHHHHHh-------------hhhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHH
Q 014603 267 LVTSDPNGILQDSGIVDSIKS-------------FLNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDR 332 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~ 332 (422)
++.++ +++..... ......+++.+..+++.-.++... ..++....+.-.+..+.+.+.
T Consensus 215 vivr~--------dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~ 286 (370)
T KOG2790|consen 215 VIVRK--------DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDA 286 (370)
T ss_pred EEEeh--------hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44432 23322211 112334777777777766666533 455777777777888999999
Q ss_pred hhcCCCCC-CCCCCCC--ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHH
Q 014603 333 LKEIPCIT-CPKKPEG--SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDG 407 (422)
Q Consensus 333 L~~~~~~~-~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~ 407 (422)
+.+..++. |...|.. -+-+.+++.... -..+++...+++ ++.-..|+. .-+.+|-|+- .+.++.+++
T Consensus 287 iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~-----Le~eFLkeA~~~-~mv~LKGhR--SVGGiRASlYNAisv~~~q~L 358 (370)
T KOG2790|consen 287 IDNSNGFYRCPVEPSVRSRMNVPFRIEKDE-----LEAEFLKEAAKE-HMVQLKGHR--SVGGIRASLYNAISVEEVQKL 358 (370)
T ss_pred HHhcCCeEEcccchhhhhhcccceeecchH-----HHHHHHHHHHHh-hhhcccccc--ccccchhhhhccccHHHHHHH
Confidence 99875643 3333432 233444554321 234555555444 444444443 2467899986 688999998
Q ss_pred HHHHHHHHHH
Q 014603 408 LGRMKAFYDR 417 (422)
Q Consensus 408 ~~~l~~~~~~ 417 (422)
++-++++.+.
T Consensus 359 ~~~m~~F~k~ 368 (370)
T KOG2790|consen 359 AAFMKEFQKK 368 (370)
T ss_pred HHHHHHHHHh
Confidence 8888877654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0017 Score=62.65 Aligned_cols=301 Identities=15% Similarity=0.127 Sum_probs=167.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH-HHHH---HHHHHHh-cCCC----CEEEecCCCccchHHHHhhCCCe
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGC-TQAI---EVILTVL-ARPG----ANILLPRPGFPYYEARATHSHLE 157 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~-~~a~---~~~~~~l-~~~g----d~Vl~~~~~~~~~~~~~~~~g~~ 157 (422)
+|+.++-..+-++|..- ..-|.+.+.+++ .++- ..++++. ..+| ..-+++-..|..-...+...|.+
T Consensus 578 qGY~~lf~~Le~~Lc~i----TG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Magmk 653 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEI----TGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMK 653 (1001)
T ss_pred hhHHHHHHHHHHHhhee----ecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCE
Confidence 45566666666666442 244667665442 2222 2234443 2333 24467778887778888899999
Q ss_pred EEEeeccCCCCcccCHHHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC
Q 014603 158 VRHFDLLPAKGWEVDLDAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP 234 (422)
Q Consensus 158 ~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~ 234 (422)
++.+..+.. +.+|..+|++...+ +-.++.++.|+. .|+-= +.+++++++.++||--|..|.+-..-..+
T Consensus 654 vvpV~~~~~--G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE--~~i~d~cd~iHehGGQVYlDGANMNAqVG--- 725 (1001)
T KOG2040|consen 654 VVPVGCDAN--GNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFE--EGIDDICDIIHEHGGQVYLDGANMNAQVG--- 725 (1001)
T ss_pred EEEeeccCC--CCccHHHHHHHHHHhhhhhheeEEecccc-ccccc--ccHHHHHHHHHhcCCEEEecCCCccceec---
Confidence 998887643 45899999876544 456778888875 45441 56899999999999999999986432211
Q ss_pred CCCccccCCCCCeEEEecCccccCCC----CceeEEEEeeCCCCcccchhHHHHHHh--------------hhhhccC--
Q 014603 235 FVPMGVFGSIVPVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDSGIVDSIKS--------------FLNISSD-- 294 (422)
Q Consensus 235 ~~~~~~~~~~~~~i~i~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-- 294 (422)
......++.| +.=--++|+|+.| |..+|=+.+.. .+...+.. ....+..
T Consensus 726 lc~pGd~GaD---V~HLNLHKTFcIPHGGGGPg~gPIgVK~--------HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~ 794 (1001)
T KOG2040|consen 726 LCRPGDIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKK--------HLAPFLPSHPVVSPGRPEDTSPVGSVSAAPW 794 (1001)
T ss_pred ccCCcccccc---ceeecccceeeecCCCCCCCCCccchhh--------hccccCCCCCccCCCCCCCCCCccceeccCC
Confidence 1122233333 2223456776433 44455444321 11111110 0000000
Q ss_pred cch---HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE---EEEecCcccccCCCCHHH
Q 014603 295 PAT---FIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF---VMVKLNYSLLEGINSDME 368 (422)
Q Consensus 295 ~~~---~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~ 368 (422)
.+. +..++..+.+. ..++.+..+..--+..++.++|+.+ .+++.....|.. +.+.+...+.....++.+
T Consensus 795 Gsa~ILpISwaYikmMG---~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~fK~~agieavD 869 (1001)
T KOG2040|consen 795 GSALILPISWAYIKMMG---SGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPFKKTAGIEAVD 869 (1001)
T ss_pred CcceeehhHHHHHHHhc---ccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhhccccCCcHHH
Confidence 111 12233333333 3445555555556778888889875 222223333321 223332222112236778
Q ss_pred HHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 369 FALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 369 ~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
++.+| ..+|..... -.+...+.+.|-++ -+.+|+|++++++..+-++
T Consensus 870 vAKRL-~DYgFHaPT-mswPV~gtLMIEPTESE~k~ElDRfcdAliSIreE 918 (1001)
T KOG2040|consen 870 VAKRL-MDYGFHAPT-MSWPVAGTLMIEPTESEDKAELDRFCDALISIREE 918 (1001)
T ss_pred HHHHH-HhccCCCCc-cccccCCceEeccCccccHHHHHHHHHHHHHHHHH
Confidence 87776 678987643 33445777888876 4568999999988765444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.073 Score=56.42 Aligned_cols=252 Identities=12% Similarity=0.128 Sum_probs=142.9
Q ss_pred CccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcC
Q 014603 25 GITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104 (422)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~ 104 (422)
+..++.+++.++.-. ..-..-+||+-.+-+.- -..-| ....+...+.+.....|.++.|...+|..||.|+....
T Consensus 369 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1082)
T PLN02672 369 PNQVKTIFKFLKNGF--HEVSGSLDLSFEDESVA--DEKIP-FLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYH 443 (1082)
T ss_pred chHHHHHHHHHHccc--hhhhhhccccccccccc--hhhcc-HHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhc
Confidence 455677776554221 11234566765442210 01112 34667777777777889999999999999999999999
Q ss_pred CCCCCCCCEEEecCHHHHHHHHHHHhc------CCCCEEEecCCCccchHHHHhhCC--------CeEEEeeccCCCCcc
Q 014603 105 PYKLSPDDVYLTLGCTQAIEVILTVLA------RPGANILLPRPGFPYYEARATHSH--------LEVRHFDLLPAKGWE 170 (422)
Q Consensus 105 ~~~~~~~~i~~~~g~~~a~~~~~~~l~------~~gd~Vl~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~ 170 (422)
+++..+++|++.++-..|++.+++.+. ..+-+-.++ .-|.......+ ..+..+. .|-
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---- 514 (1082)
T PLN02672 444 HIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP----KKWLTSLAIENATSDSKSDDVITVIE-APR---- 514 (1082)
T ss_pred CCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC----HHHHhHhhhhcccccCccCCeEEEEe-CCC----
Confidence 999999999999999999998887653 222121111 11222222222 1111111 111
Q ss_pred cCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccC---CCC
Q 014603 171 VDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFG---SIV 245 (422)
Q Consensus 171 ~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~---~~~ 245 (422)
..+.+.+++++ ++++++..-... -..+....+.|...+++-|+.++.|.+-. .+.-.......++-+. ...
T Consensus 515 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1082)
T PLN02672 515 -QSDLVIELIKKLKPQVVVTGMADF---EMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSLPGSNGVLKYLAGHPLPS 590 (1082)
T ss_pred -cchHHHHHHHhCCCeEEEEeccch---hhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccCCCcccHHHHhcCCCCCc
Confidence 11234444443 344444332222 12233568999999999999999998843 2211111111111111 112
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQG 301 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 301 (422)
+..++.++-|.--.+.+-+.+++.-+ ..+...+..... ..+..+.++|+
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1082)
T PLN02672 591 HAAIICGLVKNQVYSDLEVAFVISEN-------EAVLKALSKTGEVLEGRTAIISQF 640 (1082)
T ss_pred chhHhhhhhhccccccceEEEEecCc-------HHHHHHHHHHHHhhccchHHHHHH
Confidence 45667788888667899999988643 345555554432 23344555554
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.015 Score=50.01 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCC-CEEEecCCCccchHHHHhhCCCeEEEeec-cCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHH
Q 014603 132 RPG-ANILLPRPGFPYYEARATHSHLEVRHFDL-LPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKI 208 (422)
Q Consensus 132 ~~g-d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i 208 (422)
+|. ..|+-+.-.-.+.....-..|.+++.+.- ...+....|++.++..+.+ +...++..+.....=..-+++.+++|
T Consensus 100 rpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leai 179 (432)
T KOG3843|consen 100 RPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAI 179 (432)
T ss_pred CCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHH
Confidence 344 34443433333333444457877665543 2223344578888777654 23323222221111112244789999
Q ss_pred HHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC-eEEEecCccccCCC
Q 014603 209 AETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVP 260 (422)
Q Consensus 209 ~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~s~sK~~~~~ 260 (422)
..+|-.|++.-|+..+|+.-. .+-...+..-..-.+ ..++.|+.|.|..|
T Consensus 180 aaica~~diphivnnayglqs--ee~i~~iaa~~~~grida~vqsldknf~vp 230 (432)
T KOG3843|consen 180 AAICAAHDIPHIVNNAYGLQS--EECIHKIAAAAECGRIDAFVQSLDKNFMVP 230 (432)
T ss_pred HHHHHccCchhhhccccccch--HHHHHHHHHHhhhccHHHHHHHhhhcceee
Confidence 999999999999999997521 000000000000011 15678999998765
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.34 Score=47.52 Aligned_cols=261 Identities=16% Similarity=0.174 Sum_probs=130.9
Q ss_pred CCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCCccchHHHHhh----CCCeEEEeeccCCCCcccCHHHHHHhhcCCce
Q 014603 111 DDVYLTLGCTQAIEVILTVL-ARPGANILLPRPGFPYYEARATH----SHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185 (422)
Q Consensus 111 ~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 185 (422)
.+.-+-.-||+|-++...+. ..++.+.++...+|+-.....+. +|+++.. .|+++... ..++..
T Consensus 181 aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~----------~~~~~~~~-s~~~v~ 249 (1001)
T KOG2040|consen 181 ANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVV----------SDIKEADY-SSKDVS 249 (1001)
T ss_pred cchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEe----------cCHHHhhc-ccccee
Confidence 34433334455544443332 23456799999999876554442 2333221 12222221 234566
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeE
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 265 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G 265 (422)
.+++-.|.. -|.+. +..++++.++..|.+++.-.-- +..+ ...+..+++.| |.++|...+ |.| +|
T Consensus 250 gvlvQYP~t-~G~i~---d~~el~~~a~~~~s~vv~atDL--LaLt--iLrpPgefGaD---IavGSsQRF-GVP---lG 314 (1001)
T KOG2040|consen 250 GVLVQYPDT-EGSVL---DFDELVELAHANGSLVVMATDL--LALT--ILRPPGEFGAD---IAVGSSQRF-GVP---LG 314 (1001)
T ss_pred EEEEEcCCC-CCccc---CHHHHHHHhhccCceEEEeehh--hHHH--ccCChhhcCce---eeecccccc-Ccc---cc
Confidence 677777765 56663 5777788888988876632111 1111 11123345544 778776665 433 33
Q ss_pred EE-------Eee--------------CCCCcccchhHHHHHHhhh-h--hc-cCcchHHHHHHHH----HHhh-chHHHH
Q 014603 266 WL-------VTS--------------DPNGILQDSGIVDSIKSFL-N--IS-SDPATFIQGAVPQ----ILEK-TEEEFF 315 (422)
Q Consensus 266 ~~-------~~~--------------~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~a~~~----~l~~-~~~~~~ 315 (422)
|- .+. ..+ ...++.+.-.+...- + .. .+.+.-...|+.+ .... +....+
T Consensus 315 YGGPHAaFfAv~~~l~R~mPGRiiGvtkD-~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL 393 (1001)
T KOG2040|consen 315 YGGPHAAFFAVSESLVRMMPGRIIGVTKD-ALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGL 393 (1001)
T ss_pred CCCchHHHHHHHHHHHhhCCCceEeeeec-ccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHH
Confidence 31 110 000 000111222221110 0 00 0111111111111 1111 235778
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEE
Q 014603 316 SKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI 395 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi 395 (422)
+++.+++....-.|...|++. +.++... .+|-.+.+..+. +.+++..+.+++ +|-++-- ..+.+-+
T Consensus 394 ~~IArrvh~~T~~l~~~l~~a-ghel~~k---~fFDTLkI~~~~-----s~~~~l~rA~~~-~iNlr~~----ed~tigv 459 (1001)
T KOG2040|consen 394 KEIARRVHNLTLILAEGLKNA-GHELQHK---PFFDTLKIRCGC-----SAEEVLDRAAKR-QINLRLV----EDGTIGV 459 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-chhhccc---cccceEEEEecC-----cHHHHHHHHHhh-cCceEEe----ecCceEE
Confidence 999999999999999999976 4442322 245444443321 356666665444 5544321 2567888
Q ss_pred Eec--cChHHHHHHHHHHH
Q 014603 396 TFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 396 s~~--~~~~~l~~~~~~l~ 412 (422)
++. ++++|++.++..+.
T Consensus 460 slDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 460 SLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred eecccccHHHHHHHHHHHc
Confidence 886 67889999888765
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.74 E-value=9.2 Score=32.71 Aligned_cols=99 Identities=16% Similarity=0.283 Sum_probs=64.7
Q ss_pred CEEEecCHHHHHHHHHHHhcCCCCEEE---e--cCCC--c-------cchHHHHhhCCCeEEEeeccCCCCcccCHHHHH
Q 014603 112 DVYLTLGCTQAIEVILTVLARPGANIL---L--PRPG--F-------PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177 (422)
Q Consensus 112 ~i~~~~g~~~a~~~~~~~l~~~gd~Vl---~--~~~~--~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 177 (422)
-+.+.+||-.++.++..++. .|..|. + ++.. | ......++..|+++......-+ ..-..++|.
T Consensus 3 ~~aL~SGGKDS~~Al~~a~~-~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~ 79 (223)
T COG2102 3 VIALYSGGKDSFYALYLALE-EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK 79 (223)
T ss_pred EEEEEecCcHHHHHHHHHHH-cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence 46788999999888777763 443322 1 2111 2 1224566677888776665321 223566777
Q ss_pred HhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEE
Q 014603 178 ALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220 (422)
Q Consensus 178 ~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li 220 (422)
+.+.. +..+++ +|.+++..+...+-++|++.|+.++
T Consensus 80 ~~l~~l~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~ 116 (223)
T COG2102 80 EALRRLKVDGIV-------AGAIASEYQKERVERLCEELGLKVY 116 (223)
T ss_pred HHHHhCcccEEE-------EchhhhHHHHHHHHHHHHHhCCEEe
Confidence 76654 334555 8999999999999999999988765
|
|
| >COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.40 E-value=18 Score=32.96 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=37.2
Q ss_pred cccCHHHHHHhhc---C--CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc
Q 014603 169 WEVDLDAVEALAD---E--NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227 (422)
Q Consensus 169 ~~~d~~~l~~~~~---~--~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~ 227 (422)
..++.+++++.++ . ...-+++.+.+=|.|.. .+...+|+++|++.|..+++|..-..
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~--~d~y~~li~~~~~~g~~vilD~Sg~~ 170 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVP--PDAYAELIRILRQQGAKVILDTSGEA 170 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCC--HHHHHHHHHHHHhcCCeEEEECChHH
Confidence 3456565554332 2 12223444555566654 47899999999999999999987654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 422 | ||||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 4e-74 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 1e-72 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 2e-48 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 1e-33 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 4e-24 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 4e-24 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 4e-24 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 1e-23 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 8e-21 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 1e-20 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 6e-20 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 9e-20 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 1e-19 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-19 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-19 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 1e-19 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 5e-19 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 7e-19 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 3e-18 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-17 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 2e-17 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 8e-17 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 8e-17 | ||
| 1wst_A | 417 | Crystal Structure Of Multiple Substrate Aminotransf | 3e-16 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 1e-15 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 2e-15 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 5e-15 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 6e-15 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 6e-15 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 8e-15 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 8e-15 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 8e-15 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 8e-15 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 1e-14 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 3e-14 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 4e-14 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 4e-14 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 9e-14 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 4e-13 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 5e-12 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 8e-12 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 2e-11 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 6e-11 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 1e-10 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 1e-10 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 2e-10 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 3e-10 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 9e-10 | ||
| 4ge7_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-09 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 2e-09 | ||
| 4gdy_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 4e-09 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 5e-09 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 8e-09 | ||
| 3ue8_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 2xh1_A | 425 | Crystal Structure Of Human Kat Ii-Inhibitor Complex | 2e-08 | ||
| 2r2n_A | 425 | The Crystal Structure Of Human Kynurenine Aminotran | 2e-08 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 2e-08 | ||
| 2qlr_A | 425 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-08 | ||
| 2vgz_A | 427 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-08 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 8e-08 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 9e-08 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 1e-07 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 2e-07 | ||
| 3g7q_A | 417 | Crystal Structure Of Valine-Pyruvate Aminotransfera | 2e-07 | ||
| 1d2f_A | 390 | X-Ray Structure Of Maly From Escherichia Coli: A Py | 3e-07 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 3e-07 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 4e-07 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 4e-07 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 1e-06 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 1e-06 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 2e-06 | ||
| 3euc_A | 367 | Crystal Structure Of Histidinol-Phosphate Aminotran | 9e-06 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 1e-05 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 1e-05 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 1e-05 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 6e-05 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 7e-05 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 9e-05 | ||
| 3if2_A | 444 | Crystal Structure Of Putative Amino-Acid Aminotrans | 1e-04 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 3e-04 |
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425 | Back alignment and structure |
|
| >pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425 | Back alignment and structure |
|
| >pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta (Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A Resolution Length = 417 | Back alignment and structure |
|
| >pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|3IF2|A Chain A, Crystal Structure Of Putative Amino-Acid Aminotransferase (Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50 A Resolution Length = 444 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 502 bits (1294), Expect = e-178
Identities = 139/412 (33%), Positives = 225/412 (54%), Gaps = 8/412 (1%)
Query: 10 NQWGFKANEELK-TASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAV 68
+ W + ++ K T + I R +++++ N + +I L GDP+ F + T
Sbjct: 22 SMWSVRPSDMAKKTFNPI--RAIVDNMKVK--PNPNKTMISLSIGDPTVFGNLPTDPEVT 77
Query: 69 DAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILT 128
A+ ++ S ++N Y+ ++G L +R IA Y + L DV LT GC+QAI++ L
Sbjct: 78 QAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLA 136
Query: 129 VLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV 188
VLA PG NIL+PRPGF Y+ A +EV+ ++LLP K WE+DL +E L DE T L+
Sbjct: 137 VLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLI 196
Query: 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL 248
+ NP NPCG+V++ +HLQKI A + + ++ADE+Y + F + + P+ + VP+L
Sbjct: 197 VNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPIL 256
Query: 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILE 308
+ G ++KRW+VPGWRLGW++ D I + I D + P T +QGA+ IL
Sbjct: 257 SCGGLAKRWLVPGWRLGWILIHDRRDIFGNE-IRDGLVKLSQRILGPCTIVQGALKSILC 315
Query: 309 KTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDME 368
+T EF+ L+ AD+C L IP + +P G+M++MV + +D+E
Sbjct: 316 RTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPV-RPSGAMYLMVGIEMEHFPEFENDVE 374
Query: 369 FALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
F +L E+SV LP +++R+ V + + R++ F ++H
Sbjct: 375 FTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQHYH 426
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 475 bits (1225), Expect = e-167
Identities = 119/422 (28%), Positives = 203/422 (48%), Gaps = 19/422 (4%)
Query: 10 NQWGFKANEELK-TASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAV 68
+ W + + I R V ++ +P+I L GDP+ + T++ +
Sbjct: 2 SSWDVSMSNHAGLVFNPI--RTVSDNAKP---SPSPKPIIKLSVGDPTLDKNLLTSAAQI 56
Query: 69 DAIVHSVRSARFNCYSSTVGILPARRAIADYLNR------DLPYKLSPDDVYLTLGCTQA 122
+ ++ S N Y TVG AR A+A + +L + D+V L G +
Sbjct: 57 KKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHG 116
Query: 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE 182
I + +T + G L+P+PGFP+YE + + ++ P WE DLD + L D+
Sbjct: 117 ILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD 176
Query: 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG----NTPFVPM 238
T L++ NP NPCG+ ++ +H++ I A++L + + +DE+Y + F N F +
Sbjct: 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSV 236
Query: 239 GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATF 298
F + VP + LG +K +VPGWRLGWL+ DP+G ++ +K + P T
Sbjct: 237 ADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPS--FLEGLKRVGMLVCGPCTV 294
Query: 299 IQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYS 358
+Q A+ + L T +E +I + E+A + + E + P G+M++M +++
Sbjct: 295 VQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPT-MPRGAMYLMSRIDLE 353
Query: 359 LLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRH 418
I +D+EF KL +EE+V VLPG + R+T + + R+KAF RH
Sbjct: 354 KYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRH 413
Query: 419 AK 420
A
Sbjct: 414 AA 415
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 6e-73
Identities = 102/376 (27%), Positives = 169/376 (44%), Gaps = 12/376 (3%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
I L GDP F F+ +A +++ N Y + G+ R+AI + R
Sbjct: 41 IRLNIGDPVKF-DFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVD 98
Query: 108 LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK 167
++PDDV +T T+A+++I L PG IL+P P +P Y + + + +
Sbjct: 99 ITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE 158
Query: 168 GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227
W+ D+D + + T A+ +INP NP G +Y + L++I A + I VI+DE+YD
Sbjct: 159 DWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDL 218
Query: 228 LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS 287
+ + + G VPV+ + +SK + GWRLG++ DP L + + ++I
Sbjct: 219 MTYEGE-HISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSE--VREAIDR 275
Query: 288 FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347
I P T Q A L ++ + L+E D RL EIP I+ KP+G
Sbjct: 276 LARIRLCPNTPAQFAAIAGL-TGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTT-KPQG 333
Query: 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK--DWLRITFAVEPSALE 405
+ ++ K+ + +D EF L + V+ + G G R F LE
Sbjct: 334 AFYIFPKIE---VGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILE 390
Query: 406 DGLGRMKAFYDRHAKK 421
+ + R + F K+
Sbjct: 391 EAMDRFEKFMKERLKE 406
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 4e-67
Identities = 90/403 (22%), Positives = 165/403 (40%), Gaps = 46/403 (11%)
Query: 59 PSFRT-ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLN-RDLPYKLSPDDVYLT 116
PSF A I+ + YS++ G+ R +A Y+ RD PD++YLT
Sbjct: 100 PSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLT 159
Query: 117 LGCTQAIEVILTVLARPG----ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172
G + I IL +L G +++P P +P Y A + ++ L W ++
Sbjct: 160 TGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALN 219
Query: 173 LDAVEALADENTV-----ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227
++ + E L IINPGNP G V + + ++ + A + + ++ADEVY
Sbjct: 220 VNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQD 279
Query: 228 LAF-GNTPFVPM--------GVFGSIVPVLTLGSISKRWIVP-GWRLGWLVTSDPNGILQ 277
+ + F + S V + + S SK ++ G+R G++ +
Sbjct: 280 NVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINL----- 334
Query: 278 DSGIVDSIKSFLNISSDPATFIQGAV------PQILEKTEEEFFSKITDI---LRETADI 328
I + L++ P Q A+ P E++ E+F + + L + A +
Sbjct: 335 HPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKL 394
Query: 329 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-------EGINSDMEFALKLAKEESVIV 381
D ++P I C +G+M+ ++ + DM + +KL +E + V
Sbjct: 395 TEDLFNQVPGIHCN-PLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICV 453
Query: 382 LPGITVGLKDW---LRITFAVEPSALEDGLGRMKAFYDRHAKK 421
+PG G ++ R+T L+ L ++K F+ +K
Sbjct: 454 VPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEK 496
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 5e-65
Identities = 82/387 (21%), Positives = 156/387 (40%), Gaps = 41/387 (10%)
Query: 70 AIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTV 129
I+ + YS + GI R AIA + + + DD++LT G + + +++ +
Sbjct: 117 QILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQL 176
Query: 130 LAR-PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------ 182
L R IL+P P +P Y A + + L + GW ++ V+ ++
Sbjct: 177 LIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGI 236
Query: 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF-GNTPFV----- 236
N ALV+INPGNP G V ++ I + K G++++ADEVY + N F
Sbjct: 237 NVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKI 296
Query: 237 --PMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS 293
+G +P+++ S+SK + G R G+ + + + + I +++
Sbjct: 297 VRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGF-----SAPVREQIYKIASVNL 351
Query: 294 DPATFIQGAV------PQILEKTEEEFFSKITDI---LRETADICCDRLKEIPCITCPKK 344
Q P+ +++ + ++ I L A ++ ITC +
Sbjct: 352 CSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN-E 410
Query: 345 PEGSMFVMVKLNYSL-------LEGINSDMEFALKLAKEESVIVLPGITVGLKDW---LR 394
EG+M+V ++ D +AL+L + ++V+PG G R
Sbjct: 411 AEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFR 470
Query: 395 ITFAVEPSALEDGLGRMKAFYDRHAKK 421
T + + + R F++ +
Sbjct: 471 CTILPQEDKIPAVISRFTVFHEAFMSE 497
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 1e-62
Identities = 76/361 (21%), Positives = 146/361 (40%), Gaps = 24/361 (6%)
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
F + + ++ + N Y G +++++ + P+ + T G T
Sbjct: 38 FALSGTNPEDFYKKLQGTKLN-YGWIEGSPAFKKSVSQLYTG-----VKPEQILQTNGAT 91
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180
A ++L L PG +++ P + EV + + GW DL+ + L
Sbjct: 92 GANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLI 151
Query: 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240
T + I N NP G V +L+++ E A ++G +++DEVY + + P + V
Sbjct: 152 RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSII-EV 210
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
+ + + S+SK + +PG R+GW+ + + + + + I F
Sbjct: 211 YDK---GIAVNSLSKTYSLPGIRIGWVAA--NHQVTDI---LRDYRDYTMIC--AGVFDD 260
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
L +E + IL E I ++E P ++ +P VK+ +
Sbjct: 261 LVAQLALAHY-QEILERNRHILEENLAILDQWIEEEPLVSYI-RPAVVSTSFVKIAVDM- 317
Query: 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
+F L+L +E V+++PG ++R+ FA E L GL ++ F R K
Sbjct: 318 ----PMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRRFDK 373
Query: 421 K 421
+
Sbjct: 374 E 374
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 9e-58
Identities = 98/395 (24%), Positives = 155/395 (39%), Gaps = 46/395 (11%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
+ LG G FP + A ++ N Y G P RRAIA R
Sbjct: 28 VNLGQG----FPDEDGPPKMLQAAQDAIA-GGVNQYPPGPGSAPLRRAIAAQRRRHFGVD 82
Query: 108 LSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL-LP 165
P+ +V +T+G T+AI + L PG+ +LL P + Y + L
Sbjct: 83 YDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPD 142
Query: 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
+G+ +D DA+ T AL+I +P NP G V + L IAE A ++VI DEVY
Sbjct: 143 GRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVY 202
Query: 226 DHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280
+HL F + +P+ F +T+ S +K + GW++GW P ++
Sbjct: 203 EHLVFDHARHLPLAGF----DGMAERTITISSAAKMFNCTGWKIGWACG--PAELIAG-- 254
Query: 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI--PC 338
V + K +L+ Q AV L+ E+ + + + + LR D L EI
Sbjct: 255 -VRAAKQYLSYVG--GAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEIGFAV 310
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG-------------I 385
G+ F+ + L G + EF L ++ V +P
Sbjct: 311 H----DSYGTYFLCA--DPRPL-GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQ 363
Query: 386 TVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
+R TF L++ + R+ +R A
Sbjct: 364 ADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPAT 398
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 2e-56
Identities = 67/425 (15%), Positives = 126/425 (29%), Gaps = 45/425 (10%)
Query: 24 SGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCY 83
+ I R ++ L+ NL K + G P + ++ + +R + Y
Sbjct: 26 ASI--RDLVA-LVTNLEKATGTKFCRMEMGVPG----LPAPQIGIETEIQKLREGVASIY 78
Query: 84 SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR----PGANILL 139
+ G+ ++ + + + + T+G Q V V R L
Sbjct: 79 PNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLF 138
Query: 140 PRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNV 199
PGF + + + FDL +G ++ L +++ NP NP
Sbjct: 139 IDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQC 198
Query: 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-------VLTLGS 252
T + L+ I E A K ++VI D Y + F + G + S
Sbjct: 199 MTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYILALS 257
Query: 253 ISKRWIVPGWRLGWLVTSDP----------NGILQDSGIVDSIKSFL-NISSDPATFIQG 301
SK + G R+G L+ S + S L +SS Q
Sbjct: 258 SSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQW 317
Query: 302 AVPQILEKTEE--EFFSKITDILRETADICCDRLKE-----IPCITCPKKPEGSMFVMVK 354
+ +L+ + F A I + + +P F
Sbjct: 318 GMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN-EPLADGFY--- 373
Query: 355 LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD--WLRITFAVEPSALEDGLGRMK 412
+++ + K + + T ++ T + S D R++
Sbjct: 374 --FTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQ 431
Query: 413 AFYDR 417
Sbjct: 432 MLNAE 436
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 3e-56
Identities = 94/379 (24%), Positives = 150/379 (39%), Gaps = 37/379 (9%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
I L G FP F + + H V N Y+ G+ R AIA R Y+
Sbjct: 33 INLSQG----FPDFDGPRYLQERLAHHVAQGA-NQYAPMTGVQALREAIAQKTERLYGYQ 87
Query: 108 LSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166
D D+ +T G T+A+ +T L R G ++ P + Y S V+ L P
Sbjct: 88 PDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP- 146
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
+ VD AL E T +++ P NP V+ + + I VI+DEVY+
Sbjct: 147 PHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYE 206
Query: 227 HLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281
H+ F + P + + S K + + GW++G+ V P I +
Sbjct: 207 HINFSQQGHASVLAH----PQLRERAVAVSSFGKTYHMTGWKVGYCVA--PAPISAE--- 257
Query: 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI--PCI 339
+ + +L S T Q A+ +L E E + + D R+ DI + L E +
Sbjct: 258 IRKVHQYLTFSV--NTPAQLALADMLRA-EPEHYLALPDFYRQKRDILVNALNESRLEIL 314
Query: 340 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRI 395
EG+ F++V +YS + D+EF L +E V +P +R+
Sbjct: 315 ----PCEGTYFLLV--DYSAV-STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRL 367
Query: 396 TFAVEPSALEDGLGRMKAF 414
FA + S L R++
Sbjct: 368 CFAKKESTLLAAAERLRQL 386
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 7e-56
Identities = 78/387 (20%), Positives = 146/387 (37%), Gaps = 40/387 (10%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
R +I + G P AV+A+ S+ + Y+ +G+ R+ IA
Sbjct: 31 RRIIHMEVGQPG----TGAPRGAVEALAKSLETDALG-YTVALGLPALRQRIARLYGEWY 85
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
L P V +T G + + T L G + + PG+P Y L
Sbjct: 86 GVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTA 145
Query: 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224
P + L + L++ +P NP G + + + + E A+ G I+DE+
Sbjct: 146 PENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEI 202
Query: 225 YDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
Y + + + + + S SK + + GWR+GW+V P ++ +V+
Sbjct: 203 YHGIEYEAKAVTALELTDECY---VINSFSKYFSMTGWRVGWMVV--PEDQVR---VVER 254
Query: 285 IKSFLNISSDPATFIQ-GAV-----PQILEKTEEEFFSKITDILRETADICCDRLKEIPC 338
I + I Q A+ L+ + + + + +RL +
Sbjct: 255 IAQNMFIC--APHASQVAALAALDCDAELQANLDVY--------KANRKLMLERLPKAGF 304
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI---TVGLKDWLRI 395
P+G+ +V + S L + FA ++ ++ V V PG+ LR
Sbjct: 305 TRIA-PPDGAFYVYA--DVSDL--TDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRF 359
Query: 396 TFAVEPSALEDGLGRMKAFYDRHAKKQ 422
++A + +E+GL R++AF +
Sbjct: 360 SYARATADIEEGLDRLEAFMQARGEGH 386
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 2e-54
Identities = 73/401 (18%), Positives = 148/401 (36%), Gaps = 42/401 (10%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-----YSSTVGILPARRAIADYLNR 102
I +G + + + + + G+ R+AIA ++ +
Sbjct: 39 IQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEK 98
Query: 103 --DLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT-HSHLEVR 159
+ P+ V + G T A E I+ LA PG L+P P +P + + +++
Sbjct: 99 TRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLI 158
Query: 160 HFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNVYTYQHLQKIAETAK 213
+ +++ AV+ + L++ NP NP G L+ +
Sbjct: 159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN 218
Query: 214 KLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP--------VLTLGSISKRWIVPGWRLG 265
+ I ++ DE+Y F FV + V + S+SK +PG+R+G
Sbjct: 219 QHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVG 278
Query: 266 WLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILR 323
+ + + + + + SF +S+ Q + +L + + F + L
Sbjct: 279 IIYSFNDDVV----NCARKMSSFGLVST----QTQYFLAAMLSDEKFVDNFLRESAMRLG 330
Query: 324 ETADICCDRLKE--IPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVI 380
+ + L+ I C+ K +F + L L E +S+M + + +
Sbjct: 331 KRHKHFTNGLEVVGIKCL----KNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLN 386
Query: 381 VLPGITVGLKD--WLRITFAV-EPSALEDGLGRMKAFYDRH 418
V PG + ++ W R+ FA + ++ L R++ F
Sbjct: 387 VSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE 427
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 9e-54
Identities = 90/410 (21%), Positives = 153/410 (37%), Gaps = 49/410 (11%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
KN R LI LG G F S+ A+ ++ N YS T G ++
Sbjct: 53 KNQGRELINLGQG----FFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLY 108
Query: 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH 160
+ +L ++V +T G + I L L G +++ P F Y +V +
Sbjct: 109 SPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVY 168
Query: 161 FDLLP----------AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAE 210
+ P + W +D + E T A++I P NP G V+T + L +
Sbjct: 169 VPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGN 228
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLG 265
K +++I+DEVY+HL F ++ ++ P LT+GS K + GWR+G
Sbjct: 229 ICVKHNVVIISDEVYEHLYFTDSFTRIA----TLSPEIGQLTLTVGSAGKSFAATGWRIG 284
Query: 266 WLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRE 324
W V S +L + + +S + +Q A + + +F K+
Sbjct: 285 W-VLSLNAELLSY---AAKAHTRICFAS--PSPLQEACANSINDALKIGYFEKMRQEYIN 338
Query: 325 TADICCDRLKEIPCITCPKKPEGSMFVMV----------KLNYSLLEGINSDMEFALKLA 374
I E+ + PEG+ FV+V + D + L
Sbjct: 339 KFKIFTSIFDELG-LPYT-APEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLI 396
Query: 375 KEESVIVLPGI-------TVGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417
E V+ +P ++ LR + + LE+ + R+K D
Sbjct: 397 NELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKLLKDY 446
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 3e-53
Identities = 81/402 (20%), Positives = 157/402 (39%), Gaps = 41/402 (10%)
Query: 48 IPLGHGDPSA---FPSFRTASVAVDAIVHSVRSARFN---CYSSTVGILPARRAIADYLN 101
I +G + A A + F + G+ ++A+ D++
Sbjct: 41 IQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMA 100
Query: 102 --RDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFP-YYEARATHSHLEV 158
R P+ + LT G T A E + LA PG +L+P P +P + + +E+
Sbjct: 101 EIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEI 160
Query: 159 RHFDLLPAKGWEVDLDAVEA------LADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
+ G+++ A+E + +++ NP NP G T L +
Sbjct: 161 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFV 220
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP----------VLTLGSISKRWIVPGW 262
+ GI +I+DE+Y AF + F+ + V + S+SK +PG+
Sbjct: 221 EDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF 280
Query: 263 RLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDIL 322
R+G + ++D + + SF +SS + A+ + T + + ++ L
Sbjct: 281 RVGAIYSNDDMVV----AAATKMSSFGLVSS-QTQHLLSAMLSDKKLT-KNYIAENHKRL 334
Query: 323 RETADICCDRLKE--IPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESV 379
++ L++ I C+ +F V + + L ++ME K+ E +
Sbjct: 335 KQRQKKLVSGLQKSGISCL----NGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHL 390
Query: 380 IVLPGITVGLKD--WLRITFA-VEPSALEDGLGRMKAFYDRH 418
+ PG + + W R+ FA + L+ + R+KAF +
Sbjct: 391 NISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 432
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 3e-53
Identities = 96/385 (24%), Positives = 163/385 (42%), Gaps = 47/385 (12%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
+ LG G FPS ++A+ ++ R + Y+ G+ R A+A+ +
Sbjct: 28 VNLGQG----FPSNPPPPFLLEAVRRAL--GRQDQYAPPAGLPALREALAEEFAVE---- 77
Query: 108 LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL-LPA 166
P+ V +T G T+A+ V+L L PG +++ P F Y A + + R L L
Sbjct: 78 --PESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTP 135
Query: 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
+G+ +DL A+E T AL++ P NP G V+ + L+ IA A+ + +I+DEVYD
Sbjct: 136 EGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYD 195
Query: 227 HLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
L +G P P T+GS KR G+R+GW+V P + +
Sbjct: 196 ELYYGERPRRLR----EFAPERTFTVGSAGKRLEATGYRVGWIVG--PKEFMPR---LAG 246
Query: 285 IKSFLNISSDPATFIQGAVPQILEK-TEEEFFSKITDILRETADICCDRLKEI--PCITC 341
++ + + S+ T +Q V + L+ E F+ + + R D+ L+ +
Sbjct: 247 MRQWTSFSA--PTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY-- 302
Query: 342 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG----ITVGLKDWLRITF 397
PEG+ F+M A +L +E V ++P + KD R F
Sbjct: 303 --VPEGTYFLMA--ELPGW--------DAFRLVEEARVALIPASAFYLEDPPKDLFRFAF 350
Query: 398 AVEPSALEDGLGRMKAFYDRHAKKQ 422
L L R+ + + +
Sbjct: 351 CKTEEELHLALERLGRVVNSPREAE 375
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 1e-52
Identities = 77/393 (19%), Positives = 147/393 (37%), Gaps = 51/393 (12%)
Query: 58 FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLT 116
FP S + + + N Y+ G +A++ + ++ P+ ++ +
Sbjct: 32 FPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVA 91
Query: 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK--------- 167
+G ++ + L PG +++ P + YE + L
Sbjct: 92 VGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSS 151
Query: 168 GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227
W D +E+ T A+++ P NP G VYT Q LQ IA+ K + I+DEVY+
Sbjct: 152 DWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEW 211
Query: 228 LAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282
L + V + P +T+GS K + V GW+LGW + P +++ +
Sbjct: 212 LVYTGHTHVKIATL----PGMWERTITIGSAGKTFSVTGWKLGWSIG--PAHLIKH---L 262
Query: 283 DSIKSFLNISSDPATFIQGAVPQILE------KTEEEFFSKITDILRETADICCDRLKEI 336
+++ + AT +Q A+ + E +F+ + L D L +
Sbjct: 263 QTVQQNSFYTC--ATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV 320
Query: 337 --PCITCPKKPEGSMFVMV---KLNYSLLEGINS---DMEFALKLAKEESVIVLPG---- 384
I P+G F++ L L + + D +F + K + + +P
Sbjct: 321 GLKPI----VPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFC 376
Query: 385 ---ITVGLKDWLRITFAVEPSALEDGLGRMKAF 414
+ +R F + S L+ +A+
Sbjct: 377 DSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAW 409
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 2e-52
Identities = 84/405 (20%), Positives = 160/405 (39%), Gaps = 57/405 (14%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRS--ARFNCYSSTVGILPARRAIADYLNRDLP 105
+ LG G FP + A++A+ + S N Y+ G +A++ ++ +
Sbjct: 40 LNLGQG----FPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVD 95
Query: 106 YKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
++P +V +T+G +A+ + G +++ P F YE + R L
Sbjct: 96 RTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLK 155
Query: 165 PAKG--------WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216
P K W +D + +EAL +E T ++I P NP G V L+ +A KK
Sbjct: 156 PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWN 215
Query: 217 IMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSD 271
++ ++DEVY+H+ F + + P +T+GS K + + GW++GW
Sbjct: 216 VLCVSDEVYEHMVFEPFEHIRICTL----PGMWERTITIGSAGKTFSLTGWKIGWAYG-- 269
Query: 272 PNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEE------EFFSKITDILRET 325
P +L++ + + + AT IQ A+ E + +F+ I+ L
Sbjct: 270 PEALLKN---LQMVHQNCVYTC--ATPIQEAIAVGFETELKRLKSPECYFNSISGELMAK 324
Query: 326 ADICCDRLKEI--PCITCPKKPEGSMFVMV-------KLNYSLLEGINSDMEFALKLAKE 376
D L E+ P+G F++ K++ + D F + K
Sbjct: 325 RDYMASFLAEVGMNPT----VPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKS 380
Query: 377 ESVIVLPG-------ITVGLKDWLRITFAVEPSALEDGLGRMKAF 414
+ +P +D++R F + L+ ++ +
Sbjct: 381 VGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKW 425
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 2e-51
Identities = 79/381 (20%), Positives = 157/381 (41%), Gaps = 46/381 (12%)
Query: 59 PSFRTASVAVDAIVHSVR---SARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL 115
PS + D I V S + Y+S G + R AIA++LN + D++Y+
Sbjct: 45 PSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM 104
Query: 116 TLGCTQAIEVILTVLARPGAN-ILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174
T+G ++ + L + + P FP Y+ + + + +++D D
Sbjct: 105 TMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVP-ADTEHFQIDFD 163
Query: 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK------LGIMVIADEVYDHL 228
A+E + +T ++I +P NP G VY+ + ++K+++ +K I +IADE Y +
Sbjct: 164 ALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREI 223
Query: 229 AFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSDP--NGILQDSGI 281
+ V L S SK +PG R+G+++ D + + +
Sbjct: 224 VYDGIKV-------PFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAV 276
Query: 282 VDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDRLKEIPCI 339
+ ++ + + Q + + T + +E D+ + L I
Sbjct: 277 CGAGRALGYVC--APSLFQKMIVKCQGATGDINAY--------KENRDLLYEGLTRIG-Y 325
Query: 340 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV 399
C KP+G+ ++ VK + F + AKEE V+++ G W+RI++ V
Sbjct: 326 HCF-KPDGAFYMFVKAL------EDDSNAFC-EKAKEEDVLIVAADGFGCPGWVRISYCV 377
Query: 400 EPSALEDGLGRMKAFYDRHAK 420
+ ++ + + Y ++ K
Sbjct: 378 DREMIKHSMPAFEKIYKKYNK 398
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 4e-51
Identities = 89/394 (22%), Positives = 156/394 (39%), Gaps = 38/394 (9%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
K + L G P +T V + I + YS + GI R A A Y
Sbjct: 39 KKRGVRIHHLNIGQPD----LKTPEVFFERIYENKPE--VVYYSHSAGIWELREAFASYY 92
Query: 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH 160
R + P++V +T G ++AI V+A PG IL+ P + Y A A + +++
Sbjct: 93 KRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIP 152
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
+G+ + +E+ +E T +V+ NP NP G VY ++ + E A++ G+ +I
Sbjct: 153 VTRRMEEGFAIP-QNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLI 211
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278
DEVY + F + SI V+ + S+SK++ G R+G L+T +
Sbjct: 212 VDEVYSEIVFRGEFASAL----SIESDKVVVIDSVSKKFSACGARVGCLITRNEE----- 262
Query: 279 SGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC 338
++ P Q +L ++ FF + + RE + +L+E
Sbjct: 263 --LISHAMKLAQGRLAPPLLEQIGSVGLL-NLDDSFFDFVRETYRERVETVLKKLEEHGL 319
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL---- 389
KP G+ ++ +L + EFA + + E+ +V P L
Sbjct: 320 KRFT-KPSGAFYITAEL------PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGL 372
Query: 390 -KDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
K +RI +E L + + +
Sbjct: 373 GKKEIRIACVLEKDLLSRAIDVLMEGLKMFCSSR 406
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 6e-51
Identities = 84/407 (20%), Positives = 156/407 (38%), Gaps = 59/407 (14%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRS-ARFNCYSSTVGILPARRAIADYLNRDLPY 106
+ LG G FP F AV+A H+V N Y+ T G P + +A + L
Sbjct: 31 VNLGQG----FPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQ 86
Query: 107 KLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
++ P +V +T+G A+ L G +++ P F YE + L P
Sbjct: 87 EIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKP 146
Query: 166 AK----------GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215
W++D + T ALV+ P NP G V++ + L+ +A ++
Sbjct: 147 GPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH 206
Query: 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTS 270
++ I DEVY + + + + P LT+GS K + GW++GW++
Sbjct: 207 DVVCITDEVYQWMVYDGHQHISIASL----PGMWERTLTIGSAGKTFSATGWKVGWVLG- 261
Query: 271 DPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE------EEFFSKITDILRE 324
P+ I++ + ++ T Q AV + E+ + +F + ++
Sbjct: 262 -PDHIMKH---LRTVHQNSVFHC--PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQR 315
Query: 325 TADICCDRLKEI--PCITCPKKPEGSMFVMV-----KLNYSLLEGINS---DMEFALKLA 374
D L+ + I P+GS F++ K L G D F +
Sbjct: 316 CRDHMIRSLQSVGLKPI----IPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMI 371
Query: 375 KEESVIVLPG-------ITVGLKDWLRITFAVEPSALEDGLGRMKAF 414
K + ++ +P ++R F + + L+ +++ +
Sbjct: 372 KNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 418
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 4e-50
Identities = 81/426 (19%), Positives = 153/426 (35%), Gaps = 50/426 (11%)
Query: 23 ASGITVRGVLNSLLENLNKNDTRP-LIPLGHG--DPSAFPSFRTASVAVDAIVHSVRSAR 79
SGIT L+E+LN P I LG G ++ D + +
Sbjct: 14 HSGIT------RLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADA 67
Query: 80 FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN--- 136
Y G A+A L L + + P ++ LT G A + + A A+
Sbjct: 68 LCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGST 127
Query: 137 ILLPRPGFPYYEARATHSHLEVRHF-------DLLPAKGWEVDLDAVEALADENTVALVI 189
+ P P Y S LE F +LLP ++ +D E T + +
Sbjct: 128 KKVLFPLAPEYIG-YADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICV 186
Query: 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249
P NP GNV T + L K+ A + I ++ D Y F F + ++
Sbjct: 187 SRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWN-PNIIL 244
Query: 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEK 309
S+SK +PG R G ++ +D + + ++ ++++ P + +++++
Sbjct: 245 CMSLSK-LGLPGSRCGIIIANDK--TITA---IANMNGIISLA--PGGMGPAMMCEMIKR 296
Query: 310 TEEEFFSK--ITDILRETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSLLEGIN 364
+ S+ I + ++ KPEG++F+ + +
Sbjct: 297 NDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIH-KPEGAIFLWLWFK----DLPI 351
Query: 365 SDMEFALKLAKEESVIVLPG---------ITVGLKDWLRITFAVEPSALEDGLGRMKAFY 415
+ + K V+++PG +R+ + EP +E G+ +
Sbjct: 352 TTELLY-QRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410
Query: 416 DRHAKK 421
+R ++
Sbjct: 411 ERAWRE 416
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 8e-48
Identities = 67/389 (17%), Positives = 124/389 (31%), Gaps = 43/389 (11%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRD--LP 105
+ HGD T Y+ G L R +A L P
Sbjct: 42 VDFSHGDVD-AHE-PTPGAFDLFSAGVQS-GGVQAYTEYRGDLGIRDLLAPRLAAFTGAP 98
Query: 106 YKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE-----ARATHSHLEVRH 160
+ D + +T G A+ + + G + + +P + +++ +
Sbjct: 99 VD-ARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDY 157
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
+DL +E + NP NP G VY+ + + +IA A + G VI
Sbjct: 158 VSA-DETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVI 216
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSDPNGI 275
AD++Y L + + + V+T+ SK + G+RLG
Sbjct: 217 ADQLYSRLRYAGASYTH---LRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF------- 266
Query: 276 LQDSGIVDSIKSFLNI----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331
G I + S A + Q + ++ + + D
Sbjct: 267 ----GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLH 321
Query: 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-- 389
L+ + P+ ++ L + + EF L + V+V PG
Sbjct: 322 VLRGCEGVFAR-TPQAGSYLFP----RLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHT 376
Query: 390 KDWLRITFAVEPSALEDGLGRMKAFYDRH 418
D +R+ F+ + A R+ +R+
Sbjct: 377 ADSVRLNFSQDHEAAVAAARRIVTLVERY 405
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 166 bits (424), Expect = 1e-47
Identities = 83/385 (21%), Positives = 154/385 (40%), Gaps = 32/385 (8%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
+I L G+P T V+ + + + YS++ GI RRAI+ +
Sbjct: 37 EDIIDLSMGNPD----GPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRY 92
Query: 105 PYKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163
++ P+ +T+G + + ++ G IL+P P +P + A + +VR L
Sbjct: 93 DVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPL 152
Query: 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223
+P + +L+ + +++ P NP +++ AK+ +MV+ D
Sbjct: 153 VPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDL 212
Query: 224 VYDHLAFGNTPFVPMGVFGSI--VP-----VLTLGSISKRWIVPGWRLGWLVTSDPNGIL 276
Y + + SI VP + ++SK + + GWR+G++V +P +
Sbjct: 213 AYADIVYDGWKAP------SIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV-GNPELV- 264
Query: 277 QDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI 336
+ IKS T +Q A L + +++ I ++ D+ L+E
Sbjct: 265 ---SALARIKS--YHDYGTFTPLQVAAIAAL-EGDQQCVRDIARQYQQRRDVLVKGLREA 318
Query: 337 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLR 394
P+ SM+V K+ + S +EFA KL ++ V V PGI G D +R
Sbjct: 319 GW-MVE-NPKASMYVWAKIP-EPYAHLGS-LEFAKKLLQDAKVSVSPGIGFGDYGDDHVR 374
Query: 395 ITFAVEPSALEDGLGRMKAFYDRHA 419
L + +KA +
Sbjct: 375 FALIENRDRLRQAVRGIKAMFRADG 399
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 7e-47
Identities = 81/446 (18%), Positives = 162/446 (36%), Gaps = 71/446 (15%)
Query: 23 ASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFP----SFRTASVAVDAIVHSVRSA 78
+GI +++ L + L + P+ LG G+P+ F A+ + ++
Sbjct: 14 PTGI--SQLMDDLGDALKSDQ--PVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKAN 69
Query: 79 RFNC-----YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP 133
YS+ G A+ + NR + L+ +++ LT G A + +
Sbjct: 70 SSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGA 129
Query: 134 GAN---------------ILLPRPGFPYYEARATHS---------HLEVRHFDLLPAKGW 169
N +L P + Y EV H +
Sbjct: 130 FVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKY 189
Query: 170 EVDLDAVEALA---DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
VD +A+E L + A+ P NP GNV T + + +AE AK+ I +I D Y
Sbjct: 190 RVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYG 249
Query: 227 HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286
+ + + S+SK +PG R G +V +++ V ++
Sbjct: 250 MPFPNIIYSDAHLNWDN--NTILCFSLSK-IGLPGMRTGIIVA--DAKVIEA---VSAMN 301
Query: 287 SFLNISSDPATFIQGAVPQILEK--TEEEFFSKITDILRETADICCDRLKEIPC---ITC 341
+ +N++ P F ++ ++ ++I ++ A + LK+ +
Sbjct: 302 AVVNLA--PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMI 359
Query: 342 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG----ITVGLKDW----- 392
KPEG++F+ + + S ++ + K + +++P V + D+
Sbjct: 360 H-KPEGAIFLWLWFK----DLPISTLDLY-ERLKAKGTLIVPSEYFFPGVDVSDYQHAHE 413
Query: 393 -LRITFAVEPSALEDGLGRMKAFYDR 417
+R++ A + L DG+ +
Sbjct: 414 CIRMSIAADEQTLIDGIKVIGEVVRE 439
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-46
Identities = 81/375 (21%), Positives = 140/375 (37%), Gaps = 26/375 (6%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
LI L G + A+ ++ Y LP A +
Sbjct: 25 VGLIDLSIGSTD----LPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRY 80
Query: 105 PYKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163
L P +G + + +L L P +LLP +P Y A + L L
Sbjct: 81 GVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL 140
Query: 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223
DL AV L++ P NP G V + + ++ A+K G+ +I D
Sbjct: 141 RE--DGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDN 198
Query: 224 VYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283
Y + P+ + G+ V+ L S+SK + + G+RLG+ + + ++
Sbjct: 199 PYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFAL-GSEEAL----ARLE 253
Query: 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343
+K I + + + L KT +E + RE A + LK + ++
Sbjct: 254 RVKG--VIDFNQYAGVLRMGVEAL-KTPKEVVRGYARVYRERALGMAEALKGV--LSLL- 307
Query: 344 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEP 401
P +M++ +L EG++ +EF L+L E V + PG G K ++RI
Sbjct: 308 PPRATMYLWGRLP----EGVDD-LEFGLRLV-ERGVALAPGRGFGPGGKGFVRIALVRPL 361
Query: 402 SALEDGLGRMKAFYD 416
L + R++ D
Sbjct: 362 EELLEAAKRIREALD 376
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 1e-45
Identities = 82/379 (21%), Positives = 163/379 (43%), Gaps = 35/379 (9%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
+++ + +I L G+P F T VD + S++ Y+ + GIL R I++
Sbjct: 25 ESEGKKVIHLEIGEPD----FNTPKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELY 79
Query: 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH 160
+ PD++ +T G + + L+ + G +L+ P +P Y+ +
Sbjct: 80 KDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVF 139
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
D +++E + T A++I +P NP G V ++I E A + +I
Sbjct: 140 CDFTV--------ESLEEALSDKTKAIIINSPSNPLGEVID----REIYEFAYENIPYII 187
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280
+DE+Y+ L + + + ++ + + SK + + GWR+G++++ + I++
Sbjct: 188 SDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVIS--NDEIIEAIL 245
Query: 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340
+ N+ T Q A + EK E + + + +K+
Sbjct: 246 KLQQ-----NLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFG-WE 299
Query: 341 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA 398
P G+ +V + EFA KL KE+ V + PGI G K+++RI++A
Sbjct: 300 VN-NPIGAYYVFPNIG-------EDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA 351
Query: 399 VEPSALEDGLGRMKAFYDR 417
+++GL R+K F ++
Sbjct: 352 NSYENIKEGLERIKEFLNK 370
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 4e-45
Identities = 72/377 (19%), Positives = 147/377 (38%), Gaps = 23/377 (6%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
PLI + G P T +D ++ Y + G ++AI D+ R
Sbjct: 47 LPLINMAVGIPD----GPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQY 102
Query: 105 PYKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163
L +D V + G + + T + PG +LLP PG+ Y A + + +L
Sbjct: 103 NVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNL 162
Query: 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223
P + D V++ + T + + P NP G+ T + + K ++ D
Sbjct: 163 EP-PHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDF 221
Query: 224 VYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283
Y F + + + S+SK + + G+R+G+ V + + I +
Sbjct: 222 AYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAV-GNKDMI----QALK 276
Query: 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343
++ + ++ +Q A L ++F + +++ + D L +
Sbjct: 277 KYQT--HTNAGMFGALQDAAIYAL-NHYDDFLEEQSNVFKTRRDRFEAMLAKADL-PFV- 331
Query: 344 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEP 401
+G ++V ++ G +S +F L +E+S++V PG G ++RI+ A++
Sbjct: 332 HAKGGIYVWLETP----PGYDS-EQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDD 386
Query: 402 SALEDGLGRMKAFYDRH 418
L++ R+ +
Sbjct: 387 QKLDEAAIRLTELAYLY 403
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-44
Identities = 78/404 (19%), Positives = 139/404 (34%), Gaps = 55/404 (13%)
Query: 32 LNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91
L +LL+ + + + LG G+P F T DA+ + N Y +
Sbjct: 12 LRALLKEITPK--KRGLDLGIGEPQ----FETPKFIQDALKNHT--HSLNIYPKSAFEES 63
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA--RPGANILLPRPGFPYYEA 149
R A + R +L +++ TLG + + + + I P P + YE
Sbjct: 64 LRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG 123
Query: 150 RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN-PGNPCGNVYTYQHLQKI 208
A + L + L+ + V LVI+N P NP G + + L
Sbjct: 124 AAKFIKAKSLLMPLTKENDFTPSLNE----KELQEVDLVILNSPNNPTGRTLSLEELISW 179
Query: 209 AETAKKLGIMVIADEVYDHLAFGNTP-----FVPMGVFGSIVPVLTLGSISKRWIVPGWR 263
+ A K ++I DE Y + P + + VL + S+SKR PG R
Sbjct: 180 VKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLR 239
Query: 264 LGWLVTSDPNGILQDSGIVDSIKSFLNISS--DPATF--IQGAVPQILEKTEEEFFSKIT 319
G++ D ++ + + + IQ A ++
Sbjct: 240 SGFIA-GDS----------RLLEKYKAFRAYLGYTSANAIQKASEAAW--LDDRHAEFFR 286
Query: 320 DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 379
+I + K S +V + + + FA L + E +
Sbjct: 287 NIYANNLKLARKIFKNTL------IYPYSFYVYLP--------VQNGENFAKTLYQNEGI 332
Query: 380 IVLPGITVGL----KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
I LP + +G D++R+ + LE L ++ + + HA
Sbjct: 333 ITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRENHA 376
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-44
Identities = 86/382 (22%), Positives = 166/382 (43%), Gaps = 35/382 (9%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRD--LP 105
I LG G+P F T + ++ Y +G+L R AIA+ L + +
Sbjct: 29 ISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQNGIE 83
Query: 106 YKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
P + + LG QA + L+ + G +L+P P F Y + +
Sbjct: 84 AD--PKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTY 141
Query: 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224
+ +++D ++ + T AL+I +P NP G V T + L++IA+ + ++VI+DEV
Sbjct: 142 EEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEV 201
Query: 225 YDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283
Y+H + + + + +T+ SK + + GWRLG++ P+ I
Sbjct: 202 YEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA--PSWI-------- 251
Query: 284 SIKSFLNI----SSDPATFIQ-GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC 338
I+ + ++ P TFIQ A + ++ + ++ + RL E+
Sbjct: 252 -IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG- 309
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRIT 396
+ KP+G+ ++ ++ + + +F+ + KE V V+PG G + ++RI+
Sbjct: 310 LPTV-KPKGAFYIFPRIR----DTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS 364
Query: 397 FAVEPSALEDGLGRMKAFYDRH 418
+A LE+ + RM+
Sbjct: 365 YATAYEKLEEAMDRMERVLKER 386
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-43
Identities = 86/387 (22%), Positives = 160/387 (41%), Gaps = 50/387 (12%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
+ G+P F T V+A ++ Y G R AIA L RD
Sbjct: 30 IDVCSFSAGEPD----FNTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDN 84
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGF-PYYEARATHSHLEVRHFDL 163
D++ +T G Q+I ++ + PG +++P P + Y E V+ +
Sbjct: 85 GLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEM--------VKLAEG 136
Query: 164 LP-------AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216
P ++V + + T LV P NP G VYT ++ IA+ A + G
Sbjct: 137 TPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAG 196
Query: 217 IMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVTSD 271
+ V++DE+Y+ + + + + + G+ P + +K + + GWR+G+L
Sbjct: 197 LWVLSDEIYEKILYDDAQHLSI---GAASPEAYERSVVCSGFAKTYAMTGWRVGFLA--- 250
Query: 272 PNGILQDSGIVDSIKSFLNI----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327
G V +K+ I +S+ TF Q E ++ ++ E
Sbjct: 251 --------GPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYE-NSQDCVQEMLAAFAERRR 301
Query: 328 ICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 387
D L +P + CP KP+G+ ++ + + S ++F +L + V +PG
Sbjct: 302 YMLDALNAMPGLECP-KPDGAFYMFPSIA----KTGRSSLDFCSELLDQHQVATVPGAAF 356
Query: 388 GLKDWLRITFAVEPSALEDGLGRMKAF 414
G D +R+++A + ++ G+ R++ F
Sbjct: 357 GADDCIRLSYATDLDTIKRGMERLEKF 383
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 1e-41
Identities = 90/405 (22%), Positives = 165/405 (40%), Gaps = 53/405 (13%)
Query: 28 VRGVLNSLLENLNKNDTRP-LIPLGHG--DPSAFPSFRTASVAVDAIVHSVRSARFNCYS 84
+ S + L K RP ++ G P FP A A + A YS
Sbjct: 14 AGRIQASTIRELLKLTQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVA-LQ-YS 71
Query: 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGF 144
T G P R +A+++ + P++V +T G QA++++ V G+ +LL P +
Sbjct: 72 PTEGYAPLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSY 125
Query: 145 PY-------YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP--GNP 195
R +G DLDA+E + + + P NP
Sbjct: 126 MGAIQAFRLQGPRFLTVPAG--------EEG--PDLDALEEVLKRERPRFLYLIPSFQNP 175
Query: 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF---GSIVPVLTLGS 252
G + +++ + + G++V+ D+ Y L FG + V+ LGS
Sbjct: 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGS 235
Query: 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEE 312
SK + PG R+ + V LQ + K ++ + Q V ++L++
Sbjct: 236 FSK-VLSPGLRVAFAVAHPE--ALQK---LVQAKQGADLHT--PMLNQMLVHELLKEGFS 287
Query: 313 EFFSKITDILRETADICCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371
E ++ + RE A L +E+P +P+G MFV ++L +G+++
Sbjct: 288 ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELP----KGLSA-EGL-F 341
Query: 372 KLAKEESVIVLPG----ITVGLKDWLRITFA-VEPSALEDGLGRM 411
+ A EE+V +PG G ++ LR+++A ++ + +G+ R+
Sbjct: 342 RRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 9e-41
Identities = 90/379 (23%), Positives = 158/379 (41%), Gaps = 35/379 (9%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
+I L G+P F T V+ V ++ Y+ GI R IA +
Sbjct: 37 IKKGEDVINLTAGEPD----FPTPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRI 91
Query: 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH 160
+SPD V +T G QA+ L PG +++ P + Y + + V
Sbjct: 92 GERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNV 151
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
+ +K ++ L+ VE L T A++I +P NP G VY + L+ + AKK +I
Sbjct: 152 VETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYII 211
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279
+DEVYD L + + F + ++ + SK + GWR+G+L+
Sbjct: 212 SDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLI----------- 259
Query: 280 GIVDSIKSFLNI----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335
+ I +S T Q A + LE + +E + +RLK+
Sbjct: 260 SSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSY----MVQTFKERKNFVVERLKK 315
Query: 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI 395
+ + +PEG+ ++ K+ D++F +L +E+ V ++PG ++R+
Sbjct: 316 MG-VKFV-EPEGAFYLFFKVR-------GDDVKFCERLLEEKKVALVPGSAFLKPGFVRL 366
Query: 396 TFAVEPSALEDGLGRMKAF 414
+FA L + L R++ F
Sbjct: 367 SFATSIERLTEALDRIEDF 385
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-39
Identities = 86/378 (22%), Positives = 159/378 (42%), Gaps = 35/378 (9%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
L+ L G+P F T +A ++ Y+ GI R A+A+ R+
Sbjct: 31 VDLVALTAGEPD----FDTPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFRREN 85
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
++P++ +T+G +QA+ + + PG +++ P + Y + V + L
Sbjct: 86 GLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETL 145
Query: 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224
P +G+ D + V T ALV+ +P NP G VY + L+ +A A + +++DE+
Sbjct: 146 PEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEI 205
Query: 225 YDHLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282
Y+HL + F P G + P LT+ +K + + GWR+G+ G
Sbjct: 206 YEHLLYEGEHFSP----GRVAPEHTLTVNGAAKAFAMTGWRIGYAC-----------GPK 250
Query: 283 DSIKSFLNI----SSDPATFIQGAVPQILEKTEE--EFFSKITDILRETADICCDRLKEI 336
+ IK+ ++ ++ P T Q A + L E F + R D+ + L +
Sbjct: 251 EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL 310
Query: 337 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT 396
+ +P G+ +V++ + ++ A +L E V V+PG +R++
Sbjct: 311 G-LKAV-RPSGAFYVLMDTS----PIAPDEVRAAERL-LEAGVAVVPGTDFAAFGHVRLS 363
Query: 397 FAVEPSALEDGLGRMKAF 414
+A L L R
Sbjct: 364 YATSEENLRKALERFARV 381
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 3e-39
Identities = 44/403 (10%), Positives = 118/403 (29%), Gaps = 64/403 (15%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA----RRAIADYLNRD 103
+ GD + A++ V Y + I +
Sbjct: 59 ADVASGDGLFLEEYWKQHKEASAVL--VSPWHRMSYFFNPVSNFISFELEKTIKELHEVV 116
Query: 104 LPYKLSPDDVYLTLGCTQAIEVILTVLA--------RPGANILLPRPGFPYYEARATHSH 155
+ +G TQ I ++ L+ P + ++ P +P +
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE------ 170
Query: 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215
+ ++FD W + +++ ++ +P NP G +
Sbjct: 171 -QTKYFDK-KGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------------- 214
Query: 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275
++ +YD + + + P + + L ++SK G R GW + D +
Sbjct: 215 AVIKGCKSIYDMVYYWPH-YTP--IKYKADEDILLFTMSKFTGHSGSRFGWALIKDES-- 269
Query: 276 LQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEE----------EFFSKITDILRE 324
+ +++ +++ + Q ++L++ + + LRE
Sbjct: 270 -----VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE 324
Query: 325 TADICCDRLKEIPCITCPKKPEGSMFVMVKLN------YSLLEGINSDMEFALKLAKEES 378
L + + + P+ + Y+ ++ + + + +
Sbjct: 325 RWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGR 384
Query: 379 VIVLPGITVGL-KDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420
+ G+ ++R++ + + +K K
Sbjct: 385 INTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKRK 427
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 86/425 (20%), Positives = 160/425 (37%), Gaps = 57/425 (13%)
Query: 28 VRGVLNSLLENLNKNDTRP-LIPLGHG--DPSAFPSFRTASVAVDAIVHSVRSARFNCYS 84
+ + +S++ + K I G G DP FP A +A + I YS
Sbjct: 25 GQNMKSSIIREILKFAADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYT-LQ-YS 82
Query: 85 STVGILPARRAIADYLNRDL-PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPG 143
+T G ++ I L R L D++ T+G QA+++I + + +L P
Sbjct: 83 TTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPA 142
Query: 144 FPY-------YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP---- 192
+ Y A LE G +DL+ +E E I
Sbjct: 143 YLGAINAFRQYLANFVVVPLE--------DDG--MDLNVLERKLSEFDKNGKIKQVKFIY 192
Query: 193 -----GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV 247
NP G + + + + E A+K + ++ D+ Y L + P+ G V
Sbjct: 193 VVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERV 252
Query: 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQIL 307
+ L + SK + PG R+G + S ++ + K ++ S + L
Sbjct: 253 VLLNTFSK-VLAPGLRIGMVAGSKE--FIRK---IVQAKQSADLCSP--AITHRLAARYL 304
Query: 308 EKTE-EEFFSKITDILRETADICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEG 362
E+ + E ++ R + + L+E IP + K EG +F+ + L EG
Sbjct: 305 ERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW-VKSEGGLFIWLTLP----EG 359
Query: 363 INSDMEFALKLAKEESVIVLPG----ITVGLKDWLRITFA-VEPSALEDGLGRMKAFYDR 417
++ E + AK + V +PG + +R++F + +G+ R++
Sbjct: 360 FDT-WEM-FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE 417
Query: 418 HAKKQ 422
+ K++
Sbjct: 418 YGKEK 422
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-38
Identities = 86/389 (22%), Positives = 159/389 (40%), Gaps = 51/389 (13%)
Query: 47 LIPLGHG--DPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
LI L G DP P +A + + +S Y+ GI R +A +L +
Sbjct: 36 LISLAAGDPDPELIPRAVLGEIAKEVLEKEPKS--VM-YTPANGIPELREELAAFLKKYD 92
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPY-------YEARATHSHLE 157
++SP+++ +T+G T A++++ VL PG ++ P + A+ ++
Sbjct: 93 HLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVD 152
Query: 158 VRHFDLLPAKGWEVDLDAVEAL-----ADENTVALVIINP--GNPCGNVYTYQHLQKIAE 210
G + +D +E A V L+ P NP G + + + + E
Sbjct: 153 --------NDG--MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLE 202
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270
A K +++I D Y+ + + VP+ + V+ G++SK + G+R+GW++
Sbjct: 203 IASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKV-LGTGFRIGWIIAE 261
Query: 271 DPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKT--EEEFFSKITDILRETADI 328
IL+ V K ++ + Q + L++ E+ +E DI
Sbjct: 262 GE--ILKK---VLMQKQPIDFCA--PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDI 314
Query: 329 CCDRL-KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG--- 384
L +P KP MFVM L EG + + FA +L + E V+V+PG
Sbjct: 315 MLKALENHLPNAEF-TKPIAGMFVMFFLP----EGADG-ISFANELMEREGVVVVPGKPF 368
Query: 385 -ITVGLKDWLRITFA-VEPSALEDGLGRM 411
K+ +R+ F+ + G+ ++
Sbjct: 369 YTDESGKNAIRLNFSRPSKEEIPIGIKKL 397
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 77/469 (16%), Positives = 141/469 (30%), Gaps = 90/469 (19%)
Query: 24 SGITVRGVLNSLLENLNKNDTRPL---IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF 80
GI R + EN ++ R L + A+ + + +
Sbjct: 81 DGIEGR-FERYIAENRDQEGVRFLGKSLSYVRDQLG----LDPAAFLHEMVDGILG---- 131
Query: 81 NCYSSTVGILPARRAIA-DYLNRDLPYKLSPD---DVYLTLGCTQAIEVILTVLAR---- 132
Y +L I Y+ R++ P +++ G T A+ I L
Sbjct: 132 CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLL 191
Query: 133 -PGANILLPRPGF-PYYE----ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186
G + + P F PY E A+ + + P+ W+ ++ L D
Sbjct: 192 KAGDKVAIGMPVFTPYIEIPELAQYALEEVAIN---ADPSLNWQYPDSELDKLKDPAIKI 248
Query: 187 LVIINPGNPCGNVYTYQHLQKIAETAKK--LGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244
+NP NP + L+++ + +M++ D+VY A +I
Sbjct: 249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLF------AI 302
Query: 245 VP--VLTLGSISKRWIVPGWRLGWLVTSDPNGI------LQDSGIVDSIKSFLNISSDPA 296
P L + S SK + GWRLG + N LQ+S V + ++ D
Sbjct: 303 CPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVR 362
Query: 297 --TFIQGAVP-------------------QILEKTEEEFFSKITDILRETADICCDR--- 332
FI V Q+ + + + + R
Sbjct: 363 SLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETT 422
Query: 333 ---LKEIPCITCPKKPEGSMFVMVKLNYSL-----------LEGINSDMEFALKLAKEES 378
+P + + ++ L +S + ++A E
Sbjct: 423 LYRELGMPPLRDE--NAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETG 480
Query: 379 VIVLPGITVGLKDW-LRITFAVEP----SALEDGLGRMKAFYDRHAKKQ 422
+++LPG G R + A +A+ L +M Q
Sbjct: 481 IVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADELYAEYSGQ 529
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 4e-38
Identities = 91/432 (21%), Positives = 171/432 (39%), Gaps = 53/432 (12%)
Query: 4 GGGANGNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRP-LIPLGHG--DPSAFPS 60
G G N + E + + S + L K +I L G +P FP
Sbjct: 36 GIGMEENIKSMLGDVERFFSKK--ALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPK 93
Query: 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120
+ V+ + A Y +T G P R + +L + +D+ +T G
Sbjct: 94 EIIRDILVEIMEKYADKA-LQ-YGTTKGFTPLRETLMKWLGKRYG-ISQDNDIMITSGSQ 150
Query: 121 QAIEVILTVLARPGANILLPRPGFPY-------YEARATHSHLEVRHFDLLPAKGWEVDL 173
QA+++I V PG +++ P + YE + L+ +G + +
Sbjct: 151 QALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLD--------DEG--MKV 200
Query: 174 DAVEAL-----ADENTVALVIINP--GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
+ +E + V +V P NP G + + E A + +V+ D+ Y
Sbjct: 201 EILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYG 260
Query: 227 HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286
L + P + + V+ LG+ SK + PG+R+GW+V I++ ++ K
Sbjct: 261 ELRYSGNPEKKIKALDNEGRVIYLGTFSK-ILAPGFRIGWMVGDPG--IIRK---MEIAK 314
Query: 287 SFLNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRL-KEIPCITCPKK 344
++ + F Q + ++ E+ +I + D + L + +P K
Sbjct: 315 QSTDLCT--NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK 372
Query: 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG----ITVGLKDWLRITFA-V 399
PEG MF+ V L +GI+S + L+ A ++ V +PG +K+ +R+ F V
Sbjct: 373 PEGGMFIWVTLP----DGIDS-KKM-LERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYV 426
Query: 400 EPSALEDGLGRM 411
+ + +G+ R+
Sbjct: 427 DEDKIMEGIKRL 438
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 4e-38
Identities = 67/397 (16%), Positives = 130/397 (32%), Gaps = 59/397 (14%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVR----SARFNCYSSTVGILPARRAI 96
+N +I L GD + P + +A S+ Y G+ R+ +
Sbjct: 29 ENPQHTVINLSIGDTT-QP---LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKL 84
Query: 97 ADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE-----ARA 151
++ R + +++++ G + +L+ P + + P +P Y A
Sbjct: 85 SEDFYRGF---VDAKEIFISDGAKVDLFRLLSFFG-PNQTVAIQDPSYPAYLDIARLTGA 140
Query: 152 THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN-PGNPCGNVYTYQHLQKIAE 210
E+ L + + + ++ + P NP G V L+ I
Sbjct: 141 K----EIIALPCLQENAFFPEFPEDTH------IDILCLCSPNNPTGTVLNKDQLRAIVH 190
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI--VP-----VLTLGSISKRWIVPGWR 263
A + I+++ D Y P +P SI +P + + S SK G R
Sbjct: 191 YAIEHEILILFDAAYSTFISD--PSLPK----SIFEIPDARFCAIEINSFSKPLGFAGIR 244
Query: 264 LGWLVTSDPNGILQDSGIVDSIKSFL----NISSDPATFIQGAVPQILEKTEEEFFSKIT 319
LGW V L + I+ + + + Q A L + +
Sbjct: 245 LGWTVI---PQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQL---EAI 298
Query: 320 DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 379
RE +D+ L E + ++ VK + SD + +E +
Sbjct: 299 HYYRENSDLLRKALLATGF-EVF-GGEHAPYLWVKPT----QANISDRDLFDFFLREYHI 352
Query: 380 IVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAF 414
+ PGI G ++R + + + R++
Sbjct: 353 AITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMA 389
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 5e-38
Identities = 78/414 (18%), Positives = 134/414 (32%), Gaps = 65/414 (15%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVR----SARFNCYSSTVGILPARRAI 96
K +I LG GD + P V A+ ++ Y + G P R AI
Sbjct: 52 KYPDAQVISLGIGDTT-EP---IPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAI 107
Query: 97 ADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYY--------- 147
A + DDV+++ G I + + I + P +P Y
Sbjct: 108 AKTFYGG--LGIGDDDVFVSDGAKCDISRLQVMFG-SNVTIAVQDPSYPAYVDSSVIMGQ 164
Query: 148 ---EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN-PGNPCGNVYTYQ 203
+ + + P G+ DL V ++ P NP G T +
Sbjct: 165 TGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG------RTDIIFFCSPNNPTGAAATRE 218
Query: 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI--VP-----VLTLGSISKR 256
L ++ E AKK G +++ D Y + P SI +P + S S
Sbjct: 219 QLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP-------RSIFEIPGAEEVAMETASFSNY 271
Query: 257 WIVPGWRLGW------LVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKT 310
G RLGW L+ SD + +D + I + + Q L
Sbjct: 272 AGFTGVRLGWTVIPKKLLYSDGFPVAKD---FNRIIC--TCFNGASNISQAGALACLTPE 326
Query: 311 EEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFA 370
E K+ +E +I D + + + +V V +S +
Sbjct: 327 GLEAMHKVIGFYKENTNIIIDTFTSLGY-DVY-GGKNAPYVWVH-----FPNQSS-WDVF 378
Query: 371 LKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
++ ++ V+ PG G + ++R++ + + R K Y H
Sbjct: 379 AEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYKHHHHHH 432
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 8e-38
Identities = 83/409 (20%), Positives = 162/409 (39%), Gaps = 55/409 (13%)
Query: 32 LNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91
L+ ++ ++ + +PL G+P T V DA+ S+ Y T G+
Sbjct: 17 LHEAMQGISAPEGMEAVPLHIGEPK----HPTPKVITDALTASL--HELEKYPLTAGLPE 70
Query: 92 ARRAIADYLNR--DLPYKLSPDD-VYLTLGCTQAIEVILTVLARPGAN-----ILLPRPG 143
R+A A++L R D + D+ + LG +A+ + + P ++ I+ P P
Sbjct: 71 LRQACANWLKRRYDGL-TVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPF 129
Query: 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203
+ YE E+ HF PA + D ++ + T + + +P NP G+V
Sbjct: 130 YQIYEGATLLGGGEI-HFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLD 188
Query: 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTP-----FVPMGVFGSIVPVLTLGSISKRWI 258
+++ + K G ++ +DE Y + F + S +L S+SKR
Sbjct: 189 GWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSN 248
Query: 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS--DPATF--IQGAVPQILEKTEEEF 314
VPG R G++ D + +K+FL + A +Q A +E+
Sbjct: 249 VPGLRSGFVA-GDA----------ELLKNFLLYRTYHGSAMSIPVQRASIAAW--DDEQH 295
Query: 315 FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 374
+ +E + L+++ + K P+ S ++ +K+ D+ FA L
Sbjct: 296 VIDNRRLYQEKFERVIPILQQVFDV---KLPDASFYIWLKV------PDGDDLAFARNLW 346
Query: 375 KEESVIVLPGITVGL--------KDWLRITFAVEPSALEDGLGRMKAFY 415
++ ++ VLPG + + ++RI + + + + Y
Sbjct: 347 QKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-37
Identities = 77/440 (17%), Positives = 142/440 (32%), Gaps = 83/440 (18%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI-ADYLNRDLPY 106
+ H + V + + +V N Y L I +L
Sbjct: 106 VNYCHTELG----LNRDKVVAEWVNGAVA----NNYPVPDRCLVNTEKIINYFLQELSYK 157
Query: 107 KLSPD---DVYLTLGCTQAIEVILTVLAR-----PGANILLPRPGF-PYYE----ARATH 153
+ D++ T G T AI LA G I + P F PY
Sbjct: 158 DANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYEL 217
Query: 154 SHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAK 213
+++ + WE++ + +E L D + AL+++NP NP + L I + +
Sbjct: 218 VEVDLHSY---EKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVE 274
Query: 214 K-LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWL--- 267
K +M+I+DEVY S+VP + + S SK + GWRLG +
Sbjct: 275 KNPKLMIISDEVYGAFVPNFKSIY------SVVPYNTMLVYSYSKLFGCTGWRLGVIALN 328
Query: 268 --------------------------VTSDPNGILQDSGIV-DSIKSFLNISSDPATFIQ 300
V DP+ + + DS L ++ +T Q
Sbjct: 329 EKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQ 388
Query: 301 GAVPQ--ILEKTEEEFFSKITDILRETADICCDRL----KEIPCITCPKKPEGSMFVMVK 354
+ + + +R + + ++
Sbjct: 389 IMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQAPKDETDTNTHYYSLID 448
Query: 355 LNYSL-----------LEGINSDMEFALKLAKEESVIVLPGITVGLKDW-LRITFAVEPS 402
+ L ++F LKLA++ V+++ G+ G K LR++ A P+
Sbjct: 449 IYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPT 508
Query: 403 ALEDGLGR-MKAFYDRHAKK 421
+G+ + + ++
Sbjct: 509 EDYALIGKQVLELLKEYYEE 528
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 68/406 (16%), Positives = 133/406 (32%), Gaps = 58/406 (14%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR----FNCYSSTVGILPARRAI 96
KN +I LG GD + P DA+ + ++ Y + G R A+
Sbjct: 65 KNPDAKIISLGIGDTT-EP---LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAV 120
Query: 97 ADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE-----ARA 151
A + D+++++ G I I + + + P +P Y
Sbjct: 121 ASTFYGH--AGRAADEIFISDGSKCDIARIQMMFG-SKPTVAVQDPSYPVYVDTSVMMGM 177
Query: 152 THSHLE-----VRHFDLLPAKGWEVDLDAVEALADENTVALVIIN-PGNPCGNVYTYQHL 205
T H + + P + DL + ++ P NP G T L
Sbjct: 178 TGDHNGTGFDGIEYMVCNPDNHFFPDLSKAK------RTDIIFFCSPNNPTGAAATRAQL 231
Query: 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI--VP-----VLTLGSISKRWI 258
++ A+K G +++ D Y P P +I +P + S SK
Sbjct: 232 TELVNFARKNGSILVYDAAYALYISN--PDCPK----TIYEIPGADEVAIETCSFSKYAG 285
Query: 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFL----NISSDPATFIQGAVPQILEKTEEEF 314
G RLGW V L+ + + + + +Q L+ +
Sbjct: 286 FTGVRLGWTVV---PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKE 342
Query: 315 FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 374
+ + +E A I E+ + + + ++ V G S + ++
Sbjct: 343 MNAMIKFYKENAQILKTTFTEMGF-SVY-GGDDAPYIWVG-----FPGKPS-WDVFAEIL 394
Query: 375 KEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418
+ +++ PG G + ++R + + + + R K Y +
Sbjct: 395 ERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKR 440
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 59/391 (15%), Positives = 119/391 (30%), Gaps = 56/391 (14%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHS--VRSARFNCYSSTVGILPA--RRAIADYLNRD 103
+ L HGDP+A+ + + + F+ ++ L AI D
Sbjct: 25 VNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVV 84
Query: 104 LPYKLSPDDVYLTLGCTQAIEVILTVLARPGA----NILLPRPGFPYYEARATHSHLEVR 159
+ + G TQ + + L+ +++ P + Y
Sbjct: 85 GNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEET-------- 136
Query: 160 HFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMV 219
+ + ++ + DA + ++ +P NP G + + + V
Sbjct: 137 --TYVRSGMYKWEGDA-WGFDKKGPYIELVTSPNNPDGTI-----RETVVNRPDDDEAKV 188
Query: 220 IADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278
I D Y + TP + L + SK G R+GW + D
Sbjct: 189 IHDFAYYWPHY--TPITRRQ------DHDIMLFTFSKITGHAGSRIGWALVKDKE----- 235
Query: 279 SGIVDSIKSFLNISS-DPATFIQGAVPQILE---------KTEEEFFSKITDILRETADI 328
+ + ++ ++S + Q +IL E FF ++++ +
Sbjct: 236 --VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEK 293
Query: 329 CCDRLKEIPCITCPK-KPEGSMFVMVKLNYS---LLEGINSDMEFALKLAKEESVIVLPG 384
+ +KE T PK + L G + + +L + V+ G
Sbjct: 294 LREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSEL-RRHKVMSRAG 352
Query: 385 ITVGL-KDWLRITFAVEPSALEDGLGRMKAF 414
G K +R++ L R+
Sbjct: 353 ERCGSDKKHVRVSMLSREDVFNVFLERLANM 383
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 80/414 (19%), Positives = 136/414 (32%), Gaps = 78/414 (18%)
Query: 47 LIPLGHG--DPSAFPSFRTASVAVDAIVHSVRSARFNC---YSSTVGILPARRAIADYLN 101
+I L G +P+ FP + YS + GI +
Sbjct: 33 MISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSPSAGIPELLSWLKQLQI 92
Query: 102 R-------DLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
+ P D+ +T G Q + + ++ PG N+LL P +
Sbjct: 93 KLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGT------- 145
Query: 155 HLEVRHFDLLPAKGWEVDLDA----VEALAD--------------ENTVALVIINP--GN 194
L+ L V D ++L D +NT + P N
Sbjct: 146 -LQS--LHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNN 202
Query: 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS 254
P GN T + ++I E A+K ++I D+ Y L F V+ S S
Sbjct: 203 PTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFS 262
Query: 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSD--PATFIQGAVPQILEKTEE 312
K I G R+G+L P +++ + S P+TF Q + Q+L + E
Sbjct: 263 KI-ISSGLRIGFLTGPKP--------LIERV-ILHIQVSTLHPSTFNQLMISQLLHEWGE 312
Query: 313 EFF----SKITDILRETADICCDRLKEIPCITCPK-----KPEGSMFVMVKLNYSLLEGI 363
E F ++ D D + P MF+ +K+
Sbjct: 313 EGFMAHVDRVIDFYSNQKDAILAAADK----WLTGLAEWHVPAAGMFLWIKVK----GIN 364
Query: 364 NSDMEFALKLAKEESVIVLPGI-----TVGLKDWLRITFA-VEPSALEDGLGRM 411
+ E + A + V++LPG + +LR +F+ P ++ +
Sbjct: 365 DV-KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVL 417
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 66/402 (16%), Positives = 117/402 (29%), Gaps = 73/402 (18%)
Query: 54 DPSAFP-SFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY------ 106
+ F S +V V N G+ AR A YL+
Sbjct: 36 ADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNN 95
Query: 107 -KLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165
L + LT + +++ PG+ RHF LL
Sbjct: 96 SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGY-------------DRHFLLLQ 142
Query: 166 AKGWEV----------DLDAVE-ALADENTVALVIINP--GNPCGNVYTYQHLQKIAE-T 211
G+E+ D+DAVE + +V ++ P NP G + + +++A
Sbjct: 143 TLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQ 202
Query: 212 AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-------VLTLGSISKRWIV-PGWR 263
A + AD+ Y F + S SK I G
Sbjct: 203 AAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK--ITFAGAG 260
Query: 264 LGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE---EEFFSKITD 320
LG++ +S+ N ++ + +I + Q + L + E
Sbjct: 261 LGFVASSEDN--IRW---LSKYLGAQSIGPN--KVEQARHVKFLTEYPGGLEGLMRDHAA 313
Query: 321 ILRETADICCD----RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 376
I+ + L E P+G F+ + E + + +KLA+
Sbjct: 314 IIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLD----TAEPVADRV---VKLAEA 366
Query: 377 ESVIVLPG-----ITVGLKDW-LRITFA-VEPSALEDGLGRM 411
V + P + LR+ + + +
Sbjct: 367 AGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVV 408
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-31
Identities = 58/407 (14%), Positives = 141/407 (34%), Gaps = 56/407 (13%)
Query: 41 KNDTRPL-IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADY 99
+ + G + + + ++DA+ + + Y+ GI R
Sbjct: 42 SAEAKSTTYNATIGMAT-NKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQK 100
Query: 100 L---NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSH- 155
+ N +L + +T T + ++ + ILLP + Y+ +
Sbjct: 101 MLRDNPELSID-NMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNG 159
Query: 156 LEVRHFDLLPAKGWEVDLDAVEAL---ADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
++ + + G D++ +++ V +++ P NP G T++ + I E
Sbjct: 160 ANLQTYPIFDKDG-HYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAI 218
Query: 213 KKLG-----IMVIADEVYDHLAFGNTPFVPM-----GVFGSIVPVLTLGSISKRWIVPGW 262
K L ++ + D+ Y L + + + + + + + L +K + G+
Sbjct: 219 KALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGF 278
Query: 263 RLGWLVTSDPNGILQDSGIVDSIKSFL------NISSDPATFIQGAVPQILEKTEEEFFS 316
R+G++ D + +++ + NISS Q AV +L+ ++
Sbjct: 279 RVGFMT-----FGTSDQTTKEVLEAKVKGLIRSNISS-GPLPTQSAVKHVLKNNKQFDKE 332
Query: 317 KITDI--LRETADICCDRLKE------IPCITCPKKPEGSMFVMVKLNYSLLEGINSDME 368
+I L+E ++ + + F+ +K++ ++ +
Sbjct: 333 IEQNIQTLKERYEVTKEVVYADQYHSHWQAYD----FNSGYFMAIKVH-----DVDPE-A 382
Query: 369 FALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAF 414
L + S+ V+ +RI F+ VE + +
Sbjct: 383 LRKHLIDKYSIGVIALNATD----IRIAFSCVEKDDIPHVFDSIAKA 425
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 8e-31
Identities = 68/431 (15%), Positives = 119/431 (27%), Gaps = 82/431 (19%)
Query: 28 VRGVLNSLLENLNKNDTRPL-IPLGHG--DPSAFP-SFRTASVAVDAIVHSVRSARFNCY 83
+ V + + + L + L G S S+ N Y
Sbjct: 14 LAQVREEVTAKYAELKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRN-Y 72
Query: 84 SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVIL--------------TV 129
+GI R A+ L L D V G + I L
Sbjct: 73 GGLLGIADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPW 126
Query: 130 LARPGANILLPRPG-------FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE 182
A L P PG ++ +P D+ V L +
Sbjct: 127 SAEEKVKWLCPVPGYDRHFTITEHFGFE----------MINVPMTDEGPDMGVVRELVKD 176
Query: 183 NTVALVIINP--GNPCGNVYTYQHLQKIAETAKK-LGIMVIADEVYDHLAFGNTPFVPMG 239
V + P GNP G ++ Q +++AE + ++ D Y + +
Sbjct: 177 PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHN 236
Query: 240 VFGSIVP------VLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS 292
V + S SK I G + + +S N ++ S + I
Sbjct: 237 VIEFAQAAGNPNRFWFMSSTSK--ITHAGSGVSFFASSKEN--IEW---YASHANVRGIG 289
Query: 293 SDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDRLKE----IPCITCPKKPE 346
+ Q A Q + K L + + L P
Sbjct: 290 PN--KLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKW-TSPT 346
Query: 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG-----ITVGLKDW-LRITFA-V 399
G F+ V ++ G S + ++LAKE + + + + +R+ +
Sbjct: 347 GGYFISVD----VVPGTASRV---VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLP 399
Query: 400 EPSALEDGLGR 410
+ LE +
Sbjct: 400 PVAELEVAMDG 410
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 61/424 (14%), Positives = 116/424 (27%), Gaps = 65/424 (15%)
Query: 28 VRGVLNSLLENLNKNDTRPL-IPLGHG--DPSAFP-SFRTASVAVDAIVHSVRSARFNCY 83
+ + ++ ++ L + L G + ++ + Y
Sbjct: 15 IGLFHEDIKRKFDELKSKNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNY 74
Query: 84 SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI--------------EVILTV 129
GI+ R+ AD L + V + I + +
Sbjct: 75 GGLDGIVDIRQIWADLLGVP------VEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPW 128
Query: 130 LARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVI 189
+ P PG Y + +P D+DAVE L V +
Sbjct: 129 SKEETVKWICPVPG--YDRHFSITERFGFE-MISVPMNEDGPDMDAVEELVKNPQVKGMW 185
Query: 190 INP--GNPCGNVYTYQHLQKIAETAKK-LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246
+ P NP G T ++++ V+ D Y + + + G
Sbjct: 186 VVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEA 245
Query: 247 ------VLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFI 299
S SK I G + + +TS N I +
Sbjct: 246 AGNPNRFWAFTSTSK--ITLAGAGVSFFLTSAEN-----RKWYTGHAGIRGIGPN--KVN 296
Query: 300 QGAVPQILEKTE--EEFFSKITDILRETADICCDRL-KEIPCITCPK--KPEGSMFVMVK 354
Q A + E K L + + L + + P G F+ +
Sbjct: 297 QLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLD 356
Query: 355 LNYSLLEGINSDMEFALKLAKEESVIVLPG-----ITVGLKDW-LRITFA-VEPSALEDG 407
++ G S + +LAKE + + + ++ LR+ + LE
Sbjct: 357 ----VVPGTASRV---AELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVA 409
Query: 408 LGRM 411
+ +
Sbjct: 410 MDGV 413
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 62/345 (17%), Positives = 135/345 (39%), Gaps = 48/345 (13%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
A+ D+ + Y +D+ G AI + + + G +L+ P +P + +
Sbjct: 74 AVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLN 133
Query: 155 HLEVRHFDLLPAKG-WEVDLDAVEA-LADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
+ ++ L G +++D + +E + + + ++ NP NP G V+ + L++I
Sbjct: 134 NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLC 193
Query: 213 KKLGIMVIADEVYDH--LAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLG 265
+K +++++DE+ H L V F ++ P L L S +K + + G
Sbjct: 194 QKHHVILVSDEI--HQDLTLFGHEHVS---FNTVSPDFKDFALVLSSATKTFNIAG---- 244
Query: 266 WLVTSDPNGILQDSGIVDSIKSFLNIS--SDPATFIQGAVPQILEKTE------EEFFSK 317
S I+++ + K ++ + ++ A TE + +
Sbjct: 245 -TKNS--YAIIENPTLCAQFKHQQLVNNHHEVSSLGYIA-------TETAYRYGKPWLVA 294
Query: 318 ITDILRETADICCDRLKE-IPCITCPKKPEGS--MFVMVKLNYSLLEGINSDMEFALKLA 374
+ +L E + + P + KP+G+ ++ L++S G+ D L
Sbjct: 295 LKAVLEENIQFAVEYFAQEAPRLK-VMKPQGTYLIW----LDFSDY-GLTDD-ALFTLLH 347
Query: 375 KEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDR 417
+ VI+ G G + R+ A S +E+ R+ +
Sbjct: 348 DQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLPK 392
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 65/344 (18%), Positives = 136/344 (39%), Gaps = 47/344 (13%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
A+ D+ ++ Y + +D+ G AI + L + G +L+ P + + +
Sbjct: 104 AVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLN 163
Query: 155 HLEVRHFDLLPAKG-WEVDLDAVEA-LADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
+ L G +E+D + +E + D N ++ +P NP G V+ L KIAE
Sbjct: 164 DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELC 223
Query: 213 KKLGIMVIADEVYDH--LAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLG 265
KK G+++++DE+ H LA ++ + L S +K + + G
Sbjct: 224 KKHGVILVSDEI--HQDLALFGNTHHS---LNTLDASYKDFTIILSSATKTFNIAG---- 274
Query: 266 WLVTSDPNGILQDSGIVDSIKSFLNIS--SDPATFIQGAVPQILEKTE------EEFFSK 317
S I+Q+ + + + + T A T+ + + +
Sbjct: 275 -TKNS--FAIIQNESLRRKFQYRQLANNQHEVPTVGMIA-------TQAAFQYGKPWLEE 324
Query: 318 ITDILRETADICCDRLKEIPCITCPKKPEGS--MFVMVKLNYSLLEGINSDMEFALKLAK 375
+ ++ + L+ I +PEG+ ++ L++S I + + KL
Sbjct: 325 LKTVIEGNIKLVIKELEAKTKIK-VMEPEGTYLVW----LDFSAY-AIAQP-QLSEKLQN 377
Query: 376 EESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDR 417
E V++ G G K + R+ A + +++ L R+ + + +
Sbjct: 378 EAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFGK 421
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 60/348 (17%), Positives = 122/348 (35%), Gaps = 44/348 (12%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
+ ++ + + D + T G A+ + +PG +++ P + + +
Sbjct: 74 TVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ 133
Query: 155 HLEVRHFDLLPAKG-WEVDLDAVEA-LADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
++ +LL G + +D +E D+N AL+ +P NP G V+ LQKI +
Sbjct: 134 ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIV 193
Query: 213 KKLGIMVIADEVYDH--LAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLG 265
K +M+ +DE+ H L F SI +T + SK + + G
Sbjct: 194 LKSDLMLWSDEI--HFDLIMPGYEHTV---FQSIDEQLADKTITFTAPSKTFNIAG---- 244
Query: 266 WLVTSDPNGILQDSGIVDSIKSFLNIS--SDPATFIQGAVPQILEKTE------EEFFSK 317
+ S N I+++ I + + + T A E ++
Sbjct: 245 -MGMS--NIIIKNPDIRERFTKSRDATSGMPFTTLGYKA-------CEICYKECGKWLDG 294
Query: 318 ITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 376
++ + I D + P I EG+ +++ L ++ + +
Sbjct: 295 CIKVIDKNQRIVKDFFEVNHPEIK-APLIEGTYLQW--IDFRAL-KMDHK-AMEEFMIHK 349
Query: 377 ESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRHAKKQ 422
+ G G + RI A S +++ L R+ +
Sbjct: 350 AQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKNRH 397
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 4e-23
Identities = 64/341 (18%), Positives = 134/341 (39%), Gaps = 48/341 (14%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
A+AD+ + + D G AI ++ PG IL+ P + + + +
Sbjct: 70 AVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGN 129
Query: 155 HLEVRHFDLLPAKG-WEVDLDAVEA-LADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
V DL+ + V+ +E LA + +V NP NP G ++ + +++IAE
Sbjct: 130 GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELC 189
Query: 213 KKLGIMVIADEVYDH--LAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLG 265
K +++I+DE+ H L + P ++ V++L S SK + +
Sbjct: 190 AKHQVLLISDEI--HGDLVLTDEDITP---AFTVDWDAKNWVVSLISPSKTFNLAA---- 240
Query: 266 WLVTSDPNGILQDSGIVDSIKSFLNIS--SDPATFIQGAVPQILEKTE------EEFFSK 317
L + I+ + + + ++ +P A ++ +
Sbjct: 241 -LHAA--CAIIPNPDLRARAEESFFLAGIGEPNLLAIPA-------AIAAYEEGHDWLRE 290
Query: 318 ITDILRETADICCDRLKE-IPCITCPKKPEGS--MFVMVKLNYSLLEGINSDMEFALKLA 374
+ +LR+ + L + +P + S + ++ S L G+N++ +F L
Sbjct: 291 LKQVLRDNFAYAREFLAKEVPEVK-VLDSNASYLAW----VDISAL-GMNAE-DFCKYLR 343
Query: 375 KEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKA 413
++ +I+ G +++RI A + DG+ R+K
Sbjct: 344 EKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQ 384
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 5e-23
Identities = 65/323 (20%), Positives = 120/323 (37%), Gaps = 68/323 (21%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
++I +Y KL + L G A E+I + IL+ P + YE A
Sbjct: 67 NKSIENY------LKLKDIGIVLGNG---ASEII-ELSISLFEKILIIVPSYAEYEINAK 116
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQKIAET 211
+ V L + +D + + + D+ VII NP NP G + + + +
Sbjct: 117 KHGVSVVFSYLD--ENMCIDYEDIISKIDDVD--SVIIGNPNNPNGGLINKEKFIHVLKL 172
Query: 212 AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-------VLTLGSISKRWIVPGWRL 264
A++ +I DE + F S V + + +++K + +PG R
Sbjct: 173 AEEKKKTIIIDEAFIE-------FTGDPSS-SFVGEIKNYSCLFIIRAMTKFFAMPGIRF 224
Query: 265 GWLVTSDPNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDI 321
G+ +T++ I IK+ NI+ A + A L+ + + +
Sbjct: 225 GYGITNNKE-------IAAKIKAKQNPWNINC-FA---EMAAINCLK--DTNYIEESLLW 271
Query: 322 LRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 381
+++ + L +I I P + FV+ + LE I+ + + L KE
Sbjct: 272 IKKERKRFIEELNKIGFIKRVFSPHAN-FVLCR-----LENISGE-KLYDSLLKE----- 319
Query: 382 LPGITV-------GLKD-WLRIT 396
I + GL D ++R
Sbjct: 320 --DIVIRRCCNFIGLDDSFVRFA 340
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 5e-23
Identities = 65/322 (20%), Positives = 118/322 (36%), Gaps = 65/322 (20%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
+A+A + + + G T++I + ++ PGF Y
Sbjct: 65 HQALARHHQ------VPASWILAGNGETESIFTV--ASGLKPRRAMIVTPGFAEYGRALA 116
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
S E+R + L A GW+ DA+ + L + P NP G + LQ IA+
Sbjct: 117 QSGCEIRRWSLREADGWQ-LTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRC 175
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-------VLTLGSISKRWIVPGWRLG 265
K L I +I DE AF F+P +P + L S++K + +PG RLG
Sbjct: 176 KSLNINLILDE-----AF--IDFIPHET--GFIPALKDNPHIWVLRSLTKFYAIPGLRLG 226
Query: 266 WLVTSDPNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDIL 322
+LV SD + ++ ++++ A A L+ + + L
Sbjct: 227 YLVNSDDA-------AMARMRRQQMPWSVNA-LA---ALAGEVALQ--DSAWQQATWHWL 273
Query: 323 RETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 382
RE L ++P +T + +++++ D++ +L +
Sbjct: 274 REEGARFYQALCQLPLLT-VYPGRAN-YLLLRCE-------REDIDLQRRLLTQ------ 318
Query: 383 PGITV-------GL-KDWLRIT 396
I + GL + R+
Sbjct: 319 -RILIRSCANYPGLDSRYYRVA 339
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 7e-23
Identities = 64/337 (18%), Positives = 131/337 (38%), Gaps = 42/337 (12%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
AIA + + + V + ++ + G +++ P + + +
Sbjct: 72 AIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN 131
Query: 155 HLEVRHFDLLPAKG-WEVDLDAVEA-LADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
V L W D+ +EA LA +++ +P NP G V+T L+ +A+
Sbjct: 132 QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLC 191
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLVTS 270
++ G+ VI+DE++ + +G P +P + ++ L S SK + +P L +
Sbjct: 192 ERHGVRVISDEIHMDMVWGEQPHIP---WSNVARGDWALLTSGSKSFNIPA-----LTGA 243
Query: 271 DPNGILQDSGIVDSIKSFLNIS---SDPATFIQGAVPQILEKTE------EEFFSKITDI 321
GI+++S D+ S L S P+ A + +
Sbjct: 244 --YGIIENSSSRDAYLSALKGRDGLSSPSVLALTA-------HIAAYQQGAPWLDALRIY 294
Query: 322 LRETADICCDRLKE-IPCITCPKKPEGS--MFVMVKLNYSLLEGINSDMEFALKLAKEES 378
L++ D++ P + + P+ + + L+ L I+ + L ++E
Sbjct: 295 LKDNLTYIADKMNAAFPELN-WQIPQSTYLAW----LDLRPL-NIDDN-ALQKALIEQEK 347
Query: 379 VIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKA 413
V ++PG T G + ++R+ S LE G+ +
Sbjct: 348 VAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLIN 384
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 8e-22
Identities = 51/334 (15%), Positives = 115/334 (34%), Gaps = 43/334 (12%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
A A++ Y+ P+ ++ + + + + + +++P P +P + + +
Sbjct: 66 ATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSAT 125
Query: 155 HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214
E D ++L VE ++++ NP NP G V+ + L ++ + A +
Sbjct: 126 QREGIFIDA----TGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHR 181
Query: 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWLVT 269
V+ DE++ L F + +T+ + SK W + G L
Sbjct: 182 YDARVLVDEIHAPLVFDGQ-HTV---AAGVSDTAASVCITITAPSKAWNIAG-----LKC 232
Query: 270 SDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE------EEFFSKITDIL 322
+ I + + + I +T A E +F ++ L
Sbjct: 233 A--QIIFSNPSDAEHWQQLSPVIKDGASTLGLIA-------AEAAYRYGTDFLNQEVAYL 283
Query: 323 RETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 381
+ D + + IP + + + +++ + + ++ V +
Sbjct: 284 KNNHDFLLHEIPKRIPGAK-ITPMQATYLMW--IDFR---DTTIEGSPSEFFIEKAKVAM 337
Query: 382 LPGITVGL--KDWLRITFAVEPSALEDGLGRMKA 413
G G + R+ FA LE+ + RM
Sbjct: 338 NDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAK 371
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 8e-22
Identities = 67/339 (19%), Positives = 139/339 (41%), Gaps = 45/339 (13%)
Query: 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHS 154
+I ++L R +K+ + + + G AI +++ L + I++ P + + + ++
Sbjct: 75 SIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNN 134
Query: 155 HLEVRHFDLLPAKG--WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
+ E+ L + + +D + +E + + ++ NP NP G V+T L+K+ +
Sbjct: 135 NRELIISPLQKLENGNYIMDYEDIENKIKDVKL-FILCNPHNPVGRVWTKDELKKLGDIC 193
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-----VLTLGSISKRWIVPGWRLGWL 267
K + +I+DE++ + +P SI +T + +K + + G L
Sbjct: 194 LKHNVKIISDEIHSDIILKKHKHIP---MASISKEFEKNTITCMAPTKTFNIAG-----L 245
Query: 268 VTSDPNGILQDSGIVDSIKSFLNIS--SDPATFIQGAVPQILEKTE------EEFFSKIT 319
+S +L D + F A TE E +
Sbjct: 246 QSS--YVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVA-------TEASYNNGESWLESFL 296
Query: 320 DILRETADICCDRLKE-IPCITCPKKPEGS--MFVMVKLNYSLLEGINSDMEFALKLAKE 376
+ L D + E +P + +KPEG+ ++ +++S L G++ + E L ++
Sbjct: 297 EYLESNIDFAIKYINENMPKLK-VRKPEGTYLLW----VDFSAL-GLSDE-ELESILVQK 349
Query: 377 ESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKA 413
V + G + G+ + RI A S LE+ L R+K
Sbjct: 350 GKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKN 388
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 59/313 (18%), Positives = 113/313 (36%), Gaps = 48/313 (15%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGA-NILLPRPGFPYYEARA 151
A Y + P+ V ++ G + IE+++ PG IL P + Y A
Sbjct: 64 IENYAQYAG------VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA 117
Query: 152 THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQKIAE 210
+E R L W++DL + D V +V + +P NP G + Q + + E
Sbjct: 118 ETIGVECRTVPTLD--NWQLDLQGISDKLDG--VKVVYVCSPNNPTGQLINPQDFRTLLE 173
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP----VLTLGSISKRWIVPGWRLGW 266
+ I+V DE Y F P + + L ++SK + + G R G+
Sbjct: 174 LTRGKAIVVA-DEAY-------IEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGF 225
Query: 267 LVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326
+ ++ ++ ++ + + +S+ + Q L + +
Sbjct: 226 TLANEE--VIN---LLMKVIAPYPLST----PVADIAAQALSPQGIVAMRERVAQIIAER 276
Query: 327 DICCDRLKEIPCITCPKKPEGSM--FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP- 383
+ LKEIPC+ ++ S +++ + K ++ +I+
Sbjct: 277 EYLIAALKEIPCV---EQVFDSETNYILARFK---------ASSAVFKSLWDQGIILRDQ 324
Query: 384 GITVGLKDWLRIT 396
L LRIT
Sbjct: 325 NKQPSLSGCLRIT 337
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 58/308 (18%), Positives = 109/308 (35%), Gaps = 39/308 (12%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R +A Y+ + ++ D+++ G + ++ +L PG L +P + + A
Sbjct: 75 RDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK 134
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQKIAET 211
+H E + +D+D +V + P NP G+V + +++I
Sbjct: 135 GTHTEFIAVSR--GADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINV 192
Query: 212 AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271
A + VI DE Y F +P + ++ ++SK + G RLG+ V ++
Sbjct: 193 APGI---VIVDEAY--AEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFV-AN 246
Query: 272 PNGILQDSGIVDSIK-SFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICC 330
P I V ++ + ++S+ Q A L + L
Sbjct: 247 PAFI----DAVMLVRLPY-HLSA----LSQAAAIVALR--HSADTLGTVEKLSVERVRVA 295
Query: 331 DRLKEIPCITCPKKPEGSM--FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388
RL+E+ P S FV + + V++ VG
Sbjct: 296 ARLEELGYAVVP-----SESNFVFFGD------FSDQH-AAWQAF-LDRGVLIRD---VG 339
Query: 389 LKDWLRIT 396
+ LR T
Sbjct: 340 IAGHLRTT 347
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 54/312 (17%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R+ +A + + + +T G T A I A G+ L+ P F YE
Sbjct: 56 RQMLAKR------NSVDNNAILVTNGPTAAFYQI--AQAFRGSRSLIAIPSFAEYEDACR 107
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
EV + + + N + NP NP G + + ++
Sbjct: 108 MYEHEVCFYPS---------NEDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDH 158
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272
+ D+ Y ++F + ++ + S S + +PG R+G++V +
Sbjct: 159 P--DTTFVLDQSY--VSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN-- 212
Query: 273 NGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329
+ + +F +++ A A IL F+ +
Sbjct: 213 ------KDFMKRVAAFSTPWAVNA-LA---IEAAKFILI--HPAQFTLPIRKWQRNTVDF 260
Query: 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV-----LPG 384
L + + + F +++L + E + +E ++++ G
Sbjct: 261 ITALNRLDGVE-VHPSGTT-FFLLRL------KKGTAAELKKYMLEEYNMLIRDASNFRG 312
Query: 385 ITVGLKDWLRIT 396
+ + ++RIT
Sbjct: 313 L---DESYVRIT 321
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 66/338 (19%), Positives = 125/338 (36%), Gaps = 46/338 (13%)
Query: 67 AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126
+ + N Y R + + + + +V L G + I ++
Sbjct: 48 LRSELAARLGEVALNRYPVPSS-EALRAKLKEVMQVP-----AGMEVLLGNGSDEIISML 101
Query: 127 LTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186
ARPGA ++ P PGF Y A + LE L + +D A+ A E+ A
Sbjct: 102 ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPA 159
Query: 187 LVII-NPGNPCGNVYTYQHLQKIAETA--KKLGIMVIADEVYDHLAFGNTPFVP-MGVFG 242
+V + P NP GN++ ++ I A +V+ DE Y F ++ + FG
Sbjct: 160 IVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP--FAQESWMSRLTDFG 217
Query: 243 SIVPVL-TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK-SFLNISSDPATFIQ 300
+++ V+ T+ SK + G RLG++ DP + +D ++ + N++ +
Sbjct: 218 NLL-VMRTV---SK-LGLAGIRLGYVA-GDPQWL----EQLDKVRPPY-NVNV----LTE 262
Query: 301 GAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360
LE + LR + + +T P + F++ ++
Sbjct: 263 ATALFALE--HVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF--PSAANFLLARV----- 313
Query: 361 EGINSDMEFALKLAKEESVIV--LPGITVGLKDWLRIT 396
D V++ + + L + LR+T
Sbjct: 314 ----PDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVT 347
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 60/308 (19%), Positives = 104/308 (33%), Gaps = 39/308 (12%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R+ +AD+ L +++ T G + IE++ VL N ++ P F Y A
Sbjct: 73 RKEVADFYQ------LEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL 126
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
EVR L + E DL+ + DE T + I NP NP GN +Q +
Sbjct: 127 IEGAEVREIPL--LQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRV 184
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272
++V+ DE Y + + ++ + SK + + R+G+ +
Sbjct: 185 PS-DVLVVLDEAYIEYVTPQPE-KHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242
Query: 273 NGILQDSGIVDSIKS----FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328
I+ + F N +S Q + ++ ++ F +
Sbjct: 243 --------IIRQLNIVRPPF-NTTS-IG---QKLAIEAIK--DQAFIGECRTSNANGIKQ 287
Query: 329 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388
K + P FV++ L L K I G +G
Sbjct: 288 YEAFAKRFEKVKLY--PANGNFVLIDLGIE-------AGTIFSYLEKN-GYITRSGAALG 337
Query: 389 LKDWLRIT 396
+RIT
Sbjct: 338 FPTAVRIT 345
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 50/315 (15%), Positives = 103/315 (32%), Gaps = 51/315 (16%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
+A + + + LT G ++ I + A A +++P + E A
Sbjct: 57 GNKLAAHHQ------VEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK 110
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA-LVII-NPGNPCGNVYTYQHLQKIAE 210
+ ++V + W D++ ++A + +V + NP NP G + ++
Sbjct: 111 IAGMKVTKVKM--LDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIA 168
Query: 211 TAKKLGIMVIADEVYDHLAFGNTPFVPMG---VFGSIVPVLTLGSISKRWIVPGWRLGWL 267
+ M I DE Y F N P + ++ L + SK + G R+G+
Sbjct: 169 SKPA-NTMFIVDEAYAE--FVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYA 225
Query: 268 VTSDPNGILQDSGIVDSIK----SFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323
V ++ + I+ A + + F +
Sbjct: 226 VAHPT--------VIALMGRYVAGE-KINF-SG---VDAALASMN--DSAFITYSKKSND 270
Query: 324 ETADICCDRLKEIPCITCPKKPEGSM--FVMVKLNYSLLEGINSDMEFALKLAKEESVIV 381
+ I L+++ P S FV +L ++ +A + V++
Sbjct: 271 VSRQILLKALEDLKLPYLP-----SEGNFVFHQLV-------VPLKDYQTHMA-DAGVLI 317
Query: 382 LPGITVGLKDWLRIT 396
+W RI+
Sbjct: 318 GRA-FPPADNWCRIS 331
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 7e-14
Identities = 53/306 (17%), Positives = 96/306 (31%), Gaps = 48/306 (15%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
R +A++ + D++ L G + + I + PGF Y AR
Sbjct: 57 MRKLAEH------FSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIA 108
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
S L L +D + +V+ NP NP G + L ++ +
Sbjct: 109 VSGLRHFEIGL--TDDLLLDPND--LAQVSRDDCVVLANPSNPTGQALSAGELDQLRQ-- 162
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272
+ G ++I DE Y + + + + + + SK + + G RLG L
Sbjct: 163 -RAGKLLI-DETYVD--YSSFRARGLAYGENELVFRSF---SKSYGLAGLRLGALF-GPS 214
Query: 273 NGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332
I + + F N+ + A+ L+ + D
Sbjct: 215 ELI----AAMKRKQWFCNVGT-LD---LHALEAALD--NDRAREAHIAKTLAQRRRVADA 264
Query: 333 LKEIPCITCPKKPEGSM--FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 390
L+ + S FV+V+ + L E + V GL
Sbjct: 265 LRGLGYRVAS-----SEANFVLVEN--------AAGERTLRFLR-ERGIQVKDAGQFGLH 310
Query: 391 DWLRIT 396
+RI+
Sbjct: 311 HHIRIS 316
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 51/314 (16%), Positives = 104/314 (33%), Gaps = 48/314 (15%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
+ +A YK+ +++ + G Q IE + L F YE A
Sbjct: 71 KSTLAQK------YKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK 124
Query: 153 HSHLEVRHFDLLPAKGWEV-DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAET 211
+ + + + + + + + P NP G + +
Sbjct: 125 QCGAKCYK---TQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKG 181
Query: 212 AKKLGIMVIADEVYDHLAFGNTP---FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268
+ +V+ D Y+ A P + VL LG+ SK + + G R+G+ +
Sbjct: 182 VNE-DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI 240
Query: 269 TSDPNGILQDSGIVDSIKS----FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRE 324
+ I+ + F N+S+ A A ++ ++EF K +
Sbjct: 241 ANAN--------IISAFYKLRAPF-NVSN-LA---LKAAVAAMD--DDEFTEKTLENNFS 285
Query: 325 TADICCDRLKEIPCITCPKKPEGSM--FVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 382
++ + K+ S F+ + + + KL K + +I+
Sbjct: 286 QMELYKEFAKKHNIKIID-----SYTNFITYFF------DEKNSTDLSEKLLK-KGIIIR 333
Query: 383 PGITVGLKDWLRIT 396
+ GL + +RIT
Sbjct: 334 NLKSYGL-NAIRIT 346
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 60/339 (17%), Positives = 105/339 (30%), Gaps = 57/339 (16%)
Query: 67 AVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124
V AI+ + Y S R + P + + G + +
Sbjct: 44 VVKAILEELGPDGAALRIYPSASS-QKLREVAGELYG------FDPSWIIMANGSDEVLN 96
Query: 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT 184
++ A G I P + YY A VR F L D
Sbjct: 97 NLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGL------TGDFRIAGFPERYEG 150
Query: 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP-MGVFGS 243
+ P P G L+ I E A++ M++ DE Y F + + + +
Sbjct: 151 KVFFLTTPNAPLG---PSFPLEYIDELARRCAGMLVLDETYAE--FAESNALELVRRHEN 205
Query: 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK----SFLNISSDPATFI 299
+V TL SK + + G R+G + + P ++ ++ + N+ A
Sbjct: 206 VVVTRTL---SKSYSLAGMRIGLAI-ARPE-------VIAALDKIRDHY-NLDR-LA--- 249
Query: 300 QGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM--FVMVKLNY 357
Q A L ++ + S+ +RET + L+ I P S ++
Sbjct: 250 QAACVAALR--DQAYLSECCRRIRETREWFTTELRSIGYDVIP-----SQGNYLFAT--- 299
Query: 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT 396
+ L V+V L +RI+
Sbjct: 300 --PPDRDGK-RVYDGL-YARKVLVRHFSDPLLAHGMRIS 334
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 63/337 (18%), Positives = 115/337 (34%), Gaps = 63/337 (18%)
Query: 67 AVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126
VD + + S Y + I YL+ D LS ++V + G + I
Sbjct: 37 LVDEVFRRLNSDALRIYYDSPD-EELIEKILSYLDTD---FLSKNNVSVGNGADE----I 88
Query: 127 LTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186
+ V+ + P + Y A + L DL + +
Sbjct: 89 IYVMMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK------DLR-IPEVNVGEGDV 141
Query: 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246
+ I NP NP G+V+ + +++I +T V DE Y F +V +
Sbjct: 142 VFIPNPNNPTGHVFEREEIERILKTG----AFVALDEAY--YEFHGESYVDF------LK 189
Query: 247 ----VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK-SFLNISSDPATFIQG 301
+ + + SK + + R+G++V + I + ++ F N+S Q
Sbjct: 190 KYENLAVIRTFSKAFSLAAQRVGYVV-ASEKFI----DAYNRVRLPF-NVSY----VSQM 239
Query: 302 AVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM--FVMVKLNYSL 359
L+ E F + T + E + L+E+ S FV V
Sbjct: 240 FAKVALD--HREIFEERTKFIVEERERMKSALREMGYRITD-----SRGNFVFVF----- 287
Query: 360 LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT 396
+E + L + ++V V ++ +RIT
Sbjct: 288 MEKEEKE-RLLEHL-RTKNVAVRS-----FREGVRIT 317
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 8e-06
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 164 LPAKGWEV-----DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIM 218
L G V + +AV T A+ + NP V L+ +A A++ G+
Sbjct: 116 LSLMGVTVRYVDPEPEAVREALSAKTRAVFVETVANPALLVP---DLEALATLAEEAGVA 172
Query: 219 VIADEVYDHLAFGNTPF 235
++ D FG
Sbjct: 173 LVVDN-----TFGAAGA 184
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 20/144 (13%), Positives = 49/144 (34%), Gaps = 26/144 (18%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA 151
+ +L D +T G +A ++ LA+ A +++ +
Sbjct: 59 IHNQLPKFLGCD--------VARVTNGAREAKFAVMHSLAKKDAWVVMDE-----NCHYS 105
Query: 152 TH-----SHLEVRHFDLLPAKGWEVDLDAVEALADENT----VALVIIN-PGNPCGNVYT 201
++ + L + + + + +E V L +I P GN+
Sbjct: 106 SYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNL-- 163
Query: 202 YQHLQKIAETAKKLGIMVIADEVY 225
++KIA+ + + ++ + Y
Sbjct: 164 -PDVKKIAKVCSEYDVPLLVNGAY 186
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 164 LPAKGWEV------DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI 217
LP+ G EV D AVE DE T L + NP V L+ +++ GI
Sbjct: 142 LPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVA---DLEALSKVVHAKGI 198
Query: 218 MVIAD 222
++ D
Sbjct: 199 PLVVD 203
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 72/395 (18%), Positives = 133/395 (33%), Gaps = 119/395 (30%)
Query: 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHS 74
+A EL+ A + + GV LG G +T VA+D
Sbjct: 142 QALLELRPAKNVLIDGV------------------LGSG--------KT-WVALDV---- 170
Query: 75 VRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVY-LTLGCTQAIEVILTVLARP 133
S + C ++ L L + E +L +L +
Sbjct: 171 CLSYKVQC-------------------------KMDFKIFWLNLKNCNSPETVLEMLQK- 204
Query: 134 GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193
LL + P + +R+ HS + + L + + L+++
Sbjct: 205 ----LLYQID-PNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYEN----CLLVLL-- 251
Query: 194 NPCGNVYTYQHLQKIAETAKKLGIMVI-AD-EVYDHLAFGNTPFVPMG-VFGSIVPVLTL 250
NV + + K I++ +V D L+ T + + ++ P
Sbjct: 252 ----NVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 251 GSISKRWIVPGWRLGWL----VTSDPNGILQDSGIVDSIKSFLN-------ISSDP-ATF 298
+ K ++ R L +T++P + S I +SI+ L ++ D T
Sbjct: 305 SLLLK-YL--DCRPQDLPREVLTTNP---RRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 299 IQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCIT-CPKKPEGSMFVMVKL- 355
I+ ++ +LE E + F +++ + +A I L + M V+ KL
Sbjct: 359 IESSL-NVLEPAEYRKMFDRLS-VFPPSAHIPTILL----SLIWFDVIKSDVMVVVNKLH 412
Query: 356 NYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 390
YSL+E +ES I +P I + LK
Sbjct: 413 KYSLVEKQP-----------KESTISIPSIYLELK 436
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 5e-04
Identities = 60/352 (17%), Positives = 103/352 (29%), Gaps = 117/352 (33%)
Query: 24 SGITVRGVLNSLLENLNKNDTRPLIP--LGHGDPSAFPS--FRTASVAVDAIVHSVRS-- 77
+ T L+ L ++ + L+ L P P T + I S+R
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 78 ARFNCYSSTVGILPARRAIADYLN-------RDLPYKLS--PDDVYLTLGC--------- 119
A ++ V I LN R + +LS P ++
Sbjct: 342 ATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 120 TQAIEVILTVLARPGANILLPRPGFPYY---------------EARATHSHLEVRHFDLL 164
+ V++ L + L+ + A H + V H+++
Sbjct: 401 KSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIP 456
Query: 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQ---KIAETAKKLGIMVIA 221
K ++ D + P + Y Y H+ K E +++ +
Sbjct: 457 --KTFDSD------------------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--- 493
Query: 222 DEVYDHLAFGNTPFV---------PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272
V+ L F F+ GSI+ L K +I +DP
Sbjct: 494 RMVF--LDFR---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---------NDP 539
Query: 273 NGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFF-SKITDILR 323
+ +V++I F L K EE SK TD+LR
Sbjct: 540 ----KYERLVNAILDF------------------LPKIEENLICSKYTDLLR 569
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 14/105 (13%)
Query: 122 AIEVILTVLARPGANILLPRP--G--FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177
AI L L + G +I+ G + + VR D + +
Sbjct: 91 AITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIR 143
Query: 178 ALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
A T + I P NP ++ ++ +A A + G +++ D
Sbjct: 144 AAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVD 185
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 164 LPAKGWEV-------DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216
L G EV + AL DE T A + + GNP N+ L+ +A+ A++ G
Sbjct: 118 LKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIP---DLEALAQAAREKG 174
Query: 217 IMVIAD 222
+ +I D
Sbjct: 175 VALIVD 180
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 122 AIEVILTVLARPGANILLPRP--G--FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177
AI L L RPG +LL G F + +++RH D+ DL A+E
Sbjct: 92 AITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALE 144
Query: 178 ALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
A T + +P NP ++ + +A+ A+K G V+ D
Sbjct: 145 AAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVD 186
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV------DLDA 175
A+ L L G ++ R F + ++LP G + DL
Sbjct: 108 AVFTSLGALLGAGDRLVAARSLFG-----SCFVVCS----EILPRWGVQTVFVDGDDLSQ 158
Query: 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222
E T A+ P NP ++ + + E A G V+ D
Sbjct: 159 WERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLD 202
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 122 AIEVILTVLARPGANILLP----RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177
A+ + G ++L+ P + + + FD L +
Sbjct: 109 AVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-------IGADIV 161
Query: 178 ALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL--GIMVIAD 222
NT + + +PG+ V + I + + +++ D
Sbjct: 162 KHLQPNTKIVFLESPGSITMEV---HDVPAIVAAVRSVVPDAIIMID 205
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 422 | |||
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 100.0 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.98 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.98 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.98 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.98 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.98 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.97 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.97 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.97 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.97 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.97 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.97 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.97 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.97 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.97 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.97 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.97 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.97 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.97 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.97 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.97 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.97 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.97 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.97 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.97 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.97 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.97 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.97 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.97 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.97 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.97 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.97 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.97 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.96 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.96 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.96 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.96 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.96 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.96 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.96 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.96 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.96 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.96 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.96 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.96 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.96 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.96 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.96 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.96 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.95 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.95 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.95 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.95 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.95 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.95 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.95 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.95 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.95 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.94 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.94 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.9 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.94 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.94 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.94 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.94 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.94 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.94 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.94 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.93 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.93 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.93 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.93 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.93 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.92 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.91 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.91 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.91 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.9 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.89 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.89 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.89 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.89 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.84 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.82 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.8 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.76 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.72 |
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-54 Score=411.54 Aligned_cols=406 Identities=34% Similarity=0.696 Sum_probs=331.7
Q ss_pred CCCcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCC
Q 014603 9 GNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVG 88 (422)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g 88 (422)
.+.|++.++ .+...+.+.|+++++.+... ..++.++|+|++|+|+....+++++.+.+++.+.+.......|++..+
T Consensus 21 ~~~w~~~~~-~~~~~~~~~i~~~~~~~~~~--~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g 97 (427)
T 3dyd_A 21 QSMWSVRPS-DMAKKTFNPIRAIVDNMKVK--PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIG 97 (427)
T ss_dssp ---CCCCCC-C----------------CCC--CCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTC
T ss_pred ccccCcchh-hHhhcccchHHHHHHHHhhc--ccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 457888888 45555566799998766543 234678899999998754567889999999999988765668988889
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCC
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKG 168 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 168 (422)
.+++|+++++++.+. +..+++++|++|+|+++|++.++.+++++||+|+++.|+|+++...++..|.+++.++..++++
T Consensus 98 ~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 176 (427)
T 3dyd_A 98 FLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKS 176 (427)
T ss_dssp CHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGT
T ss_pred cHHHHHHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccC
Confidence 999999999999765 5567889999999999999999999999999999999999999999999999999999877677
Q ss_pred cccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeE
Q 014603 169 WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVL 248 (422)
Q Consensus 169 ~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i 248 (422)
+.+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++....++..++.+.+++
T Consensus 177 ~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi 256 (427)
T 3dyd_A 177 WEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPIL 256 (427)
T ss_dssp TEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEE
T ss_pred CCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEE
Confidence 88999999999988899999999999999999999999999999999999999999999988877666777777666789
Q ss_pred EEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 328 (422)
+++|+||.|+++|+|+||++++++.... .+++.+.+......+.+++.+.+.++.++|+.....++++.+++++++++.
T Consensus 257 ~~~S~sK~~~~~G~riG~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~ 335 (427)
T 3dyd_A 257 SCGGLAKRWLVPGWRLGWILIHDRRDIF-GNEIRDGLVKLSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADL 335 (427)
T ss_dssp EEEESTTTSSCGGGCCEEEEEECSTTSS-HHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EEeeccccCCCcCcceEEEEecCcchhh-HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997543222 135666776655445688899999999999864567889999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHH
Q 014603 329 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGL 408 (422)
Q Consensus 329 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~ 408 (422)
+.+.|+++|++. +..|.+|+|+|+.++....+...+..+++..+++++||.+.||..|+.++++||+++++++++++++
T Consensus 336 l~~~L~~~~g~~-~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l 414 (427)
T 3dyd_A 336 CYGALAAIPGLR-PVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEAC 414 (427)
T ss_dssp HHHHHHHSTTEE-EECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHH
T ss_pred HHHHHhcCCCce-ecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHH
Confidence 999999998887 4478889999998874332222356788888877889999999999889999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 014603 409 GRMKAFYDRHAK 420 (422)
Q Consensus 409 ~~l~~~~~~~~~ 420 (422)
++|.++++++++
T Consensus 415 ~~l~~~l~~~~~ 426 (427)
T 3dyd_A 415 SRIQEFCEQHYH 426 (427)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhc
Confidence 999999988753
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-51 Score=389.49 Aligned_cols=403 Identities=29% Similarity=0.548 Sum_probs=327.1
Q ss_pred CcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCH
Q 014603 11 QWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGIL 90 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~ 90 (422)
+|.+..++ ......+.++.+.+.+... ..+.++|+|+.|.|..++.+++++.+.+++.+++.......|++..+..
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~ 78 (416)
T 1bw0_A 3 SWDVSMSN-HAGLVFNPIRTVSDNAKPS---PSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSP 78 (416)
T ss_dssp -CCCCCCH-HHHTCCCHHHHHHHTCCCC---CSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCH
T ss_pred ccccCchh-hhhccccHHHHHHHHHHHh---hcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCH
Confidence 58888884 5555556688877644332 1346789999999864445788999999999998765456798878899
Q ss_pred HHHHHHHHHHhh------cCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc
Q 014603 91 PARRAIADYLNR------DLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164 (422)
Q Consensus 91 ~lr~~ia~~l~~------~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (422)
++|+++++++++ ..|..+++++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.+
T Consensus 79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 158 (416)
T 1bw0_A 79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCR 158 (416)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecC
Confidence 999999999982 24555788999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC----CCCCccc
Q 014603 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT----PFVPMGV 240 (422)
Q Consensus 165 ~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~----~~~~~~~ 240 (422)
+++++.+|++.|++.++++++++++++|+||||.++|.+++++|+++|+++|++||+||+|..+.+++. ...++..
T Consensus 159 ~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 238 (416)
T 1bw0_A 159 PENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVAD 238 (416)
T ss_dssp GGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTS
T ss_pred cccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHH
Confidence 555677999999999988889999999999999999999999999999999999999999999888775 4445555
Q ss_pred cCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 241 ~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
+...+++++++|+||.|+++|+|+||++++++.... ..+...+........+++++.|+++.++|+...+.++++.++
T Consensus 239 ~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 316 (416)
T 1bw0_A 239 FETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNG--PSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVA 316 (416)
T ss_dssp SCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSC--HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred ccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhH--HHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHH
Confidence 555556899999999999999999999997531111 234433333332345778899999999998544678889999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE 400 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~ 400 (422)
+++++++.+.+.|+++|++. +..|.+|+|+|+.++.....+..+..++...+++++||.+.||..|+.++++||+++++
T Consensus 317 ~~~~~~~~l~~~L~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~ 395 (416)
T 1bw0_A 317 KIEESAMYLYNHIGECIGLA-PTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRP 395 (416)
T ss_dssp HHHHHHHHHHHHHTTSTTEE-ECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSC
T ss_pred HHHHHHHHHHHHHHhCCCCc-ccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCC
Confidence 99999999999999988887 44677889999888643221112566777777767899999999888788999999988
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q 014603 401 PSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~~~ 420 (422)
++++++++++|.+++++..+
T Consensus 396 ~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 396 VEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=384.62 Aligned_cols=377 Identities=22% Similarity=0.392 Sum_probs=319.5
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.++...+.+.++.+.....+... .++++|+|+.|.+. +++++.+.+++.+.+... ...|++..|.+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ 76 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRR--QGVDLVALTAGEPD----FDTPEHVKEAARRALAQG-KTKYAPPAGIPELREA 76 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHH--TTCCCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHh--cCCCEEEecCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHH
Confidence 5788999999999988876654422 36789999999865 566789999998888653 3578887889999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++++.+|..+++++|++|+|++++++.++++++++||+|+++.|+|+.+...++..|.+++.++.++++++.+|++.
T Consensus 77 ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 156 (385)
T 1b5p_A 77 LAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPER 156 (385)
T ss_dssp HHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHH
T ss_pred HHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHH
Confidence 99999988887888999999999999999999999999999999999999999999999999999998754567899999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
+++.++++++++++++|+||||.++|.+++++|+++|+++|++||+||+|+.+.+++ ...++..+.. +++++++|+||
T Consensus 157 l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~-~~~i~~~s~SK 234 (385)
T 1b5p_A 157 VRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAP-EHTLTVNGAAK 234 (385)
T ss_dssp HHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCT-TTEEEEEESTT
T ss_pred HHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCC-CCEEEEEechh
Confidence 999998889999999999999999999999999999999999999999999988766 4445555544 67899999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHH
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKT--EEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
.|+++|+|+||++++ +++++++...... +.+++.+.|.++.++|+.. ...++++.+++++++++.+.+.
T Consensus 235 ~~~~~G~RiG~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (385)
T 1b5p_A 235 AFAMTGWRIGYACGP--------KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEG 306 (385)
T ss_dssp TTTCGGGCCEEEECC--------HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcccceEEEEeC--------HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999985 4677877766533 3467888999998888641 2467888999999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
|+++ ++. +..|.+++|+|+.++.. + .+..++...++ ++||.+.||..|+.++++|||++++++++++++++|.
T Consensus 307 L~~~-g~~-~~~~~~~~~~~~~~~~~---~-~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~ 379 (385)
T 1b5p_A 307 LTAL-GLK-AVRPSGAFYVLMDTSPI---A-PDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFA 379 (385)
T ss_dssp HHHH-TCC-BCCCSBTTEEEEECTTT---C-SSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGG
T ss_pred HHHC-CCe-ecCCCeeEEEEEecCCC---C-CCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 9988 777 44788889999888631 1 25677777776 7799999999988788999999999999999999998
Q ss_pred HHHH
Q 014603 413 AFYD 416 (422)
Q Consensus 413 ~~~~ 416 (422)
++++
T Consensus 380 ~~l~ 383 (385)
T 1b5p_A 380 RVLG 383 (385)
T ss_dssp GGC-
T ss_pred HHHh
Confidence 7764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=382.98 Aligned_cols=383 Identities=20% Similarity=0.315 Sum_probs=321.7
Q ss_pred CCCcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCC
Q 014603 9 GNQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSST 86 (422)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~ 86 (422)
...|.+.+++|+.....+.++.+++... ++++|+|+.|.|+. .+.+++.+.+++.+.+... ....|++.
T Consensus 47 ~~~~~~~~s~~~~~~~~s~~~~~~~~~~-------~~~~i~l~~g~p~~--~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~ 117 (448)
T 3aow_A 47 LGDVERFFSKKALEMRASEVRELLKLVE-------TSDIISLAGGLPNP--KTFPKEIIRDILVEIMEKYADKALQYGTT 117 (448)
T ss_dssp TSCGGGGCCHHHHHCCCCHHHHHHHHHH-------TSSSEECCCCCCCG--GGSCHHHHHHHHHHHHHHSHHHHHSCCCT
T ss_pred ccchHHHhhHHHhcCCCcHHHHHHHhcc-------CCCcEeCCCCCCCc--hhCCHHHHHHHHHHHHHhhhHHHhCCCCC
Confidence 3568888999999999999999886432 46799999999762 3456789999998887653 13478888
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (422)
.|.+++|+++++++.+.+|.+ ++++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.+++
T Consensus 118 ~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 196 (448)
T 3aow_A 118 KGFTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE 196 (448)
T ss_dssp TCCHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC
Confidence 899999999999997666655 7889999999999999999999999999999999999999999999999999988642
Q ss_pred CCcccCHHHHHHhhc----C--CceEE-EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc
Q 014603 167 KGWEVDLDAVEALAD----E--NTVAL-VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG 239 (422)
Q Consensus 167 ~~~~~d~~~l~~~~~----~--~~~~i-~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~ 239 (422)
++|++.|++.++ + +++++ ++++|+||||.++|.+++++|+++|+++|++||+||+|+.+.+++....++.
T Consensus 197 ---g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~ 273 (448)
T 3aow_A 197 ---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIK 273 (448)
T ss_dssp ---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTG
T ss_pred ---CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHH
Confidence 489999999887 5 67887 4679999999999999999999999999999999999999988776556666
Q ss_pred ccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHH
Q 014603 240 VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSK 317 (422)
Q Consensus 240 ~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~ 317 (422)
.++..++++++.||||.|+ +|+|+||++++ +++++++..... .+.+++.+.|.++.++|+... +.++++
T Consensus 274 ~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~--------~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~ 344 (448)
T 3aow_A 274 ALDNEGRVIYLGTFSKILA-PGFRIGWMVGD--------PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPE 344 (448)
T ss_dssp GGCTTSCEEEEEESTTTTC-GGGCCEEEEEC--------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hcCCCCCEEEEccchhhcc-ccccEEEEEeC--------HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666667899999999987 99999999996 468888776553 345678899999999998642 577888
Q ss_pred HHHHHHHHHHHHHHHhhc-CC-CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CC
Q 014603 318 ITDILRETADICCDRLKE-IP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KD 391 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~ 391 (422)
.++.++++++.+.+.|++ +| ++. +..|.+|+|+|++++.. .+..++...++++ ||.+.||..|+. .+
T Consensus 345 ~~~~~~~~~~~l~~~L~~~~~~g~~-~~~p~~g~~~~v~~~~~-----~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~ 417 (448)
T 3aow_A 345 IRKFYKPRRDAMLEALEEFMPEGVK-WTKPEGGMFIWVTLPDG-----IDSKKMLERAIKK-GVAYVPGEAFYAHRDVKN 417 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCE-ECCCSBSSEEEEECSTT-----CCHHHHHHHHHHT-TEECEEGGGGSTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeE-EeCCCccEEEEEEcCCC-----CCHHHHHHHHHHC-CcEEEcchhhcCCCCCCC
Confidence 899999999999999987 57 576 44788899999999742 2567777777655 999999988743 57
Q ss_pred eEEEEecc-ChHHHHHHHHHHHHHHHHhcc
Q 014603 392 WLRITFAV-EPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 392 ~iRis~~~-~~~~l~~~~~~l~~~~~~~~~ 420 (422)
++|++++. +++++++++++|.++++++.+
T Consensus 418 ~iRls~~~~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 418 TMRLNFTYVDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp EEEEECSSSCTHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999984 789999999999999988754
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-49 Score=373.50 Aligned_cols=382 Identities=21% Similarity=0.379 Sum_probs=321.5
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
+++|+.....+.++.+.....+.. .+++++|||+.|.+. ++.++.+.+++.+.+... ...|++..+..++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~ 75 (388)
T 1j32_A 3 LAARVESVSPSMTLIIDAKAKAMK--AEGIDVCSFSAGEPD----FNTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREA 75 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHH--TTTCCCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHH
T ss_pred hhhHhHhCCccHHHHHHHHHHHHH--hcCCCEEECCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHH
Confidence 577888888888888876555432 247889999999865 567889999999988653 3578888889999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++.+.+|..+++++|++|+|++++++.++++++++||+|++++|+|+++...++..|.+++.++.++++++.+|++.
T Consensus 76 la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 155 (388)
T 1j32_A 76 IAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQ 155 (388)
T ss_dssp HHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHH
T ss_pred HHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHH
Confidence 99999887777778899999999999999999999999999999999999999999999999999988654467789999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEecC
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSI 253 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~ 253 (422)
|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+|++|+.+.+++....++..+.. .++++++.|+
T Consensus 156 l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 235 (388)
T 1j32_A 156 IRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGF 235 (388)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEES
T ss_pred HHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeec
Confidence 99999888999999999999999999999999999999999999999999998887655445555443 3467999999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
||.++++|+|+||++++ +++++.+..... .+.+++.+.+.++.++|+.. +.++++.+++++++++.+.+.
T Consensus 236 sK~~~~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~ 306 (388)
T 1j32_A 236 AKTYAMTGWRVGFLAGP--------VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDA 306 (388)
T ss_dssp TTTTTCTTTCCEEEECC--------HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCcccceEEEEeC--------HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 99998899999999986 467777776553 33567788898888888743 467888899999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
|+++|++. +..|.+++++|+.++.. + .+..++...+++++||.+.||..|+.++++|++++++++++++++++|.
T Consensus 307 L~~~~g~~-~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~ 381 (388)
T 1j32_A 307 LNAMPGLE-CPKPDGAFYMFPSIAKT---G-RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLE 381 (388)
T ss_dssp HHTCTTCB-CCCCCBTTEECCBCGGG---T-CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHH
T ss_pred HhhCCCCc-ccCCCeeEEEEEecCCC---C-CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHH
Confidence 99988887 44677788888877531 1 2567777777666799999998887789999999999999999999999
Q ss_pred HHHHHh
Q 014603 413 AFYDRH 418 (422)
Q Consensus 413 ~~~~~~ 418 (422)
++++++
T Consensus 382 ~~l~~~ 387 (388)
T 1j32_A 382 KFLHGI 387 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=375.81 Aligned_cols=379 Identities=20% Similarity=0.341 Sum_probs=311.4
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
+++ |+....++.++.+++...+.. .+++++|||+.|.+. ++++|.+.+++.+++.+. ...|++..|.+++|+
T Consensus 4 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~ 75 (391)
T 3h14_A 4 KNS-SRSAVDPFIVMDVMEAARRAE--EAGRRIIHMEVGQPG----TGAPRGAVEALAKSLETD-ALGYTVALGLPALRQ 75 (391)
T ss_dssp CCC-STTCCCCCTTHHHHHHHHHHH--HTTCCCEECCCSSCS----SCSCHHHHHHHHHHHC-----------CCHHHHH
T ss_pred hhh-hHhhcCcchHHHHHHHHHHHH--hcCCCeEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCChHHHHH
Confidence 445 778888888999887655432 257899999999965 577899999999988653 357888888999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
++++++++.+|.++++++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.++++++.+|++
T Consensus 76 ~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 155 (391)
T 3h14_A 76 RIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPA 155 (391)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHH
T ss_pred HHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHH
Confidence 99999998888788999999999999999999999999999999999999999999999999999999876666788999
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCc
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS 254 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s 254 (422)
.+++. +++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++... ++..+ .+++++++|+|
T Consensus 156 ~l~~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~--~~~~i~~~s~s 229 (391)
T 3h14_A 156 DFAGL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV-TALEL--TDECYVINSFS 229 (391)
T ss_dssp HHTTS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC-CGGGT--CSSSEEEEESS
T ss_pred HHHhc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc-Chhhc--CCCEEEEEech
Confidence 99876 78899999999999999999999999999999999999999999988876532 22222 35689999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.++++|+|+||++++ +++.+.+..... .+.+++.+.+.++.++++ ...++++.+++++++++.+.+.|
T Consensus 230 K~~g~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l 299 (391)
T 3h14_A 230 KYFSMTGWRVGWMVVP--------EDQVRVVERIAQNMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERL 299 (391)
T ss_dssp STTCCTTSCCEEEECC--------GGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCccceeEEEEeC--------HHHHHHHHHHHhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999986 457777776654 345778889999888887 36788999999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEeccChHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~l~~~~~~ 410 (422)
++++... ...|.+++++|+.++... .+..++...+++++||.+.||..|+. .+++||+++.+++++++++++
T Consensus 300 ~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~ 374 (391)
T 3h14_A 300 PKAGFTR-IAPPDGAFYVYADVSDLT----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDR 374 (391)
T ss_dssp HHHTCCC-BCCCCBTTEEEEECTTTC----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHH
T ss_pred HHcCCCc-ccCCCeeEEEEEecCccC----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHH
Confidence 9884333 446788899999886421 25677888877777999999998876 679999999888999999999
Q ss_pred HHHHHHHhcccC
Q 014603 411 MKAFYDRHAKKQ 422 (422)
Q Consensus 411 l~~~~~~~~~~~ 422 (422)
|++++++...+|
T Consensus 375 l~~~~~~~~~~~ 386 (391)
T 3h14_A 375 LEAFMQARGEGH 386 (391)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHhcccc
Confidence 999999876654
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=380.74 Aligned_cols=382 Identities=21% Similarity=0.385 Sum_probs=323.6
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC-CCCCCCCCCCHHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR-FNCYSSTVGILPA 92 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~y~~~~g~~~l 92 (422)
+.+++|+...+++.++.+.+.. .+.++|+|+.|.|. +++++.+.+++.+++.... ...|++..+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~l 72 (422)
T 3fvs_A 4 QLQARRLDGIDYNPWVEFVKLA-------SEHDVVNLGQGFPD----FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPL 72 (422)
T ss_dssp CCSCGGGTTCCCCHHHHHHHHH-------HTSCCEECCCSSCS----SCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHH
T ss_pred hhHHHHhhccCccHHHHHHHHh-------hcCCceEeCCCCCC----CCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHH
Confidence 4568899999999999888644 34689999999965 6788999999999987643 4589888899999
Q ss_pred HHHHHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC------
Q 014603 93 RRAIADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP------ 165 (422)
Q Consensus 93 r~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~------ 165 (422)
|+++++++++.+|..+++ ++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.+++++
T Consensus 73 r~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G 152 (422)
T 3fvs_A 73 TKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNG 152 (422)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSS
T ss_pred HHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccccccc
Confidence 999999999888877888 7999999999999999999999999999999999999999999999999999875
Q ss_pred ----CCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 166 ----AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 166 ----~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
..++.+|++.+++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..+
T Consensus 153 ~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 232 (422)
T 3fvs_A 153 ELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASL 232 (422)
T ss_dssp SCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred ccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhc
Confidence 2356789999999998899999999999999999999999999999999999999999999998887666666655
Q ss_pred CC-CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhh------chHH
Q 014603 242 GS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEK------TEEE 313 (422)
Q Consensus 242 ~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~------~~~~ 313 (422)
.. .++++++.|+||.|+++|+|+||++++ +++++.+..... ...+++++.+.++.++++. ..+.
T Consensus 233 ~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 304 (422)
T 3fvs_A 233 PGMWERTLTIGSAGKTFSATGWKVGWVLGP--------DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSS 304 (422)
T ss_dssp TTTGGGEEEEEEHHHHHTCGGGCCEEEECC--------HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTC
T ss_pred ccccCcEEEEecchhccCCccceEEEEEeC--------HHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHH
Confidence 43 357899999999998999999999986 467777766553 3457788999999998874 1246
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCC---------HHHHHHHHHHhcCeEEecC
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS---------DMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g 384 (422)
++++.+++++++++.+.+.|+++ ++. +..|.+++|+|+.++..... ..+ ..++...+++++||.+.||
T Consensus 305 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g 381 (422)
T 3fvs_A 305 YFVQFPQAMQRCRDHMIRSLQSV-GLK-PIIPQGSYFLITDISDFKRK-MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPV 381 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TCE-EEBCSBSSEEEEECHHHHHH-CCCCCCCTTCCHHHHHHHHHHHHHCEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCCeeeEEEEechhhccc-ccccccccccccHHHHHHHHHHhcCEEEeCc
Confidence 78889999999999999999998 776 44788899999988642110 001 4577777788889999999
Q ss_pred CCCCC-------CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 385 ITVGL-------KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 385 ~~~~~-------~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
..|+. .+++||+++.++++|++++++|++++++
T Consensus 382 ~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 382 SIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp GGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 98853 6899999999999999999999998864
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=372.24 Aligned_cols=382 Identities=21% Similarity=0.353 Sum_probs=313.8
Q ss_pred ccccHHHhhc--cCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC---CCCCCCCCC
Q 014603 14 FKANEELKTA--SGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR---FNCYSSTVG 88 (422)
Q Consensus 14 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~y~~~~g 88 (422)
+.+++|+.+. .++.+++++....+......+.++|||+.|.|. +++++.+.+++.+.+.+.. ...|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g 77 (398)
T 3ele_A 2 MVVNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPS----IPAPQIVNDTIKELVTDYDSVALHGYTSAQG 77 (398)
T ss_dssp CSSCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCC----SCCCHHHHHHHHHHHHHSCHHHHHSCCCTTC
T ss_pred cchhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCC----CCCCHHHHHHHHHHHhcCCccccCCcCCCCC
Confidence 4578899998 688999998766655444456789999999755 5678999999999887632 357888889
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCC-CEEEecCCCccchHHHHhhCCCeEEEeeccCCC
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPG-ANILLPRPGFPYYEARATHSHLEVRHFDLLPAK 167 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~g-d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (422)
.+++|+++++++.+.+|.++++++|++|+|++++++.++++++++| |+|+++.|+|+++...++..|.+++.++.++ +
T Consensus 78 ~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~ 156 (398)
T 3ele_A 78 DVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-E 156 (398)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-T
T ss_pred cHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-c
Confidence 9999999999999888888899999999999999999999999999 9999999999999999999999999999864 3
Q ss_pred CcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH------cCcEEEEcccccccccCCCCCCCcccc
Q 014603 168 GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK------LGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 168 ~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~------~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
++.+|++.|++.++++++++++++|+||||.+++.+++++|+++|++ +|+++|+||+|+.+.+++.......
T Consensus 157 ~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~-- 234 (398)
T 3ele_A 157 HFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVT-- 234 (398)
T ss_dssp TSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGG--
T ss_pred CCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChH--
Confidence 67899999999998899999999999999999999999999999999 9999999999999888764433322
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
...++++++.|+||.|+++|+|+||+++++.. ....++...+...... +.+++.+.+.++..+++... .+
T Consensus 235 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~ 306 (398)
T 3ele_A 235 KYYDNTLVCYSYSKSLSLPGERIGYVLVPDEV--YDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DI 306 (398)
T ss_dssp GTCSSEEEEEESTTTSSCTTTCCEEEECCTTS--TTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CH
T ss_pred hhcCCeEEEEehhhcCCCccceeEEEEEcchh--hhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HH
Confidence 22357899999999998899999999987421 1111234444333322 34566788888877776532 35
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEecc
Q 014603 320 DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV 399 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~ 399 (422)
++++++++.+.+.|+++ ++. +..|.+++++|+.++.. +..++...+ .++||.+.||..|+.++++||++++
T Consensus 307 ~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~------~~~~~~~~l-~~~gi~v~~g~~~~~~~~iRis~~~ 377 (398)
T 3ele_A 307 NAYKENRDLLYEGLTRI-GYH-CFKPDGAFYMFVKALED------DSNAFCEKA-KEEDVLIVAADGFGCPGWVRISYCV 377 (398)
T ss_dssp HHHHHHHHHHHHHHHHH-TCC-EECCSBSSEEEEECSSS------CHHHHHHHH-HTTTEECEESGGGTCTTEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHc-CCe-ecCCCeeEEEEEEcCCC------CHHHHHHHH-HHCCEEEeCccccCCCCeEEEEecC
Confidence 67788888888888887 676 44788888899988742 466666654 6779999999999888999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhc
Q 014603 400 EPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 400 ~~~~l~~~~~~l~~~~~~~~ 419 (422)
+++++++++++|++++++++
T Consensus 378 ~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 378 DREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=366.77 Aligned_cols=379 Identities=24% Similarity=0.459 Sum_probs=317.9
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
++++|+..++++.++.+.....+. +++|+|+.|.+. +++++.+.+++.+.+... ...|++..+..++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~ 70 (389)
T 1gd9_A 2 ALSDRLELVSASEIRKLFDIAAGM------KDVISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELRE 70 (389)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHTC------SSCEECCCCSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHH
T ss_pred chhhHhHhCChhHHHHHHHHHhhh------cCeEecCCCCCC----CCCCHHHHHHHHHHHhCC-CCCCCCCCCcHHHHH
Confidence 457789999999999988755432 578999999865 467899999999988764 347888778999999
Q ss_pred HHHHHHhhcCCCCCCCCC-EEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 95 AIADYLNRDLPYKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~-i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
++++++.+.+|..+++++ |++|+|++++++.++++++++||+|++++|+|+++...++..|.+++.++.++++++.+|+
T Consensus 71 ~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 150 (389)
T 1gd9_A 71 AIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNV 150 (389)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCH
T ss_pred HHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCH
Confidence 999999877676678889 9999999999999999999999999999999999999999999999999986544677899
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEec
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGS 252 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s 252 (422)
+.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..+.. .++++++.|
T Consensus 151 ~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 230 (389)
T 1gd9_A 151 DELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNG 230 (389)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEE
T ss_pred HHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEec
Confidence 9999999888899999999999999999999999999999999999999999998876653344444432 356799999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICC 330 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 330 (422)
+||.++++|+|+||++++ +++++++..... .+.+++.+.+.++.++|+... +.++++.+++++++++.+.
T Consensus 231 ~sK~~~~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 302 (389)
T 1gd9_A 231 FSKTFAMTGWRLGFVAAP--------SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW 302 (389)
T ss_dssp STTTTTCGGGCCEEEECC--------HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCcccceEEEEEC--------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence 999998899999999986 467787776553 345778899999999998532 2378889999999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGL 408 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~ 408 (422)
+.|+++ ++. +..|.+++++|+.++.. + .+..++...+++++||.+.||..|+. .+++||+++.+++++++++
T Consensus 303 ~~L~~~-g~~-~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l 376 (389)
T 1gd9_A 303 KRLNEM-GLP-TVKPKGAFYIFPRIRDT---G-LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAM 376 (389)
T ss_dssp HHHHHT-TCC-CCCCCBTTEECCBCGGG---T-CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred HHHHHc-CCe-ecCCCeeeEEEEeccCC---C-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHH
Confidence 999998 777 44677788899888631 1 15667777776578999999988764 6799999998899999999
Q ss_pred HHHHHHHHHh
Q 014603 409 GRMKAFYDRH 418 (422)
Q Consensus 409 ~~l~~~~~~~ 418 (422)
++|.+++++.
T Consensus 377 ~~l~~~~~~~ 386 (389)
T 1gd9_A 377 DRMERVLKER 386 (389)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-48 Score=369.81 Aligned_cols=385 Identities=20% Similarity=0.322 Sum_probs=303.8
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.++..++.+.++.+.....+. . .++.++|||+.|.+. +++++.+.+++.+++.......|++..+..++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~idl~~g~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAA-R-RRGEDIIDLSMGNPD----GPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRA 83 (412)
T ss_dssp -----------CHHHHHHHHHHH-H-HTTCCCEECSSCCCC----SCCCHHHHHHHHHTC---------CTTCCHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHH-h-hcCCCEEecCCCCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Confidence 56677777777787776544322 1 257889999999864 46789999999998865434578877889999999
Q ss_pred HHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 96 IADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 96 ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
+++++.+.+|..+++ ++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.++++++.+|++
T Consensus 84 ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 163 (412)
T 2x5d_A 84 ISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELE 163 (412)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHH
Confidence 999998776766777 7999999999999999999999999999999999999999999999999999875446668899
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecC
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSI 253 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~ 253 (422)
.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.++|....++..+.. .++++++.|+
T Consensus 164 ~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~ 243 (412)
T 2x5d_A 164 RAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTL 243 (412)
T ss_dssp HHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEEC
T ss_pred HHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecC
Confidence 999998888899999999999999999999999999999999999999999998886654445555532 3568999999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
||.|+++|+|+||++++ +++++.+..... .+.+++.+.+.++.++|+.. +.++++.+++++++++.+.+.
T Consensus 244 sK~~~~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~ 314 (412)
T 2x5d_A 244 SKSYNMAGWRIGFMVGN--------PELVSALARIKSYHDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKG 314 (412)
T ss_dssp C-CCSCTTSCCEEEEEC--------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcccceEEEEcC--------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 99998899999999985 567887776553 34577889999999999753 367888999999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~ 410 (422)
|+++ ++. +..+.+|+|+|+.++... .. .+..++...+++++||.+.||..|+. .+++||+++.+++++++++++
T Consensus 315 L~~~-g~~-~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~ 390 (412)
T 2x5d_A 315 LREA-GWM-VENPKASMYVWAKIPEPY-AH-LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRG 390 (412)
T ss_dssp HHHH-TCC-CCCCSBSSEEEEECCTTT-GG-GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHH
T ss_pred HHHC-CCE-ecCCCeeeEEEEEcCCcc-CC-CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHH
Confidence 9987 777 446777889999886321 00 13567777776767999999988864 679999999889999999999
Q ss_pred HHHHHHHhc
Q 014603 411 MKAFYDRHA 419 (422)
Q Consensus 411 l~~~~~~~~ 419 (422)
|.+++++..
T Consensus 391 l~~~l~~~~ 399 (412)
T 2x5d_A 391 IKAMFRADG 399 (412)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 999998754
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-48 Score=367.32 Aligned_cols=372 Identities=21% Similarity=0.352 Sum_probs=312.8
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++++...+++.++.+...... ....+++++|||+.|++. ++.++.+.+++.+.+.. ...|++..|.+++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~~~g~~~lr~~l 75 (396)
T 3jtx_A 3 NTLLKQLKPYPFARLHEAMQG-ISAPEGMEAVPLHIGEPK----HPTPKVITDALTASLHE--LEKYPLTAGLPELRQAC 75 (396)
T ss_dssp HHHHHHCCSCHHHHHHHHTTT-CCCCTTCCCEECSCCSCC----SCCCHHHHHHHHHTGGG--GGSCCCTTCCHHHHHHH
T ss_pred hhhhccCCCChHHHHHHHHHh-hhhccCCCeEEeCCcCCC----CCCCHHHHHHHHHHhhh--ccCCCCCCCcHHHHHHH
Confidence 457788888888888764443 333468899999999955 67889999999998753 45798888899999999
Q ss_pred HHHHhhcCCCC-CCCC-CEEEecCHHHHHHHHHHHhcCCC-----CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCc
Q 014603 97 ADYLNRDLPYK-LSPD-DVYLTLGCTQAIEVILTVLARPG-----ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGW 169 (422)
Q Consensus 97 a~~l~~~~~~~-~~~~-~i~~~~g~~~a~~~~~~~l~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (422)
++++.+.+|.. ++++ +|++|+|++++++.++++++++| |+|+++.|+|+++...++..|.+++.+++ +.+++
T Consensus 76 a~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~ 154 (396)
T 3jtx_A 76 ANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSF 154 (396)
T ss_dssp HHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTC
T ss_pred HHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCC
Confidence 99999888766 7788 99999999999999999999996 79999999999999999999999999998 44567
Q ss_pred ccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccc----cC-CC
Q 014603 170 EVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV----FG-SI 244 (422)
Q Consensus 170 ~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~----~~-~~ 244 (422)
.+|++.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++..+..... +. ..
T Consensus 155 ~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (396)
T 3jtx_A 155 NPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSR 234 (396)
T ss_dssp CCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCC
T ss_pred ccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhccccc
Confidence 78999999988888999999999999999999999999999999999999999999998887633222211 11 23
Q ss_pred CCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 323 (422)
++++++.|+||.|+++|+|+||++++ +++++.+..... .+.+++.+.+.++.++++. +.++.+.+++++
T Consensus 235 ~~~i~~~s~sK~~~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~ 304 (396)
T 3jtx_A 235 QKLLMFTSLSKRSNVPGLRSGFVAGD--------AELLKNFLLYRTYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQ 304 (396)
T ss_dssp TTEEEEEESTTTSSCGGGCCEEEEEC--------HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred CcEEEEeccccccCCcccceEEEEeC--------HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 56899999999989999999999885 578888877654 3457888999999999975 467888999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--------CCeEEE
Q 014603 324 ETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRI 395 (422)
Q Consensus 324 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--------~~~iRi 395 (422)
++++.+.+.|+++ +. +..|.+++|+|+.++.. +..++...+++++||.+.||..|+. .+++||
T Consensus 305 ~~~~~l~~~l~~~--~~-~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRi 375 (396)
T 3jtx_A 305 EKFERVIPILQQV--FD-VKLPDASFYIWLKVPDG------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRI 375 (396)
T ss_dssp HHHHHHHHHHTTT--SC-CCCCSSSSEEEEECTTS------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEE
T ss_pred HHHHHHHHHHHhc--CC-ccCCCeeEEEEEECCCC------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEE
Confidence 9999999999886 33 33678899999998752 5677888887778999999998864 579999
Q ss_pred EeccChHHHHHHHHHHHHHH
Q 014603 396 TFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 396 s~~~~~~~l~~~~~~l~~~~ 415 (422)
+++.+++++++++++|.+++
T Consensus 376 s~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 376 ALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp ECCSCHHHHHHHHHHHHHHC
T ss_pred EEcCCHHHHHHHHHHHHHHh
Confidence 99989999999999998864
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=362.51 Aligned_cols=372 Identities=24% Similarity=0.406 Sum_probs=313.7
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
.+.|+..++.+.++.+.....+... .++++|+|+.|.+. ++.++.+.+++.+.+... ...|++..+..++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ 86 (389)
T 1o4s_A 14 VSRRISEIPISKTMELDAKAKALIK--KGEDVINLTAGEPD----FPTPEPVVEEAVRFLQKG-EVKYTDPRGIYELREG 86 (389)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHH--TTCCCEECCCSSCS----SCCCHHHHHHHHHHHTTC-CCCCCCTTCCHHHHHH
T ss_pred HHHHHhhcCccHHHHHHHHHHHHHh--cCCCEEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHH
Confidence 4668999999999998876655432 47789999999864 456799999999988653 3478877789999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++.+.+|..+++++|++|+|++++++.++++++++||+|++++|+|+++...++..|.+++.++.++++++.+|++.
T Consensus 87 la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 166 (389)
T 1o4s_A 87 IAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEE 166 (389)
T ss_dssp HHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHH
T ss_pred HHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHH
Confidence 99999877676678899999999999999999999999999999999999999999999999999998654467789999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~s 254 (422)
|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++. ..++..+.. .++++++.|+|
T Consensus 167 l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~~~~i~~~s~s 245 (389)
T 1o4s_A 167 VEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE-FTSILDVSEGFDRIVYINGFS 245 (389)
T ss_dssp HHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC-CCCHHHHCSSSTTEEEEEEST
T ss_pred HHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCCHhhcCCCCCcEEEEeech
Confidence 9999988899999999999999999999999999999999999999999998877652 234444432 35679999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|+++++|+|+||++++ +++++.+..... .+.+++.+.+.++.++|+.. +++.+++++++++.+.+.|
T Consensus 246 K~~~~~G~r~G~l~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~l~~~L 313 (389)
T 1o4s_A 246 KSHSMTGWRVGYLISS--------EKVATAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVERL 313 (389)
T ss_dssp TTTTCGGGCCEEEECC--------HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCcccceEEEEeC--------HHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHH
Confidence 9998899999999986 467777776553 34567788899888888753 6778888999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
+++ ++. +..|.+++++|+.++ . +..++...+++++||.+.||..|+.++++||+++.+++++++++++|.+
T Consensus 314 ~~~-g~~-~~~~~~~~~~~~~~~-~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 314 KKM-GVK-FVEPEGAFYLFFKVR-G------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIED 384 (389)
T ss_dssp HHT-TCC-CCCCSBSSEEEEECS-S------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred Hhc-CCe-eecCCcceEEEEeCC-C------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHH
Confidence 988 777 446777889998886 1 5677777776577999999988877789999999899999999999998
Q ss_pred HHH
Q 014603 414 FYD 416 (422)
Q Consensus 414 ~~~ 416 (422)
+++
T Consensus 385 ~l~ 387 (389)
T 1o4s_A 385 FLN 387 (389)
T ss_dssp HHT
T ss_pred HHh
Confidence 874
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=366.71 Aligned_cols=389 Identities=26% Similarity=0.459 Sum_probs=312.5
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
.++.|+.++..+.++.+. ...+.. . +++++|+|+.|.+... .++.++.+.+++.+.+... ...|++..+.+++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~-~-~g~~~i~l~~~~~~~~-~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~ 85 (406)
T 1xi9_A 11 RASKRALSVEYAIRDVVL-PARELE-K-KGIKVIRLNIGDPVKF-DFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRK 85 (406)
T ss_dssp CCCHHHHTCCC--------CHHHHH-H-TTCCCEECCCCCGGGT-TCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHH
T ss_pred hHHHHHhcCChhHHHHHH-HHHHHH-H-cCCCEEEecCCCCCcC-CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHH
Confidence 467899999999888877 443332 2 4788999999997310 2567799999999988754 347888788999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
++++++.+.+|+++++++|++|+|+++|+..++++++++||+|+++.|+|+++...++..|.+++.++.++++++.+|++
T Consensus 86 ~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 165 (406)
T 1xi9_A 86 AIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDID 165 (406)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHH
T ss_pred HHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHH
Confidence 99999998777788889999999999999999999999999999999999999999999999999998865456778999
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC-eEEEecC
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSI 253 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~s~ 253 (422)
.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++ ...++..++ .++ +++++|+
T Consensus 166 ~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~-~~~~~i~~~s~ 243 (406)
T 1xi9_A 166 DIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLT-KDVPVIVMNGL 243 (406)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHC-SSSCEEEEEES
T ss_pred HHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCCCHHHcC-CCceEEEEecc
Confidence 9999998889999999999999999999999999999999999999999999987743 233444554 456 7999999
Q ss_pred ccccCCCCceeEEEE--eeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLV--TSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 254 sK~~~~~G~r~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
||.++++|+|+||++ .+++. . .++++.+........+++.+.+.++.++|+.. ..++++.+++++++++.+.+
T Consensus 244 sK~~~~~G~r~G~~~~~~~~~~--~--~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~ 318 (406)
T 1xi9_A 244 SKVYFATGWRLGYMYFVDPENK--L--SEVREAIDRLARIRLCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYK 318 (406)
T ss_dssp TTTTCCGGGCCEEEEEECTTCT--T--HHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccEEEEEEEecCchh--H--HHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999988999999998 64100 0 16777776655432577888999999999643 34588888999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~ 409 (422)
.|+++|++. +..|.+++++|+.++.. . + .+..++...+++++||.+.||..|+. .+++||++++++++++++++
T Consensus 319 ~L~~~~~~~-~~~~~~~~~~~~~~~~~-~-~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~ 394 (406)
T 1xi9_A 319 RLNEIPGIS-TTKPQGAFYIFPKIEVG-P-W-KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMD 394 (406)
T ss_dssp HHHTSTTEE-CCCCCBSSEECCEECSC-S-C-SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHH
T ss_pred HHHhCCCCe-eecCCeeEEEEEecCcc-C-C-CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHH
Confidence 999988887 44677788888877531 0 0 15667777776577999999988875 68999999988999999999
Q ss_pred HHHHHHHHhc
Q 014603 410 RMKAFYDRHA 419 (422)
Q Consensus 410 ~l~~~~~~~~ 419 (422)
+|.++++++.
T Consensus 395 ~l~~~l~~~~ 404 (406)
T 1xi9_A 395 RFEKFMKERL 404 (406)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=369.53 Aligned_cols=376 Identities=19% Similarity=0.311 Sum_probs=308.8
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++++..++++.++.+.+.... ..+.++|||+.|.+. ++.++.+.+++.+++.......|++..+.+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~----~~g~~~idl~~g~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 94 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE----HGPLPLINMAVGIPD----GPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAI 94 (404)
T ss_dssp CHHHHTSCCCTTC-------C----CCSSCCEECCCCSCS----SCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHh----cCCCCEEecCCcCCC----CCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Confidence 778888888877777654332 246779999999965 456789999999988543234688777899999999
Q ss_pred HHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++.+.+|..+++ ++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.++ +++.+|++.
T Consensus 95 a~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~ 173 (404)
T 2o1b_A 95 VDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSK 173 (404)
T ss_dssp HHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGG
T ss_pred HHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHH
Confidence 99998776766676 7999999999999999999999999999999999999999999999999998865 456789999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~s 254 (422)
|++.++++++++++++|+||||.++|.+++++|+++|+++|++||+||+|+.+.+++. ..++..+. ..++++++.|+|
T Consensus 174 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s~s 252 (404)
T 2o1b_A 174 VDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK-NPSILASENGKDVAIEIYSLS 252 (404)
T ss_dssp SCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC-CCCGGGSTTHHHHEEEEEEST
T ss_pred HHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCChhhcCCCCCCEEEEEecc
Confidence 9888877789999999999999999999999999999999999999999999887652 23333332 224679999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|+|+++|+|+||++++ +++++++..... ...+++.+.+.++.++|+.. +.++++.+++++++++.+.+.|
T Consensus 253 K~~g~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L 323 (404)
T 2o1b_A 253 KGYNMSGFRVGFAVGN--------KDMIQALKKYQTHTNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAML 323 (404)
T ss_dssp TTTTCGGGCCEEEEEC--------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCchhheEeEecC--------HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999985 567888876653 34578889999999999764 5788899999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l 411 (422)
+++ ++. +..+.+++|+|+.++.. .+..++...+++++||.+.||..|+. .+++||+++.+++++++++++|
T Consensus 324 ~~~-g~~-~~~~~~g~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l 396 (404)
T 2o1b_A 324 AKA-DLP-FVHAKGGIYVWLETPPG-----YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRL 396 (404)
T ss_dssp HHT-TCC-EECCCBSSEEEEECCTT-----CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHH
T ss_pred Hhc-CCe-ecCCCcceEEEEeCCCC-----CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 988 776 44677788999998632 24667777777677999999988864 6899999998889999999999
Q ss_pred HHHHHHh
Q 014603 412 KAFYDRH 418 (422)
Q Consensus 412 ~~~~~~~ 418 (422)
.++++++
T Consensus 397 ~~~l~~~ 403 (404)
T 2o1b_A 397 TELAYLY 403 (404)
T ss_dssp HGGGGGG
T ss_pred HHHHHhh
Confidence 9887664
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=371.07 Aligned_cols=375 Identities=20% Similarity=0.344 Sum_probs=314.4
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++|+...+++.++.+++.. .+.++|+|+.|.|+ +++++.+.+++.+++.......|++..+..++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l 70 (410)
T 3e2y_A 2 AKRIEGLDSNVWVEFTKLA-------ADPSVVNLGQGFPD----ISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKAL 70 (410)
T ss_dssp CGGGTTCCCCHHHHTTTTT-------TSTTSEECSSCCCC----SCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHH
T ss_pred chhhccCCccHHHHHHHHh-------cCCCeEEecCCCCC----CCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHH
Confidence 3567777777777766422 45789999999965 678899999999998765456898888899999999
Q ss_pred HHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC---------C
Q 014603 97 ADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP---------A 166 (422)
Q Consensus 97 a~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~ 166 (422)
++++++.+|..+++ ++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.+++++ .
T Consensus 71 a~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~ 150 (410)
T 3e2y_A 71 SCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTS 150 (410)
T ss_dssp HHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBG
T ss_pred HHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccc
Confidence 99999878877888 8999999999999999999999999999999999999999999999999988763 2
Q ss_pred CCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CC
Q 014603 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IV 245 (422)
Q Consensus 167 ~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~ 245 (422)
.++.+|++.+++.++++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++....++..+.. .+
T Consensus 151 ~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 230 (410)
T 3e2y_A 151 SDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWE 230 (410)
T ss_dssp GGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred cCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccC
Confidence 35668999999999888999999999999999999999999999999999999999999999888766556555542 35
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhh------chHHHHHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEK------TEEEFFSKI 318 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~------~~~~~~~~~ 318 (422)
+++++.|+||.|+++|+|+||++++ +++++.+..... ...+++++.+.++..+|+. ..+.++++.
T Consensus 231 ~~i~~~S~sK~~g~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (410)
T 3e2y_A 231 RTITIGSAGKTFSVTGWKLGWSIGP--------AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSL 302 (410)
T ss_dssp GEEEEEEHHHHSSCGGGCCEEEECC--------HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHH
T ss_pred eEEEEecchhhcCCCCceEEEEEEC--------HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 7899999999998899999999986 467787776653 3457788999999988873 124678889
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC-------CCHHHHHHHHHHhcCeEEecCCCCCC--
Q 014603 319 TDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI-------NSDMEFALKLAKEESVIVLPGITVGL-- 389 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~-- 389 (422)
+++++++++.+.+.|+++ ++. +..|.+++|+|+.++.... +. .++.+++..+++++||.+.||..|+.
T Consensus 303 ~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~ 379 (410)
T 3e2y_A 303 PKELEVKRDRMVRLLNSV-GLK-PIVPDGGYFIIADVSSLGA-DLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSK 379 (410)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCE-EEBCSBSSEEEEECGGGCC-CCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHC-CCe-ecCCCccEEEEEEchhhhc-ccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCC
Confidence 999999999999999998 776 4478889999998864211 00 01346777777888999999998863
Q ss_pred -----CCeEEEEeccChHHHHHHHHHHHH
Q 014603 390 -----KDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 390 -----~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
.+++||+++.++++|++++++|++
T Consensus 380 ~~~~~~~~iRis~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 380 SKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp THHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-48 Score=372.01 Aligned_cols=376 Identities=23% Similarity=0.366 Sum_probs=307.0
Q ss_pred ccCccHHHHHHHHHhhh--hccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHH
Q 014603 23 ASGITVRGVLNSLLENL--NKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100 (422)
Q Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l 100 (422)
.+++.++.+.+...... ....++++|||+.|.|. +++++.+.+++.+++.......|++..|.+++|+++++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l 108 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFS----YSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLY 108 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCS----SCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCC----CCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHH
Confidence 55566666664332110 01146789999999865 5678999999999987533458988889999999999999
Q ss_pred hhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC----------Ccc
Q 014603 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK----------GWE 170 (422)
Q Consensus 101 ~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~ 170 (422)
.+.+|.++++++|++|+|+++|+..++++++++||+|++++|+|+++...++..|.+++.++.++.+ ++.
T Consensus 109 ~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~ 188 (447)
T 3b46_A 109 SPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWT 188 (447)
T ss_dssp TTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSE
T ss_pred HHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcc
Confidence 8888877888999999999999999999999999999999999999999999999999999886542 578
Q ss_pred cCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc--CCCCCeE
Q 014603 171 VDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF--GSIVPVL 248 (422)
Q Consensus 171 ~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~--~~~~~~i 248 (422)
+|++.|++.++++++++++++|+||||.++|.+++++|+++|++||++||+||+|..+.+++ ...++..+ +..++++
T Consensus 189 ~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i 267 (447)
T 3b46_A 189 IDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTL 267 (447)
T ss_dssp ECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEE
T ss_pred cCHHHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEE
Confidence 99999999998889999999999999999999999999999999999999999999988876 22344443 1235689
Q ss_pred EEecCccccCCCCceeEEEEe-eCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVT-SDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRET 325 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~ 325 (422)
++.|+||.|+++|+|+||+++ + +++++.+.... ....+++.+.|.++.++|+... +.++++.+++++++
T Consensus 268 ~i~S~sK~~~~~G~riG~~~~~~--------~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~ 339 (447)
T 3b46_A 268 TVGSAGKSFAATGWRIGWVLSLN--------AELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINK 339 (447)
T ss_dssp EEEEHHHHTTCTTSCCEEEECSC--------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEecCchhcCCcchhhEEEEeCC--------HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHH
Confidence 999999999889999999998 5 56778777654 3345778889999988987643 56788899999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC----------CCCHHHHHHHHHHhcCeEEecCCCCCC------
Q 014603 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG----------INSDMEFALKLAKEESVIVLPGITVGL------ 389 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~gi~v~~g~~~~~------ 389 (422)
++.+.+.|+++ ++. +..|.+|+|+|+.++....+. ..++.++..++++++||.+.||..|+.
T Consensus 340 ~~~l~~~L~~~-g~~-~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~ 417 (447)
T 3b46_A 340 FKIFTSIFDEL-GLP-YTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKA 417 (447)
T ss_dssp HHHHHHHHHHH-TCC-EECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGG
T ss_pred HHHHHHHHHHC-CCe-ecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCC
Confidence 99999999987 777 446888999999986421000 113556777777778999999988753
Q ss_pred -CCeEEEEeccChHHHHHHHHHHHH
Q 014603 390 -KDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 390 -~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
.+++|++++.++++|++++++|++
T Consensus 418 ~~~~iRls~~~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 418 AENLLRFAVCKDDAYLENAVERLKL 442 (447)
T ss_dssp GTTEEEEECCSCHHHHHHHHHHGGG
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 589999999889999999999887
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=363.52 Aligned_cols=377 Identities=24% Similarity=0.404 Sum_probs=310.6
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
+++|+..++.+.++.+.... ...++|||+.|.+. +++++.+.+++.+++... ...|++..+..++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~ 70 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSALA-------TRIGAVNLGQGFPD----EDGPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRA 70 (411)
T ss_dssp CCGGGGGGSSCHHHHHHHHH-------HTTTCEESSCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHH
T ss_pred hhhHhHhcCccHHHHHHHHh-------hcCCeeeccCcCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHH
Confidence 46678888877776666432 23568999999865 467899999999998763 4578888889999999
Q ss_pred HHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC-CCcccCH
Q 014603 96 IADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA-KGWEVDL 173 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~ 173 (422)
+++++.+.+|.+++++ +|++|+|+++|++.++++++++||+|+++.|+|+++...++..|.+++.++.+++ +++.+|+
T Consensus 71 la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 150 (411)
T 2o0r_A 71 IAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDA 150 (411)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCH
T ss_pred HHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCH
Confidence 9999988777777888 9999999999999999999999999999999999999999999999999987643 2467899
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEec
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGS 252 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s 252 (422)
+.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.++|....++..+.. .++++++.|
T Consensus 151 ~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s 230 (411)
T 2o0r_A 151 DALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISS 230 (411)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEE
T ss_pred HHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEee
Confidence 9999999888999999999999999999999999999999999999999999998887655445554432 356799999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
+||.++++|+|+||++++ +++++.+..... ...+++.+.+.++.++|+.. +.++++.+++++++++.+.+
T Consensus 231 ~sK~~~~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~ 301 (411)
T 2o0r_A 231 AAKMFNCTGWKIGWACGP--------AELIAGVRAAKQYLSYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAA 301 (411)
T ss_dssp HHHHTTCTTTCEEEEECC--------HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceEEEEeeC--------HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHH
Confidence 999998899999999985 467777766553 33466778888888888754 57788899999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC-C------------CCCeEEEEec
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-G------------LKDWLRITFA 398 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-~------------~~~~iRis~~ 398 (422)
.|+++ ++. +..|.+++++|+.++... ..+..++...+++++||.+.||..| . ..+++||+++
T Consensus 302 ~L~~~-g~~-~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~ 376 (411)
T 2o0r_A 302 GLTEI-GFA-VHDSYGTYFLCADPRPLG---YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC 376 (411)
T ss_dssp HHHHH-TCE-ECCCCBSSEEEEECGGGT---CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC
T ss_pred HHHHc-CCE-ecCCCeeEEEEEecCCCC---CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec
Confidence 99987 776 446777889999886420 0146677777776789999999877 2 2468999999
Q ss_pred cChHHHHHHHHHHHHHHHHh
Q 014603 399 VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+++++++++++|++++++.
T Consensus 377 ~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 377 KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp SCHHHHHHHHHHHGGGGC--
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 88999999999999877554
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=357.74 Aligned_cols=357 Identities=18% Similarity=0.242 Sum_probs=305.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.++++|||+.|++. +++++.+.+++.+++.+. ...|++. ..++++.+++++.+.+|.++++++|++|+|++++
T Consensus 25 ~g~~~i~~~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 25 LKEKELPMWIAEMD----FKIAPEIMASMEEKLKVA-AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp CCTTCEECCSSCCS----SCCCHHHHHHHHHHHTTC-CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred cCCCceeccccCCC----CCCCHHHHHHHHHHHhcC-cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 46789999999854 688999999999998764 3467664 6899999999999888777889999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC-CCCcccCHHHHHHhhc-CCceEEEEeCCCCCccccc
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKGWEVDLDAVEALAD-ENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~ 200 (422)
++.++.+++++||+|+++.|+|+++...++..|.+++.++.++ .+++.+|++.|++.++ ++++++++++|+||||.++
T Consensus 98 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~ 177 (391)
T 3dzz_A 98 ISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAW 177 (391)
T ss_dssp HHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCC
T ss_pred HHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCccc
Confidence 9999999999999999999999999999999999999998852 4456689999999997 6899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
|.+++++|+++|+++|+++|+||+|+.+.++|....++..+.. .++++++.|+||.++++|+|+||+++++
T Consensus 178 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~------- 250 (391)
T 3dzz_A 178 SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPN------- 250 (391)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCS-------
T ss_pred CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECC-------
Confidence 9999999999999999999999999998887766666666543 4578999999999988999999999864
Q ss_pred hhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEec
Q 014603 279 SGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKL 355 (422)
Q Consensus 279 ~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~ 355 (422)
+++.+.+..... ...+++++.+.++.++++. .+.++++.+++++++++.+.+.|++ +|++. +..|.+++++|+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~ 328 (391)
T 3dzz_A 251 PDLRARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVK-VLDSNASYLAWVDI 328 (391)
T ss_dssp HHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECCCCBSSEEEEEC
T ss_pred HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcE-EeccCceEEEEEeh
Confidence 467787776643 2347788899999888876 3577889999999999999999998 88888 44788888899988
Q ss_pred CcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 356 NYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+... .+..++...+++++||.+.||..|+. ++++||+++++++++++++++|.++++++.
T Consensus 329 ~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 329 SALG----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp GGGC----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTCC
T ss_pred hhcC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 7421 15677777776678999999998876 489999999999999999999999998764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=363.13 Aligned_cols=357 Identities=20% Similarity=0.281 Sum_probs=303.9
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQAIE 124 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~ 124 (422)
.+|||++|++. .++++|.+.+++.+++.+.....|++..+..++++.+++++.+.+|..+++ ++|++|+|++++++
T Consensus 40 ~~id~~~g~~~---~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~ 116 (407)
T 3nra_A 40 RPVDFSHGDVD---AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALF 116 (407)
T ss_dssp CCEETTSCCTT---TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred ceeeecCcCCC---CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence 48999999865 267889999999998875433468888899999999999998887777766 79999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC----CCCcccCHHHHHHhhcCCceEEEEeCCCCCccccc
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP----AKGWEVDLDAVEALADENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~ 200 (422)
.++.+++++||+|+++.|+|+++...++..|.+++.++.++ ++++.+|++.|++.++++++++++++|+||||.++
T Consensus 117 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~ 196 (407)
T 3nra_A 117 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVY 196 (407)
T ss_dssp HHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCC
T ss_pred HHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCccc
Confidence 99999999999999999999999999999999999999843 25677999999999988899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC--CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG--SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~--~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
|.+++++|+++|++||+++|+||+|+.+.+++....++..++ ..++++++.|+||.|+++|+|+||++++
T Consensus 197 ~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-------- 268 (407)
T 3nra_A 197 SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-------- 268 (407)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC--------
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC--------
Confidence 999999999999999999999999999888877666665553 3456899999999998899999999985
Q ss_pred hhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc
Q 014603 279 SGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 279 ~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
+++++.+..... ...+++++.+.++.++|+. .+.++++.+++++++++.+.+.|++++++. +..|.+++++|+.++.
T Consensus 269 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~ 346 (407)
T 3nra_A 269 RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVF-ARTPQAGSYLFPRLPK 346 (407)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCB-CCCCSBSSEECCBCCC
T ss_pred HHHHHHHHHHHhhhccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCce-eccCCeeEEEEEeCCC
Confidence 578888776653 3446677888888888864 236678888899999999999999998888 4477888999988864
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.. .+..++...+++++||.+.||..|+. .+++||+++.++++|++++++|++++++++
T Consensus 347 ~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 347 LA----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp BS----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred CC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 21 25677777776777999999988874 689999999999999999999999998865
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=361.61 Aligned_cols=351 Identities=17% Similarity=0.274 Sum_probs=301.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+++++|||+.|++. ++++|.+.+++.+++.+. ...|++ .+ .++|+++++++++.++..+++++|++|+|++++
T Consensus 21 ~g~~~idl~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a 93 (377)
T 3fdb_A 21 YGQGVLPLWVAESD----FSTCPAVLQAITDAVQRE-AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRG 93 (377)
T ss_dssp SCTTSEECCSSCCC----SCCCHHHHHHHHHHHHTT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred cCCCeeeecccCCC----CCCCHHHHHHHHHHHHcC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHH
Confidence 58899999999844 678899999999998764 457888 67 899999999999877777889999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
++.++++++++||+|+++.|+|+++...++..|.+++.++.++. +|++.|++.++++++++++++|+||||.++|.
T Consensus 94 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~ 169 (377)
T 3fdb_A 94 LYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAP 169 (377)
T ss_dssp HHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCH
T ss_pred HHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999987643 89999999998889999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCC-CCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGN-TPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
+++++|+++|+++|+++|+||+|+.+.+++ ....++..+...++++++.|+||.++++|+|+||+++++ +++
T Consensus 170 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-------~~~ 242 (377)
T 3fdb_A 170 EWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSN-------PSD 242 (377)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCS-------HHH
T ss_pred HHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCC-------HHH
Confidence 999999999999999999999999988877 555555554445678999999999989999999988753 567
Q ss_pred HHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCccc
Q 014603 282 VDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYSL 359 (422)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~ 359 (422)
++.+..... .+.+++++.+.++.++++.. +.++++.+++++++++.+.+.|++ +|++. +..|.+++++|+.++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~ 320 (377)
T 3fdb_A 243 AEHWQQLSPVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAK-ITPMQATYLMWIDFRDTT 320 (377)
T ss_dssp HHHHHHSCHHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCE-ECCCSBCSEEEEECTTSC
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCce-EecCCeeEEEEEECcccC
Confidence 787776553 34578889999999888754 577889999999999999999998 78888 447888888899887531
Q ss_pred ccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 360 LEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+.++...+++++||.+.||..|+. .+++||+++++++++++++++|+++++++
T Consensus 321 -----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 321 -----IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp -----CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred -----CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 1245667777777999999998875 68999999999999999999999998653
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=359.82 Aligned_cols=378 Identities=19% Similarity=0.247 Sum_probs=304.2
Q ss_pred CcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHH-------------HHHHHHHhhC
Q 014603 11 QWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVA-------------VDAIVHSVRS 77 (422)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v-------------~~a~~~~~~~ 77 (422)
+|...+++|+..++++.++.+.+...+. ++++|+|+.|.|+.. .+|. ..+ .++...
T Consensus 2 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~p~~~-~~p~-~~~~~~~~~~~~~~~~~~~~~~---- 70 (425)
T 2r2n_A 2 NYARFITAASAARNPSPIRTMTDILSRG-----PKSMISLAGGLPNPN-MFPF-KTAVITVENGKTIQFGEEMMKR---- 70 (425)
T ss_dssp CGGGGSCHHHHTCCCCSGGGHHHHHHHS-----CTTCEECCCCCCCGG-GCSE-EEEEEEETTSCCEEECHHHHHH----
T ss_pred chhHHHHHHHhcCCCchHHHHHHHhhcC-----CCCeEEcCCcCCCch-hCCH-HHHHHHHhhcccccccccchhh----
Confidence 3566789999999999999998755432 367899999998731 1121 110 111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-------CCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH
Q 014603 78 ARFNCYSSTVGILPARRAIADYLNRDLPYKLS-------PDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR 150 (422)
Q Consensus 78 ~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~ 150 (422)
...|.+..|.+++|+++++++.+.+|.... +++|++|+|++++++.++++++++||+|++++|+|+++...
T Consensus 71 --~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 71 --ALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp --HTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH
T ss_pred --hcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH
Confidence 237888899999999999999887776653 37999999999999999999999999999999999999999
Q ss_pred HhhCCCeEEEeeccCCCCcccCHHHHHHhhc------------CCceEEEE-eCCCCCcccccCHHHHHHHHHHHHHcCc
Q 014603 151 ATHSHLEVRHFDLLPAKGWEVDLDAVEALAD------------ENTVALVI-INPGNPCGNVYTYQHLQKIAETAKKLGI 217 (422)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~------------~~~~~i~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~ 217 (422)
++..|.+++.++.+. .++|++.|++.++ ++++++++ ++|+||||.++|.+++++|+++|+++|+
T Consensus 149 ~~~~g~~~~~v~~~~---~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~ 225 (425)
T 2r2n_A 149 LHPLGCNIINVASDE---SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF 225 (425)
T ss_dssp HGGGTCEEEEECEET---TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCEEEEeCcCC---CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 999999999998753 2589999999876 35677765 5889999999999999999999999999
Q ss_pred EEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcc
Q 014603 218 MVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPA 296 (422)
Q Consensus 218 ~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 296 (422)
+||+||+|+.+.|++....++..++.++++++++|+||+|+ +|+|+||++++ +++++.+..... ...+++
T Consensus 226 ~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~--------~~l~~~l~~~~~~~~~~~~ 296 (425)
T 2r2n_A 226 LIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGP--------KPLIERVILHIQVSTLHPS 296 (425)
T ss_dssp EEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEE--------HHHHHHHHHHHHTTTCSSC
T ss_pred EEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecC--------HHHHHHHHHHHHHhcCCCC
Confidence 99999999998887766566666666678999999999987 99999999997 467888876653 345788
Q ss_pred hHHHHHHHHHHhhch----HHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHH
Q 014603 297 TFIQGAVPQILEKTE----EEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371 (422)
Q Consensus 297 ~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (422)
.+.|.++.++|+... ..++++.+++++++++.+.+.|++ +|++..+..|.+|+|+|+.++.. .+..+++.
T Consensus 297 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~-----~~~~~~~~ 371 (425)
T 2r2n_A 297 TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGI-----NDVKELIE 371 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTC-----SCCHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCC-----CCHHHHHH
Confidence 899999999987521 466788889999999999999987 56763134688899999999742 13445434
Q ss_pred HHHHhcCeEEecCCCCCC-----CCeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 372 KLAKEESVIVLPGITVGL-----KDWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 372 ~l~~~~gi~v~~g~~~~~-----~~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
..+.++||.+.||..|+. .+++||+++ .+++++++++++|++++++.
T Consensus 372 ~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 372 EKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp THHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 455678999999998864 479999998 89999999999999998753
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-47 Score=358.39 Aligned_cols=349 Identities=22% Similarity=0.325 Sum_probs=291.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~ 121 (422)
++.++|||+.|.+. ++.+|.+.+++.+++.......|++..+..++|+++++++.+.+|..++++ +|++|+|+++
T Consensus 23 ~g~~~idl~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 23 RGVGLIDLSIGSTD----LPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp TTCCCEECSSCCCC----CCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred cCCCEEeccCCCCC----CCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 57889999999864 456899999999988654345787756789999999999987767666776 9999999999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccC
Q 014603 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 122 a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~ 201 (422)
+++.++++++++||+|+++.|+|+++...++..|.+++.++. .+++.+|++.+++.++++++++++++|+||||.++|
T Consensus 99 a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~ 176 (376)
T 2dou_A 99 GLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVAD 176 (376)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCC
T ss_pred HHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCC
Confidence 999999999999999999999999999999999999998887 356678999998888777899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.+++++|+++|+++|+++|+||+|+.+.+++.....+...+..++++++.|+||.|+++|+|+||++++ +++
T Consensus 177 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~--------~~~ 248 (376)
T 2dou_A 177 WGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS--------EEA 248 (376)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC--------HHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC--------HHH
Confidence 999999999999999999999999998876632222222233356899999999998899999999985 578
Q ss_pred HHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc
Q 014603 282 VDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360 (422)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (422)
++.+..... .+.+++.+.+.++.++|+.. +.++++.+++++++++.+.+.|+++ +. +..|.+++++|+.++..
T Consensus 249 ~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~-- 322 (376)
T 2dou_A 249 LARLERVKGVIDFNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV--LS-LLPPRATMYLWGRLPEG-- 322 (376)
T ss_dssp HHHHHHHHHHHCCCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT--SE-ECCCCBSSEEEEECCTT--
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh--cC-ccCCCeeEEEEEECCCC--
Confidence 888876654 34467889999999999763 5778889999999999999999987 55 43677788999998642
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
.+..++...++++ ||.+.||..|+. .+++||+++.+++++++++++|++++
T Consensus 323 ---~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 323 ---VDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp ---CCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred ---CCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 2466777777655 999999988864 68999999988899999999998764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-47 Score=358.01 Aligned_cols=370 Identities=24% Similarity=0.365 Sum_probs=304.6
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
++|+...+.+.++.+.... . ..++|+|+.|.++ +++++.+.+++.+++... ...|++..+..++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~------~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~l 76 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSALA-Q------QHQAINLSQGFPD----FDGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAI 76 (386)
T ss_dssp CCSCCCCCCCHHHHHHHHH-H------HTTCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHH
T ss_pred chhhhcCCccHHHHHHHHH-h------cCCeEEecCCCCC----CCCCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHH
Confidence 4455566655555544322 1 2568999999865 467899999999998753 45788878899999999
Q ss_pred HHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 97 ADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 97 a~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
++++.+.+|.+++++ +|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.+++ ++.+|++.
T Consensus 77 a~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~ 155 (386)
T 1u08_A 77 AQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQE 155 (386)
T ss_dssp HHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHH
T ss_pred HHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHH
Confidence 999988777777888 9999999999999999999999999999999999999999999999999988643 56799999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~s 254 (422)
|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.++|....++..+. ..++++++.|+|
T Consensus 156 l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~s 235 (386)
T 1u08_A 156 FAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFG 235 (386)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHH
T ss_pred HHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecch
Confidence 9999988899999999999999999999999999999999999999999999888765444444442 234679999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.|+++|+|+||++++ +++++.+..... ...+++.+.+.++.++|+.. +.++++.+++++++++.+.+.|
T Consensus 236 K~~~~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L 306 (386)
T 1u08_A 236 KTYHMTGWKVGYCVAP--------APISAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNAL 306 (386)
T ss_dssp HHTTCGGGCCEEEECC--------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHT
T ss_pred hhcCCcccceEEEEcC--------HHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999986 467777776553 34567788899988888754 5678889999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC----CCCeEEEEeccChHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----LKDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~~~~iRis~~~~~~~l~~~~~ 409 (422)
+++ ++. +..|.+|+++|+.++... ..+..++...+++++||.+.||..|. ..+++|++++.++++|+++++
T Consensus 307 ~~~-g~~-~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~ 381 (386)
T 1u08_A 307 NES-RLE-ILPCEGTYFLLVDYSAVS---TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAE 381 (386)
T ss_dssp TSS-SCE-ECCCCBSSEEEEECTTTC---CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHH
T ss_pred HHC-CCe-ecCCCceEEEEEecCCCC---CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHH
Confidence 987 777 446777899999886420 01466777777777899999998774 367999999988999999999
Q ss_pred HHHH
Q 014603 410 RMKA 413 (422)
Q Consensus 410 ~l~~ 413 (422)
+|++
T Consensus 382 ~l~~ 385 (386)
T 1u08_A 382 RLRQ 385 (386)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9864
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=350.24 Aligned_cols=364 Identities=24% Similarity=0.415 Sum_probs=305.8
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
++.|+..++.+.++.+.+...+.. ..++++|+|+.|.+. +++++.+.+++.+.+... ...|++..+.+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~ 74 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQKLE--SEGKKVIHLEIGEPD----FNTPKPIVDEGIKSLKEG-KTHYTDSRGILELREK 74 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHHHH--HTTCCCEECCCCSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHH
T ss_pred hhhhhhhccccHHHHHHHHHHHHH--hcCCCEEEccCCCCC----CCCCHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHH
Confidence 467889999999999887665432 137789999999965 456789999999988753 4578887889999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++++.+|..+++++|++|+|++++++.++++++++||+|++++|+|+++...++..|.+++.++ +|++.
T Consensus 75 la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~ 146 (370)
T 2z61_A 75 ISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVES 146 (370)
T ss_dssp HHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHH
T ss_pred HHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHH
Confidence 9999998888788899999999999999999999999999999999999999999999999988776 58899
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC-CCCCeEEEecCc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG-SIVPVLTLGSIS 254 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~s~s 254 (422)
|++.++++++++++++|+||||.+++.+ |.++|+++|+++|+||+|+.+.+++. ..++..+. ..++++++.|+|
T Consensus 147 l~~~l~~~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~i~~~s~s 221 (370)
T 2z61_A 147 LEEALSDKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFDENLEKTILINGFS 221 (370)
T ss_dssp HHHHCCSSEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTCTTCSSEEEEEEST
T ss_pred HHHhcccCceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHccCCCCcEEEEecCh
Confidence 9999988889999999999999999877 88999999999999999999887663 23444442 335689999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.++++|+|+||++++ +++++.+..... ...+++++.+.++.++|+...+.++++.+++++++++.+.+.|
T Consensus 222 K~~~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 293 (370)
T 2z61_A 222 KLYAMTGWRIGYVISN--------DEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYV 293 (370)
T ss_dssp TTTTCGGGCCEEEECC--------HHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCccceEEEEEEC--------HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999986 467777776553 3457888999998888874125678888999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l 411 (422)
+++ ++. +..|.+++++|+.++. +..++...+++++||.+.||..|+. .+++||+++++++++++++++|
T Consensus 294 ~~~-g~~-~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l 364 (370)
T 2z61_A 294 KDF-GWE-VNNPIGAYYVFPNIGE-------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERI 364 (370)
T ss_dssp HHT-TCB-CCCCCBTTEECCBCSS-------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHH
T ss_pred HHc-CCe-ecCCCcceEEEEecCC-------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHH
Confidence 988 777 4467778889988863 3567777776577999999988874 6899999999999999999999
Q ss_pred HHHHH
Q 014603 412 KAFYD 416 (422)
Q Consensus 412 ~~~~~ 416 (422)
.++++
T Consensus 365 ~~~l~ 369 (370)
T 2z61_A 365 KEFLN 369 (370)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98874
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-46 Score=360.03 Aligned_cols=385 Identities=16% Similarity=0.228 Sum_probs=307.7
Q ss_pred ccccHHHhhccCccH-HHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC----CCCCCCCCCCC
Q 014603 14 FKANEELKTASGITV-RGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS----ARFNCYSSTVG 88 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g 88 (422)
..++.++..+.+... +.+...........++.++|||++|+++ ++.+|.+.+++.+++.. .....|++..+
T Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g 112 (449)
T 3qgu_A 37 VQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTT----EPLPKYIADAMAKAAAGLATREGYSGYGAEQG 112 (449)
T ss_dssp CCCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCC----CCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTC
T ss_pred hhhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCC----CCCCHHHHHHHHHHHHhhccccCCCCCCCCCC
Confidence 345667777777544 4566555544444468899999999855 67889999999998873 33457888889
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCe----------E
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLE----------V 158 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~----------~ 158 (422)
.+++|+++++++. +|+++++++|++|+|+++++..+ .+++++||+|++++|+|+++...++..|.+ +
T Consensus 113 ~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~ 189 (449)
T 3qgu_A 113 QGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGI 189 (449)
T ss_dssp CHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTE
T ss_pred cHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCccccccccccee
Confidence 9999999999997 67778889999999999999998 888899999999999999999999999988 8
Q ss_pred EEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCc
Q 014603 159 RHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM 238 (422)
Q Consensus 159 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~ 238 (422)
+.+++++.+++..+++.+ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++....++
T Consensus 190 ~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~ 264 (449)
T 3qgu_A 190 EYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTI 264 (449)
T ss_dssp EEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSG
T ss_pred EEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCH
Confidence 889887655555555432 578899999999999999999999999999999999999999999998877655566
Q ss_pred cccCC-CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 239 GVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 239 ~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
..+.. .++++++.|+||.|+++|+|+||+++++.........+...+.... ..+++++++.+.++.++++.....+++
T Consensus 265 ~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 344 (449)
T 3qgu_A 265 YEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMN 344 (449)
T ss_dssp GGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred hhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHH
Confidence 55543 3567999999999999999999999864221000001122333333 233477889999999998864456788
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEE
Q 014603 317 KITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLR 394 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iR 394 (422)
+.+++++++++.+.+.|+++ ++. +..+.+++|+|+.++ . .++.+++..+++++||.+.||..|+. ++++|
T Consensus 345 ~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~-~-----~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iR 416 (449)
T 3qgu_A 345 AMIKFYKENAQILKTTFTEM-GFS-VYGGDDAPYIWVGFP-G-----KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVR 416 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCC-EEESSSSSEEEEECT-T-----SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCe-eeCCCCeeEEEEECC-C-----CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEE
Confidence 89999999999999999998 777 446778999999987 2 25778888888778999999998875 68999
Q ss_pred EEeccChHHHHHHHHHHHHHHHHh
Q 014603 395 ITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 395 is~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
|++..+++++++++++|++++++.
T Consensus 417 is~~~~~e~i~~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 417 ASAFGSRENILEAVRRFKEAYGKR 440 (449)
T ss_dssp EECCSCHHHHHHHHHHHHHHHC--
T ss_pred EEecCCHHHHHHHHHHHHHHHHhc
Confidence 999889999999999999988654
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=354.74 Aligned_cols=386 Identities=20% Similarity=0.321 Sum_probs=314.5
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCC
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGI 89 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~ 89 (422)
+.+.++.|+..+.++.++.+++...+. ...|.++|||+.|.+.. ...+++.+.+++.+++... ... |++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~idl~~g~~~~--~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~ 77 (407)
T 2zc0_A 3 YTKYLAGRANWIKGSALADVMKKASEL--QKKGVKLISLAAGDPDP--ELIPRAVLGEIAKEVLEKEPKSVM-YTPANGI 77 (407)
T ss_dssp GGGGSCGGGGGCCCCHHHHHHHHHHHH--HHSSCCCEECCSCCCCT--TTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCC
T ss_pred chhhhhhhhccCCchHHHHHHHhhhcc--cCCCCceEeCCCCCCCc--hhCCHHHHHHHHHHHHhhcccccc-CCCCCCC
Confidence 444577888888888888888755422 11356899999998762 2346789999999888653 234 8887889
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCc
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGW 169 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (422)
.++|+++++++.+.+|.++++++|++|+|+++|++.++++++++||+|+++.|+|+++...++..|.+++.++.+++
T Consensus 78 ~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~--- 154 (407)
T 2zc0_A 78 PELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND--- 154 (407)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---
T ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC---
Confidence 99999999999877776678899999999999999999999999999999999999999999999999999987542
Q ss_pred ccCHHHHHHhhc----C--CceEE-EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 170 EVDLDAVEALAD----E--NTVAL-VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 170 ~~d~~~l~~~~~----~--~~~~i-~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
++|++.|++.++ + +++++ ++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..++
T Consensus 155 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 234 (407)
T 2zc0_A 155 GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD 234 (407)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC
T ss_pred CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC
Confidence 389999999887 5 67776 4678999999999999999999999999999999999999888765545565665
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhch-H-HHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTE-E-EFFSKIT 319 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~ 319 (422)
..++++++.|+||+++ +|+|+||++++ +++++.+...... ..+++++.+.++..+++... + .++++.+
T Consensus 235 ~~~~~i~~~s~sK~~~-~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 305 (407)
T 2zc0_A 235 NEGRVIVAGTLSKVLG-TGFRIGWIIAE--------GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGAL 305 (407)
T ss_dssp SSCCEEEEEESTTTTC-TTSCCEEEECC--------HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHH
T ss_pred CCCCEEEEcccccccC-CCcceEEEecC--------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 5567899999999987 99999999985 4677877765532 34567889999998887642 3 5677888
Q ss_pred HHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEE
Q 014603 320 DILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLR 394 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iR 394 (422)
++++++++.+.+.|++ .|++. +..|.+++++|+.++.. .+..++...+.+++||.+.||..|.. .+++|
T Consensus 306 ~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iR 379 (407)
T 2zc0_A 306 LGYKEKRDIMLKALENHLPNAE-FTKPIAGMFVMFFLPEG-----ADGISFANELMEREGVVVVPGKPFYTDESGKNAIR 379 (407)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC-BCCCSBSSEEEEECSTT-----CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCE-EecCCCcEEEEEEcCCC-----CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEE
Confidence 8999999999999987 57776 44677889999998642 25677777776666999999988753 57999
Q ss_pred EEecc-ChHHHHHHHHHHHHHHHHhcc
Q 014603 395 ITFAV-EPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 395 is~~~-~~~~l~~~~~~l~~~~~~~~~ 420 (422)
|+++. +++++++++++|+++++++.+
T Consensus 380 is~~~~~~~~i~~~~~~l~~~l~~~~~ 406 (407)
T 2zc0_A 380 LNFSRPSKEEIPIGIKKLAKLYKEKFG 406 (407)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99985 789999999999999987654
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=355.06 Aligned_cols=379 Identities=23% Similarity=0.367 Sum_probs=313.6
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
.++.|+...+++.++.+...+.+.. .+++++|+|+.|.+. ++.++.+.+++ +++... ...|++..+..++|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~l~~~~~~----~~~~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~ 86 (409)
T 2gb3_A 15 VFSDRVLLTEESPIRKLVPFAEMAK--KRGVRIHHLNIGQPD----LKTPEVFFERI-YENKPE-VVYYSHSAGIWELRE 86 (409)
T ss_dssp -CCHHHHSCCCCTTGGGHHHHHHHH--HTTCEEEECSSCCCC----SCCCTHHHHHH-HHTCCS-SCCCCCTTCCHHHHH
T ss_pred HHHHHhhcCCccHHHHHHHHHHHHH--hcCCCEEeccCCCCC----CCCCHHHHHHH-HHHhcC-CCCCCCCCCcHHHHH
Confidence 4688999999999988887555432 247889999999964 45678999999 887653 357888788999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
++++++++.+|.++++++|++|+|+++|++.++++++++||+|+++.|+|+++...++..|.+++.++.++++++.+ ++
T Consensus 87 ~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~ 165 (409)
T 2gb3_A 87 AFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQ 165 (409)
T ss_dssp HHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CT
T ss_pred HHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HH
Confidence 99999998788778889999999999999999999999999999999999999999999999999998865344445 88
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCc-cccCCCCCeEEEecC
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM-GVFGSIVPVLTLGSI 253 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~s~ 253 (422)
.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++. ..++ ..+ .+++++++|+
T Consensus 166 ~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~--~~~~i~~~s~ 242 (409)
T 2gb3_A 166 NLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALSIE--SDKVVVIDSV 242 (409)
T ss_dssp TGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCGGGSC--CTTEEEEEES
T ss_pred HHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCccccC--CCCEEEEecc
Confidence 99998888899999999999999999999999999999999999999999999877653 2222 211 2457999999
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
||.++++|+|+||+++++ +++.+.+........+++++.+.++.++|+. ...++++.+++++++++.+.+.|
T Consensus 243 sK~~g~~G~r~G~~~~~~-------~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L 314 (409)
T 2gb3_A 243 SKKFSACGARVGCLITRN-------EELISHAMKLAQGRLAPPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKL 314 (409)
T ss_dssp TTTTTCGGGCCEEEECSC-------HHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCccceEEEEEECc-------HHHHHHHHHHHhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988999999999863 2677777665533216788899999999965 35678888999999999999999
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHh-----cCeEEecCCCCCC-----CCeEEEEeccChHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----KDWLRITFAVEPSA 403 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~v~~g~~~~~-----~~~iRis~~~~~~~ 403 (422)
+++ ++.++..|.+++++|+.++. .+..++...++++ +||.+.||..|+. .+++||++++++++
T Consensus 315 ~~~-g~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~ 387 (409)
T 2gb3_A 315 EEH-GLKRFTKPSGAFYITAELPV------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDL 387 (409)
T ss_dssp HHT-TCCCBCCCSBSSEEEEECSS------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHH
T ss_pred HHc-CceeeeCCCeeEEEEEEeCC------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHH
Confidence 988 77741467888999988862 1567777777665 5999999987753 67999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 014603 404 LEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 404 l~~~~~~l~~~~~~~~~ 420 (422)
+++++++|+++++++++
T Consensus 388 i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 388 LSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999988754
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-47 Score=364.57 Aligned_cols=382 Identities=21% Similarity=0.360 Sum_probs=309.1
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILP 91 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~ 91 (422)
+.+++|+...+.+.++.+.+.. ...++|||+.|.++ +++++.+.+++.+++... ....|++..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~ 81 (429)
T 1yiz_A 13 FDLPKRYQGSTKSVWVEYIQLA-------AQYKPLNLGQGFPD----YHAPKYALNALAAAANSPDPLANQYTRGFGHPR 81 (429)
T ss_dssp CCSSSSCCCCTTCHHHHHHHHH-------HHHCCEECCSSSCS----SCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHH
T ss_pred cchhHHhhhCCchHHHHHHHHh-------ccCCEEEecCCCCC----CCCCHHHHHHHHHHHhccccCccCCCCCCCcHH
Confidence 4455566666655444443321 13568999999865 467899999999988652 2347888778999
Q ss_pred HHHHHHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC---
Q 014603 92 ARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK--- 167 (422)
Q Consensus 92 lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 167 (422)
+|+++++++.+.+|.+++++ +|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.++++
T Consensus 82 l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 161 (429)
T 1yiz_A 82 LVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGG 161 (429)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSS
T ss_pred HHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccc
Confidence 99999999987767677888 99999999999999999999999999999999999999999999999999986542
Q ss_pred -----CcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 168 -----GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 168 -----~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
++.+|++.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..+.
T Consensus 162 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 241 (429)
T 1yiz_A 162 TISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLP 241 (429)
T ss_dssp SEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGST
T ss_pred cccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhcc
Confidence 567899999999988899999999999999999999999999999999999999999999888765544554443
Q ss_pred -CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhh-----ch-HHH
Q 014603 243 -SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEK-----TE-EEF 314 (422)
Q Consensus 243 -~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~-----~~-~~~ 314 (422)
..++++++.|+||.|+++|+|+||++++ +++++.+..... .+.+++++.+.++.++|+. .. +.+
T Consensus 242 ~~~~~~~~~~s~sK~~~~~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 313 (429)
T 1yiz_A 242 GMWERTITIGSAGKTFSLTGWKIGWAYGP--------EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECY 313 (429)
T ss_dssp TTGGGEEEEEEHHHHHTCGGGCCEEEESC--------HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSH
T ss_pred CCcCceEEEecchhccCCCCcceEEEEeC--------HHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHH
Confidence 3456899999999998899999999986 467777776543 3457788899999888876 31 467
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc-------cCCCCHHHHHHHHHHhcCeEEecCCCC
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-------EGINSDMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
+++.+++++++++.+.+.|+++ ++. +..|.+|+|+|++++.... .+..+..++...+++++||.+.||..|
T Consensus 314 ~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f 391 (429)
T 1yiz_A 314 FNSISGELMAKRDYMASFLAEV-GMN-PTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAF 391 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCE-EEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHh
Confidence 8889999999999999999987 666 4367778999999864200 000134567777776789999999877
Q ss_pred CC-------CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 388 GL-------KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 388 ~~-------~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
+. .+++||+++.++++|++++++|+++++
T Consensus 392 ~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 392 YSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG 427 (429)
T ss_dssp SCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSC
T ss_pred CCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhcc
Confidence 52 579999999999999999999998764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=354.97 Aligned_cols=356 Identities=15% Similarity=0.256 Sum_probs=298.4
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
+++|+|+.|++. +++++.+.+++.+++... ...|++. ..++|+++++++.+.+|.++++++|++|+|+++|++
T Consensus 31 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~ 103 (399)
T 1c7n_A 31 NEVVPLSVADME----FKNPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (399)
T ss_dssp TTCCCCCSSSCS----SCCCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CCceeeeecCCC----CCCCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence 579999999854 567899999999988653 3477764 899999999999876676678899999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC-CcccCHHHHHHhhc-CCceEEEEeCCCCCcccccCH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK-GWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~~ 202 (422)
.++++++++||+|+++.|+|+++...+...|.+++.++.++.+ ++.+|++.|++.++ ++++++++++|+||||.++|.
T Consensus 104 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 183 (399)
T 1c7n_A 104 NAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKK 183 (399)
T ss_dssp HHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCH
T ss_pred HHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCH
Confidence 9999999999999999999999999999999999988875332 46689999999887 678999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchh
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+++++|+++|+++|+++|+||+|+.+.+++....++..+.. .++++++.|+||.++++|+|+||+++++ ++
T Consensus 184 ~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-------~~ 256 (399)
T 1c7n_A 184 DELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN-------PD 256 (399)
T ss_dssp HHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC-------HH
T ss_pred HHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECC-------HH
Confidence 99999999999999999999999998887755555555543 3568999999999988999999999863 35
Q ss_pred HHHHHHhhhhhc--cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCc
Q 014603 281 IVDSIKSFLNIS--SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 281 ~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
+++++....... ++++++.+.++.++|+.. +.++++.+++++++++.+.+.|++ +|++. +..+.+++++|+.++.
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~ 334 (399)
T 1c7n_A 257 IRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIK-APLIEGTYLQWIDFRA 334 (399)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSB-CCCCSBSSEEEEECGG
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCe-EecCCceEEEEEEccc
Confidence 777777665432 367888999988888753 577888999999999999999998 88887 4467778888998864
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCCC--CCCeEEEEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITVG--LKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.. .+..++...+++++||.+.||..|+ .++++||+++.+++++++++++|.++++++.+
T Consensus 335 ~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 335 LK----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp GC----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred CC----CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence 21 1466777777657899999998886 36899999997789999999999999988754
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=363.88 Aligned_cols=370 Identities=21% Similarity=0.334 Sum_probs=298.8
Q ss_pred CceeecCCCCCCCCCCC-------------------------CcHHHHHHHHHHhhCC---CCCCCCCCCCCHHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFR-------------------------TASVAVDAIVHSVRSA---RFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~-------------------------~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia 97 (422)
.+|+.++|+|......| .|+.+.+++.+.+... ....|++..|.+++|++++
T Consensus 65 ~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~~~~~~~~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia 144 (500)
T 3tcm_A 65 EILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIA 144 (500)
T ss_dssp SCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGCTTHHHHSCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHH
T ss_pred HhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccCCCCcccCCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHH
Confidence 78999999875322211 3455666666666652 4568999999999999999
Q ss_pred HHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHH
Q 014603 98 DYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 176 (422)
+++.+..|.++++++|++|+|+++++..++.+++ ++||+|+++.|+|+++...++..|.+++.++++.+++|.+|++.|
T Consensus 145 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 224 (500)
T 3tcm_A 145 SGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDV 224 (500)
T ss_dssp HHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHH
T ss_pred HHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHH
Confidence 9999888888899999999999999999999998 899999999999999999999999999999998777889999999
Q ss_pred HHhhcC------CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCcc----cc---C
Q 014603 177 EALADE------NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMG----VF---G 242 (422)
Q Consensus 177 ~~~~~~------~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~----~~---~ 242 (422)
++.+++ +++++++++|+||||.++|.+++++|+++|+++|+++|+||+|..+.|++. ...++. .+ .
T Consensus 225 ~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~ 304 (500)
T 3tcm_A 225 KKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGE 304 (500)
T ss_dssp HHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSS
T ss_pred HHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhcccc
Confidence 998875 688999999999999999999999999999999999999999999888542 333432 22 2
Q ss_pred CCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhc---------hH
Q 014603 243 SIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKT---------EE 312 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~ 312 (422)
.+.++++++|+||.| +.+|+|+||+++.... +++++.+........+++.+.|.++..+++.. ..
T Consensus 305 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 379 (500)
T 3tcm_A 305 EDLPLVSYQSVSKGYYGECGKRGGYFEITGFS-----APVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYK 379 (500)
T ss_dssp SCCCEEEEEESSSTTTCCGGGCCEEEEEESCC-----TTHHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHH
T ss_pred CCeEEEEEecCCccCCCCCccceEEEEEeCCC-----HHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHH
Confidence 233579999999998 7899999999983211 46788887766656678889999998888631 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc-------ccCCCCHHHHHHHHHHhcCeEEecCC
Q 014603 313 EFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-------LEGINSDMEFALKLAKEESVIVLPGI 385 (422)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~gi~v~~g~ 385 (422)
.+.++.+++++++++.+.+.|+++|++. +..|.+++|+|+++..+. ..+..++..++..+++++||.+.||.
T Consensus 380 ~~~~~~~~~l~~~~~~l~~~L~~~~g~~-~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~ 458 (500)
T 3tcm_A 380 AEKDGILASLARRAKALEHAFNKLEGIT-CNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGS 458 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEE-CCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEEST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcE-EecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCc
Confidence 4567778889999999999999998988 448899999996553210 00111233345677788899999999
Q ss_pred CCCC---CCeEEEEeccChHHHHHHHHHHHHHHHHhccc
Q 014603 386 TVGL---KDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 386 ~~~~---~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
.|+. .+++|++++.+++++++++++|+++++++.++
T Consensus 459 ~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~~~ 497 (500)
T 3tcm_A 459 GFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSE 497 (500)
T ss_dssp TTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9975 45899999988899999999999999887543
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=356.18 Aligned_cols=369 Identities=14% Similarity=0.127 Sum_probs=288.8
Q ss_pred HHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCC-CCCCCCCCcHHHHHHHHHHh-hCCCCCCCCCCCCCHHHHHH
Q 014603 18 EELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDP-SAFPSFRTASVAVDAIVHSV-RSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~~v~~a~~~~~-~~~~~~~y~~~~g~~~lr~~ 95 (422)
+++...+++.++++...+++. ..+++|||+.|.+ +..+.+++++.+.+++. .+ .......|.+..|.+++|++
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~----~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~a 80 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKED----TCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTL 80 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTS----SCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHhcC----CCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHH
Confidence 378889999999999877654 3578999999974 22233567889998877 43 33445689999999999999
Q ss_pred HHHHHhhcCCCCCCCCC--EEEecCHHHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 96 IADYLNRDLPYKLSPDD--VYLTLGCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~--i~~~~g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
+++++.+..+..+++++ +++|+|+++|+..++.+++. + |+|++++|+|.+|...++..|.+++.+++..++++++
T Consensus 81 ia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 159 (405)
T 3k7y_A 81 TQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDI 159 (405)
T ss_dssp HHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEE
T ss_pred HHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCc
Confidence 99999766555566665 58999999999999999887 8 9999999999999999999999999999854456889
Q ss_pred CHHHHHHhhcC--CceEEEEeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC--CCCcccc-CCCC
Q 014603 172 DLDAVEALADE--NTVALVIINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP--FVPMGVF-GSIV 245 (422)
Q Consensus 172 d~~~l~~~~~~--~~~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~--~~~~~~~-~~~~ 245 (422)
|++.+++.+++ ++++++++.| |||||.+++.+++++|+++|+++|++||+||+|..+.+++.. ..++..+ ...+
T Consensus 160 d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 239 (405)
T 3k7y_A 160 NYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI 239 (405)
T ss_dssp CHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTC
T ss_pred CHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCC
Confidence 99999998753 4567777665 899999999999999999999999999999999998875421 1122222 2235
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH----hhh-hhccCcchHHHHHHHHHHhhch-----HHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK----SFL-NISSDPATFIQGAVPQILEKTE-----EEFF 315 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~ 315 (422)
++++++||||+|+++|+|+||+++..+. +++++++. ... ...++++.+.|.++..+|.+.. ..++
T Consensus 240 ~~i~~~S~SK~~~l~GlRiG~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l 314 (405)
T 3k7y_A 240 AFSVCQSFSKNMSLYGERAGALHIVCKN-----QEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKEL 314 (405)
T ss_dssp CEEEEEECTTTSCCTTTTEEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cEEEEeeCCccCCCccccceEEEEEeCC-----HHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7999999999999999999999753211 44554443 222 2334667788989888887631 2345
Q ss_pred HHHHHHHHHHHHHHHHHhh----cCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC
Q 014603 316 SKITDILRETADICCDRLK----EIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~----~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 388 (422)
.+.+++++++++.+.+.|+ +++ ++. +..|.+|+|+|+.++. +++.++ +++||.+.||.
T Consensus 315 ~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~-~~~p~gg~f~~~~l~~----------~~~~~L-~~~gV~v~p~~--- 379 (405)
T 3k7y_A 315 SQLSQRITNNRILFFNKLETYQKKYNLNYDWN-VYKKQRGLFSFVPLLA----------KIAEHL-KTHHIYIINNG--- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGG-GGSSCCSSEEECGGGG----------GGTTTT-TTTTEECCTTS---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCc-cccCCceEEEecCCCH----------HHHHHH-HHCCEeecCCC---
Confidence 6667789999999999999 762 256 4478999999987752 234556 78899999963
Q ss_pred CCCeEEEEec-cChHHHHHHHHHHHHHHHH
Q 014603 389 LKDWLRITFA-VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 389 ~~~~iRis~~-~~~~~l~~~~~~l~~~~~~ 417 (422)
|||++ .+++++++++++|.+++++
T Consensus 380 -----Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 -----RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp -----EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred -----eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 99998 7899999999999998864
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=360.34 Aligned_cols=377 Identities=19% Similarity=0.257 Sum_probs=308.1
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPAR 93 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr 93 (422)
+++++...+.+.++.+++.. .++++|||+.|.|+. ...+++.+.+++.+.+... ....|++..+.+++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~-------~~~~~idl~~g~~~~--~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr 91 (425)
T 1vp4_A 21 ISKIGQNMKSSIIREILKFA-------ADKDAISFGGGVPDP--ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLK 91 (425)
T ss_dssp CCHHHHTCCCCCHHHHTTTT-------TSTTCEECCCCSCCG--GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHH
T ss_pred hhhhhhcCCCcHHHHHHHhc-------cCCCceeCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHH
Confidence 46678888888787766422 356899999998652 2346789999999888652 134788878899999
Q ss_pred HHHHHHHhhcCCCC-CCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 94 RAIADYLNRDLPYK-LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 94 ~~ia~~l~~~~~~~-~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
+++++++.+.+|.. +++++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.+++ ++|
T Consensus 92 ~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d 168 (425)
T 1vp4_A 92 QQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMD 168 (425)
T ss_dssp HHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EEC
T ss_pred HHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCC
Confidence 99999997665655 77899999999999999999999999999999999999999999999999999988642 389
Q ss_pred HHHHHHhhcC--------CceEE-EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 173 LDAVEALADE--------NTVAL-VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 173 ~~~l~~~~~~--------~~~~i-~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
++.|++.+++ +++++ ++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..++.
T Consensus 169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 248 (425)
T 1vp4_A 169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG 248 (425)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC
T ss_pred HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC
Confidence 9999988765 67777 47899999999999999999999999999999999999998887665455555554
Q ss_pred CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhc-hHHHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKT-EEEFFSKITDI 321 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~ 321 (422)
.++++++.|+||.|+ +|+|+||++++ +++++.+..... .+.+++.+.|.++.++|+.. .+.++++.+++
T Consensus 249 ~~~~i~~~s~sK~~~-~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 319 (425)
T 1vp4_A 249 PERVVLLNTFSKVLA-PGLRIGMVAGS--------KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIEL 319 (425)
T ss_dssp TTTEEEEEESTTTTC-GGGCEEEEECC--------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHH
T ss_pred CCCEEEEeccccccc-cccceEEEeeC--------HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 567899999999998 99999999986 467777776543 33467889999999999864 25678888999
Q ss_pred HHHHHHHHHHHhhcC-C---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeE
Q 014603 322 LRETADICCDRLKEI-P---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWL 393 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~-~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~i 393 (422)
++++++.+.+.|++. | ++. +..|.+|+|+|+.++.. .+..++...+.++ ||.+.||..|+. .+++
T Consensus 320 ~~~~~~~l~~~L~~~~~~~~g~~-~~~~~~g~~~~~~~~~~-----~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~i 392 (425)
T 1vp4_A 320 YRRKRTVMLNALEEYFSDIPGVK-WVKSEGGLFIWLTLPEG-----FDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSM 392 (425)
T ss_dssp HHHHHHHHHHHHHHHSTTSTTCE-ECCCSBSSEEEEECCTT-----CCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEE
T ss_pred HHHHHHHHHHHHHHhCCCCCceE-EecCCccEEEEEEcCCC-----CCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeE
Confidence 999999999999874 5 566 44678899999998742 1345566777655 999999988753 5799
Q ss_pred EEEecc-ChHHHHHHHHHHHHHHHHhcc
Q 014603 394 RITFAV-EPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 394 Ris~~~-~~~~l~~~~~~l~~~~~~~~~ 420 (422)
||+++. +++++++++++|+++++++.+
T Consensus 393 Ris~~~~~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 393 RLSFCLPPDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999995 789999999999999987654
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=350.58 Aligned_cols=352 Identities=20% Similarity=0.339 Sum_probs=300.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+.++|+|+.|++. ++++|.+.+++.+++.+. ...|++ +..++++.+++++.+.+|..+++++|++|+|++++
T Consensus 30 ~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a 102 (391)
T 4dq6_A 30 GTNDLLPMWVADMD----FKAAPCIIDSLKNRLEQE-IYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPA 102 (391)
T ss_dssp SCSCSEECCSSSCS----SCCCHHHHHHHHHHHTTC-CCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred CCCCceeccccCCC----CCCCHHHHHHHHHHHhCC-CCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHH
Confidence 46889999999854 688899999999998753 335655 46899999999999887777889999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc--CCCCcccCHHHHHHhhcCCceEEEEeCCCCCccccc
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL--PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~ 200 (422)
++.++.+++++||+|+++.|+|+++...++..|.+++.++.+ .++++.+|++.+++.+++ ++++++++|+||||.++
T Consensus 103 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~ 181 (391)
T 4dq6_A 103 ISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVW 181 (391)
T ss_dssp HHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCC
T ss_pred HHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCc
Confidence 999999999999999999999999999999999999999987 345577999999999987 99999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
|.+++++|+++|+++|+++|+||+|+.+.++|....++..+.. .++++++.|+||.++++|+|+||+++++
T Consensus 182 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~------- 254 (391)
T 4dq6_A 182 TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPD------- 254 (391)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCS-------
T ss_pred CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCC-------
Confidence 9999999999999999999999999998888766666666654 3678999999999988999999999863
Q ss_pred hhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEec
Q 014603 279 SGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKL 355 (422)
Q Consensus 279 ~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~ 355 (422)
+++.+.+..... ..++++.+.+.++.++++. .+.++++.+++++++++.+.+.|++ +|++. +..+.++++.|+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~ 332 (391)
T 4dq6_A 255 EKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLK-VRKPEGTYLLWVDF 332 (391)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECCCSBSSEEEEEC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCE-ecCCCccEEEEEEh
Confidence 367777776643 2347788899998888875 3567888999999999999999998 78887 44788888888988
Q ss_pred CcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 356 NYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
+... .+..++...+.+++||.+.||..|+. .+++||+++++++++++++++|++++
T Consensus 333 ~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 333 SALG----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp GGGC----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred hhcC----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 7421 25677777776656999999988875 48999999999999999999999876
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=355.09 Aligned_cols=359 Identities=20% Similarity=0.296 Sum_probs=295.8
Q ss_pred ccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhh
Q 014603 23 ASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNR 102 (422)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 102 (422)
++++.++.+...+... . .++ ++|||+.|++. +++++.+.+++.+++. ....|++..+.+++|+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~-~-~~g-~~i~l~~~~~~----~~~~~~v~~a~~~~~~--~~~~y~~~~g~~~lr~~la~~l~~ 74 (376)
T 3ezs_A 4 FEPYPFERLRALLKEI-T-PKK-RGLDLGIGEPQ----FETPKFIQDALKNHTH--SLNIYPKSAFEESLRAAQRGFFKR 74 (376)
T ss_dssp CCCCHHHHHHHHHTTC-C-CSS-CCCBCSSCCCC----SCCCHHHHHHHHTTGG--GGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhh-h-ccC-CEEEeCCCCCC----CCCCHHHHHHHHHhhh--hcCCCCCCCCCHHHHHHHHHHHHH
Confidence 3455677777544432 2 235 89999999955 5678999999998873 345798888899999999999988
Q ss_pred cCCCCCCCCCEEEecCHHHHHHHHHHHhcCC--CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh
Q 014603 103 DLPYKLSPDDVYLTLGCTQAIEVILTVLARP--GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA 180 (422)
Q Consensus 103 ~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~--gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~ 180 (422)
.+|..+++++|++|+|++++++.++++++++ ||+|+++.|+|+++...++..|.+++.++.++.++ +++ .+++.+
T Consensus 75 ~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~-~l~~~~ 151 (376)
T 3ezs_A 75 RFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEND--FTP-SLNEKE 151 (376)
T ss_dssp HHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGT--SCC-CCCHHH
T ss_pred HhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCC--cch-hHHhhh
Confidence 7777778899999999999999999999999 99999999999999999999999999999865444 333 555556
Q ss_pred cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-C-----CCCCeEEEecCc
Q 014603 181 DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-G-----SIVPVLTLGSIS 254 (422)
Q Consensus 181 ~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~i~s~s 254 (422)
.++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++... ++... + ..++++++.|+|
T Consensus 152 ~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~s 230 (376)
T 3ezs_A 152 LQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPP-SLLEACMLAGNEAFKNVLVIHSLS 230 (376)
T ss_dssp HHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCC-CHHHHHHHTTCTTCTTEEEEEEST
T ss_pred ccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCC-CHHHccccccccccCcEEEEecch
Confidence 5678899999999999999999999999999999999999999999988876332 22221 1 345789999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.++++|+|+||++++ +++++.+..... ...+++.+.+.++.++++. ..++++.+++++++++.+.+.|
T Consensus 231 K~~g~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l 300 (376)
T 3ezs_A 231 KRSSAPGLRSGFIAGD--------SRLLEKYKAFRAYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIF 300 (376)
T ss_dssp TTTTCGGGCCEEEEEC--------HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCccceeEEEeeC--------HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHh
Confidence 9998999999999985 578888877654 3457788999999999986 4568888999999999999998
Q ss_pred hcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC----CCCeEEEEeccChHHHHHHHH
Q 014603 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----LKDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~~~~iRis~~~~~~~l~~~~~ 409 (422)
+ ++. .|.+++|+|+.++ +..++...+++++||.+.||..|+ ..+++||+++.++++++++++
T Consensus 301 ~---~~~---~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~ 366 (376)
T 3ezs_A 301 K---NTL---IYPYSFYVYLPVQ--------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLE 366 (376)
T ss_dssp T---TCC---CCSBSSEEEEECS--------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHH
T ss_pred c---CCC---CCCcceEEEEECC--------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHH
Confidence 7 343 6788999999886 366777777665799999999887 368999999889999999999
Q ss_pred HHHHHHHHh
Q 014603 410 RMKAFYDRH 418 (422)
Q Consensus 410 ~l~~~~~~~ 418 (422)
+|+++++++
T Consensus 367 ~l~~~l~~~ 375 (376)
T 3ezs_A 367 IIETYRENH 375 (376)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHHhc
Confidence 999988653
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=354.89 Aligned_cols=374 Identities=21% Similarity=0.316 Sum_probs=305.7
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCC
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGI 89 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~ 89 (422)
|...+++|+.....+.++.+++.. .++++|||+.|.++. ...+++.+.+++.+++... ....|++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~g~~~~--~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~ 76 (397)
T 2zyj_A 6 WSEAFGKGAGRIQASTIRELLKLT-------QRPGILSFAGGLPAP--ELFPKEEAAEAAARILREKGEVALQYSPTEGY 76 (397)
T ss_dssp HHHHSCGGGGGCCCCHHHHHHHHH-------TSTTCEEESSCCCCG--GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCC
T ss_pred HHHHhhhhhcccCchHHHHHHhhc-------cCCCceecCCCCCCc--hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCC
Confidence 544478888888888788877643 356789999998652 2346789999998887642 13478877789
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCc
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGW 169 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (422)
.++|+++++++ ++++++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.+++
T Consensus 77 ~~l~~~la~~~------g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~--- 147 (397)
T 2zyj_A 77 APLRAFVAEWI------GVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE--- 147 (397)
T ss_dssp HHHHHHHHHHH------TSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---
T ss_pred HHHHHHHHHHh------CCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---
Confidence 99999999999 457789999999999999999999999999999999999999999999999999987542
Q ss_pred ccCHHHHHHhhcC-CceEE-EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC---
Q 014603 170 EVDLDAVEALADE-NTVAL-VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI--- 244 (422)
Q Consensus 170 ~~d~~~l~~~~~~-~~~~i-~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~--- 244 (422)
++|++.|++.+++ +++++ ++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.++|....++..++.+
T Consensus 148 ~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (397)
T 2zyj_A 148 GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGY 227 (397)
T ss_dssp EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCC
Confidence 3899999998875 67777 578999999999999999999999999999999999999988876654555555544
Q ss_pred CCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 323 (422)
++++++.|+||+++ +|+|+||++++ +++++.+..... ...+.+.+.+.++.++|+.....++++.+++++
T Consensus 228 ~~~i~~~s~sK~~~-~G~r~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 298 (397)
T 2zyj_A 228 PGVIYLGSFSKVLS-PGLRVAFAVAH--------PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYR 298 (397)
T ss_dssp CCEEEEEESTTTTC-GGGCCEEEECC--------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CeEEEEeccccccc-ccceeEEEecC--------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67899999999988 99999999986 467777776543 334568889999999998632256788889999
Q ss_pred HHHHHHHHHhhc-CC-CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC----CCCeEEEEe
Q 014603 324 ETADICCDRLKE-IP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----LKDWLRITF 397 (422)
Q Consensus 324 ~~~~~l~~~L~~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~~~~iRis~ 397 (422)
++++.+.+.|++ +| ++. +..|.+|+++|+.++.. .+..++...+.++ ||.+.||..|+ ..+++||++
T Consensus 299 ~~~~~l~~~L~~~~~~g~~-~~~~~~g~~~~~~~~~~-----~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~ 371 (397)
T 2zyj_A 299 EKAQAMLHALDREVPKEVR-YTRPKGGMFVWMELPKG-----LSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSY 371 (397)
T ss_dssp HHHHHHHHHHHHHSCTTSE-ECCCSBSSEEEEECSTT-----CCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCeE-EccCCccEEEEEEcCCC-----CCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEc
Confidence 999999999987 57 576 44678889999998642 1466777777555 99999998875 357999999
Q ss_pred cc-ChHHHHHHHHHHHHHHHHhc
Q 014603 398 AV-EPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 398 ~~-~~~~l~~~~~~l~~~~~~~~ 419 (422)
+. +++++++++++|+++++++.
T Consensus 372 ~~~~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 372 ATLDREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 94 78999999999999998764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=348.84 Aligned_cols=353 Identities=20% Similarity=0.308 Sum_probs=292.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHH-HHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP-ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~-lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+++|||+.|++. +++++.+.+++.+++... ...|++. ..+ +|+++++++.+.+|.++++++|++|+|+++++
T Consensus 28 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al 100 (390)
T 1d2f_A 28 ADLLPFTISDMD----FATAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMV 100 (390)
T ss_dssp --CEECCSSSCS----SCCCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHH
T ss_pred CCeeEeeecCCC----CCCCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHH
Confidence 478999999854 578899999999988653 3477764 678 99999999988777778889999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC-CcccCHHHHHHhhcC-CceEEEEeCCCCCcccccC
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK-GWEVDLDAVEALADE-NTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~ 201 (422)
+.++++++++||+|+++.|+|+++...++..|.+++.++.++++ +|.+|++.|++.+++ +++++++++|+||||.++|
T Consensus 101 ~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~ 180 (390)
T 1d2f_A 101 SELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWT 180 (390)
T ss_dssp HHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcC
Confidence 99999999999999999999999999999999999999886543 467899999999876 7889999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.+++++|+++|+++|+++|+||+|+.+.++|....++..+..+-.-. +.|+||.++++|+|+||+++++ +++
T Consensus 181 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~-------~~~ 252 (390)
T 1d2f_A 181 CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIEN-------SSS 252 (390)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECS-------HHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECC-------HHH
Confidence 99999999999999999999999999888776555555554321013 9999999988999999999863 467
Q ss_pred HHHHHhhhh--hc-cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCc
Q 014603 282 VDSIKSFLN--IS-SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 282 ~~~~~~~~~--~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
.+.+..... .. ++++++.+.++.++++.. +.++++.+++++++++.+.+.|++ +|++. +..|.+++++|+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~ 330 (390)
T 1d2f_A 253 RDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAAFPELN-WQIPQSTYLAWLDLRP 330 (390)
T ss_dssp HHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-CCCCSBCSEEEEECGG
T ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCE-EecCCccEEEEEEccc
Confidence 777766554 22 377888888888888753 567888999999999999999998 78887 4467778888998864
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.. .+..++...+++++||.+.||..|+. ++++||+++.+++++++++++|.++++++
T Consensus 331 ~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 331 LN----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp GC----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred cC----CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 21 14667777776578999999988863 67999999988899999999999999875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-46 Score=350.65 Aligned_cols=364 Identities=26% Similarity=0.412 Sum_probs=295.5
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
++++|+..++++.++.+..... .+++|||+.|.+. +++++.+.+++.+++.. .+.|++..+..++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~ 68 (381)
T 1v2d_A 2 RLHPRTEAAKESIFPRMSGLAQ-------RLGAVNLGQGFPS----NPPPPFLLEAVRRALGR--QDQYAPPAGLPALRE 68 (381)
T ss_dssp CCCGGGGGC---CHHHHHHHHH-------HHTCEECCCCSCS----SCCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHH
T ss_pred chhhhhhhcCccHHHHHHHHHh-------cCCeEEecCCCCC----CCCCHHHHHHHHHHHHH--hcCCCCCCCCHHHHH
Confidence 3567888888777777665332 1458999999865 56789999999998865 457888778999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc--CCCCcccC
Q 014603 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL--PAKGWEVD 172 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~d 172 (422)
++++++ ++++++|++|+|++++++.++++++++||+|+++.|+|+++...++..|.+++.++.+ + +++.+|
T Consensus 69 ~la~~~------~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d 141 (381)
T 1v2d_A 69 ALAEEF------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTP-EGFRLD 141 (381)
T ss_dssp HHHHHH------TSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEET-TEEECC
T ss_pred HHHHhc------CCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCC-ccCCcC
Confidence 999998 5677899999999999999999999999999999999999999999999999999875 3 246789
Q ss_pred HHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEec
Q 014603 173 LDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGS 252 (422)
Q Consensus 173 ~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s 252 (422)
++.|++.++++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+ |....++..+ ..+.++++.|
T Consensus 142 ~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~-~~~~~~~~~s 219 (381)
T 1v2d_A 142 LSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREF-APERTFTVGS 219 (381)
T ss_dssp HHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHH-CTTTEEEEEE
T ss_pred HHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHh-cCCCEEEEee
Confidence 9999999988899999999999999999999999999999999999999999998876 4333344433 3356799999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICC 330 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 330 (422)
+||.++++|+|+||++++ +++++.+..... ...+++.+.+.++.++|+... +.++++.+++++++++.+.
T Consensus 220 ~sK~~~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 291 (381)
T 1v2d_A 220 AGKRLEATGYRVGWIVGP--------KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLA 291 (381)
T ss_dssp HHHHTTCGGGCCEEEECC--------TTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCcccceEEEEeC--------HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 999998899999999986 356676665543 345778888999888887532 4677888999999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEeccChHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALED 406 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~~~~~~l~~ 406 (422)
+.|++. ++. +..|.+++++|+.++.. + +..+++++||.+.||..|+. .+++||+++.+++++++
T Consensus 292 ~~L~~~-g~~-~~~~~~~~~~~~~~~~~------~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~ 359 (381)
T 1v2d_A 292 GGLRAM-GLR-VYVPEGTYFLMAELPGW------D----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHL 359 (381)
T ss_dssp HHHHHT-TCC-EECCSBSSEEEEECTTC------C----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHH
T ss_pred HHHHHC-CCE-ecCCCcceEEEEecChH------h----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHH
Confidence 999986 777 44677788999988641 2 45566788999999988764 67999999988999999
Q ss_pred HHHHHHHHHHHhcc
Q 014603 407 GLGRMKAFYDRHAK 420 (422)
Q Consensus 407 ~~~~l~~~~~~~~~ 420 (422)
++++|.+++++.++
T Consensus 360 ~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 360 ALERLGRVVNSPRE 373 (381)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHhhccc
Confidence 99999999887654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=353.72 Aligned_cols=383 Identities=19% Similarity=0.274 Sum_probs=300.4
Q ss_pred ccccHHHhhccCc-cHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC----CCCCCCCCCCC
Q 014603 14 FKANEELKTASGI-TVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS----ARFNCYSSTVG 88 (422)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g 88 (422)
..++.++..++.. ....+..+........++.++|+|++|++. ++.+|.+.+++.+++.. .....|++..+
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g 99 (432)
T 3ei9_A 24 VSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTT----EPIPEVITSAMAKKAHELSTIEGYSGYGAEQG 99 (432)
T ss_dssp CCCCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCC----SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTC
T ss_pred cccChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCC----CCCCHHHHHHHHHHHhcccccCCccCCCCCCC
Confidence 4456678888775 555566555554444567789999999855 68899999999998873 23347888889
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCC------------
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHL------------ 156 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~------------ 156 (422)
.+++|+++++++.+ ++++++++|++|+|+++++..+ ..++++||.|+++.|+|+++...++..|.
T Consensus 100 ~~~l~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 176 (432)
T 3ei9_A 100 AKPLRAAIAKTFYG--GLGIGDDDVFVSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYG 176 (432)
T ss_dssp CHHHHHHHHHHHHT--TTTCCGGGEEEESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEET
T ss_pred CHHHHHHHHHHHHc--cCCCCcceEEECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccC
Confidence 99999999999974 4567889999999999999974 77788999999999999999888877763
Q ss_pred eEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC
Q 014603 157 EVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236 (422)
Q Consensus 157 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~ 236 (422)
+++.+++++.+++..+++. .++++++++++|+||||.+++.+++++|+++|+++|++||+||+|+.+.+++.. .
T Consensus 177 ~~~~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~-~ 250 (432)
T 3ei9_A 177 NIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNP-R 250 (432)
T ss_dssp TCEEEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCC-S
T ss_pred ceEEeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCC-C
Confidence 5777777654444455433 357889999999999999999999999999999999999999999998776543 2
Q ss_pred CccccC-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHH
Q 014603 237 PMGVFG-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEF 314 (422)
Q Consensus 237 ~~~~~~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~ 314 (422)
++..+. ..++++++.|+||+|+++|+|+||+++++.........+.+.+..... ..++++++.+.++.+++......+
T Consensus 251 ~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 330 (432)
T 3ei9_A 251 SIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEA 330 (432)
T ss_dssp SGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHH
T ss_pred ChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHH
Confidence 333332 235689999999999999999999998742100000112565655443 345678899999988887534567
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCe
Q 014603 315 FSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDW 392 (422)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~ 392 (422)
+++.+++++++++.+.+.|+++ ++. +..+.+++|+|+.++.. ++.+++..+++++||.+.||..|+. .++
T Consensus 331 ~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~ 402 (432)
T 3ei9_A 331 MHKVIGFYKENTNIIIDTFTSL-GYD-VYGGKNAPYVWVHFPNQ------SSWDVFAEILEKTHVVTTPGSGFGPGGEGF 402 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCC-EEECSSSSEEEEECTTS------CHHHHHHHHHHHHCEECEEGGGGCGGGTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-Cce-ecCCCcceEEEEECCCC------CHHHHHHHHHHHCCEEEeCchHhCCCCCCE
Confidence 8899999999999999999988 777 43566788999999732 5777888888888999999998875 689
Q ss_pred EEEEeccChHHHHHHHHHHHHHHHH
Q 014603 393 LRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 393 iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+|||+.+++++|++++++|++-.+.
T Consensus 403 iRis~~~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 403 VRVSAFGHRENILEACRRFKQLYKH 427 (432)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999876543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=355.63 Aligned_cols=353 Identities=18% Similarity=0.282 Sum_probs=302.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
++++|+|+.|++. ++.+|.+.+++.+++... ...|++. ..++++++++++.+.+++.+++++|++|+|+++|+
T Consensus 60 g~~~i~~~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~ 132 (421)
T 3l8a_A 60 NPELLQMWVADMD----FLPVPEIKEAIINYGREH-IFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI 132 (421)
T ss_dssp CTTCEECCSSCCC----SCCCHHHHHHHHHHHHHC-CSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccCCCC----CCCCHHHHHHHHHHHhcC-CcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence 6889999999854 688999999999998753 3466654 38999999999998888778899999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc-CCCCcccCHHHHHHhhc-CCceEEEEeCCCCCcccccC
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL-PAKGWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~ 201 (422)
+.++++++++||+|+++.|+|+++...+...|.+++.+++. .++++.+|++.|++.++ ++++++++++|+||||.+++
T Consensus 133 ~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~ 212 (421)
T 3l8a_A 133 SIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWD 212 (421)
T ss_dssp HHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCC
T ss_pred HHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCC
Confidence 99999999999999999999999999999999999999986 44557789999999987 78999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
.+++++|+++|+++|+++|+||+|+.+.++|....++..+.. .++++++.|+||+++++|+|+||+++++ +
T Consensus 213 ~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~-------~ 285 (421)
T 3l8a_A 213 NDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQN-------E 285 (421)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCS-------H
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCC-------H
Confidence 999999999999999999999999999988876666666544 3678999999999988999999999864 4
Q ss_pred hHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCc
Q 014603 280 GIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNY 357 (422)
Q Consensus 280 ~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 357 (422)
++.+.+..... .+++++++.+.++.++++. .+.++++..++++++++.+.+.|+++|++. ...+.++++.|+.++.
T Consensus 286 ~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~-~~~~~~~~~~~v~~~~ 363 (421)
T 3l8a_A 286 SLRRKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIK-VMEPEGTYLVWLDFSA 363 (421)
T ss_dssp HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCE-EECCSBSSEEEEECGG
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCce-EeCCCeeEEEEEeccc
Confidence 67777776552 2347888999999999875 367789999999999999999999877887 4478888888998865
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
.. .+..++...+++++||.+.+|..|+. .+++||++++++++|++++++|+++++
T Consensus 364 ~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 364 YA----IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp GT----CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred cC----CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 21 14566777776778999999988875 689999999999999999999998874
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=354.46 Aligned_cols=372 Identities=17% Similarity=0.190 Sum_probs=307.6
Q ss_pred hccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHh
Q 014603 22 TASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLN 101 (422)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~ 101 (422)
....+.++.++....... ..+++++|+|+.|.+. +++++.+.+++.+.+.......|++..+.+++|++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~-~~~g~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~ 96 (437)
T 3g0t_A 22 DLGMASIRDLVALVTNLE-KATGTKFCRMEMGVPG----LPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAK 96 (437)
T ss_dssp CGGGCCHHHHHHHHHHHH-HHHTCCCEECCCCSCC----SCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH-HhcCCCEEeccCcCCC----CCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHH
Confidence 355677888887655432 2247889999999965 57889999999998875443689888889999999999999
Q ss_pred hcCCCCCCCCCEEEecCHHHHHHHHHHHhc--CCCC--EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHH
Q 014603 102 RDLPYKLSPDDVYLTLGCTQAIEVILTVLA--RPGA--NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177 (422)
Q Consensus 102 ~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~--~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 177 (422)
+.+|..+++++|++|+|++++++.++.+++ ++|| +|+++.|+|+++...++..|.+++.++++ .+++.+|++.|+
T Consensus 97 ~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~ 175 (437)
T 3g0t_A 97 LFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLE 175 (437)
T ss_dssp HHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHH
T ss_pred HhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHH
Confidence 887878889999999999999999999998 9999 99999999999999999999999999986 456678999999
Q ss_pred Hhh-cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC----Cc-cccCC-CCCeEEE
Q 014603 178 ALA-DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV----PM-GVFGS-IVPVLTL 250 (422)
Q Consensus 178 ~~~-~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~----~~-~~~~~-~~~~i~i 250 (422)
+.+ +++++++++++|+||||.+++.+++++|+++|+++|+++|+|++|+.+.+++.... ++ ..+.. .++++++
T Consensus 176 ~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (437)
T 3g0t_A 176 SYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILA 255 (437)
T ss_dssp HHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEE
T ss_pred HHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEE
Confidence 998 67899999999999999999999999999999999999999999998877643211 11 33332 4678999
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHH-H-----------------HHhhhh-hccCcchHHHHHHHHHHhhch
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD-S-----------------IKSFLN-ISSDPATFIQGAVPQILEKTE 311 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~-~~~~~~~~~~~a~~~~l~~~~ 311 (422)
.|+||.++++|+|+||++++ +++++ . +..... ...+++.+.+.++.++|+..
T Consensus 256 ~s~sK~~~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~- 326 (437)
T 3g0t_A 256 LSSSKAFSYAGQRIGVLMIS--------GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKAC- 326 (437)
T ss_dssp EESTTTTSCGGGCCEEEEEC--------HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHH-
T ss_pred EcCccCCCCccceeEEEEEC--------HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCc-
Confidence 99999998899999999986 45666 5 554443 34578889999999999762
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHhhcCCCCCCCC------CC-CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEE
Q 014603 312 EEF---FSKITDILRETADICCDRLKEIPCITCPK------KP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 381 (422)
Q Consensus 312 ~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~------~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v 381 (422)
+.+ +++.+++++++++.+.+.|+++ ++. +. .| .+++++|+.++. .+..++...+. ++||.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~-~~gi~v 397 (437)
T 3g0t_A 327 NDGEYNFRDSVIEYGRKARIMKKMFLDN-GFN-IVYDKDGNEPLADGFYFTVGYKG------MDSSKLIEKFV-RYGMCA 397 (437)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEE-ESSCEETTEECCSSSEEEEEETT------CCHHHHHHHHH-HTTEEC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCE-EeccccCCCCCceeEEEEEecCC------CCHHHHHHHHH-HcCeEE
Confidence 223 7888999999999999999998 776 43 24 788999998872 25677777775 459999
Q ss_pred ecCCCCCCC--CeEEEEec-cChHHHHHHHHHHHHHHHH
Q 014603 382 LPGITVGLK--DWLRITFA-VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 382 ~~g~~~~~~--~~iRis~~-~~~~~l~~~~~~l~~~~~~ 417 (422)
.|+..|+.. +++|||++ .+++++++++++|++++++
T Consensus 398 ~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 398 ITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp EESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred eeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999888763 78999999 5899999999999998754
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=360.53 Aligned_cols=369 Identities=23% Similarity=0.359 Sum_probs=286.5
Q ss_pred CceeecCCCCCCCCCCC---------------------CcHHHHHHHHHHhhCC---CCCCCCCCCCCHHHHHHHHHHHh
Q 014603 46 PLIPLGHGDPSAFPSFR---------------------TASVAVDAIVHSVRSA---RFNCYSSTVGILPARRAIADYLN 101 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~---------------------~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~ 101 (422)
.+|++++|+|......+ .|..+.+++.+.+... ....|++..|.+++|+++++++.
T Consensus 64 ~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 143 (498)
T 3ihj_A 64 EVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYIT 143 (498)
T ss_dssp SCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 78999999985422111 1445556656666542 34689999999999999999999
Q ss_pred hcC-CCCCCCCCEEEecCHHHHHHHHHHHhcCCCC----EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHH
Q 014603 102 RDL-PYKLSPDDVYLTLGCTQAIEVILTVLARPGA----NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 102 ~~~-~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 176 (422)
+.. |+.+++++|++|+|+++++..++++++++|| .|+++.|+|+.+...+...|.+++.++++++++|.+|++.|
T Consensus 144 ~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l 223 (498)
T 3ihj_A 144 RRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNEL 223 (498)
T ss_dssp HHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHH
T ss_pred HhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHH
Confidence 877 4788899999999999999999999998875 99999999999999999999999999998777899999999
Q ss_pred HHhhcC-----CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCccccC--------
Q 014603 177 EALADE-----NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVFG-------- 242 (422)
Q Consensus 177 ~~~~~~-----~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~-------- 242 (422)
++.+++ +++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++. ...++..+.
T Consensus 224 e~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~ 303 (498)
T 3ihj_A 224 RRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYS 303 (498)
T ss_dssp HHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHH
T ss_pred HHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhccccc
Confidence 998865 589999999999999999999999999999999999999999999888753 344443321
Q ss_pred CCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhh------chH---
Q 014603 243 SIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEK------TEE--- 312 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~--- 312 (422)
.+.++++++|+||.| |.+|+|+||++.... .+++++.+........+++.+.|.++..+++. .-+
T Consensus 304 ~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~ 378 (498)
T 3ihj_A 304 SNVELASFHSTSKGYMGECGYRGGYMEVINL-----HPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFS 378 (498)
T ss_dssp TTCCEEEEEESSSSTTCCSSSCCEEEEEESC-----CHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHH
T ss_pred CceeEEEEeccccccccCcccceEEEEEecC-----CHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHH
Confidence 123479999999999 679999999984211 15788888777666667888999998888863 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc-------cCCCCHHHH-HHHHHHhcCeEEecC
Q 014603 313 EFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-------EGINSDMEF-ALKLAKEESVIVLPG 384 (422)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~-~~~l~~~~gi~v~~g 384 (422)
....+.+++++++++.+.+.|+++|++. +..|.+++|+|++++.+.. .+. +..++ +..+++++||.+.||
T Consensus 379 ~~~~~~~~~l~~~~~~l~~~L~~~~g~~-~~~p~gg~~~~~~l~~p~~~~~~~~~~g~-~~~~~~~~~ll~~~gI~v~pG 456 (498)
T 3ihj_A 379 REKESVLGNLAKKAKLTEDLFNQVPGIH-CNPLQGAMYAFPRIFIPAKAVEAAQAHQM-APDMFYCMKLLEETGICVVPG 456 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEE-CCCCCBSSEECCEECCCHHHHHHHHHTTS-CHHHHHHHHHHHHHCBCCEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcE-ecCCCeEEEEEEeccCchhhhHHHHhcCC-CcHHHHHHHHHHHCCEEEEeC
Confidence 2345677889999999999999998988 4588999999977642100 011 33443 567778889999999
Q ss_pred CCCCC---CCeEEEEeccChHHHHHHHHHHHHHHHHhccc
Q 014603 385 ITVGL---KDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 385 ~~~~~---~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
..|+. .+++|++++.+++++++++++|.++++++.++
T Consensus 457 ~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 457 SGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp GGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 45999999988999999999999999888653
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-46 Score=355.81 Aligned_cols=372 Identities=18% Similarity=0.184 Sum_probs=296.5
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCC---CCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHG---DPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGIL 90 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g---~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~ 90 (422)
+++++++...+++.++.+...+.+. ..+++|||+.| ++. ...++++.+.+++.+.+.......|++..|.+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~G~y~d~~--~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~ 95 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNAD----TRPTKVNLGVGVYTNED--GKIPLLRAVRDAEKARVEAGLPRGYLPIDGIA 95 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHHC----CCSSCEECCCCSCCCTT--SCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHhc----CCCCcEEeeeeeeECCC--CCccCcHHHHHHHHHHhccCCCCCCCCCCCcH
Confidence 5567899999999999999877654 35689999999 444 22345699999999998875556899889999
Q ss_pred HHHHHHHHHHhhcCCCCCCCC--CEEEecCHHHHHHHHH--HHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC
Q 014603 91 PARRAIADYLNRDLPYKLSPD--DVYLTLGCTQAIEVIL--TVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA 166 (422)
Q Consensus 91 ~lr~~ia~~l~~~~~~~~~~~--~i~~~~g~~~a~~~~~--~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (422)
++|+++++++....+..++++ +|++|+|+++|++.++ .+++++||+|++++|+|.++...++..|.+++.++..+.
T Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~ 175 (420)
T 4f4e_A 96 AYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDA 175 (420)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEET
T ss_pred HHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeecc
Confidence 999999999976443333677 8999999999999995 456789999999999999999999999999999998444
Q ss_pred CCcccCHHHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCcccc-
Q 014603 167 KGWEVDLDAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVF- 241 (422)
Q Consensus 167 ~~~~~d~~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~- 241 (422)
+++.+|++.+++.++ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++. ...++..+
T Consensus 176 ~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 255 (420)
T 4f4e_A 176 KTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFA 255 (420)
T ss_dssp TTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHH
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHH
Confidence 567899999999887 5778899999999999999999999999999999999999999999887642 12222222
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH----HHhhh-hhccCcchHHHHHHHHHHhhch-----
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS----IKSFL-NISSDPATFIQGAVPQILEKTE----- 311 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~a~~~~l~~~~----- 311 (422)
+..++++++.|+||.|+++|+|+||+++..+. +++++. ++... ..+.+++.+.+.++..++....
T Consensus 256 ~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 330 (420)
T 4f4e_A 256 AANLNVFVSSSFSKSFSLYGERVGALSIITDS-----KDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASW 330 (420)
T ss_dssp HTTCCEEEEEECTTTTTCGGGCEEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHH
T ss_pred hcCCCEEEEEeCCccCcCcCCCcEEEEEEcCC-----HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHH
Confidence 23457899999999999999999999753211 344433 33222 2344677888888888887632
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC
Q 014603 312 EEFFSKITDILRETADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388 (422)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 388 (422)
+.++++.+++++++++.+.+.|+++ +++. +..|.+|+|+|+.++ . +.+..+++++||.+.|+.
T Consensus 331 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~g~~~~~~~~---------~-~~~~~~l~~~gI~v~~~~--- 396 (420)
T 4f4e_A 331 VQELGEMRDRIRAMRNGLVERLKAAGIERDFS-FINAQRGMFSYSGLT---------S-AQVDRLREEFGIYAVSTG--- 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCT-HHHHSCSSEEECCCC---------H-HHHHHHHHHHCEECCTTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCce-eECCCccEEEEeCCC---------H-HHHHHHHHhCCEEecCCC---
Confidence 4567888999999999999999987 3666 446788999997663 3 345566678899999863
Q ss_pred CCCeEEEEec-cChHHHHHHHHHHHHHH
Q 014603 389 LKDWLRITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 389 ~~~~iRis~~-~~~~~l~~~~~~l~~~~ 415 (422)
|+|++ .+++++++++++|++++
T Consensus 397 -----Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 397 -----RICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp -----EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred -----eEEEecCCHHHHHHHHHHHHHHh
Confidence 99998 48888999999999876
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=339.03 Aligned_cols=333 Identities=19% Similarity=0.260 Sum_probs=282.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+..++|+|+.|.+. +++++.+.+++.+.+.. ...|+ ..+..++|+++++++ ++++++|++|+|++++
T Consensus 30 ~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~-~~~~~~lr~~la~~~------~~~~~~v~~~~g~t~a 96 (363)
T 3ffh_A 30 GLTKITKLSSNENP----LGTSKKVAAIQANSSVE--TEIYP-DGWASSLRKEVADFY------QLEEEELIFTAGVDEL 96 (363)
T ss_dssp TCSCCEECSSCSCT----TCCCHHHHHHHHTCBSC--CCBC-----CHHHHHHHHHHH------TCCGGGEEEESSHHHH
T ss_pred CCCceEEccCCCCC----CCCCHHHHHHHHHHHHH--hhcCC-CcchHHHHHHHHHHh------CCChhhEEEeCCHHHH
Confidence 45789999999854 67889999999987643 44665 467899999999999 4678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
++.++++++++||+|+++.|+|+++...++..|.+++.++.++ ++.+|++.+++.++++++++++++|+||||.+++.
T Consensus 97 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~ 174 (363)
T 3ffh_A 97 IELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIEL 174 (363)
T ss_dssp HHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCH
T ss_pred HHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCH
Confidence 9999999999999999999999999999999999999999864 46799999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++.+|++.|++ |+++|+|++|+.+.+ +.....+......++++++.|+||.++++|+|+||++++ +++.
T Consensus 175 ~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~~~ 244 (363)
T 3ffh_A 175 ADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD--------KEII 244 (363)
T ss_dssp HHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC--------HHHH
T ss_pred HHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC--------HHHH
Confidence 999999998888 999999999998777 543334444445668899999999998899999999985 5788
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+..... ..+++.+.+.++.++|+. ..++++.+++++++++.+.+.|++++++. + .+..+.|+|+.++.
T Consensus 245 ~~l~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~~~~~~~~~~~~----- 314 (363)
T 3ffh_A 245 RQLNIVRP-PFNTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFAKRFEKVK-L-YPANGNFVLIDLGI----- 314 (363)
T ss_dssp HHHHHTCC-SCCCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCE-E-CCCCSSEEEEECSS-----
T ss_pred HHHHHhCC-CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhhCCCce-E-CCCCCeEEEEECCC-----
Confidence 88877654 357888999999999975 47788999999999999999999966877 4 35557788998863
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
+..++...+. ++||.+.+|..|+.++++||+++ +++++++++++|+++
T Consensus 315 --~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 315 --EAGTIFSYLE-KNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp --CHHHHHHHHH-HTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHH-HCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence 4667777665 56999999999988999999998 788999999999875
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=346.94 Aligned_cols=385 Identities=14% Similarity=0.120 Sum_probs=299.8
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCH
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVGIL 90 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~ 90 (422)
|.+..+++.....++.+..+...+.+...+..+.++|+|+.|.|.+ .+.+++++.+.+++.+.... ....|.+..|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~~~~g~~ 83 (418)
T 3rq1_A 5 TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDS-EHVGYAPIAGIP 83 (418)
T ss_dssp CCCSCTTTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHH-HHHSCCCTTCCH
T ss_pred hhhhHhhcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhccc-ccCCCCCCCChH
Confidence 3444455566667778888887777665555677899999998732 23467888998888765432 234788888999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcc
Q 014603 91 PARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWE 170 (422)
Q Consensus 91 ~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (422)
++|+++++++....+.. .+++|++|+|+++++..++++++++||+|+++.|+|.++...++..|.+++.+++.+++ +.
T Consensus 84 ~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~ 161 (418)
T 3rq1_A 84 DFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NN 161 (418)
T ss_dssp HHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SS
T ss_pred HHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CC
Confidence 99999999997643311 12399999999999999999999999999999999999999999999999999986543 67
Q ss_pred cCHHHHHHhhcC----Cce-EEEEeCC-CCCcccccCHHHHHHHHHHHH------HcCcEEEEcccccccccCCCCCCCc
Q 014603 171 VDLDAVEALADE----NTV-ALVIINP-GNPCGNVYTYQHLQKIAETAK------KLGIMVIADEVYDHLAFGNTPFVPM 238 (422)
Q Consensus 171 ~d~~~l~~~~~~----~~~-~i~i~~p-~nptG~~~~~~~l~~i~~~~~------~~~~~li~D~~~~~~~~~~~~~~~~ 238 (422)
+|++.|++.+++ +++ ++++++| +||||.+++.+++++|+++|+ ++|+++|+||+|..+.+++....++
T Consensus 162 ~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~ 241 (418)
T 3rq1_A 162 FNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAF 241 (418)
T ss_dssp BCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGG
T ss_pred cCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHH
Confidence 999999998864 555 7788899 999999999999999999999 8999999999999887765322222
Q ss_pred c-ccC-CCCC--eEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-----ccCcchHHHHHHHHHHhh
Q 014603 239 G-VFG-SIVP--VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-----SSDPATFIQGAVPQILEK 309 (422)
Q Consensus 239 ~-~~~-~~~~--~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~l~~ 309 (422)
. ... ..++ +++++|+||.|+++|+|+||+++..+ ++++++.+...... ++.++.+++.++..+|++
T Consensus 242 ~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 316 (418)
T 3rq1_A 242 FNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISD-----DEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVAD 316 (418)
T ss_dssp GGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEES-----SHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeC-----CHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCC
Confidence 1 111 1233 58899999999999999999998210 05677777665421 245788899999988876
Q ss_pred ch-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 310 TE-----EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 310 ~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
.. ...+++.+++++++++.+.+.|+++ ++. +..|.+++|+|+.++ +..++... ++++||.+.||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~--------~~~~~~~~-l~~~gi~v~~g 385 (418)
T 3rq1_A 317 PAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLP-MLPYRGGFFITIPTD--------SANAICEE-LKKEHIYVIAL 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-CCCCCSSSEEEEECT--------THHHHHHH-HHHTTEECEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CCCCCceEEEEcCCC--------CHHHHHHH-HHhCCEEEecC
Confidence 32 1234456678899999999999988 777 447888999998774 45666664 57789999998
Q ss_pred CCCCCCCeEEEEec-cChHHHHHHHHHHHHHHHHhcc
Q 014603 385 ITVGLKDWLRITFA-VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 385 ~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.+++|||++ .+++++++++++|+++++++.+
T Consensus 386 -----~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (418)
T 3rq1_A 386 -----ANGIRIAACGIPKCQMTGLAEKIYNAMKSLGK 417 (418)
T ss_dssp -----SSEEEEEGGGSCHHHHTTHHHHHHHHHHHTTC
T ss_pred -----CCCeEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 368999998 6999999999999999987653
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=342.70 Aligned_cols=373 Identities=16% Similarity=0.204 Sum_probs=285.5
Q ss_pred ccHHHhhccCcc-HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC----CCCCCCCCCCCH
Q 014603 16 ANEELKTASGIT-VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA----RFNCYSSTVGIL 90 (422)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~ 90 (422)
++.++..++.+. +.++.++...+.....++++|+|+.|+++ ++++|.+.+++.+++... ....|++..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~ 78 (400)
T 3asa_A 3 RNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTT----QPLNASVAEAFASSIARLSSPTTCRGYGPDFGLP 78 (400)
T ss_dssp CCHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCC----CCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCH
T ss_pred cchhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCC----CCCCHHHHHHHHHHHhcccccccccCCCCCCCCH
Confidence 467787777644 45555555554434457889999999865 567889999998887541 235788778899
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCe-EEEeeccCCCCc
Q 014603 91 PARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLE-VRHFDLLPAKGW 169 (422)
Q Consensus 91 ~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 169 (422)
++|+++++++. .|. +++++|++|+|++++++.++.. +++||+|+++.|+|+++...++..|.+ ++.++.++++++
T Consensus 79 ~lr~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 154 (400)
T 3asa_A 79 ALRQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLSF-FGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF 154 (400)
T ss_dssp HHHHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHHH-HCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTT
T ss_pred HHHHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHHH-cCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCc
Confidence 99999999964 233 6788999999999999997654 578999999999999999988889988 888887654444
Q ss_pred ccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeE
Q 014603 170 EVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVL 248 (422)
Q Consensus 170 ~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i 248 (422)
..+++. . ++++++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++....++..++. .++++
T Consensus 155 ~~~l~~----~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (400)
T 3asa_A 155 FPEFPE----D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAI 229 (400)
T ss_dssp CCCCCT----T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEE
T ss_pred ccChhh----c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceE
Confidence 444332 1 46889999999999999999999999999999999999999999987776543344545432 34689
Q ss_pred EEecCccccCCCCceeEEEEeeCCCCcccchhH-------HHHHHhh-h-hhccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI-------VDSIKSF-L-NISSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~~~-~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
++.|+||.|+++|+|+||+++++ ++ ++.+... . ...++++.+.|.++.++|+.. ++++.+
T Consensus 230 ~~~s~sK~~g~~GlriG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~ 298 (400)
T 3asa_A 230 EINSFSKPLGFAGIRLGWTVIPQ--------ELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAI 298 (400)
T ss_dssp EEEECCGGGTTTTCCCEEEECCT--------TCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHH
T ss_pred EEecchhhcCCcchheeEEeeCh--------hhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHH
Confidence 99999999988999999999864 23 3333221 2 223467889999998888753 577788
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEe-cCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEE
Q 014603 320 DILRETADICCDRLKEIPCITCPKKPEGSMFVMVK-LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRIT 396 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis 396 (422)
++++++++.+.+.|+++ ++. +..|.+++|+|+. ++.. .++.++...+++++||.+.||..|+. ++++||+
T Consensus 299 ~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis 371 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT-GFE-VFGGEHAPYLWVKPTQAN-----ISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS 371 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-TCE-EEECSSSSEEEEECCCTT-----CCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHC-CCe-eeCCCCceEEEEeccCCC-----CCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE
Confidence 89999999999999987 776 4356678899998 7532 13446677777777999999988763 6789999
Q ss_pred eccChHHHHHHHHHHHHHHHHhc
Q 014603 397 FAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 397 ~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+..+++++++++++|+++++++.
T Consensus 372 ~~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 372 SLGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp CCSCHHHHHHHHHHHHC------
T ss_pred eeCCHHHHHHHHHHHHHHHHhhh
Confidence 77889999999999999987653
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=343.38 Aligned_cols=362 Identities=21% Similarity=0.356 Sum_probs=291.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC-----------CCCCCCCCCCHHHHHHHHHHHhhcCC--CCCC
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR-----------FNCYSSTVGILPARRAIADYLNRDLP--YKLS 109 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~-----------~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~ 109 (422)
++..+|+|+.+.- ...++.+.+++.++..... ...|++..|.+++|+++++++++..+ ..++
T Consensus 36 ~p~~~i~lg~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~ 110 (435)
T 3piu_A 36 NTNGIIQMGLAEN-----QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFD 110 (435)
T ss_dssp BTTSBEECSSCCC-----CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCC
T ss_pred CCCCeEEeccccc-----cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCC
Confidence 3555788888652 2347788888887654221 13688888999999999999985433 4567
Q ss_pred CCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh-hCCCeEEEeeccCCCCcccCHHHHHHhhcC------
Q 014603 110 PDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT-HSHLEVRHFDLLPAKGWEVDLDAVEALADE------ 182 (422)
Q Consensus 110 ~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------ 182 (422)
+++|++|+|+++|+..++.+++++||.|+++.|+|+++...+. ..|.+++.++.++.+++.+|++.|++.+++
T Consensus 111 ~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 190 (435)
T 3piu_A 111 PNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNL 190 (435)
T ss_dssp GGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999988877 789999999987766678899999998865
Q ss_pred CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC----------CCCeEEEec
Q 014603 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS----------IVPVLTLGS 252 (422)
Q Consensus 183 ~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~----------~~~~i~i~s 252 (422)
+++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.|++....++..+.. .++++++.|
T Consensus 191 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s 270 (435)
T 3piu_A 191 RVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYS 270 (435)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEE
T ss_pred CeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEe
Confidence 7889999999999999999999999999999999999999999998887765555443322 356899999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICC 330 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~ 330 (422)
+||.|+++|+|+||+++++ +++.+.+...... ...+++.+.++.++++... +.++++.+++++++++.+.
T Consensus 271 ~sK~~g~~G~r~G~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (435)
T 3piu_A 271 LSKDLGLPGFRVGAIYSND-------DMVVAAATKMSSF-GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLV 342 (435)
T ss_dssp SSSSSCCGGGCEEEEEESC-------HHHHHHHHHHGGG-SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccCCCceeEEEEEeCC-------HHHHHHHHHHhhc-CCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988999999999853 4566666654433 4667888988888887633 3467788899999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCC-CCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEecc-ChHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI-NSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALED 406 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~-~~~~l~~ 406 (422)
+.|+++ ++. +..+.+|+++|+.++....... .+..++...+++++||.+.||..|+. ++++||+++. +++++++
T Consensus 343 ~~L~~~-g~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~ 420 (435)
T 3piu_A 343 SGLQKS-GIS-CLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDL 420 (435)
T ss_dssp HHHHTT-TCE-ECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHH
T ss_pred HHHHhc-CCc-ccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHH
Confidence 999988 777 4467778999999875311000 02346677777777999999988754 6899999985 8999999
Q ss_pred HHHHHHHHHHHhc
Q 014603 407 GLGRMKAFYDRHA 419 (422)
Q Consensus 407 ~~~~l~~~~~~~~ 419 (422)
++++|+++++++.
T Consensus 421 ~l~~l~~~l~~~~ 433 (435)
T 3piu_A 421 AMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=348.74 Aligned_cols=349 Identities=16% Similarity=0.219 Sum_probs=286.0
Q ss_pred CCCceeecCCCC-CCCCCCCCcHHH--HHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCC---EEEec
Q 014603 44 TRPLIPLGHGDP-SAFPSFRTASVA--VDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDD---VYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~-~~~~~~~~~~~v--~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~---i~~~~ 117 (422)
.+++|||+.|.+ . ++.+|.+ .+++.+.+.......|++..|.+++|+++++++.+.. .++++++ |++|+
T Consensus 46 ~~~~i~l~~g~~~~----~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~ 120 (430)
T 2x5f_A 46 KSTTYNATIGMATN----KDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTN 120 (430)
T ss_dssp TTCSEECCCSSCEE----TTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEES
T ss_pred CCCcEEeeeeeccC----CCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcC
Confidence 357899999996 4 3445555 6666665543234689888889999999999997764 5677888 99999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhh-CCCeEEEeeccCCCCcccCHHHHHHhhcC---CceEEEEeCCC
Q 014603 118 GCTQAIEVILTVLARPGANILLPRPGFPYYEARATH-SHLEVRHFDLLPAKGWEVDLDAVEALADE---NTVALVIINPG 193 (422)
Q Consensus 118 g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~ 193 (422)
|+++|++.++++++++||+|+++.|+|+++...++. .|.+++.++.++.+ +.+|++.|++.+++ +++++++++|+
T Consensus 121 g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~ 199 (430)
T 2x5f_A 121 ALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPN 199 (430)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSC
T ss_pred CchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 999999999999999999999999999999999998 99999999876533 67899999998876 78899999999
Q ss_pred CCcccccCHHHHHHHHHHHHH-----cCcEEEEcccccccccCCCCCCCcc-ccCC-CCC---eEEEecCccccCCCCce
Q 014603 194 NPCGNVYTYQHLQKIAETAKK-----LGIMVIADEVYDHLAFGNTPFVPMG-VFGS-IVP---VLTLGSISKRWIVPGWR 263 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~-----~~~~li~D~~~~~~~~~~~~~~~~~-~~~~-~~~---~i~i~s~sK~~~~~G~r 263 (422)
||||.+++.+++++|+++|++ +|+++|+||+|+.+.+++....++. .+.. .++ ++++.|+||.|+++|+|
T Consensus 200 nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 279 (430)
T 2x5f_A 200 NPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFR 279 (430)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGC
T ss_pred CCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCC
Confidence 999999999999999999999 9999999999999888765444443 3322 456 89999999999889999
Q ss_pred eEEEEe---eCCCCcccchhHHHHHHhhhh-----hccCcchHHHHHHHHHHh-hch-HHHHHHHHHHHHHHHHHHHHHh
Q 014603 264 LGWLVT---SDPNGILQDSGIVDSIKSFLN-----ISSDPATFIQGAVPQILE-KTE-EEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 264 ~G~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~-~~~-~~~~~~~~~~~~~~~~~l~~~L 333 (422)
+||+++ + +++++.+..... .+.+++.+.|.++.++|+ ... ...+++.+++++++++.+.+.|
T Consensus 280 iG~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 351 (430)
T 2x5f_A 280 VGFMTFGTSD--------QTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVV 351 (430)
T ss_dssp CEEEEEBCCC--------HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCC--------HHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 5 567777766543 345788999999999998 631 2334448889999999999999
Q ss_pred h----cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-cChHHHHHHH
Q 014603 334 K----EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGL 408 (422)
Q Consensus 334 ~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-~~~~~l~~~~ 408 (422)
+ +. ++. +..|.+|+|+|+.++ . .+..++...+++++||.+.|| ..+++||+++ .+++++++++
T Consensus 352 ~~~~~~~-g~~-~~~~~~g~~~~~~~~-~-----~~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~ 419 (430)
T 2x5f_A 352 YADQYHS-HWQ-AYDFNSGYFMAIKVH-D-----VDPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVF 419 (430)
T ss_dssp TCGGGTT-TEE-ECCCCBSSEEEEEES-S-----SCHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHH
T ss_pred HhhCCCC-Cce-eeCCCceEEEEeCCC-C-----CCHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHH
Confidence 8 55 666 446778889999887 2 156778787766579999998 3579999999 8899999999
Q ss_pred HHHHHHHHHh
Q 014603 409 GRMKAFYDRH 418 (422)
Q Consensus 409 ~~l~~~~~~~ 418 (422)
++|+++++++
T Consensus 420 ~~l~~~l~~~ 429 (430)
T 2x5f_A 420 DSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998765
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=341.17 Aligned_cols=359 Identities=20% Similarity=0.358 Sum_probs=285.2
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC----------CCCCCCCCCCCCHHHHHHHHHHHhhcCCCC--CCCCC
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS----------ARFNCYSSTVGILPARRAIADYLNRDLPYK--LSPDD 112 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~--~~~~~ 112 (422)
..+|+|+.+... + .++.+.+++.++... .....|++..|..++|+++++++++.+|.. +++++
T Consensus 36 ~~~i~l~~~~~~----~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~ 110 (428)
T 1iay_A 36 NGVIQMGLAENQ----L-CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPER 110 (428)
T ss_dssp TSBEECSSCCCC----S-SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred Cceeeeccccch----h-hHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence 568999977622 2 346888888754310 013478887789999999999998877655 77899
Q ss_pred EEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh-hCCCeEEEeeccCCCCcccCHHHHHHhhcC------Cce
Q 014603 113 VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT-HSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTV 185 (422)
Q Consensus 113 i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~ 185 (422)
|++++|+++++..++++++++||+|+++.|+|+++...+. ..|.+++.++.+.++++.+|++.+++.+++ +++
T Consensus 111 i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 190 (428)
T 1iay_A 111 VVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVK 190 (428)
T ss_dssp CEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceE
Confidence 9999999999999999999999999999999999876554 679999998886555677899999988753 688
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--------CCCeEEEecCcccc
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--------IVPVLTLGSISKRW 257 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--------~~~~i~i~s~sK~~ 257 (422)
++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++....++..+.. .++++++.|+||.|
T Consensus 191 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~ 270 (428)
T 1iay_A 191 GLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM 270 (428)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS
T ss_pred EEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhc
Confidence 8999999999999999999999999999999999999999998776644434433322 36789999999999
Q ss_pred CCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 258 IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 258 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
+++|+|+||+++++ +++++.+...... .+++.++|.++..+|+... +.++++.+++++++++.+.+.|++
T Consensus 271 g~~Glr~G~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (428)
T 1iay_A 271 GLPGFRVGIIYSFN-------DDVVNCARKMSSF-GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV 342 (428)
T ss_dssp SCGGGCEEEEEESC-------HHHHHHHHHHHTT-SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeCC-------HHHHHHHHHHHhc-ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999853 4677777655433 4678899999999998632 347788889999999999999999
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccC-CCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHHHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEG-INSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALEDGLGRM 411 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~~~~~~l 411 (422)
+ ++. +..+.+|+|+|++++...... .....++...+++++||.+.+|..|+. ++++||+++ .+++++++++++|
T Consensus 343 ~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l 420 (428)
T 1iay_A 343 V-GIK-CLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARI 420 (428)
T ss_dssp T-TCC-BCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHH
T ss_pred c-CCc-ccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHH
Confidence 8 776 435667899999986421000 002345666666666999999988765 579999999 8999999999999
Q ss_pred HHHHHHh
Q 014603 412 KAFYDRH 418 (422)
Q Consensus 412 ~~~~~~~ 418 (422)
++++++.
T Consensus 421 ~~~l~~~ 427 (428)
T 1iay_A 421 RRFVGVE 427 (428)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 9998753
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=343.04 Aligned_cols=366 Identities=16% Similarity=0.145 Sum_probs=288.5
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCC---CCCCCCCCCCcHHHHHHHHH-HhhCCCCCCCCCCCCCHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHG---DPSAFPSFRTASVAVDAIVH-SVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g---~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~y~~~~g~~~lr~ 94 (422)
++...+++.++.+...+.+. ..+++|||+.| ++. ...+.++.+.+++.+ .+.......|++..|.+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~y~d~~--~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~ 77 (397)
T 3fsl_A 4 KVDAYAGDPILTLMERFKED----PRSDKVNLSIGLYYNED--GIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRH 77 (397)
T ss_dssp TCCCCCCCHHHHHHHHHHTC----CCSCCEECSSCCCCCTT--SCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHH
T ss_pred cCCCCCCCchhhHHHHHhcC----CCCCeEEEeeeEEECCC--CCccCcHHHHHHHHhhccCccccccCCCCCchHHHHH
Confidence 45667778888888766654 46779999999 433 123456999999999 887645568988889999999
Q ss_pred HHHHHHhhcCCCCCCCC--CEEEecCHHHHHHHHHH--HhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcc
Q 014603 95 AIADYLNRDLPYKLSPD--DVYLTLGCTQAIEVILT--VLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWE 170 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~--~i~~~~g~~~a~~~~~~--~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (422)
++++++....+..++++ +|++|+|++++++.+++ +++++||+|+++.|+|+++...++..|.+++.++..+.+++.
T Consensus 78 ~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (397)
T 3fsl_A 78 AIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNG 157 (397)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTE
T ss_pred HHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCc
Confidence 99999976443333678 89999999999999954 557899999999999999999999999999999885445678
Q ss_pred cCHHHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCcccc-CCCC
Q 014603 171 VDLDAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVF-GSIV 245 (422)
Q Consensus 171 ~d~~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~-~~~~ 245 (422)
+|++.+++.++ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++. ...++..+ +..+
T Consensus 158 ~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T 3fsl_A 158 VRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGL 237 (397)
T ss_dssp ECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTC
T ss_pred CcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCC
Confidence 99999999887 5678888999999999999999999999999999999999999999887632 12223222 2346
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh----h-hhccCcchHHHHHHHHHHhhch-----HHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF----L-NISSDPATFIQGAVPQILEKTE-----EEFF 315 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~ 315 (422)
++++++|+||.|+++|+|+||++++.+. ++++..+... . ..+.+++.+.+.++..++.... ..++
T Consensus 238 ~~i~~~S~SK~~~~~G~riG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 312 (397)
T 3fsl_A 238 PALVSNSFSKIFSLYGERVGGLSVMCED-----AEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEV 312 (397)
T ss_dssp CEEEEEECTTTTTCGGGCCEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred CEEEEecccccccCcCCCeeEEEEecCC-----HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7899999999999999999999864221 3444433222 1 2344667888888888887532 4667
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCe
Q 014603 316 SKITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 392 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 392 (422)
++.+++++++++.+.+.|++++ ++. +..|.+|+|+|+.++ . +.+..+++++||.+.||.
T Consensus 313 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gi~v~~g~------- 374 (397)
T 3fsl_A 313 EEMRTRILAMRQELVKVLSTEMPERNFD-YLLNQRGMFSYTGLS---------A-AQVDRLREEFGVYLIASG------- 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCCT-HHHHCCSSEEECCCC---------H-HHHHHHHHTTCEECCTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCce-eecCCceEEEecCCC---------H-HHHHHHHHhCCEEECCCC-------
Confidence 8889999999999999999874 566 446778899997763 3 335566788899999974
Q ss_pred EEEEecc-ChHHHHHHHHHHHHH
Q 014603 393 LRITFAV-EPSALEDGLGRMKAF 414 (422)
Q Consensus 393 iRis~~~-~~~~l~~~~~~l~~~ 414 (422)
||+++. +++++++++++|+++
T Consensus 375 -Ris~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 375 -RMCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp -EEEGGGCCTTTHHHHHHHHHHH
T ss_pred -eEEEEecCHhhHHHHHHHHHhh
Confidence 999984 888899999999876
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=333.07 Aligned_cols=336 Identities=17% Similarity=0.252 Sum_probs=285.5
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.++..+|||+.|.+. +++++.+.+++.+.+.. ...|+. .+.+++|+++++++ ++++++|++|+|+++
T Consensus 13 ~~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 13 PSTDNPIRINFNENP----LGMSPKAQAAARDAVVK--ANRYAK-NEILMLGNKLAAHH------QVEAPSILLTAGSSE 79 (354)
T ss_dssp CCSSSCEECSSCCCS----SCCCHHHHHHHHHTGGG--TTSCCH-HHHHHHHHHHHHHT------TSCGGGEEEESHHHH
T ss_pred CCCCceEEccCCCCC----CCCCHHHHHHHHHHHhh--CcCCCC-CchHHHHHHHHHHh------CCChHHEEEeCChHH
Confidence 467889999999844 67889999999998874 456754 57889999999998 467889999999999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc--CCceEEEEeCCCCCcccc
Q 014603 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD--ENTVALVIINPGNPCGNV 199 (422)
Q Consensus 122 a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~p~nptG~~ 199 (422)
+++.++++++++||+|+++.|+|+++...++..|.+++.++.++ ++.+|++.|++.++ ++++++++++|+||||.+
T Consensus 80 a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~ 157 (354)
T 3ly1_A 80 GIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTI 157 (354)
T ss_dssp HHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCC
T ss_pred HHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCC
Confidence 99999999999999999999999999999999999999998753 46799999999998 789999999999999999
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC-CCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
++.+++.+|+++| ++|+++|+|++|+.+.+++.....+...+.. +++++++|+||.++++|+|+||++++
T Consensus 158 ~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-------- 228 (354)
T 3ly1_A 158 TPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-------- 228 (354)
T ss_dssp CCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC--------
T ss_pred cCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC--------
Confidence 9999999999999 8999999999999888766543333333444 67899999999998899999999985
Q ss_pred hhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcc
Q 014603 279 SGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYS 358 (422)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~ 358 (422)
+++.+.+...... .+++.+.+.++.++|+. ..++++.+++++++++.+.+.|+++ ++. + .+..+.|+|+.++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~-~~~~~~~~~~~~~~- 301 (354)
T 3ly1_A 229 PTVIALMGRYVAG-EKINFSGVDAALASMND--SAFITYSKKSNDVSRQILLKALEDL-KLP-Y-LPSEGNFVFHQLVV- 301 (354)
T ss_dssp HHHHHHHGGGTTC-SCCCHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCCCSSEEEEECSS-
T ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CCCCceEEEEECCC-
Confidence 5788888776654 57888999999999985 3778889999999999999999988 676 3 35567789998864
Q ss_pred cccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 359 LLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+..++...+. ++||.+. |..++.++++||+++ +++++++++++|++++++
T Consensus 302 ------~~~~~~~~l~-~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 302 ------PLKDYQTHMA-DAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp ------CHHHHHHHHH-HTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHH-HCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 4566766664 5799998 777667899999988 678999999999998864
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=335.50 Aligned_cols=334 Identities=15% Similarity=0.222 Sum_probs=281.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+.+++|+|+.+.+. +++++.+.+++.+.+.. ...|++..+ .++|+++++++ ++++++|++|+|++++
T Consensus 28 ~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~------~~~~~~v~~~~g~~~a 94 (365)
T 3get_A 28 GVKEVIKLASNENP----FGTPPKAIECLRQNANK--AHLYPDDSM-IELKSTLAQKY------KVQNENIIIGAGSDQV 94 (365)
T ss_dssp TCSCCEECSSCCCT----TCSCHHHHHHHHHHGGG--TTSCCCTTC-HHHHHHHHHHH------TCCGGGEEEESSHHHH
T ss_pred CCCceEEecCCCCC----CCCCHHHHHHHHHHHHh--hccCCCCCh-HHHHHHHHHHh------CCCcceEEECCCHHHH
Confidence 44789999999855 67889999999998864 457877665 89999999999 5678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
++.++.+++++||+|+++.|+|.++...++..|.+++.+++ +.+++ +|++.+++.++++++++++++|+||||.+++.
T Consensus 95 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~ 172 (365)
T 3get_A 95 IEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDA 172 (365)
T ss_dssp HHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCH
T ss_pred HHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCH
Confidence 99999999999999999999999999999999999999987 34567 99999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCC-ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~-~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
+++.+|+++| ++|+++|+|++|+.+.+ .+....+ ....+..+++++++|+||.++++|+|+||++++ +
T Consensus 173 ~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~--------~ 243 (365)
T 3get_A 173 SEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN--------A 243 (365)
T ss_dssp HHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC--------H
T ss_pred HHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC--------H
Confidence 9999999999 57999999999998774 3322222 222233456899999999999999999999985 5
Q ss_pred hHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc
Q 014603 280 GIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL 359 (422)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~ 359 (422)
++.+.+...... .+++.+.+.++.++|+. ..++++.+++++++++.+.+.|+++ ++. + .+..+.|+|+.++..
T Consensus 244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~-~~~~~~~~~~~~~~~- 316 (365)
T 3get_A 244 NIISAFYKLRAP-FNVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKH-NIK-I-IDSYTNFITYFFDEK- 316 (365)
T ss_dssp HHHHHHHHHSCT-TCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCCSSSEEEEECSSS-
T ss_pred HHHHHHHHhcCC-CCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhC-CCE-E-CCCCCeEEEEECCCC-
Confidence 788888776544 36888999999999985 4788999999999999999999998 776 4 355567889988742
Q ss_pred ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 360 LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
+..++...+ .++||.+.||..|+ .+++|++++ ++++++++++.|++++
T Consensus 317 -----~~~~~~~~l-~~~gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 -----NSTDLSEKL-LKKGIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp -----CHHHHHHHH-HTTTEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHH-HHCCEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 466776766 45699999999888 899999998 7889999999998875
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=340.03 Aligned_cols=368 Identities=17% Similarity=0.147 Sum_probs=284.4
Q ss_pred HhhccCccHHHHHHHHHhhhhccCCCCceeecCCCC-CCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHH
Q 014603 20 LKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDP-SAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIAD 98 (422)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~ 98 (422)
+...+++.+..+...+... ..+++|+|+.|.+ +.....+..+.+.+++.+.........|.+..|.+++|+++++
T Consensus 7 ~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 82 (401)
T 7aat_A 7 VEMGPPDPILGVTEAFKRD----TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAE 82 (401)
T ss_dssp CCCCCCCHHHHHHHHHHHC----CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHH
T ss_pred CCCCCCChhHHHHHHHhhC----CCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHH
Confidence 4556677787777666554 3566899999997 3212223456888988887764445689988899999999999
Q ss_pred HHhhcCCCCCCCCCEEE--ecCHHHHHHHHHHHhc---CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 99 YLNRDLPYKLSPDDVYL--TLGCTQAIEVILTVLA---RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 99 ~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l~---~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
++.+.+|..+++++|++ |+|++++++.++.++. ++||+|++++|+|.++...++..|.+++.++.++.+++.+|+
T Consensus 83 ~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 162 (401)
T 7aat_A 83 LALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF 162 (401)
T ss_dssp HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCH
Confidence 99877766677899987 9999999999887664 899999999999999999999999999999986555678999
Q ss_pred HHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCCCcccc-CCCCCe
Q 014603 174 DAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT--PFVPMGVF-GSIVPV 247 (422)
Q Consensus 174 ~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~-~~~~~~ 247 (422)
+.+++.+. ++++++++++||||||.+++.+++++|+++|+++|+++|+||+|..+.+++. ...++..+ ...+++
T Consensus 163 ~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (401)
T 7aat_A 163 TGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 242 (401)
T ss_dssp HHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcE
Confidence 97776654 5678899999999999999999999999999999999999999998877542 11122211 234578
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchh----HHHHHHhhhh-hccCcchHHHHHHHHHHhhch-----HHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG----IVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-----EEFFSK 317 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-----~~~~~~ 317 (422)
++++|+||.|+++|+|+||++++... ++ +...+..... .+.+++...+.++..++++.. ..++++
T Consensus 243 i~~~S~sK~~~~~G~RiG~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 317 (401)
T 7aat_A 243 VLSQSYAKNMGLYGERAGAFTVICRD-----AEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKG 317 (401)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECSS-----HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEecCCcccccccCceEEEEEEeCC-----HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999874221 23 3444444332 334666677777777776421 355778
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEE
Q 014603 318 ITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLR 394 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR 394 (422)
.+++++++++.+.+.|+++. ++. +..|.+++|.|+.++ .+.+..+++++||.+.|+ +|
T Consensus 318 ~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~ll~~~gi~v~~~--------~R 378 (401)
T 7aat_A 318 MADRIISMRTQLVSNLKKEGSSHNWQ-HITDQIGMFCFTGLK----------PEQVERLTKEFSIYMTKD--------GR 378 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCH-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTT--------CE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCc-eecCCcceEEecCCC----------HHHHHHHHHhCCEeccCC--------Ce
Confidence 88899999999999998872 354 336788999987653 334567778889999875 59
Q ss_pred EEec-cChHHHHHHHHHHHHHH
Q 014603 395 ITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 395 is~~-~~~~~l~~~~~~l~~~~ 415 (422)
+|++ .+++++++++++|++++
T Consensus 379 is~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 379 ISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp EEGGGCCTTTHHHHHHHHHHHH
T ss_pred EEeccCChhhHHHHHHHHHHHh
Confidence 9998 66677999999999876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=331.16 Aligned_cols=332 Identities=19% Similarity=0.298 Sum_probs=282.1
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCC-CCCCEEEecCHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKL-SPDDVYLTLGCTQA 122 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~~~~g~~~a 122 (422)
++++|+|+.|.+. +++++.+.+++.+.+.......|+. .+..++|+++++++ ++ ++++|++|+|++++
T Consensus 29 ~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~------g~~~~~~i~~~~g~t~a 97 (367)
T 3euc_A 29 SHGLVKLDAMENP----YRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVM------QVPAGMEVLLGNGSDEI 97 (367)
T ss_dssp CTTCEECCSSCCC----CCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHH------TCCTTCEEEEEEHHHHH
T ss_pred CCCeeEccCCCCC----CCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHh------CCCCcceEEEcCCHHHH
Confidence 5678999999844 6788999999999887533457866 47899999999999 44 67899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccC
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~ 201 (422)
++.++++++++||+|+++.|+|+++...++..|.+++.++.++ ++.+|++.|++.+++ +++++++++|+||||.+++
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 175 (367)
T 3euc_A 98 ISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFD 175 (367)
T ss_dssp HHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999998864 567899999999887 8999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 202 YQHLQKIAETAKKL--GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 202 ~~~l~~i~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
.+++++|+++|++| |+++|+|++|+.+...+ . ...++..++++++.|+||. +++|+|+||++++ +
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~--~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~--------~ 242 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--W--MSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGD--------P 242 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--S--GGGGGTCTTEEEEEECCCT-TSCSCCEEEEEEC--------H
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--h--HHHHhhCCCEEEEecchhh-cccccCceeeeeC--------H
Confidence 99999999999999 99999999999865332 1 2233444678999999999 9999999999985 5
Q ss_pred hHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc
Q 014603 280 GIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL 359 (422)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~ 359 (422)
++.+.+...... .+++.+.+.++..+|+. ..++++.+++++++++.+.+.|+++|++. . .|..+.|+|+.++
T Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~-~-~~~~~~~~~~~~~--- 314 (367)
T 3euc_A 243 QWLEQLDKVRPP-YNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVT-V-FPSAANFLLARVP--- 314 (367)
T ss_dssp HHHHHHGGGCCS-SCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCE-E-CCCSSSEEEEECS---
T ss_pred HHHHHHHHhCCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCCCCeEEEEECC---
Confidence 677877665543 46788999999999986 67789999999999999999999998887 4 5667889998886
Q ss_pred ccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 360 LEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
+..++...+ .++||.+.+|..|+. .+++||+++ +++++++++++|+++++
T Consensus 315 -----~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 -----DAAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp -----CHHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred -----CHHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 356666665 677999999987753 689999998 78899999999988763
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=341.57 Aligned_cols=372 Identities=16% Similarity=0.159 Sum_probs=292.7
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCC-CCCCCCCCcHHHHHHHHHHhhC-CCCCCCCCCCCCHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDP-SAFPSFRTASVAVDAIVHSVRS-ARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~i 96 (422)
++...+++.++.+.+...+. +++++|||+.|.+ +.....++++.+.+++.+.+.. .....|.+..+.+++|+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 8 EVPQAQPVLVFKLIADFRED----PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp TCCCCCCCHHHHHHHHHHTC----CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred hCcccCCchHHHHHHHHhhc----CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 67778888899988766543 4688999999986 3222235678999999988733 2345788888999999999
Q ss_pred HHHHhhcCCCCCCCCCEEE--ecCHHHHHHHHHH--HhcCCC-----CEEEecCCCccchHHHHhhCCCe-EEEeeccCC
Q 014603 97 ADYLNRDLPYKLSPDDVYL--TLGCTQAIEVILT--VLARPG-----ANILLPRPGFPYYEARATHSHLE-VRHFDLLPA 166 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~~--~l~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 166 (422)
++++...++..+++++|++ |+|+++|++.+++ .++.+| |+|+++.|+|+++...++..|.+ ++.++..++
T Consensus 84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 163 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence 9999654444457789999 9999999999964 446789 99999999999999999999999 999987544
Q ss_pred CCcccCHHHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCCCcccc
Q 014603 167 KGWEVDLDAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGN--TPFVPMGVF 241 (422)
Q Consensus 167 ~~~~~d~~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~--~~~~~~~~~ 241 (422)
+++.+|++.+++.+++ +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++ ....++..+
T Consensus 164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (412)
T 1ajs_A 164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence 5678999999988764 56777889999999999999999999999999999999999999887754 122233323
Q ss_pred C-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchh----HHHHHHhhh-hhccCcchHHHHHHHHHHhhch----
Q 014603 242 G-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG----IVDSIKSFL-NISSDPATFIQGAVPQILEKTE---- 311 (422)
Q Consensus 242 ~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~---- 311 (422)
. ..++++++.|+||.|+++|+|+||++++.+. ++ +++.+.... ..+.+++.+.+.++.++|+...
T Consensus 244 ~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 318 (412)
T 1ajs_A 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKE-----PDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHE 318 (412)
T ss_dssp HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHH
T ss_pred hccCCcEEEEEecccccCCCCcceEEEEEecCC-----HHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHH
Confidence 2 2356899999999998899999999982000 34 444454433 2334568899999999998642
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC
Q 014603 312 -EEFFSKITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 312 -~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
+.++++.+++++++++.+.+.|++++ ++. +..|.+|+|+|+.++ .+++..+++++||.+.|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v~~~--- 384 (412)
T 1ajs_A 319 WTGNVKTMADRILSMRSELRARLEALKTPGTWN-HITDQIGMFSFTGLN----------PKQVEYLINQKHIYLLPS--- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCH-HHHHCCSSEEECCCC----------HHHHHHHHHTTCEECCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCee-EEcCCCceEEEeCCC----------HHHHHHHHHhCCEEecCC---
Confidence 35788889999999999999999874 355 336778899887552 345566777889999875
Q ss_pred CCCCeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 388 GLKDWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 388 ~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
+||+++ .+++++++++++|+++++++
T Consensus 385 -----~Ris~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 385 -----GRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp -----SEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -----cEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 599999 58999999999999998763
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=338.92 Aligned_cols=372 Identities=15% Similarity=0.138 Sum_probs=289.9
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCC-CCCCCCCCcHHHHHHHHH-HhhCCCCCCCCCCCCCHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDP-SAFPSFRTASVAVDAIVH-SVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~~v~~a~~~-~~~~~~~~~y~~~~g~~~lr~ 94 (422)
.+++...+++.++.+...+.+. +++++|||+.|.+ +.....++++.+.+++.+ .+.......|.+..|.+++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~ 80 (412)
T 1yaa_A 5 FNNIELLPPDALFGIKQRYGQD----QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp TTTCCCCCCCTTHHHHHHHHTC----CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred hccCcccCCCcHHHHHHHHhcC----CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHH
Confidence 4567778888888888766544 4678999999986 211223567899999999 876444557888889999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEE--ecCHHHHHHHHH--HHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcc
Q 014603 95 AIADYLNRDLPYKLSPDDVYL--TLGCTQAIEVIL--TVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWE 170 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~--~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (422)
++++++...+|..+++++|++ |+|+++|+++++ ..++.+||+|+++.|+|+++...++..|.+++.++....+++.
T Consensus 81 ~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 160 (412)
T 1yaa_A 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCc
Confidence 999999765554456889999 999999999984 3445699999999999999999999999999999873223578
Q ss_pred cCHHHHHHhhcCC---ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCCCccccC-CC
Q 014603 171 VDLDAVEALADEN---TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGN--TPFVPMGVFG-SI 244 (422)
Q Consensus 171 ~d~~~l~~~~~~~---~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~--~~~~~~~~~~-~~ 244 (422)
+|++.|++.++++ +.++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++ ....++..+. ..
T Consensus 161 ~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T 1yaa_A 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcC
Confidence 9999999887643 4455559999999999999999999999999999999999999887654 1111222221 12
Q ss_pred C---CeEEEecCccccCCCCceeEEEE--e----eCCCCcccchh----HHHHHHhhh-hhccCcchHHHHHHHHHHhhc
Q 014603 245 V---PVLTLGSISKRWIVPGWRLGWLV--T----SDPNGILQDSG----IVDSIKSFL-NISSDPATFIQGAVPQILEKT 310 (422)
Q Consensus 245 ~---~~i~i~s~sK~~~~~G~r~G~~~--~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~ 310 (422)
+ ++++++|+||.|+++|+|+||++ + .+ ++ +++++.... ..+.+++.+.+.++.++|+..
T Consensus 241 ~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~ 313 (412)
T 1yaa_A 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQN-------KTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETP 313 (412)
T ss_dssp TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTH-------HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH
T ss_pred CCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCC-------HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCH
Confidence 3 68999999999988899999998 6 12 34 667766633 334466889999999999864
Q ss_pred h-----HHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe
Q 014603 311 E-----EEFFSKITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 382 (422)
Q Consensus 311 ~-----~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 382 (422)
. +.++++.+++++++++.+.+.|++++ ++. +..|.+|+++|+.++ ... +..+++++||.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~-~~~~l~~~gi~v~ 382 (412)
T 1yaa_A 314 ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWD-HIVNQCGMFSFTGLT---------PQM-VKRLEETHAVYLV 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCT-HHHHCCSSEEECCCC---------HHH-HHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCee-eeccCceEEEeeCCC---------HHH-HHHHHHhCCEEec
Confidence 2 35788889999999999999999874 366 346778888887552 333 4667777899998
Q ss_pred cCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 383 PGITVGLKDWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 383 ~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
+ ++||+++ .+++++++++++|+++++.+
T Consensus 383 ~--------~~Ris~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 383 A--------SGRASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp T--------TSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred c--------CcEEEEccCCHhHHHHHHHHHHHHHHhh
Confidence 7 4699998 48999999999999988753
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=335.61 Aligned_cols=384 Identities=19% Similarity=0.303 Sum_probs=292.1
Q ss_pred ccccHHHhhccC-ccHHHHHHHHHhhhhccCCCCce-eecCCCCCCCCCCCC--cHHHHHHHHHHhhC-------CC---
Q 014603 14 FKANEELKTASG-ITVRGVLNSLLENLNKNDTRPLI-PLGHGDPSAFPSFRT--ASVAVDAIVHSVRS-------AR--- 79 (422)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i-~l~~g~~~~~~~~~~--~~~v~~a~~~~~~~-------~~--- 79 (422)
+++|.+.+++.. +.++.++..+.+.. ..+++| +|++|.|.. ++ .+.+.+++.+.+.+ ..
T Consensus 2 ~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~g~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (444)
T 3if2_A 2 MKFSKFGQKFTQPTGISQLMDDLGDAL---KSDQPVNMLGGGNPAK----IDAVNELFLETYKALGNDNDTGKANSSAII 74 (444)
T ss_dssp CCCCHHHHHHHSCCHHHHHHHHHHHHH---HSSSCCEECSCCCCCC----CHHHHHHHHHHHHHHHSCSCTTCCCCHHHH
T ss_pred CCcchhhhhccCchhHHHHHHHHHhhh---cCchhhhccCCCCCCc----ccchHHHHHHHHHHHHhccccccccchhhh
Confidence 455656655544 56888887666554 347899 999998762 22 25566666666554 21
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCC--------------EEEec-CCC
Q 014603 80 -FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGA--------------NILLP-RPG 143 (422)
Q Consensus 80 -~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd--------------~Vl~~-~~~ 143 (422)
...|.+..|.+++|+++++++.+.+|+++++++|++|+|+++|++.++++++++|| +|+++ .|+
T Consensus 75 ~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~ 154 (444)
T 3if2_A 75 SMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPE 154 (444)
T ss_dssp HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSC
T ss_pred hhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCC
Confidence 24688888999999999999998888889999999999999999999999998888 78775 999
Q ss_pred ccchHHH------HhhCCCeEEEeeccCCC---CcccCHHHHHHh---hcCCceEEEEeCCCCCcccccCHHHHHHHHHH
Q 014603 144 FPYYEAR------ATHSHLEVRHFDLLPAK---GWEVDLDAVEAL---ADENTVALVIINPGNPCGNVYTYQHLQKIAET 211 (422)
Q Consensus 144 ~~~~~~~------~~~~g~~~~~~~~~~~~---~~~~d~~~l~~~---~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~ 211 (422)
|+.+... ....+..++.++.+.++ ++.+|++.|++. +.++++++++++|+||||.++|.+++++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~ 234 (444)
T 3if2_A 155 YIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEI 234 (444)
T ss_dssp CGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred ccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHH
Confidence 9988653 33456677777765322 357899999987 67789999999999999999999999999999
Q ss_pred HHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-
Q 014603 212 AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN- 290 (422)
Q Consensus 212 ~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (422)
|+++|+++|+||+|+.+.. +....... ....++++++.|+||+ +++|+|+||++++ +++.+.+.....
T Consensus 235 a~~~~~~li~De~~~~~~~-~~~~~~~~-~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~--------~~l~~~~~~~~~~ 303 (444)
T 3if2_A 235 AKRYDIPLIIDNAYGMPFP-NIIYSDAH-LNWDNNTILCFSLSKI-GLPGMRTGIIVAD--------AKVIEAVSAMNAV 303 (444)
T ss_dssp HHHTTCCEEEECTTCTTTT-CCBCSCCC-CCCCTTEEEEEESTTT-TCGGGCCEEEECC--------HHHHHHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCccc-cccccccc-ccCCCCEEEEechhhc-cCCCCceEEEEEC--------HHHHHHHHHHHHh
Confidence 9999999999999975321 11111111 1223568999999997 8999999999985 568888876654
Q ss_pred hccCcchHHHHHHHHHHhhch-HHHHHH-HHHHHHHHHHHHHHHhhc-CCC--CCCCCCCCCceEEEEecCcccccCCCC
Q 014603 291 ISSDPATFIQGAVPQILEKTE-EEFFSK-ITDILRETADICCDRLKE-IPC--ITCPKKPEGSMFVMVKLNYSLLEGINS 365 (422)
Q Consensus 291 ~~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~-~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~ 365 (422)
...+++++.+.++..+++... .....+ .++.++++++.+.+.|++ +++ +. +..|.+++++|+.++... .+
T Consensus 304 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~~~~~~~~~~~----~~ 378 (444)
T 3if2_A 304 VNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLM-IHKPEGAIFLWLWFKDLP----IS 378 (444)
T ss_dssp HHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEE-EECCCBSSEEEEEETTCS----SC
T ss_pred ccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCce-EecCCccEEEEEEcCCCC----CC
Confidence 345778899999999888643 233333 667788888888888776 454 34 336788999999887411 25
Q ss_pred HHHHHHHHHHhcCeEEecCCCCCC----------CCeEEEEeccChHHHHHHHHHHHHHHHHhccc
Q 014603 366 DMEFALKLAKEESVIVLPGITVGL----------KDWLRITFAVEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 366 ~~~~~~~l~~~~gi~v~~g~~~~~----------~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
..++...+ .++||.+.||..|.. .+++||+++.++++|++++++|.++++++.+.
T Consensus 379 ~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~~ 443 (444)
T 3if2_A 379 TLDLYERL-KAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELYDN 443 (444)
T ss_dssp HHHHHHHH-HHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHcc
Confidence 66776665 677999999998854 26899999989999999999999999887643
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=328.83 Aligned_cols=326 Identities=22% Similarity=0.371 Sum_probs=275.6
Q ss_pred HHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH
Q 014603 70 AIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA 149 (422)
Q Consensus 70 a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~ 149 (422)
++.+.+... ...|++..|.+++|+++++++. ++++++|++|+|+++|+..++++++++||+|+++.|+|+++..
T Consensus 47 ~~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~ 120 (375)
T 3op7_A 47 DFYKKLQGT-KLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD 120 (375)
T ss_dssp HHHHHHHTS-CCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH
T ss_pred HHHHHHhcC-CcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH
Confidence 444444443 3478888899999999999873 3578899999999999999999999999999999999999999
Q ss_pred HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 014603 150 RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA 229 (422)
Q Consensus 150 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~ 229 (422)
.+...|.+++.+++++++++.+|++.|++.++++++++++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~ 200 (375)
T 3op7_A 121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFS 200 (375)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCS
T ss_pred HHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 99999999999998766678899999999998899999999999999999999999999999999999999999999877
Q ss_pred cCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHh
Q 014603 230 FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILE 308 (422)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~ 308 (422)
+++ ...+. +..++++++.|+||.++++|+|+||++++ +++++.+...... ..+++++.+.++..+++
T Consensus 201 ~~~--~~~~~--~~~~~~i~~~s~sK~~~~~G~r~G~v~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (375)
T 3op7_A 201 ELD--VPSII--EVYDKGIAVNSLSKTYSLPGIRIGWVAAN--------HQVTDILRDYRDYTMICAGVFDDLVAQLALA 268 (375)
T ss_dssp SSC--CCCHH--HHCTTEEEEEESSSSSSCGGGCCEEEECC--------HHHHHHHTTTGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccC--CCchh--hhcCCEEEEeEChhhcCCcccceEEEEeC--------HHHHHHHHHHHhhhccCCCcHHHHHHHHHHh
Confidence 652 22222 22356799999999998899999999985 5788888776643 44667888888888887
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC
Q 014603 309 KTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388 (422)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 388 (422)
. .+.++++.++.++++++.+.+.|++++++. +..|.++++.|+.++.. .+..+++..+++++||.+.||..|+
T Consensus 269 ~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~~g~~~~ 341 (375)
T 3op7_A 269 H-YQEILERNRHILEENLAILDQWIEEEPLVS-YIRPAVVSTSFVKIAVD-----MPMEDFCLQLLQEHGVLLVPGNRFE 341 (375)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEE-ECCCSSSSCEEEEECCS-----SCHHHHHHHHHHHHCEECEEGGGGT
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHhhCCCce-EecCCCeEEEeEEcCCC-----CCHHHHHHHHHHhCCEEEeChhhhC
Confidence 4 456788888899999999999999988887 44788888888887642 2567788888778899999999988
Q ss_pred CCCeEEEEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 389 LKDWLRITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 389 ~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
..+++|++++.+.+++++++++|.++++++.+
T Consensus 342 ~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 342 RDGYVRLGFACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp CTTEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 88999999998779999999999999988754
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=324.15 Aligned_cols=322 Identities=18% Similarity=0.306 Sum_probs=264.0
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
.++|||+.|.+. +++++.+ + + ...+.|++. +.+++|+++++++ ++++++|++|+|++++++
T Consensus 29 ~~~i~l~~~~~~----~~~~~~v--a----~--~~~~~Y~~~-~~~~lr~~la~~~------~~~~~~v~~~~G~~~ai~ 89 (356)
T 1fg7_A 29 NGDVWLNANEYP----TAVEFQL--T----Q--QTLNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEGIE 89 (356)
T ss_dssp TCSEECSSCCCS----SCCCCCC--C----C--CCTTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHHHH
T ss_pred CceEEeeCCCCC----CCCCHhH--h----h--hhhccCCCc-cHHHHHHHHHHHh------CCChHHEEEcCCHHHHHH
Confidence 468999999854 4555555 1 2 134688775 4899999999999 567889999999999999
Q ss_pred HHHHHhcCCC-CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 125 VILTVLARPG-ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l~~~g-d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
.++++++++| |+|+++.|+|+++...++..|.+++.++.+ +++.+|++.+++.++ +++++++++|+||||.++|.+
T Consensus 90 ~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~ 166 (356)
T 1fg7_A 90 LLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQ 166 (356)
T ss_dssp HHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHH
T ss_pred HHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHH
Confidence 9999999999 999999999999999999999999888875 356789999999887 889999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
++++|+++|+ +|+++|+||+|..+.. + .++..+ +..++++++.|+||.|+++|+|+||++++ ++++
T Consensus 167 ~l~~l~~~~~-~~~~li~De~~~~~~~-~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~~~ 233 (356)
T 1fg7_A 167 DFRTLLELTR-GKAIVVADEAYIEFCP-Q---ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN--------EEVI 233 (356)
T ss_dssp HHHHHHHHHT-TTCEEEEECTTGGGSG-G---GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC--------HHHH
T ss_pred HHHHHHHhCC-CCCEEEEEccchhhcC-C---CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeC--------HHHH
Confidence 9999999999 9999999999997652 1 122222 33456899999999998999999999985 5778
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+......+ +++.+.|.++.++|+.....++++.+++++++++.+.+.|++++++. ...|..++|+|++++
T Consensus 234 ~~l~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~------ 305 (356)
T 1fg7_A 234 NLLMKVIAPY-PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVE-QVFDSETNYILARFK------ 305 (356)
T ss_dssp HHHHHHSCSS-CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EECCCSSSEEEEEET------
T ss_pred HHHHHhcCCC-CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCce-EECCCCCeEEEEECC------
Confidence 8777655433 67889999999999763223488889999999999999999986543 225677889999885
Q ss_pred CCCHHHHHHHHHHhcCeEEec-CCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLP-GITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~-g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
+..++...+ .++||.+.+ |..|+..+++||++++ ++++++++++|++
T Consensus 306 --~~~~l~~~L-~~~gI~v~~~g~~~~~~~~iRis~~~-~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 306 --ASSAVFKSL-WDQGIILRDQNKQPSLSGCLRITVGT-REESQRVIDALRA 353 (356)
T ss_dssp --THHHHHHHH-HHTTEECEECTTSTTCTTEEEEECCC-HHHHHHHHHHHHT
T ss_pred --CHHHHHHHH-HHCCEEEEECCCCCCCCCeEEEEeCC-HHHHHHHHHHHHh
Confidence 356677766 677999999 8888877899999984 6899999988865
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=333.60 Aligned_cols=375 Identities=15% Similarity=0.122 Sum_probs=288.7
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCC-CCCCCcHHHHHHHHHHh--hCCCCCCCCCCCCCHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAF-PSFRTASVAVDAIVHSV--RSARFNCYSSTVGILPAR 93 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~-~~~~~~~~v~~a~~~~~--~~~~~~~y~~~~g~~~lr 93 (422)
..++...+++.|..+...+.+. ..+.+|||+.|.+.+. ...+..+.+.+++.+.. .......|.+..|.+++|
T Consensus 25 ~~~~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr 100 (448)
T 3meb_A 25 FSGFPASPPDAILNLTVLYNAD----TNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFL 100 (448)
T ss_dssp TTTCCCCCCCTTHHHHHHHHHC----CCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHH
T ss_pred HhcCCCCCCChHHHHHHHHHhC----CCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHH
Confidence 3467778888899988777654 3455799999997332 22345678888866655 223455898889999999
Q ss_pred HHHHHHHhhcCCCC---CCCCCEEE--ecCHHHHHHH--HHHHhcCCCCEEEecCCCccchHHHHh----hCCCeEEEee
Q 014603 94 RAIADYLNRDLPYK---LSPDDVYL--TLGCTQAIEV--ILTVLARPGANILLPRPGFPYYEARAT----HSHLEVRHFD 162 (422)
Q Consensus 94 ~~ia~~l~~~~~~~---~~~~~i~~--~~g~~~a~~~--~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~ 162 (422)
+++++++. |.. +++++|++ |+|+++|++. .+.+++.+||+|++++|+|.++...++ ..|.+++.++
T Consensus 101 ~~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~ 177 (448)
T 3meb_A 101 EAAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYT 177 (448)
T ss_dssp HHHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEEC
T ss_pred HHHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEe
Confidence 99999983 212 12689999 9999999988 455677899999999999999999999 8999999999
Q ss_pred ccCCC-CcccCHHHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCC
Q 014603 163 LLPAK-GWEVDLDAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT--PFV 236 (422)
Q Consensus 163 ~~~~~-~~~~d~~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~--~~~ 236 (422)
..+.+ ++.+|++.+++.++ ++++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++. ...
T Consensus 178 ~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~ 257 (448)
T 3meb_A 178 YLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAF 257 (448)
T ss_dssp CBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTH
T ss_pred ccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCch
Confidence 84444 67899999999886 3577888899999999999999999999999999999999999998877541 111
Q ss_pred Ccccc-CCCCCeEEEecCccccCCCCceeEEE--Ee--------eCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHH
Q 014603 237 PMGVF-GSIVPVLTLGSISKRWIVPGWRLGWL--VT--------SDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVP 304 (422)
Q Consensus 237 ~~~~~-~~~~~~i~i~s~sK~~~~~G~r~G~~--~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~ 304 (422)
.+..+ ...++++++.|+||.|+++|+|+||+ ++ +++. . .+++.+.+.... ..+.+++.+.+.++.
T Consensus 258 ~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~-~--~~~l~~~l~~~~~~~~~~~~~~~~~a~~ 334 (448)
T 3meb_A 258 AVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKA-L--SAAMVSGMTLQIRKTWSMSAIHGAYIVQ 334 (448)
T ss_dssp HHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHH-H--HHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred hHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHH-H--HHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 22222 22356899999999999999999998 65 3210 0 014555555543 334577788999999
Q ss_pred HHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhcC--CC------CCCCCCCCCceEEEEecCcccccCCCCHHHHHH
Q 014603 305 QILEKTE-----EEFFSKITDILRETADICCDRLKEI--PC------ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFAL 371 (422)
Q Consensus 305 ~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~--~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (422)
.+|.... ...+++.+++++++++.+.+.|+++ ++ +. ...|.+++|.|+.++ .+++.
T Consensus 335 ~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~----------~~~~~ 403 (448)
T 3meb_A 335 VIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWD-HILTAIGMFTFTGLT----------PEHVD 403 (448)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCT-HHHHCCSSEEECCCC----------HHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccc-eeCCCceEEEecCCC----------HHHHH
Confidence 8887632 1447888899999999999999987 55 54 336788999997663 35667
Q ss_pred HHHHhcCeEEecCCCCCCCCeEEEEecc-ChHHHHHHHHHHHHHHHHhc
Q 014603 372 KLAKEESVIVLPGITVGLKDWLRITFAV-EPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 372 ~l~~~~gi~v~~g~~~~~~~~iRis~~~-~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+++++||.+.||. .|||++. +++++++++++|.+++++..
T Consensus 404 ~ll~~~gV~v~~G~-------gRis~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 404 YLKEKWSIYLVKAG-------GRMSMCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp HHHHHHCEEECSGG-------GEEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCEEEeCCC-------cEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 77788899999975 2999984 88889999999999998654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=321.40 Aligned_cols=334 Identities=18% Similarity=0.264 Sum_probs=271.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+++++|||+.|.+. +++++.+.+++.+++.. ...|+. .+..++|+++++++ ++++++|++|+|++++
T Consensus 24 ~~~~~idl~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~i~~~~g~t~a 90 (361)
T 3ftb_A 24 KGRELLDYSSNINP----LGIPKSFLNNIDEGIKN--LGVYPD-VNYRRLNKSIENYL------KLKDIGIVLGNGASEI 90 (361)
T ss_dssp ----CEETTCCCCT----TCSCHHHHTTHHHHHHG--GGSCCC-TTCHHHHHHHHHHH------TCCSCEEEEESSHHHH
T ss_pred CCCCEEEecCCCCC----CCCCHHHHHHHHHHHHH--hcCCCC-ccHHHHHHHHHHHh------CCCcceEEEcCCHHHH
Confidence 57889999999854 57789999999998875 346744 67899999999999 5678999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
++.++.++ |+|+++.|+|+++...++..|.+++.++.++.+ .++++.+++.+++ ++++++++|+||||.++|.
T Consensus 91 l~~~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~ 163 (361)
T 3ftb_A 91 IELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENM--CIDYEDIISKIDD-VDSVIIGNPNNPNGGLINK 163 (361)
T ss_dssp HHHHHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCH
T ss_pred HHHHHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCccc--CCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCH
Confidence 99999888 899999999999999999999999999986543 4677999999987 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++++|+++|+++|+++|+||+|+.+.++ ............++++++.|+||.++++|+|+||+++.+ +++.
T Consensus 164 ~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~-------~~~~ 235 (361)
T 3ftb_A 164 EKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNN-------KEIA 235 (361)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESC-------HHHH
T ss_pred HHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCC-------HHHH
Confidence 99999999999999999999999988775 323333333445678999999999988999999998432 5788
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+...... .+++++.+.++.++|+. ..++++.+++++++++.+.+.|+++|++... .+..+.++|+.++.
T Consensus 236 ~~~~~~~~~-~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~----- 306 (361)
T 3ftb_A 236 AKIKAKQNP-WNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRV-FSPHANFVLCRLEN----- 306 (361)
T ss_dssp HHHHTTSCT-TCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEE-ECCSSSEEEEEESS-----
T ss_pred HHHHhhCCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCcee-cCCCCeEEEEEcCC-----
Confidence 887765543 47788999999999985 5788999999999999999999998877512 34456788888864
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
.+..++...+.+ +||.+.||..|+. ++++|++++ +.++++++++.|+++.+
T Consensus 307 -~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 307 -ISGEKLYDSLLK-EDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -SCHHHHHHHHHT-TTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH-CCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 156777777755 5999999998864 689999998 44566666666665543
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=332.98 Aligned_cols=372 Identities=20% Similarity=0.270 Sum_probs=273.3
Q ss_pred CccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC----CCCCCCCCCCHHHHHHHHHHH
Q 014603 25 GITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR----FNCYSSTVGILPARRAIADYL 100 (422)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~----~~~y~~~~g~~~lr~~ia~~l 100 (422)
++.++..+..+... ..++++|+|+.|.|.. ..++.+.+.+++.+.+.+.. ...|++..|.+++|+++++++
T Consensus 14 ~~~~~~~~~~~~~~---~~~~~~i~l~~g~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~ 88 (417)
T 3g7q_A 14 HSGITRLMEDLNDG---LRTPGAIMLGGGNPAH--IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLL 88 (417)
T ss_dssp --CHHHHHHHHHC--------CCEECSCCCCCC--CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhh---ccCCCceEecCcCCCC--CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHH
Confidence 34566655544333 2457899999998762 10112567777777664421 137988889999999999999
Q ss_pred hhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCC-----EEEec-CCCccchHHHHhhC----CCeEEEeeccCC-CCc
Q 014603 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGA-----NILLP-RPGFPYYEARATHS----HLEVRHFDLLPA-KGW 169 (422)
Q Consensus 101 ~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd-----~Vl~~-~~~~~~~~~~~~~~----g~~~~~~~~~~~-~~~ 169 (422)
.+.+|+++++++|++|+|+++|++.++++++++|| +|+++ .|+|+++...+... +..+...++... .++
T Consensus 89 ~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (417)
T 3g7q_A 89 RETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKY 168 (417)
T ss_dssp HHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEE
T ss_pred HHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCccccc
Confidence 98888889999999999999999999999999987 89997 99999887655322 222233333221 145
Q ss_pred ccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 170 EVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 170 ~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
.+|++.++ ++++++++++++|+||||.+++.+++++|+++|++||+++|+||+|+.+.. +....... ....+++++
T Consensus 169 ~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~-~~~~~~~~-~~~~~~~i~ 244 (417)
T 3g7q_A 169 HVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP-GIIFSEAR-PLWNPNIIL 244 (417)
T ss_dssp ECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT-CCBCSCCC-CCCCTTEEE
T ss_pred ccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc-cccccccc-cCCCCCEEE
Confidence 68988887 677899999999999999999999999999999999999999999975321 11111111 122356899
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHH-HHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSK-ITDILRETA 326 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~-~~~~~~~~~ 326 (422)
+.|+||+ +++|+|+||++++ +++++++..... ...+++++.+.++..+++... .....+ .++++++++
T Consensus 245 ~~s~sK~-~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 315 (417)
T 3g7q_A 245 CMSLSKL-GLPGSRCGIIIAN--------DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRV 315 (417)
T ss_dssp EEESGGG-TCTTSCCEEEECC--------HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHH
T ss_pred EEechhc-cCCCcceEEEEeC--------HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 9999994 9999999999985 578888877664 345678899999999987643 233333 667788888
Q ss_pred HHHHHHhhc-CCC--CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---------CCeEE
Q 014603 327 DICCDRLKE-IPC--ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KDWLR 394 (422)
Q Consensus 327 ~~l~~~L~~-~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---------~~~iR 394 (422)
+.+.+.|++ +++ +. +..|.+|+++|+.++... .+..++...+ .++||.+.||..|.. .+++|
T Consensus 316 ~~~~~~l~~~l~~~~~~-~~~~~~g~~~~~~~~~~~----~~~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iR 389 (417)
T 3g7q_A 316 QQTIAIIRRYLSEERCL-IHKPEGAIFLWLWFKDLP----ITTELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMR 389 (417)
T ss_dssp HHHHHHHHHHCCTTTCE-EECCCBSSEEEEECTTCS----SCHHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEE
T ss_pred HHHHHHHHHhcccCCce-eeCCCcceEEEEEcCCCC----CCHHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEE
Confidence 888888876 554 44 446888999999987421 1566776666 677999999988754 46899
Q ss_pred EEeccChHHHHHHHHHHHHHHHHhcc
Q 014603 395 ITFAVEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 395 is~~~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
||++.+++++++++++|.++++++.+
T Consensus 390 is~~~~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 390 MNYVPEPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp EESCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988754
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=321.93 Aligned_cols=336 Identities=19% Similarity=0.289 Sum_probs=270.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++.++|||+.|.+. +++++.+.+++.+++.. ...|+. .+..++|+++++++ ++++++|++|+|++++
T Consensus 22 ~~~~~idl~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~-~~~~~l~~~la~~~------~~~~~~v~~~~g~~~a 88 (364)
T 1lc5_A 22 SPDQLLDFSANINP----LGMPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHH------QVPASWILAGNGETES 88 (364)
T ss_dssp CGGGSEECSSCCCT----TCCCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHH
T ss_pred CccceEEeccccCC----CCCCHHHHHHHHHHHHH--hhcCCC-CCHHHHHHHHHHHH------CcCHHHEEECCCHHHH
Confidence 45679999999844 46789999999998754 346765 47899999999999 5677899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
++.+++++ +||+|+++.|+|+++...++..|.+++.++.++++++.+ ++.+.+.++++++++++++|+||||.++|.
T Consensus 89 l~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~ 165 (364)
T 1lc5_A 89 IFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPER 165 (364)
T ss_dssp HHHHHHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCH
T ss_pred HHHHHHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCH
Confidence 99999998 679999999999999999999999999998765334433 565666666678889999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE-eeCCCCcccchhH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV-TSDPNGILQDSGI 281 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~-~~~~~~~~~~~~~ 281 (422)
+++++|+++|+++|+++|+||+|+.+.+++... +...+..++++++.|+||.++++|+|+||++ ++ +++
T Consensus 166 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~--------~~~ 235 (364)
T 1lc5_A 166 PLLQAIADRCKSLNINLILDEAFIDFIPHETGF--IPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD--------DAA 235 (364)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCS--GGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC--------HHH
T ss_pred HHHHHHHHHhhhcCcEEEEECcChhhccCccch--hhHhccCCCEEEEEECchhhcCCccceEEEEECC--------HHH
Confidence 999999999999999999999999877653222 2222334568999999999988999999999 64 567
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++.+..... +.+++.+.+.++.++|+. ..++++.+++++++++.+.+.|+++|++. + .+..|.|+|+.++.
T Consensus 236 ~~~l~~~~~-~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~~g~~~~~~~~~---- 306 (364)
T 1lc5_A 236 MARMRRQQM-PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLT-V-YPGRANYLLLRCER---- 306 (364)
T ss_dssp HHHHHHHSC-TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CCCSSSEEEEEESC----
T ss_pred HHHHHHhCC-CCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCE-E-CCCCCeEEEEECCC----
Confidence 777776553 347788999999999986 46788899999999999999999988877 4 34557788888763
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
+..++...+. ++||.+.||..|+. .+++||++++ .++++++++.|+++++++
T Consensus 307 ---~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 307 ---EDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIRS-AAQNERLLAALRNVLTGI 360 (364)
T ss_dssp ---TTCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHC---
T ss_pred ---cHHHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhhcc
Confidence 2334566664 56999999988753 5799999874 678888888888887664
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=336.14 Aligned_cols=365 Identities=15% Similarity=0.151 Sum_probs=273.6
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI 96 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i 96 (422)
..++...+++.+..+...+.+. ..+++|||+.|++.+ ++.++.+.+++.++. ......|.+..|.+++|+++
T Consensus 17 ~~~~~~~~~~~i~~~~~~~~~~----~~~~~i~l~~g~~~d---~~~~~~v~~a~~~a~-~~~~~~y~~~~g~~~lr~~i 88 (409)
T 4eu1_A 17 QGPGSMGKPDPILGLGQDFRMD----PAKRKVNLSIGVYRD---DADQPFVLECVKQAT-LGTNMDYAPVTGIASFVEEA 88 (409)
T ss_dssp ----------CHHHHHHHHHHC----CCSSCEECCCSSCCC---TTSCCCCCHHHHTCC-CCSCCCCCCTTCCHHHHHHH
T ss_pred hhcCCCCCCChHHHHHHHHhhC----CCcCceeeeeeEEEC---CCCCEeecHHHHhcC-ccccccCCCCCCcHHHHHHH
Confidence 3478888888888888777655 457899999999632 344555667776663 33456898889999999999
Q ss_pred HHHHhhcCCCCCCCCCEE--EecCHHHHHHHHH---HHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 97 ADYLNRDLPYKLSPDDVY--LTLGCTQAIEVIL---TVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~--~~~g~~~a~~~~~---~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
++++....+..+++++|. .+.|++++++.+. ++++++||+|++++|+|.++...++..|.+++.+++.+++++.+
T Consensus 89 a~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (409)
T 4eu1_A 89 QKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGL 168 (409)
T ss_dssp HHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEE
T ss_pred HHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcC
Confidence 999853211112267884 4899999998764 45678999999999999999999999999999999865567889
Q ss_pred CHHHHHHhhc---CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCCCcccc-CCCC
Q 014603 172 DLDAVEALAD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT--PFVPMGVF-GSIV 245 (422)
Q Consensus 172 d~~~l~~~~~---~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~--~~~~~~~~-~~~~ 245 (422)
|++.|++.++ +.++++++++|+||||.+++.+++++|+++|+++|+++|+||+|+.+.+++. ...++..+ +..+
T Consensus 169 d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (409)
T 4eu1_A 169 NLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP 248 (409)
T ss_dssp CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred cHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence 9999999885 3456667799999999999999999999999999999999999999887652 11122222 3345
Q ss_pred CeEEEecCccccCCCCceeEEE--EeeCCCCcccchh----HHHHHHhhh-hhccCcchHHHHHHHHHHhhch-----HH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWL--VTSDPNGILQDSG----IVDSIKSFL-NISSDPATFIQGAVPQILEKTE-----EE 313 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~--~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-----~~ 313 (422)
++++++|+||.|+++|+|+||+ ++++ ++ +.+.+.... ..+.+++.+.|.++..+|+... ..
T Consensus 249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (409)
T 4eu1_A 249 NLIVAQSFSKNFGLYGHRCGALHISTAS-------AEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKK 321 (409)
T ss_dssp CCEEEEECTTTSSCGGGCCEEEEEECSS-------HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cEEEEecCcccccCccCCceEEEEEeCC-------HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence 7899999999999999999997 5543 34 556665544 3345677899999998888532 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--C-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIP--C-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 390 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 390 (422)
.+++.+++++++++.+.+.|++++ + +. +..|.+++|.|+.++ .+++..+++++||.+.||.
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~ll~~~gv~v~p~~----- 385 (409)
T 4eu1_A 322 ELKQMSSRIAEVRKRLVSELKACGSVHDWS-HIERQVGMMAYTGLT----------REQVELLRSEYHIYMTLNG----- 385 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSCCH-HHHHSCSSEEECCCC----------HHHHHHHHHHHCEECCTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-eecCCceEEEEeCCC----------HHHHHHHHHcCCEEEcCCC-----
Confidence 577888999999999999999872 1 55 336788899986553 3456777778899999863
Q ss_pred CeEEEEec-cChHHHHHHHHHHHHHH
Q 014603 391 DWLRITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 391 ~~iRis~~-~~~~~l~~~~~~l~~~~ 415 (422)
||+++ .+++++++++++|++++
T Consensus 386 ---Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 386 ---RAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ---EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred ---EEEEEecCHhhHHHHHHHHHHHh
Confidence 99998 67788999999998875
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-43 Score=334.36 Aligned_cols=348 Identities=19% Similarity=0.187 Sum_probs=274.2
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhh--CC-CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVR--SA-RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~--~~-~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+|+|+.|.|.. ..+++++.+.+++.+.+. .. ....|++..|.+++|+++++++ ++++++|++|+|++++
T Consensus 33 ~~i~l~~g~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~------~~~~~~i~~t~G~~~a 105 (422)
T 3d6k_A 33 LSLDLTRGKPSA-EQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL------GLPADLVVAQDGSSLN 105 (422)
T ss_dssp CCEECCCCSCCH-HHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH------TCCGGGEEECSSCHHH
T ss_pred CeEeCCCCCCCh-hhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh------CCChhHEEEecchHHH
Confidence 489999999641 014666678887766531 22 3568999899999999999999 5688999999999999
Q ss_pred H--HHHHHHhcCC------------CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEE
Q 014603 123 I--EVILTVLARP------------GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVAL 187 (422)
Q Consensus 123 ~--~~~~~~l~~~------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i 187 (422)
+ .++++++..+ +|+|++++|+|+++...++..|.+++.++.+++ ++|++.|++.+++ +++++
T Consensus 106 l~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~v 182 (422)
T 3d6k_A 106 IMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGM 182 (422)
T ss_dssp HHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcCCCeEE
Confidence 7 6777877655 358999999999999999999999999998642 4899999998875 67887
Q ss_pred E-EeCCCCCcccccCHHHHHHHHHHHH-HcCcEEEEcccccc--cccCCCCCCCccc----cCCCCCeEEEecCccccCC
Q 014603 188 V-IINPGNPCGNVYTYQHLQKIAETAK-KLGIMVIADEVYDH--LAFGNTPFVPMGV----FGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 188 ~-i~~p~nptG~~~~~~~l~~i~~~~~-~~~~~li~D~~~~~--~~~~~~~~~~~~~----~~~~~~~i~i~s~sK~~~~ 259 (422)
+ +++|+||||.+++.+++++|+++|+ ++|++||+||+|.. +.+++....++.. .+..+++++++||||+ ++
T Consensus 183 ~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~ 261 (422)
T 3d6k_A 183 WTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-TH 261 (422)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SC
T ss_pred EEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cC
Confidence 7 6899999999999999999999999 99999999999985 4333322333311 2344678999999999 89
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhc-
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDRLKE- 335 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~- 335 (422)
+|+|+||++++ +++++.+..... .+.+++.+.|.++.++|+... +.++++.++.++++++.+.+.|++
T Consensus 262 ~GlriG~~~~~--------~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (422)
T 3d6k_A 262 AGSGVSFFASS--------KENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSR 333 (422)
T ss_dssp TTSSCEEEECC--------HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEeC--------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986 568888877654 345778899999999998622 467788888888888888888765
Q ss_pred ---CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec-CCCCC-----CCCeEEEEec-cChHHHH
Q 014603 336 ---IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVG-----LKDWLRITFA-VEPSALE 405 (422)
Q Consensus 336 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~~~-----~~~~iRis~~-~~~~~l~ 405 (422)
++++. +..|.+|+|+|+.++.. +..++. .+++++||.+.| |..|. ..+++|||++ +++++++
T Consensus 334 l~~~~~~~-~~~p~~g~~~~~~~~~~------~~~~~~-~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~ 405 (422)
T 3d6k_A 334 LSEYGVAK-WTSPTGGYFISVDVVPG------TASRVV-ELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELE 405 (422)
T ss_dssp HGGGTCEE-ECCCSBSSCEEEEESTT------CHHHHH-HHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHH
T ss_pred cCcCCceE-EeCCCcceEEEEECCCC------CHHHHH-HHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHH
Confidence 33344 34788899999999742 344444 456778999999 55563 2589999999 7999999
Q ss_pred HHHHHHHHHHHHhcc
Q 014603 406 DGLGRMKAFYDRHAK 420 (422)
Q Consensus 406 ~~~~~l~~~~~~~~~ 420 (422)
+++++|+++++++.+
T Consensus 406 ~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 406 VAMDGFATCVLMAAL 420 (422)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987643
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=336.78 Aligned_cols=350 Identities=17% Similarity=0.145 Sum_probs=277.1
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHH--HHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAI--VHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~--~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
....|||+.|.|.. ..++.++.+.+++ .+.+... ....|++..|.+++|+++++++ ++++++|++|+|+
T Consensus 32 ~~~~i~~~~G~p~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G~ 104 (427)
T 3ppl_A 32 KNLKLDLTRGKPSS-EQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDAS 104 (427)
T ss_dssp TCCCEECCCCSCCH-HHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH------TSCGGGEEECSSC
T ss_pred CCceEecCCCCCCh-HHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh------CCCcceEEEeCCc
Confidence 45679999999762 1122333566665 4444332 3468998889999999999999 5688999999999
Q ss_pred HHHH--HHHHHHhcC--C----------CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-CCc
Q 014603 120 TQAI--EVILTVLAR--P----------GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-ENT 184 (422)
Q Consensus 120 ~~a~--~~~~~~l~~--~----------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~ 184 (422)
++++ +.++++++. + ||+|++++|+|.++...++..|.+++.++++.+ ++|++.|++.++ +++
T Consensus 105 ~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~ 181 (427)
T 3ppl_A 105 SLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQV 181 (427)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTSTTE
T ss_pred HHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcCCC
Confidence 9999 588888876 6 899999999999999999999999999998643 489999999884 567
Q ss_pred eEEEEe-CCCCCcccccCHHHHHHHHHHH-HHcCcEEEEcccccccccCCCCCC--Ccccc----CCCCCeEEEecCccc
Q 014603 185 VALVII-NPGNPCGNVYTYQHLQKIAETA-KKLGIMVIADEVYDHLAFGNTPFV--PMGVF----GSIVPVLTLGSISKR 256 (422)
Q Consensus 185 ~~i~i~-~p~nptG~~~~~~~l~~i~~~~-~~~~~~li~D~~~~~~~~~~~~~~--~~~~~----~~~~~~i~i~s~sK~ 256 (422)
++++++ +|+||||.++|.+++++|+++| +++|++||+||+|+.+.|++.... ++..+ +..+++++++||||+
T Consensus 182 ~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 261 (427)
T 3ppl_A 182 KGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI 261 (427)
T ss_dssp EEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT
T ss_pred eEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc
Confidence 777655 6799999999999999999999 999999999999999777654322 23222 244678999999999
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHh
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKT--EEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
+++|+|+||++++ +++++.+..... ...+++.+.|.++..+++.. .+.++.+.++.++++++.+.+.|
T Consensus 262 -~~~G~r~G~~~~~--------~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 332 (427)
T 3ppl_A 262 -TLAGAGVSFFLTS--------AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEIL 332 (427)
T ss_dssp -SCTTSSCEEEECC--------HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCcCccEEEEEcC--------HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999986 568888877654 34577889999999999862 25677888888888888888887
Q ss_pred hc----CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec-CCCCC-----CCCeEEEEecc-ChH
Q 014603 334 KE----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVG-----LKDWLRITFAV-EPS 402 (422)
Q Consensus 334 ~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~~~-----~~~~iRis~~~-~~~ 402 (422)
++ ++++. +..|.+|+|+|+.++.. +..++... +.++||.+.| |..|. ..+++|||++. +++
T Consensus 333 ~~~l~~~~~~~-~~~p~~g~~~~~~~~~~------~~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~ 404 (427)
T 3ppl_A 333 DSRLAEYGVAQ-WTVPAGGYFISLDVVPG------TASRVAEL-AKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVE 404 (427)
T ss_dssp HHHHGGGTCCE-ECCCSBSSCEEEECSTT------CHHHHHHH-HHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHH
T ss_pred HHhcCCCCceE-EeCCCccEEEEEECCcc------hHHHHHHH-HHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHH
Confidence 65 23455 44788899999999753 45566554 5677999999 55553 36899999995 889
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 014603 403 ALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 403 ~l~~~~~~l~~~~~~~~~ 420 (422)
++++++++|.+++++...
T Consensus 405 ~i~~~~~~l~~~l~~~~~ 422 (427)
T 3ppl_A 405 ELEVAMDGVATCVLLAAA 422 (427)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987643
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=334.07 Aligned_cols=370 Identities=19% Similarity=0.201 Sum_probs=272.7
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
++...+++.++.+...+... .++++|||+.|.+.. ....++++.+.+++.+++.......|.+..+.+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la 79 (396)
T 2q7w_A 4 NITAAPADPILGLADLFRAD----ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQ 79 (396)
T ss_dssp TCCCCCC---------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHhcc----CCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHH
Confidence 45566777777777655433 356799999998421 1223667999999998876544557988889999999999
Q ss_pred HHHhhcCCCCCCCCCEEE--ecCHHHHHHHHHHHh--cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 98 DYLNRDLPYKLSPDDVYL--TLGCTQAIEVILTVL--ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++....+..+++++|++ |+|+++|++.+++.+ ..+||+|+++.|+|+++...++..|.+++.++..+++++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 159 (396)
T 2q7w_A 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF 159 (396)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCH
Confidence 999653322245789998 999999999998776 3699999999999999999999999999999886445678999
Q ss_pred HHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCCCccccCC-CCCeE
Q 014603 174 DAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGN-TPFVPMGVFGS-IVPVL 248 (422)
Q Consensus 174 ~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~-~~~~i 248 (422)
+.+++.+++ +++++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.+++ ....++..+.. .++++
T Consensus 160 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (396)
T 2q7w_A 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence 999998864 36778889999999999999999999999999999999999999887653 11122332321 24689
Q ss_pred EEecCccccCCCCceeEEEEe--eCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-----HHHHHHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVT--SDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKITD 320 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~ 320 (422)
+++|+||.|+++|+|+||+++ +++. .. +++++.+.... ..+.+++.+.+.++.++|+... +.++++.++
T Consensus 240 ~~~s~sK~~~~~G~riG~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~ 316 (396)
T 2q7w_A 240 VASSYSXNFGLYNERVGACTLVAADSE-TV--DRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ 316 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEECSSHH-HH--HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-C
T ss_pred EEEeccccccccccccceEEEEcCCHH-HH--HHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 999999999889999999986 2210 00 13455554433 2334568889999999887631 357788888
Q ss_pred HHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe
Q 014603 321 ILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF 397 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 397 (422)
+++++++.+.+.|++++ ++. +..|.+|+|+|+.++ . +.+..+++++||.+.|| +||++
T Consensus 317 ~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~---------~-~~~~~~l~~~gv~v~~~--------~Ris~ 377 (396)
T 2q7w_A 317 RIQRMRQLFVNTLQEKGANRDFS-FIIKQNGMFSFSGLT---------K-EQVLRLREEFGVYAVAS--------GRVNV 377 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCT-HHHHCCSSEEECCCC---------H-HHHHHHHHHHCEECCTT--------CEEEG
T ss_pred HHHHHHHHHHHHHHhcCCCCCcc-eecCCCceEEEecCC---------H-HHHHHHHHhcCeeecCC--------ceEEE
Confidence 99999999999999874 366 336788889887663 2 34556667789999885 59999
Q ss_pred c-cChHHHHHHHHHHHHH
Q 014603 398 A-VEPSALEDGLGRMKAF 414 (422)
Q Consensus 398 ~-~~~~~l~~~~~~l~~~ 414 (422)
+ .+++++++++++|+++
T Consensus 378 ~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 378 AGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp GGCCTTTHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHHHhc
Confidence 8 4899999999999875
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=339.29 Aligned_cols=357 Identities=20% Similarity=0.277 Sum_probs=280.3
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC-CCCCCHHHHHHHHHHHhhc-CC-CCCC-CCCEEEecCHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS-STVGILPARRAIADYLNRD-LP-YKLS-PDDVYLTLGCTQ 121 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~-~~-~~~~-~~~i~~~~g~~~ 121 (422)
++|+|+.|.+. ++ ++.+.+++.+.+.. ..|+ +..|.+++|+.+++++.+. .+ ..+. +++|++|+|+++
T Consensus 104 ~~i~l~~g~~~----~~-~~~~v~a~~~~~~~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~ 175 (533)
T 3f6t_A 104 DAVNYCHTELG----LN-RDKVVAEWVNGAVA---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHHHTTC----CC-HHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred hheeccCCCCC----cC-CcHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence 47899999866 33 56777777777654 2454 7789999999999999665 33 3444 469999999999
Q ss_pred HHHHHHHH-----hcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC--CCCcccCHHHHHHhhcCCceEEEEeCCCC
Q 014603 122 AIEVILTV-----LARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP--AKGWEVDLDAVEALADENTVALVIINPGN 194 (422)
Q Consensus 122 a~~~~~~~-----l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~~~~~~~~i~i~~p~n 194 (422)
++..++.+ ++++||+|+++.|+|.++...+...|.+++.++++. .+++.+|++.|++.++++++++++++|+|
T Consensus 176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~N 255 (533)
T 3f6t_A 176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTN 255 (533)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCT
T ss_pred HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCC
Confidence 99999998 789999999999999999998898999999998865 56688999999999988999999999999
Q ss_pred CcccccCHHHHHHHHHHHH-HcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 195 PCGNVYTYQHLQKIAETAK-KLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 195 ptG~~~~~~~l~~i~~~~~-~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
|||.+++.+++++|+++|+ ++|+++|+||+|+.+.++. .++.... .++++++.||||.|+++|+|+||+++++..
T Consensus 256 PtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~---~~~~~~~-~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~ 331 (533)
T 3f6t_A 256 PTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF---KSIYSVV-PYNTMLVYSYSKLFGCTGWRLGVIALNEKN 331 (533)
T ss_dssp TTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC---CCHHHHS-GGGEEEEEESHHHHTCGGGCEEEEEEESSC
T ss_pred CCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc---cCHhhcC-CCCEEEEecCcccCCCcccceEEEEECcHH
Confidence 9999999999999999999 6899999999999877642 2333332 257899999999999999999999997531
Q ss_pred CcccchhHHHHH--------------------------------Hhhh-hhccCcchHHHHH----HHHHHh-----hch
Q 014603 274 GILQDSGIVDSI--------------------------------KSFL-NISSDPATFIQGA----VPQILE-----KTE 311 (422)
Q Consensus 274 ~~~~~~~~~~~~--------------------------------~~~~-~~~~~~~~~~~~a----~~~~l~-----~~~ 311 (422)
. . ..+++.+ .... ..+.+++.+.|.+ +..+|. ...
T Consensus 332 ~-~--~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~ 408 (533)
T 3f6t_A 332 V-F--DDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSD 408 (533)
T ss_dssp H-H--HHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTB
T ss_pred H-H--HHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccch
Confidence 0 0 0122211 1122 2344667777777 445564 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc--cC---------CCCHHHHHHHHHHhcCeE
Q 014603 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL--EG---------INSDMEFALKLAKEESVI 380 (422)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~---------~~~~~~~~~~l~~~~gi~ 380 (422)
+.++++.++.++++++.+.+.|. + ++. ...|.+++|+|+.++.... .+ ..++.+++..+++++||.
T Consensus 409 ~~~~~~~~~~~~~r~~~l~~~L~-~-~~~-~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~ 485 (533)
T 3f6t_A 409 DPYIDIARKLVSERYDQLHDAMQ-A-PKD-ETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVV 485 (533)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-C-CCC-CSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-C-Ccc-ccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEE
Confidence 57888999999999999999997 6 566 4478889999998863100 00 014567778888889999
Q ss_pred EecCCCCCC-CCeEEEEec-cChHHHHHHHHHHHHHHHHhcc
Q 014603 381 VLPGITVGL-KDWLRITFA-VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 381 v~~g~~~~~-~~~iRis~~-~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+.||..|+. .+++|+|++ .+++++++++++|.++++++.+
T Consensus 486 v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 486 LVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp SCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 999998877 689999999 6899999999999999988753
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=356.54 Aligned_cols=351 Identities=17% Similarity=0.268 Sum_probs=290.2
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
++|+|+.|++. +++++.+.+++.+++... ...|++. ..++|+++++++.+.+|..+++++|++|+|+++++..
T Consensus 32 ~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~ 104 (392)
T 3b1d_A 32 QLLPAWIADMD----FEVMPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISI 104 (392)
Confidence 89999999964 678899999999988653 3467764 7899999999998877777888999999999999999
Q ss_pred HHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC-CcccCHHHHHHhhc-CCceEEEEeCCCCCcccccCHH
Q 014603 126 ILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK-GWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 126 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~~~ 203 (422)
++++++++||+|+++.|+|+++...++..|.+++.++.++.+ +|.+|++.+++.++ .+++++++++|+||||.+++.+
T Consensus 105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 184 (392)
T 3b1d_A 105 AIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWERE 184 (392)
Confidence 999999999999999999999999888889998888875332 46689999999886 5788888999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
++++|+++|+++|+++|+||+|..+.+++....++..+.. .++++++.|+||.|+++|+|+||+++++ +++
T Consensus 185 ~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-------~~~ 257 (392)
T 3b1d_A 185 VLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIEN-------PTL 257 (392)
Confidence 9999999999999999999999998887655445555543 4678999999999988999999999864 236
Q ss_pred HHHHHhhhhhc--cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCcc
Q 014603 282 VDSIKSFLNIS--SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYS 358 (422)
Q Consensus 282 ~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~ 358 (422)
++.+....... ++++++.+.++.++|+.. +.++++.+++++++++.+.+.|++ +|++. +..|.+++++|+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~i~~~~~ 335 (392)
T 3b1d_A 258 CAQFKHQQLVNNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEAPRLK-VMKPQGTYLIWLDFSDY 335 (392)
Confidence 66666654332 356788899888888742 567888899999999999999988 78887 44778888888888641
Q ss_pred cccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 359 LLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
. .+..++...+++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 336 ~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 336 G----LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 1 13456666665577999999988863 578999999888999999999998875
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=332.52 Aligned_cols=350 Identities=18% Similarity=0.247 Sum_probs=276.9
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHH--HHhhCC-CCCCC-CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIV--HSVRSA-RFNCY-SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~--~~~~~~-~~~~y-~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
....|||+.|.|.. ..++.++.+.+++. +.+... ....| ++..|.+++|+++++++ ++++++|++|+|+
T Consensus 24 ~~~~i~l~~g~p~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~------~~~~~~i~~t~G~ 96 (423)
T 3ez1_A 24 RGLNLNMQRGQPAD-ADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL------DVKAENVLVWNNS 96 (423)
T ss_dssp HTCCEESCCCCCCH-HHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT------TSCGGGEEECSSC
T ss_pred CCceEecCCCCCCh-HhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh------CCChhhEEEeCCc
Confidence 45689999999662 11466778888875 444422 24689 78889999999999999 5688999999999
Q ss_pred HHHHH--HHHHHhcC--C---------CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh--cCCc
Q 014603 120 TQAIE--VILTVLAR--P---------GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA--DENT 184 (422)
Q Consensus 120 ~~a~~--~~~~~l~~--~---------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~ 184 (422)
+++++ .++++++. + ||+|+++.|+|+++...++..|.+++.++.+.+ ++|++.|++.+ .+++
T Consensus 97 ~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~ 173 (423)
T 3ez1_A 97 SLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGTDPSV 173 (423)
T ss_dssp HHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHSCTTE
T ss_pred HHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhhCCCc
Confidence 99998 88888877 7 599999999999999999999999999998643 48999999998 4678
Q ss_pred eEEEEe-CCCCCcccccCHHHHHHHHHHH-HHcCcEEEEcccccccccCC-C--CCCCcccc----CCCCCeEEEecCcc
Q 014603 185 VALVII-NPGNPCGNVYTYQHLQKIAETA-KKLGIMVIADEVYDHLAFGN-T--PFVPMGVF----GSIVPVLTLGSISK 255 (422)
Q Consensus 185 ~~i~i~-~p~nptG~~~~~~~l~~i~~~~-~~~~~~li~D~~~~~~~~~~-~--~~~~~~~~----~~~~~~i~i~s~sK 255 (422)
+++++. +|+||||.+++.+++++|+++| +++|+++|+||+|..+.+.+ . ...++..+ +..++++++.|+||
T Consensus 174 ~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 253 (423)
T 3ez1_A 174 KGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK 253 (423)
T ss_dssp EEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTT
T ss_pred eEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchh
Confidence 888654 7899999999999999999999 99999999999999655544 2 22233222 34467899999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhh--ch-HHHHHHHHHHHHHHHHHHHH
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEK--TE-EEFFSKITDILRETADICCD 331 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~--~~-~~~~~~~~~~~~~~~~~l~~ 331 (422)
+ +++|+|+||++++ +++++.+..... ...+++.+.|.++..+++. .. ..++++.++.++++++.+.+
T Consensus 254 ~-~~~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (423)
T 3ez1_A 254 I-TFAGAGLGFVASS--------EDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDE 324 (423)
T ss_dssp T-SCSSSSCEEEEEC--------HHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-ccCCcceEEEEeC--------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7899999999986 468888877664 3457788999999998886 22 46777777888888877777
Q ss_pred Hhhc----CC-CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec-CCCCC-----CCCeEEEEec-c
Q 014603 332 RLKE----IP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVG-----LKDWLRITFA-V 399 (422)
Q Consensus 332 ~L~~----~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~~~-----~~~~iRis~~-~ 399 (422)
.|.+ ++ ++. +..|.+|+|+|+.++.. +..++. .+++++||.+.| |..|+ .++++||+++ .
T Consensus 325 ~l~~~l~~~~~~~~-~~~p~~g~~~~~~~~~~------~~~~~~-~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~ 396 (423)
T 3ez1_A 325 VLRAELGEGGEYAT-WTLPKGGYFISLDTAEP------VADRVV-KLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP 396 (423)
T ss_dssp HHHHHHTTTTSSEE-ECCCSBSSCEEEEESSS------CHHHHH-HHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS
T ss_pred HHHHhcCcCCCceE-EeCCCccEEEEEECCCC------cHHHHH-HHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC
Confidence 7654 43 245 44788899999999752 344444 455778999999 66664 2589999998 4
Q ss_pred ChHHHHHHHHHHHHHHHHhcc
Q 014603 400 EPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 400 ~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+++++++++++|.+++++...
T Consensus 397 ~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 397 PVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987643
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=326.02 Aligned_cols=363 Identities=17% Similarity=0.177 Sum_probs=282.7
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
++...+++.++.+...+... .++++|||+.|.+.. ....++++.+.+++.+++.......|++..+.+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la 79 (394)
T 2ay1_A 4 NLKPQAPDKILALMGEFRAD----PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMG 79 (394)
T ss_dssp GCCCCCCCSHHHHHHHHHHC----CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHH
T ss_pred cCccCCCccHHHHHHHHHhC----CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHH
Confidence 56778888899888766554 467899999998632 1224667999999998876444557988889999999999
Q ss_pred HHHhhcCCCCCCCCCEEE--ecCHHHHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 98 DYLNRDLPYKLSPDDVYL--TLGCTQAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++... ++++++|++ |+|+++|++.+++++.. +||+|+++.|+|+++...++..|.+++.++..+.+++.+|+
T Consensus 80 ~~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 156 (394)
T 2ay1_A 80 ELILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF 156 (394)
T ss_dssp HHHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred HHHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCH
Confidence 998431 236789999 99999999999988754 89999999999999999999999999999886545678999
Q ss_pred HHHHHhhcCC---ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCccccC-CCCCeE
Q 014603 174 DAVEALADEN---TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVFG-SIVPVL 248 (422)
Q Consensus 174 ~~l~~~~~~~---~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~-~~~~~i 248 (422)
+.+++.++++ +.++++++|+||||.++|.+++++|+++|+++|+++|+||+|+.+.+++. ...++..+. ..++++
T Consensus 157 ~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 236 (394)
T 2ay1_A 157 EGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEE
Confidence 9999988643 56677799999999999999999999999999999999999998776431 111222221 124689
Q ss_pred EEecCccccCCCCceeEEEEe--eCCCCcccchhHH----HHHHhhh-hhccCcchHHHHHHHHHHhhch-----HHHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVT--SDPNGILQDSGIV----DSIKSFL-NISSDPATFIQGAVPQILEKTE-----EEFFS 316 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~--~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~~ 316 (422)
+++|+||.++++|+|+||+++ ++ ++++ ..+.... ..+.+++++.+.++.++|+... +.+++
T Consensus 237 ~~~s~sK~~~~~G~riG~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 309 (394)
T 2ay1_A 237 IAASCSKNFGIYRERTGCLLALCAD-------AATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELE 309 (394)
T ss_dssp EEEECTTTTTCGGGCEEEEEEECSS-------HHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEeccCCCcCcCCccceEEEEeCC-------HHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999889999999997 32 3333 3333222 2334568899999999887531 35788
Q ss_pred HHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeE
Q 014603 317 KITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL 393 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 393 (422)
+.+++++++++.+.+.|++++ ++. +..|.+|+|+|+.++ .. .+..+++++||.+.|| +
T Consensus 310 ~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~g~~~~~~~~---------~~-~~~~~l~~~gi~v~~~--------~ 370 (394)
T 2ay1_A 310 AVRSGMLRLREQLAGELRDLSGSDRFG-FVAEHRGMFSRLGAT---------PE-QVKRIKEEFGIYMVGD--------S 370 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTTT-HHHHCCSSEEECCCC---------HH-HHHHHHHHHCEECCTT--------C
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCee-EEcCCceEEEeeCCC---------HH-HHHHHHHhCCEEecCC--------C
Confidence 888999999999999998863 365 335677899997663 23 3456667789999885 5
Q ss_pred EEEec-cChHHHHHHHHHHHHH
Q 014603 394 RITFA-VEPSALEDGLGRMKAF 414 (422)
Q Consensus 394 Ris~~-~~~~~l~~~~~~l~~~ 414 (422)
|++++ ++++++++++++|+++
T Consensus 371 Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 371 RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHH
T ss_pred eEEeecCCHhhHHHHHHHHHHc
Confidence 99998 5899999999999875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=331.51 Aligned_cols=350 Identities=17% Similarity=0.244 Sum_probs=268.0
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHH-hhcCCCCC---CCCCEEEecCHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL-NRDLPYKL---SPDDVYLTLGCTQA 122 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l-~~~~~~~~---~~~~i~~~~g~~~a 122 (422)
+|+|+.|.+. + +++.+.+++.+.+.. ..|+++.|.+++|+.+++.+ .+.++.++ ++++|++|+|++++
T Consensus 106 ~i~l~~g~~~----~-~~~~~~~al~~~~~~---~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~ea 177 (546)
T 2zy4_A 106 SLSYVRDQLG----L-DPAAFLHEMVDGILG---CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAA 177 (546)
T ss_dssp HHHHHHHTSC----C-CHHHHHHHHHHHHHT---CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHH
T ss_pred hhecccCCCC----C-CChHHHHHHHHhhhc---CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHH
Confidence 7899999865 3 456777788777642 57999888999999877655 44443322 46899999999999
Q ss_pred HHHHHHH-----hcCCCCEEEecCCCccchHHHHhhC--CCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCC
Q 014603 123 IEVILTV-----LARPGANILLPRPGFPYYEARATHS--HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNP 195 (422)
Q Consensus 123 ~~~~~~~-----l~~~gd~Vl~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~np 195 (422)
+..++++ ++++||+|++++|+|+++...+... |.+++.++.+++++|.+|++.|++.++++++++++++|+||
T Consensus 178 l~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NP 257 (546)
T 2zy4_A 178 MAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNP 257 (546)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSS
T ss_pred HHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCC
Confidence 9999987 5789999999999999998876544 57788888876667889999999888778999999999999
Q ss_pred cccccCHHHHHHHHHHH--HHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 196 CGNVYTYQHLQKIAETA--KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 196 tG~~~~~~~l~~i~~~~--~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
||.+++.+++++|+++| +++|++||+||+|+.+.++ ..++.... .++++++.||||.++++|+|+||+++++.
T Consensus 258 tG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~-~~~~i~~~S~SK~~g~~GlRiG~~~~~~~- 332 (546)
T 2zy4_A 258 PSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAIC-PENTLLVYSFSKYFGATGWRLGVVAAHQQ- 332 (546)
T ss_dssp SCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHC-GGGEEEEEESTTTTTCGGGCEEEEEEESS-
T ss_pred CCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhC-CCCEEEEEeCccccCCCCcceEEEEECCH-
Confidence 99999999999999999 7899999999999987653 22333332 25789999999999999999999999742
Q ss_pred CcccchhHHHHHHhh-------------h------------------------hhccCcchHHHHHH-----HHHHhhch
Q 014603 274 GILQDSGIVDSIKSF-------------L------------------------NISSDPATFIQGAV-----PQILEKTE 311 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~-------------~------------------------~~~~~~~~~~~~a~-----~~~l~~~~ 311 (422)
++++++... . ..+.+.+.+.|.++ .++++. .
T Consensus 333 ------~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~-~ 405 (546)
T 2zy4_A 333 ------NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDE-A 405 (546)
T ss_dssp ------CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCT-T
T ss_pred ------HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhc-c
Confidence 244444210 0 11235566777664 234443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc----c-------cCCCCHHHHHHHHHHhcCeE
Q 014603 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL----L-------EGINSDMEFALKLAKEESVI 380 (422)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~----~-------~~~~~~~~~~~~l~~~~gi~ 380 (422)
+.+.++.++.++++++.+.+.|. + ++. ...+.+++|+|++++... . +...++.+++.++++++||.
T Consensus 406 ~~~~~~~r~~~~~r~~~l~~~L~-~-~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~ 482 (546)
T 2zy4_A 406 DEYKHTLKQLIRRRETTLYRELG-M-PPL-RDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIV 482 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGT-S-SCC-CCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-C-Ccc-cCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEE
Confidence 57788888999999999998886 4 344 336788899999885210 0 00013445566777888999
Q ss_pred EecCCCCCC-CCeEEEEecc-ChHHHHHHHHHHHHHHHHhc
Q 014603 381 VLPGITVGL-KDWLRITFAV-EPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 381 v~~g~~~~~-~~~iRis~~~-~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.||..|+. ++++||+++. +++++++++++|+++++++.
T Consensus 483 v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 483 LLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp CEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999976 5689999995 88999999999999988764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=317.55 Aligned_cols=379 Identities=14% Similarity=0.089 Sum_probs=273.7
Q ss_pred ccccHHHhh---ccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCC-CCCCCcHHHHHHHHHHhhCCCCCCCCCCCCC
Q 014603 14 FKANEELKT---ASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAF-PSFRTASVAVDAIVHSVRSARFNCYSSTVGI 89 (422)
Q Consensus 14 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~ 89 (422)
+..++|.+. .+++.|.++.+.+++. ..+.|||++|...+. ...+..|.|++|....++......|.|..|+
T Consensus 15 m~~~~~~~~v~~~p~d~i~~l~~~~~~d-----~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~ 89 (420)
T 4h51_A 15 MTTAERWQKIQAQAPDVIFDLAKRAAAA-----KGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGY 89 (420)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHC-----CSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCC
T ss_pred hhhhHHHhCCCCCCCChHHHHHHHHhcC-----CCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCCh
Confidence 334445444 4567788887766553 445899999954321 2345578999998887766555579999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCE--EEecCHHHHHHHHHHHh----cCCCCEEEecCCCccchHHHHhhCCCe-EEEee
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDV--YLTLGCTQAIEVILTVL----ARPGANILLPRPGFPYYEARATHSHLE-VRHFD 162 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~~~~~~~~g~~-~~~~~ 162 (422)
+++|+++++++... ....+.+ +-|.|+|.|+..++..+ ..|||+|++++|+|.+|...++..|.+ +..++
T Consensus 90 p~lr~aia~~~~g~---~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~ 166 (420)
T 4h51_A 90 QPFIDEAVKIIYGN---TVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYA 166 (420)
T ss_dssp HHHHHHHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHhcCC---CccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeec
Confidence 99999999998532 2233333 45888998887766554 469999999999999999999999987 44555
Q ss_pred ccCCCCcccCHHHHHHhh---cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC--
Q 014603 163 LLPAKGWEVDLDAVEALA---DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP-- 237 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~---~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~-- 237 (422)
....+.+.+|.+.+.+.+ .++++++++++||||||.+++.++|++|+++|+++++++|+|++|.++.+++.....
T Consensus 167 ~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~ 246 (420)
T 4h51_A 167 YYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYA 246 (420)
T ss_dssp CEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred cccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHH
Confidence 544556678888877655 456778888899999999999999999999999999999999999998876532111
Q ss_pred cc-ccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch----
Q 014603 238 MG-VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE---- 311 (422)
Q Consensus 238 ~~-~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~---- 311 (422)
+. ..+..++++++.||||.|+++|+|+||++++.+.... ...+..++.... ...++++...|.++..++.+..
T Consensus 247 ~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~-~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~ 325 (420)
T 4h51_A 247 ARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTK-RADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKE 325 (420)
T ss_dssp HHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHH-HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHH
T ss_pred HHhHHhhCceEEEEeccccccccccCceEEEEecccCHHH-HHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHH
Confidence 11 1123356899999999999999999999887432100 011222222222 2345778888888888887632
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcCC--C-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC
Q 014603 312 -EEFFSKITDILRETADICCDRLKEIP--C-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 312 -~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
+..++..+++++++|+.+.+.|+++. + |. ...+..|+|.|+.++ . ++++ +++++||.+.|+.
T Consensus 326 ~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~-~i~~q~GmF~~~gls---------~-e~v~-~L~e~~Vy~~~~g-- 391 (420)
T 4h51_A 326 WEAELSAMAERIRTMRRTVYDELLRLQTPGSWE-HVINQIGMFSFLGLS---------K-AQCE-YCQNHNIFITVSG-- 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCT-HHHHCCSSEEECCCC---------H-HHHH-HHHHTTEECCTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-eecCCCceEEecCcC---------H-HHHH-HHHhCCEEEcCCC--
Confidence 34567778899999999999999862 1 33 235677999987663 3 3344 4578899998864
Q ss_pred CCCCeEEEEec-cChHHHHHHHHHHHHHHHHhccc
Q 014603 388 GLKDWLRITFA-VEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 388 ~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
|||++ .++++|++++++|.+++++..++
T Consensus 392 ------Ris~Agl~~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 392 ------RANMAGLTHETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp ------EEEGGGCCHHHHHHHHHHHHHHHC-----
T ss_pred ------EEEeccCCHHHHHHHHHHHHHHHHHhhcC
Confidence 99998 69999999999999999887654
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=311.83 Aligned_cols=327 Identities=16% Similarity=0.215 Sum_probs=261.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++.++|||+.|.+. +++++.+.+++.+.+.. ...|++..+ +++|+++++++ ++++++|++|+|++++
T Consensus 13 ~g~~~id~~~~~~~----~~~~~~v~~a~~~~~~~--~~~y~~~~~-~~lr~~la~~~------~~~~~~i~~t~g~~~a 79 (350)
T 3fkd_A 13 LSSEIVNFSTTVWT----DGDKDHLEKHLVENLNC--IRHYPEPDA-GTLRQMLAKRN------SVDNNAILVTNGPTAA 79 (350)
T ss_dssp ---CCEECSCCSCC----CSCCHHHHHHHHHTGGG--GGSCCCTTC-HHHHHHHHHHT------TCCGGGEEEESHHHHH
T ss_pred ccccEEEccCCCCC----CCCCHHHHHHHHHhHhH--HhcCCCCcH-HHHHHHHHHHh------CcCHHHEEEcCCHHHH
Confidence 46889999999855 57889999999988732 457877665 89999999998 5678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeec-cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccC
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL-LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~ 201 (422)
++.+++++. ||+|+++.|+|.++...++..|.+++.++. ++.++ +++ ++++++++++|+||||.+++
T Consensus 80 l~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~ 147 (350)
T 3fkd_A 80 FYQIAQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQ 147 (350)
T ss_dssp HHHHHHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCC
Confidence 999999988 999999999999999999999999999987 43222 333 47889999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.+++.+|+++|+++ ++|+||+|+.+.+++... ...++..+++++++|+||.++++|+|+||++++ +++
T Consensus 148 ~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~--~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~--------~~~ 215 (350)
T 3fkd_A 148 RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR--PADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN--------KDF 215 (350)
T ss_dssp HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC--GGGGTTCSSEEEEEESHHHHSCGGGCCEEEECC--------HHH
T ss_pred HHHHHHHHHhCCCC--EEEEECchhhhccCcchh--hHHhhcCCCEEEEecCchhccCcchheEeEEeC--------HHH
Confidence 99999999988765 999999999887665432 234445567899999999998899999999985 578
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
.+++...... .+++.+.+.++..+|+... .+.++..+.. ++++.+.+.|+++|++. + .|..+.|+|+.++..
T Consensus 216 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~-~-~~~~~~~~~~~~~~~--- 287 (350)
T 3fkd_A 216 MKRVAAFSTP-WAVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVE-V-HPSGTTFFLLRLKKG--- 287 (350)
T ss_dssp HHHHHTTCCT-TCSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEE-E-CCCSSSEEEEEESSS---
T ss_pred HHHHHHhCCC-CCCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcE-E-CCCCCcEEEEECCCC---
Confidence 8888776543 4778899999999987532 2334444444 88889999999888887 4 455677888888742
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
+..++...+.+++||.+.||..|+. .+++||+++ ++++++++++.|+++.+++
T Consensus 288 ---~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 288 ---TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp ---CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC-
T ss_pred ---CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHHh
Confidence 4677777776658999999998865 689999998 5577888888888777654
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=307.68 Aligned_cols=331 Identities=18% Similarity=0.251 Sum_probs=269.4
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
.|||+.|.+. +++++.+.+++.+++... ....|++..+ .++|+++++++.+.+|.++++++|++|+|++++++
T Consensus 32 ~idl~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 32 DIRLNTNENP----YPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ 106 (369)
T ss_dssp SEECSSCCCC----SCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred ceeccCCCCC----CCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence 4999999854 578899999999888642 2457876555 89999999999887777788899999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~ 203 (422)
.++++++++||+|+++.|+|+++...++..|.+++.++.+ +++.+|++.+++.+++ +++++++++|+||||.+++.+
T Consensus 107 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~ 184 (369)
T 3cq5_A 107 QLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLD 184 (369)
T ss_dssp HHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999988864 4467899999998876 788999999999999999877
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC-CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV-PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
++.+|++ .+++++|+||+|+.+.++ . ..+...+..+ +++++.|+||.++++|+|+||++++ ++++
T Consensus 185 ~l~~l~~---~~~~~li~De~~~~~~~~-~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~--------~~~~ 250 (369)
T 3cq5_A 185 DVERIIN---VAPGIVIVDEAYAEFSPS-P--SATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN--------PAFI 250 (369)
T ss_dssp HHHHHHH---HCSSEEEEECTTGGGCCS-C--CGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC--------THHH
T ss_pred HHHHHHH---hCCCEEEEECCchhhcCC-c--chHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC--------HHHH
Confidence 7776666 556999999999987643 1 1122223334 6899999999998899999999986 3677
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+...... .+++.+.+.++.++|+. ..++++.+++++++++.+.+.|++. ++. + .+..+.|+|+.++.
T Consensus 251 ~~l~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~~~~~~~~~~----- 319 (369)
T 3cq5_A 251 DAVMLVRLP-YHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEEL-GYA-V-VPSESNFVFFGDFS----- 319 (369)
T ss_dssp HHHHTTSCT-TCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHH-TCE-E-ECCSSSEEEEECCS-----
T ss_pred HHHHHcCCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhC-CCE-E-CCCCCeEEEEECCC-----
Confidence 777665543 36788999999999986 4578888899999999999999885 676 3 25567788888762
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
+..++...+ .++||.+.|| +.++++||+++ +++++++++++|+++++
T Consensus 320 --~~~~l~~~l-~~~gi~v~~~---~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 320 --DQHAAWQAF-LDRGVLIRDV---GIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp --SHHHHHHHH-HHTTEECBCC---SCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHH-HHCCEEEEEC---CCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 466676666 5679999998 23689999998 67899999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=300.38 Aligned_cols=321 Identities=18% Similarity=0.220 Sum_probs=256.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
..+.+|+|+.+... ++++|.+.+++.+.... ...|+ ..+.+++|+++++++ ++++++|++|+|++++
T Consensus 14 ~~~~~i~l~~n~~~----~~~~~~v~~a~~~~~~~--~~~y~-~~~~~~lr~~la~~~------~~~~~~i~~t~G~~~~ 80 (337)
T 3p1t_A 14 AAAQAVCLAFNENP----EAVEPRVQAAIAAAAAR--INRYP-FDAEPRVMRKLAEHF------SCPEDNLMLVRGIDEC 80 (337)
T ss_dssp CCCCCEECSSCCCC----SCCCHHHHHHHHHHGGG--TTSCC-TTHHHHHHHHHHHHH------TSCGGGEEEESHHHHH
T ss_pred CCCCceEeeCCCCC----CCCCHHHHHHHHHhhhh--hccCC-CCchHHHHHHHHHHh------CcCHHHEEEeCCHHHH
Confidence 46779999999743 67889999999998765 45785 468899999999999 5678899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
++.++.++ +||+|+++.|+|.++...++..|.+++.++.++ ++.+|++.+++. .+++++++++|+||||.++|.
T Consensus 81 l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~ 154 (337)
T 3p1t_A 81 FDRISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSA 154 (337)
T ss_dssp HHHHHHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCH
T ss_pred HHHHHHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCH
Confidence 99999988 899999999999999999999999999888753 467999999876 467899999999999999987
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++.+| |+++++ +|+||+|..+.+.+.. . ....+++++++|+||.|+++|+|+||++++ ++++
T Consensus 155 ~~l~~l---~~~~~~-~ivDea~~~~~~~~~~--~---~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~--------~~~~ 217 (337)
T 3p1t_A 155 GELDQL---RQRAGK-LLIDETYVDYSSFRAR--G---LAYGENELVFRSFSKSYGLAGLRLGALFGP--------SELI 217 (337)
T ss_dssp HHHHHH---HHHCSE-EEEECTTGGGSSCSSS--C---CCCBTTEEEEEESSSTTCCTTTCCEEEECC--------HHHH
T ss_pred HHHHHH---HHhCCc-EEEECCChhhcccccc--c---cccCCCEEEEeeCchhccCcchheEEEEeC--------HHHH
Confidence 776665 457776 5669999976543321 1 223356799999999998899999999986 5677
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC
Q 014603 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG 362 (422)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (422)
+.+..... ..+++.+.+.++.++|+. ..++.+..+++.++++.+.+.|+++ ++. +..+. +.|+|+..+.
T Consensus 218 ~~l~~~~~-~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-~~~~~~~~~~----- 286 (337)
T 3p1t_A 218 AAMKRKQW-FCNVGTLDLHALEAALDN--DRAREAHIAKTLAQRRRVADALRGL-GYR-VASSE-ANFVLVENAA----- 286 (337)
T ss_dssp HHHHTTSC-TTCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCC-BCCCS-SSEEEEECTT-----
T ss_pred HHHHhhcC-CCCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-cCE-ECCCC-CeEEEEEcCC-----
Confidence 77766543 346788899998888875 3446667777888889999999988 776 43444 5577776642
Q ss_pred CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 363 INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 363 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
..++.. +++++||.+.||..|+.++++|||++ ++++++++++.|+++.
T Consensus 287 ---~~~~~~-~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 287 ---GERTLR-FLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYS 334 (337)
T ss_dssp ---THHHHH-HHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred ---HHHHHH-HHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHh
Confidence 334444 45677999999999988899999998 5788999888887764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=303.35 Aligned_cols=329 Identities=17% Similarity=0.286 Sum_probs=264.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+++.+|+|+.|.+. +++++.+.+++.+.+... ....|+.. +..++|+++++++ ++++++|++|+|++
T Consensus 24 ~~~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~------g~~~~~i~~t~g~~ 92 (360)
T 3hdo_A 24 DIASWIKLNTNENP----YPPSPEVVKAILEELGPDGAALRIYPSA-SSQKLREVAGELY------GFDPSWIIMANGSD 92 (360)
T ss_dssp CCTTSEECSSCCCS----SCCCHHHHHHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHH------TCCGGGEEEESSHH
T ss_pred cccceeeccCCCCC----CCCCHHHHHHHHHHHhcccchhhcCCCC-chHHHHHHHHHHh------CcCcceEEEcCCHH
Confidence 46789999999965 688999999999998763 13467653 5799999999999 46788999999999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCccccc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~ 200 (422)
++++.++.+++++||+|+++.|+|+++...++..|.+++.++.+. ++.+ +.+++.+ +++++++++|+||||.++
T Consensus 93 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~ 166 (360)
T 3hdo_A 93 EVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY--EGKVFFLTTPNAPLGPSF 166 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB--CSSEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCc
Confidence 999999999999999999999999999999999999999998753 3333 4444333 356889999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchh
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+.+++ .++|+++|+++|+||+|+.+. +..... ..+..++++++.|+||.|+++|+|+||++++ ++
T Consensus 167 ~~~~l---~~l~~~~~~~li~De~~~~~~--~~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~ 231 (360)
T 3hdo_A 167 PLEYI---DELARRCAGMLVLDETYAEFA--ESNALE--LVRRHENVVVTRTLSKSYSLAGMRIGLAIAR--------PE 231 (360)
T ss_dssp CHHHH---HHHHHHBSSEEEEECTTGGGS--SCCCTH--HHHHCSSEEEEEESTTTTSCTTSCCEEEECC--------HH
T ss_pred CHHHH---HHHHHHCCCEEEEECChHhhC--CcchhH--HhccCCCEEEEecchHhhcCCccceeeEeeC--------HH
Confidence 87665 455668999999999999853 332222 2233456899999999999999999999985 57
Q ss_pred HHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc
Q 014603 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 360 (422)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (422)
+.+.+...... .+++++.+.++.++|+. ..++++.+++++++++.+.+.|+++ ++. + .+..+.|+|+.++..
T Consensus 232 ~~~~~~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~-~~~~~~~~~~~~~~~-- 303 (360)
T 3hdo_A 232 VIAALDKIRDH-YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYD-V-IPSQGNYLFATPPDR-- 303 (360)
T ss_dssp HHHHHHHHSCS-CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-CCCSSSEEEEECTTC--
T ss_pred HHHHHHHhCCC-CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCE-E-cCCCccEEEEECCCC--
Confidence 88888766543 47888999999999986 5678899999999999999999998 776 3 355677888877632
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+..++...+ .++||.+.++..++.++++||+++ ++++++++++.|+++.+.
T Consensus 304 ----~~~~l~~~l-~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 304 ----DGKRVYDGL-YARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp ----CHHHHHHHH-HHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHH-HHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhcc
Confidence 566676665 567999999877656789999998 678999999998877544
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=317.49 Aligned_cols=330 Identities=17% Similarity=0.199 Sum_probs=254.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhh-C--CCCCCCCCCCCC-----HHHHHHHHHHHhhcCCCCCCC-CCE
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVR-S--ARFNCYSSTVGI-----LPARRAIADYLNRDLPYKLSP-DDV 113 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~-~--~~~~~y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~-~~i 113 (422)
++.++|+|+.|.|+ ++.++.+.+++.+... . .....|++..|. +++|++++++++ ..|+.+.+ ++|
T Consensus 20 ~~~~~i~l~~g~p~----~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i 94 (391)
T 3bwn_A 20 MSDFVVNLDHGDPT----AYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYI 94 (391)
T ss_dssp TTTSCEECSSCCCG----GGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEE
T ss_pred CCCCeeEcCCCCCC----CCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeE
Confidence 57789999999966 4555666666533321 1 134579988898 999999999998 45666666 599
Q ss_pred EEecCHHHHHHHHHHHhcCCCC----EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEE
Q 014603 114 YLTLGCTQAIEVILTVLARPGA----NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVI 189 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l~~~gd----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i 189 (422)
++|+|+++++..++++++++|| +|++++|+|..+...++..|.+++.++++.+ + +. .++++++++
T Consensus 95 ~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~--l~--------~~~~k~v~l 163 (391)
T 3bwn_A 95 VVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW-G--FD--------KKGPYIELV 163 (391)
T ss_dssp EEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST-T--CC--------CCSCEEEEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH-H--cC--------CCCCEEEEE
Confidence 9999999999999999999999 9999999999999999999999888877532 2 22 246889999
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
++|+||||.+++ +|++.++.++++||+||+|.. +. ..++.. ..+++++++||||.|+++|+|+||+++
T Consensus 164 ~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~~-~~~l~~--~~~~~i~~~S~SK~~g~~GlRiG~~~~ 231 (391)
T 3bwn_A 164 TSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----PH-YTPITR--RQDHDIMLFTFSKITGHAGSRIGWALV 231 (391)
T ss_dssp ESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----TT-TSCCCC--CBCCSEEEEEHHHHHSCGGGCEEEEEE
T ss_pred CCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----CC-CCcccc--CCCCeEEEEechhhcCCCccceEEEEe
Confidence 999999999986 344422333499999999973 21 122322 335789999999999999999999997
Q ss_pred eCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 014603 270 SDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE---------EEFFSKITDILRETADICCDRLKEIPCI 339 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 339 (422)
++ +++++++..... ...+++.+.|.++..+|+... +.++++.++.++++++.+.+.|++++++
T Consensus 232 ~~-------~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 304 (391)
T 3bwn_A 232 KD-------KEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAF 304 (391)
T ss_dssp CC-------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred cC-------HHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 32 568888877664 345778899999999998642 3578889999999999999999998766
Q ss_pred CCCCC-------------CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEEeccChHHHH
Q 014603 340 TCPKK-------------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALE 405 (422)
Q Consensus 340 ~~~~~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~l~ 405 (422)
.+. . |.+|+|+|+.++. . +.+..+++++||.+.||..|+. ++++|||++.++++++
T Consensus 305 ~~~-~p~~~~~~f~~~~~~~~g~~~~~~~~~--------~-~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~ 374 (391)
T 3bwn_A 305 TLP-KYPEAFCNYFGKSLESYPAFAWLGTKE--------E-TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFN 374 (391)
T ss_dssp ECC-CCCCEEETTTTEEECCCCSEEEEEESS--------S-CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHH
T ss_pred ccc-cCCccccccccccCCCcceEEEecCCc--------H-HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHH
Confidence 532 3 3445689998863 1 2344556778999999999976 6899999998889999
Q ss_pred HHHHHHHHHHHH
Q 014603 406 DGLGRMKAFYDR 417 (422)
Q Consensus 406 ~~~~~l~~~~~~ 417 (422)
+++++|++++++
T Consensus 375 ~~~~~L~~~~~~ 386 (391)
T 3bwn_A 375 VFLERLANMKLI 386 (391)
T ss_dssp HHHHHHHSCC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=318.80 Aligned_cols=332 Identities=14% Similarity=0.157 Sum_probs=264.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC--CCCCCC-C---CHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN--CYSSTV-G---ILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~-g---~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
.+..+|+|+.|.|. +++++.+.+++.+.+...... .|++.. | .+++|+++++++++..+..+++++|++|
T Consensus 54 ~~~~~i~l~~g~~~----~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t 129 (427)
T 2hox_A 54 IQGCSADVASGDGL----FLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFG 129 (427)
T ss_dssp CTTCCEECCSCCCG----GGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEE
T ss_pred CCCceEEecCcCCC----CCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEe
Confidence 35578999999965 566778888888877322222 488877 8 9999999999998766656788999999
Q ss_pred cCHHHHHHHHHHHh--------cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEE
Q 014603 117 LGCTQAIEVILTVL--------ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV 188 (422)
Q Consensus 117 ~g~~~a~~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~ 188 (422)
+|++++++.++.++ +++||+|+++.|+|..+...++..|.+++. +.+|++.|++.+++++++++
T Consensus 130 ~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~k~v~ 201 (427)
T 2hox_A 130 VGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEM 201 (427)
T ss_dssp SHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEE
T ss_pred CCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee--------ecCCHHHHHHhhcCCceEEE
Confidence 99999999999999 899999999999999999999999987663 34677888888877889999
Q ss_pred EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 189 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
+++|+||||.+++ +.+ + ++..+.|+++.. + ..++..+. .+++++++||||.++++|+|+||++
T Consensus 202 l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~----~--~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~ 264 (427)
T 2hox_A 202 VTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW----P--HYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWAL 264 (427)
T ss_dssp EESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS----T--TTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEE
T ss_pred EcCCCCCcccccH-HHH-------c--CCCEEEeecccC----C--CCCccccC-CCceEEEEeChhcCCCCCceEEEEE
Confidence 9999999999998 422 2 566788877642 1 12333333 4578999999999999999999999
Q ss_pred eeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhch----------HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTE----------EEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
+++ +++++++...... ..+++.+.|.++..+|+... +.++++.+++++++++.+.+.|++++
T Consensus 265 ~~~-------~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (427)
T 2hox_A 265 IKD-------ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSD 337 (427)
T ss_dssp ECC-------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ECC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 853 5688888776643 35778899999888887531 24566788899999999999999886
Q ss_pred CCCC-------------CCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEEeccChHH
Q 014603 338 CITC-------------PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSA 403 (422)
Q Consensus 338 ~~~~-------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~ 403 (422)
++.+ +..|.+|+|+|++++. +..++...+++++||.+.||..|+. ++++|||++.++++
T Consensus 338 g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~ 410 (427)
T 2hox_A 338 RFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDD 410 (427)
T ss_dssp SEECCCCCSCEEETTTTEEECCCCSEEEEEECS-------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHH
T ss_pred CccccccccccccccccccCCCCceEEEEECCC-------cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHH
Confidence 6652 1145668999999864 2345667777778999999998876 78999999998999
Q ss_pred HHHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYDR 417 (422)
Q Consensus 404 l~~~~~~l~~~~~~ 417 (422)
|++++++|.+++++
T Consensus 411 l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 411 FDQLMYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998754
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=295.29 Aligned_cols=316 Identities=20% Similarity=0.270 Sum_probs=253.1
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
.++|+|+.|.+. +++++.+.+++.+.+.......|+. .+.+++|+++++++++. .+++++|++|+|++++++
T Consensus 19 ~~~i~l~~~~~~----~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~ 90 (335)
T 1uu1_A 19 RDKTYLALNENP----FPFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIY 90 (335)
T ss_dssp CCSEEESSCCCS----SCCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHH
T ss_pred CcceECCCCCCC----CCCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHH
Confidence 468999999854 5678999999999874333456765 36899999999999532 257789999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHH
Q 014603 125 VILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
.+++++ ||+|+++ |+|+++...++..|.+++.++.+ +++.+|++.+ ++++++++++|+||||.+++.++
T Consensus 91 ~~~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~ 159 (335)
T 1uu1_A 91 VMMLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREE 159 (335)
T ss_dssp HHHHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHH
T ss_pred HHHHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHH
Confidence 999998 8999999 99999999999999999888874 3456787776 46889999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
+++|+++| | ++|+||+|+.+.+. .. +..++..+++++++|+||.|+++|+|+||++++ ++++++
T Consensus 160 l~~l~~~~---~-~li~De~~~~~~~~--~~--~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~--------~~~~~~ 223 (335)
T 1uu1_A 160 IERILKTG---A-FVALDEAYYEFHGE--SY--VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS--------EKFIDA 223 (335)
T ss_dssp HHHHHHTT---C-EEEEECTTHHHHCC--CC--GGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC--------HHHHHH
T ss_pred HHHHHHhC---C-EEEEECcchhhcch--hH--HHHhhhCCCEEEEecchhhcCCcccCeEEEEeC--------HHHHHH
Confidence 99998877 7 89999999976532 11 222333456899999999998899999999985 567777
Q ss_pred HHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCC
Q 014603 285 IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN 364 (422)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 364 (422)
+...... .+++.+.+.++.++|+. ..++++.+++++++++.+.+.|+++ ++. + .|.+++|+|+.++..
T Consensus 224 l~~~~~~-~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~~~~~~~~~~~------ 291 (335)
T 1uu1_A 224 YNRVRLP-FNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-I-TDSRGNFVFVFMEKE------ 291 (335)
T ss_dssp HHHHSCT-TCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCCCSSEEEEECCTH------
T ss_pred HHHhcCC-CCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHC-CcE-E-cCCCCeEEEEECCCC------
Confidence 7765533 47888999999999986 4578888899999999999999987 665 3 466678999888631
Q ss_pred CHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHH
Q 014603 365 SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 365 ~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
+..++...+. ++||.+.|+ .+++|+|++. ++++++++++|+++
T Consensus 292 ~~~~~~~~l~-~~gi~v~~~-----~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 292 EKERLLEHLR-TKNVAVRSF-----REGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHH-HHTEEEEEE-----TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHH-HCCEEEEEC-----CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 3456666665 569999982 5789999975 46799999988753
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=290.15 Aligned_cols=338 Identities=14% Similarity=0.139 Sum_probs=259.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
++..+|||+.|.+ +++++++.+.+++.+.+... ....|.+..|..++++.+++++.+.+| .+++++|+|++
T Consensus 41 ~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~~~ggt 113 (398)
T 3a2b_A 41 DGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAILFSTGF 113 (398)
T ss_dssp TTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEEESSHH
T ss_pred CCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEEECCHH
Confidence 4667899999975 13557899999999887642 223455566777888888888776554 35899999999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC----CceEEEEeCCCCCc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE----NTVALVIINPGNPC 196 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p~npt 196 (422)
+|+..++++++++||.|+++.|+|..+...++..|.+++.++. .|++.|++.+++ +++++++++|+|||
T Consensus 114 ~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~npt 186 (398)
T 3a2b_A 114 QSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSME 186 (398)
T ss_dssp HHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTT
T ss_pred HHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCC
Confidence 9999999999999999999999999999999999999888874 478999988866 68899999999999
Q ss_pred ccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC-eEEEecCccccCCCCceeEEEEeeCCCCc
Q 014603 197 GNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGI 275 (422)
Q Consensus 197 G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~s~sK~~~~~G~r~G~~~~~~~~~~ 275 (422)
|.+++ +++|.++|+++|+++|+||+|+.+.++..........+..++ +++++|+||+++++| ||++++
T Consensus 187 G~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~----- 255 (398)
T 3a2b_A 187 GDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGD----- 255 (398)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEEC-----
T ss_pred CCccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeC-----
Confidence 99975 788899999999999999999876553211111111222234 599999999998778 999985
Q ss_pred ccchhHHHHHHhh-h-hhccCcchHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEE
Q 014603 276 LQDSGIVDSIKSF-L-NISSDPATFIQG-AVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVM 352 (422)
Q Consensus 276 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~ 352 (422)
+++++.+... . ....+.+.+.+. ++.++|+.. .++++.+++++++++.+.+.|+++ ++. +..|. |+++|
T Consensus 256 ---~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-g~~~~ 327 (398)
T 3a2b_A 256 ---ADVIDFLKHNARSVMFSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFD-LGATE-SPILP 327 (398)
T ss_dssp ---HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCC-BCSCC-SSEEE
T ss_pred ---HHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCC-cCCCC-CCEEE
Confidence 4677777664 2 222334445554 556777652 346678889999999999999988 776 33444 78899
Q ss_pred EecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.++... +..++...+.++ ||.+.||..|.. .+++||+++ ++++++++++++|+++++++.
T Consensus 328 ~~~~~~~-----~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 328 IFIRSNE-----KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp EECCCHH-----HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred EEcCCHH-----HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9886321 345666666555 999999988753 579999998 589999999999999998754
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=289.39 Aligned_cols=336 Identities=15% Similarity=0.211 Sum_probs=254.7
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC------CCCCCC--CCCCHHHHHHHHHHHhhcCCCCC-CCCCEE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR------FNCYSS--TVGILPARRAIADYLNRDLPYKL-SPDDVY 114 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~~~i~ 114 (422)
++++|+|+.|.++ +.|+.+.+++.+++.... ...|++ ..+..++|++++++++ . ++++++
T Consensus 26 g~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~------~~~~~~v~ 94 (420)
T 1t3i_A 26 GHPLVYLDNAATS-----QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN------ARSPREIV 94 (420)
T ss_dssp TEECEECBTTTCC-----CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEE
T ss_pred CCceEEecCCccC-----CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcC------CCCCCeEE
Confidence 4568999999854 567899999999886521 123443 3567889999999983 3 568999
Q ss_pred EecCHHHHHHHHHHHh----cCCCCEEEecCCCccc----hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceE
Q 014603 115 LTLGCTQAIEVILTVL----ARPGANILLPRPGFPY----YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186 (422)
Q Consensus 115 ~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 186 (422)
+|+|+++|++.++.++ +++||+|+++.|+|++ +...++..|.+++.++.+ .++.+|++.+++.+++++++
T Consensus 95 ~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~ 172 (420)
T 1t3i_A 95 YTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKL 172 (420)
T ss_dssp EESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEE
T ss_pred EcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCCCceE
Confidence 9999999999999999 8999999999999998 556677789999988875 45668999999999888999
Q ss_pred EEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEE
Q 014603 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266 (422)
Q Consensus 187 i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~ 266 (422)
+++++|+||||.+++ +++|.++|+++|+++|+|++|+.... ...+..++ ..+++.|+||.++++| +||
T Consensus 173 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~~~~~~~~---~di~~~s~sK~~~~~g--~G~ 240 (420)
T 1t3i_A 173 VTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY----PLDVQLID---CDWLVASGHKMCAPTG--IGF 240 (420)
T ss_dssp EEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHHT---CSEEEEEGGGTTSCTT--CEE
T ss_pred EEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc----cCchhhcC---CCEEEEehhhhcCCCc--eEE
Confidence 999999999999987 78889999999999999999986321 11233333 3488999999887777 899
Q ss_pred EEeeCCCCcccchhHHHHHHhhhh---------------------hccCcchHHHHHHHH-HHhhchHHHHHHHHHHHHH
Q 014603 267 LVTSDPNGILQDSGIVDSIKSFLN---------------------ISSDPATFIQGAVPQ-ILEKTEEEFFSKITDILRE 324 (422)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~a~~~-~l~~~~~~~~~~~~~~~~~ 324 (422)
++++ +++.+++..... +..+.+.+.+.++.. +++...+.++++..+++++
T Consensus 241 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 312 (420)
T 1t3i_A 241 LYGK--------EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 312 (420)
T ss_dssp EEEC--------HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEc--------hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9986 467666654321 112344455554443 5554333457788899999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCC-----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC--------CCCC
Q 014603 325 TADICCDRLKEIPCITCPKKPE-----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV--------GLKD 391 (422)
Q Consensus 325 ~~~~l~~~L~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~ 391 (422)
+++.+.+.|++++++.+. .|. .+.++++.++.. +..++... +.++||.+.+|..| +..+
T Consensus 313 ~~~~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~g~~~ 384 (420)
T 1t3i_A 313 LTHYLWQGLGQIPQLRLY-GPNPKHGDRAALASFNVAGL------HASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASG 384 (420)
T ss_dssp HHHHHHHHHHTCTTEEEE-SCCGGGSCBCSEEEEEETTB------CHHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCeEEe-CCCccccccCCEEEEEECCC------CHHHHHHH-HHHCCeEEeeccccchHHHHhcCCCC
Confidence 999999999998887733 443 244555566531 45566554 56779999998644 3368
Q ss_pred eEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 392 WLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 392 ~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
++||+++ ++++++++++++|+++++++++
T Consensus 385 ~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 385 SARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 5899999999999999887643
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=289.19 Aligned_cols=334 Identities=16% Similarity=0.183 Sum_probs=251.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--CCC------CCCCCCCHHHHHHHHHHHhhcCCCCC-CCCCE
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--FNC------YSSTVGILPARRAIADYLNRDLPYKL-SPDDV 113 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~------y~~~~g~~~lr~~ia~~l~~~~~~~~-~~~~i 113 (422)
+|.++++|+.+.++ +.++.+.+++.+++.... ... |.+..+..++|++++++++ . ++++|
T Consensus 20 ~g~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v 88 (406)
T 1kmj_A 20 NGLPLAYLDSAASA-----QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN------ARSAEEL 88 (406)
T ss_dssp TTEECEECCTTTCC-----CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGE
T ss_pred CCCceEEecCCccC-----CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC------CCCCCeE
Confidence 35578999999854 467899999999887531 111 2234567889999999983 3 56899
Q ss_pred EEecCHHHHHHHHHHHh----cCCCCEEEecCCCccch----HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCce
Q 014603 114 YLTLGCTQAIEVILTVL----ARPGANILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTV 185 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 185 (422)
++|+|+++|++.++.++ +++||+|+++.|+|++. ...++..|.+++.++.++ ++.+|++.|++.++++++
T Consensus 89 ~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~ 166 (406)
T 1kmj_A 89 VFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDEKTR 166 (406)
T ss_dssp EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCTTEE
T ss_pred EEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhccCCe
Confidence 99999999999999999 89999999999999764 344666799999888753 456899999999988899
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeE
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 265 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G 265 (422)
++++++|+||||.+++ +++|.++|+++|+++|+|++|+... ....+...+ ..+++.|+||.++++| +|
T Consensus 167 ~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~----~~~~~~~~~---~d~~~~s~~K~~g~~G--~G 234 (406)
T 1kmj_A 167 LLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMH----HPVDVQALD---CDFYVFSGHKLYGPTG--IG 234 (406)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTT----SCCCHHHHT---CSEEEEEGGGTTSCTT--CE
T ss_pred EEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCC----CCCcccccC---CCEEEEEchhccCCCC--cE
Confidence 9999999999999987 8888999999999999999998632 111222222 3488999999987777 89
Q ss_pred EEEeeCCCCcccchhHHHHHHhhhh----------------------hccCcchHHHHHHH-HHHhhchHHHHHHHHHHH
Q 014603 266 WLVTSDPNGILQDSGIVDSIKSFLN----------------------ISSDPATFIQGAVP-QILEKTEEEFFSKITDIL 322 (422)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~a~~-~~l~~~~~~~~~~~~~~~ 322 (422)
|++++ +++++++..... ...+.+.+.+.++. ++++...+.++++..+++
T Consensus 235 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 306 (406)
T 1kmj_A 235 ILYVK--------EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYE 306 (406)
T ss_dssp EEEEC--------HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEe--------HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99986 467666654321 11223445555444 566543344677888999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCC--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC--------CCCCe
Q 014603 323 RETADICCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV--------GLKDW 392 (422)
Q Consensus 323 ~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~~~~~ 392 (422)
+++++.+.+.|+++|++.+. .+ .++ ++++.++. .+..++...+ .++||.+.+|..| +.+++
T Consensus 307 ~~~~~~l~~~L~~~~~~~~~-~~~~~~~-~~~~~~~~------~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~ 377 (406)
T 1kmj_A 307 QNLMHYALSQLESVPDLTLY-GPQNRLG-VIAFNLGK------HHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAM 377 (406)
T ss_dssp HHHHHHHHHHHTTSTTEEEE-SCTTCCS-EEEEEETT------CCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCE
T ss_pred HHHHHHHHHHHhcCCCeEEe-cCCCcCC-EEEEEECC------CCHHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCe
Confidence 99999999999998887733 45 545 44445642 1456666544 6779999998754 33689
Q ss_pred EEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 393 LRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+||+++ +++++++++++.|+++++.+
T Consensus 378 iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 378 CRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 999998 48999999999999988764
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=282.06 Aligned_cols=318 Identities=13% Similarity=0.128 Sum_probs=247.2
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEec
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLP 140 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~ 140 (422)
+.++.+.+++.+.+.. .|++. ..++++.+++++.+.+| ++++ ++++|+|+++|++.++.+++++||+|+++
T Consensus 44 ~~~~~v~~a~~~~~~~----~~~~~--~~~~~~~~~~~la~~~g--~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~ 115 (393)
T 1vjo_A 44 NAHPSVLQAMNVSPVG----HLDPA--FLALMDEIQSLLRYVWQ--TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIG 115 (393)
T ss_dssp CCCHHHHHHHSSCCCC----TTSHH--HHHHHHHHHHHHHHHHT--CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCHHHHHHHhccccc----ccCHH--HHHHHHHHHHHHHHHhC--CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEE
Confidence 6678899988876543 45432 34666666666666554 4567 89999999999999999999999999999
Q ss_pred CCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCc
Q 014603 141 RPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI 217 (422)
Q Consensus 141 ~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~ 217 (422)
+|+|++ +...++..|.+++.++.++ ++.+|++.|++.+++ +++++++++|+||||.+++ +++|.++|+++|+
T Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~ 190 (393)
T 1vjo_A 116 VAGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREFGT 190 (393)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHHTC
T ss_pred cCChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHcCC
Confidence 999998 8888888999999998754 456899999999887 8899999999999999975 7888999999999
Q ss_pred EEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh------h--
Q 014603 218 MVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF------L-- 289 (422)
Q Consensus 218 ~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------~-- 289 (422)
++|+|++|+. +.....+... +..+++.|+||+++++| |+||++++ +++++++... .
T Consensus 191 ~li~Dea~~~----g~~~~~~~~~---~~di~~~s~sK~l~~~~-~~G~l~~~--------~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1vjo_A 191 LLLVDTVTSL----GGVPIFLDAW---GVDLAYSCSQKGLGCSP-GASPFTMS--------SRAIEKLQRRRTKVANWYL 254 (393)
T ss_dssp EEEEECTTTT----TTSCCCTTTT---TCSEEECCSSSTTCSCS-SCEEEEEC--------HHHHHHHHTCSSCCSCSTT
T ss_pred EEEEECCccc----cCcCCccccc---CccEEEEcCcccccCCC-ceEEEEEC--------HHHHHHHhccCCCCCceec
Confidence 9999999983 2222222222 33588999999988887 99999986 4566666321 0
Q ss_pred ------------hhcc-CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC---ceEEEE
Q 014603 290 ------------NISS-DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG---SMFVMV 353 (422)
Q Consensus 290 ------------~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~ 353 (422)
.... +++.+.+.++.++++...+.++++.+++++++++.+.+.|+++ ++.+. .|.+ +.++++
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~ 332 (393)
T 1vjo_A 255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLH-VEKEYRLPTLTTV 332 (393)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SCGGGBCSSEEEE
T ss_pred CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCccccCCcEEEE
Confidence 1122 6788889998888886444567888999999999999999988 77733 4543 356777
Q ss_pred ecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c--cChHHHHHHHHHHHHHH
Q 014603 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~--~~~~~l~~~~~~l~~~~ 415 (422)
.++.. .+..++...+.+++||.+.||..|..++++||++ + ++++++++++++|++++
T Consensus 333 ~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 333 CIPDG-----VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EcCCC-----CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 77532 2566777777655599999999877789999994 3 56778999999999876
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=277.06 Aligned_cols=322 Identities=14% Similarity=0.093 Sum_probs=249.1
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPR 141 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~ 141 (422)
+.++.+.+++.+.+.. .|++. ..++++.+++++.+.+|.. +++++++|+|+++|+..++.+++++||+|++++
T Consensus 30 ~~~~~v~~a~~~~~~~----~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~ 102 (386)
T 2dr1_A 30 ACFPEVLEIMKVQMFS----HRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTI 102 (386)
T ss_dssp CCCHHHHHHTTSCCCC----TTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCcHHHHHHHhccccc----ccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEc
Confidence 5678888888776532 45432 2566777777766655543 367899999999999999999999999999999
Q ss_pred CCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh--cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCc
Q 014603 142 PGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA--DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI 217 (422)
Q Consensus 142 ~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~ 217 (422)
|+|++ +...++..|.+++.++.++ ++.+|++.|++.+ .++++++++++|+||||.+.+ +++|.++|+++|+
T Consensus 103 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~ 177 (386)
T 2dr1_A 103 IGAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDK 177 (386)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTC
T ss_pred CCchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCC
Confidence 99998 8888888999999998754 4568999999988 467899999999999999965 7888999999999
Q ss_pred EEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH-----------
Q 014603 218 MVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK----------- 286 (422)
Q Consensus 218 ~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~----------- 286 (422)
++|+|++|+.+.+ ..++... +..+++.|+||++++++ ++||++++ +++++.+.
T Consensus 178 ~li~D~a~~~~~~----~~~~~~~---~~di~~~s~sK~~~~~~-g~G~~~~~--------~~~~~~~~~~~~~~~~~~~ 241 (386)
T 2dr1_A 178 LVFVDAVSAMGGA----DIKFDKW---GLDVVFSSSQKAFGVPP-GLAIGAFS--------ERFLEIAEKMPERGWYFDI 241 (386)
T ss_dssp EEEEECTTTBTTB----CCCTTTT---TCSEEEEETTSTTCCCS-SCEEEEEC--------HHHHHHHTTCTTCCSTTCH
T ss_pred eEEEEccccccCc----ccccccc---CCcEEEEeccccccCCC-ceEEEEEC--------HHHHHHHhcCCCCceEEeH
Confidence 9999999986433 1222222 33599999999987662 38999986 35666552
Q ss_pred -----hh---hhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---CceEEEEe
Q 014603 287 -----SF---LNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKKPE---GSMFVMVK 354 (422)
Q Consensus 287 -----~~---~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~ 354 (422)
.. ....++++.+.+.++.++|+...+. ++++.+++++++++.+.+.|+++ ++.+. .+. .+.++|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~ 319 (386)
T 2dr1_A 242 PLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDIL-AEPGHESPTITAVL 319 (386)
T ss_dssp HHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SCTTCBCSSEEEEE
T ss_pred HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeC-cCccccCCceEEEE
Confidence 11 1223467888898888888764333 47788999999999999999988 77733 443 36788888
Q ss_pred cCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 355 LNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
++.. .+..++...+.++ ||.+.+|..+...+++||+++ ++++++++++++|+++++++.
T Consensus 320 ~~~~-----~~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 320 TPPG-----IKGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp CCTT-----CCHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-----CCHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8632 2566777777555 999999987656789999998 689999999999999988763
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=275.76 Aligned_cols=331 Identities=15% Similarity=0.106 Sum_probs=245.2
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+.|+.+... ++++.+.+++.+++.+...+ .|....+..++++++++++ ++++++|++|+|++
T Consensus 3 ~yld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t 71 (384)
T 1eg5_A 3 VYFDNNATT-----RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCAT 71 (384)
T ss_dssp EECBTTTCC-----CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHH
T ss_pred EEEecCccC-----CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCeEEEECCHH
Confidence 566666633 67799999999988752111 1222345688999999999 45678999999999
Q ss_pred HHHHHHHHHhc----CCCCEEEecCCCccchHHHH---hhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 121 QAIEVILTVLA----RPGANILLPRPGFPYYEARA---THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 121 ~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+++..+++++. ++||+|+++.|+|+++...+ +..|.+++.++.++ ++.+|++.|++.++++++++++++|+
T Consensus 72 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~ 149 (384)
T 1eg5_A 72 ESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAAN 149 (384)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBC
T ss_pred HHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCC
Confidence 99999999987 79999999999998876555 66799999888753 46689999999998889999999999
Q ss_pred CCcccccCHHHHHHHHHHHHHcC--cEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLG--IMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~--~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
||||.+++ +++|.++|+++| +++|+|++|+. +....++..+ +..+++.|+||+++++| +||+++++
T Consensus 150 nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~~----~~~~~~~~~~---~~di~~~s~sK~~g~~G--~G~~~~~~ 217 (384)
T 1eg5_A 150 NEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQTI----GKIPFSLEKL---EVDYASFSAHKFHGPKG--VGITYIRK 217 (384)
T ss_dssp TTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTTT----TTSCCCCTTT---CCSEEEEEGGGGTSCTT--CEEEEECT
T ss_pred CCcccccC---HHHHHHHHHhcCCceEEEEEhhhhc----CCcccCchhc---CCCEEEecHHHhcCCCc--eEEEEEcC
Confidence 99999987 678888899999 99999999973 2112223322 23588999999988778 79999874
Q ss_pred CCCcccchhHHHHHHh----hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-
Q 014603 272 PNGILQDSGIVDSIKS----FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE- 346 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~- 346 (422)
... +...+.. .....++++.+.+.++.++|+.. ..++++.+++++++++.+.+.|++ +++.+. .+.
T Consensus 218 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~-~~~~ 288 (384)
T 1eg5_A 218 GVP------IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHII-TPLE 288 (384)
T ss_dssp TSC------CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEEC-SCTT
T ss_pred CCc------cccccccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEe-CCcc
Confidence 210 0111111 01133467888888888888753 346788889999999999999998 577633 332
Q ss_pred C--ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHH
Q 014603 347 G--SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSA 403 (422)
Q Consensus 347 ~--g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~ 403 (422)
+ +.++++.++.. +..++...+ .++||.+.+|..|+. .+++||+++ +++++
T Consensus 289 ~~~~~~~~~~~~~~------~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~ 361 (384)
T 1eg5_A 289 ISLPNTLSVSFPNI------RGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEE 361 (384)
T ss_dssp SBCTTEEEEECTTC------CHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHH
T ss_pred cCCCCEEEEEeCCC------CHHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHH
Confidence 1 34566666521 466676665 677999999876642 368999998 78999
Q ss_pred HHHHHHHHHHHHHHhc
Q 014603 404 LEDGLGRMKAFYDRHA 419 (422)
Q Consensus 404 l~~~~~~l~~~~~~~~ 419 (422)
+++++++|++++++++
T Consensus 362 i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 362 VDYFLKKIEEILSFLD 377 (384)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=275.51 Aligned_cols=335 Identities=13% Similarity=0.113 Sum_probs=248.6
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC----C--CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF----N--CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~----~--~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
+..+|||+.+.+- +++.+|.+.+++.+.+..... . .|+......++|+.++++++ .+ +.++++
T Consensus 42 g~~~id~~~~~~~---g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~------~~--~~i~~~ 110 (399)
T 3tqx_A 42 EKEVLNFCANNYL---GLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG------TD--DTILYS 110 (399)
T ss_dssp TEEEEECSSCCTT---SCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT------CS--EEEEES
T ss_pred CeeEEEeeccCcc---cccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC------CC--cEEEEC
Confidence 4568999999632 345678999999888765211 1 12233346899999999983 22 355555
Q ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeC
Q 014603 118 GCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~ 191 (422)
+|++++..++.+++++||.|+++.|+|..+...++..|.+++.++. .|++.|++.+++ +++++++++
T Consensus 111 sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~ 183 (399)
T 3tqx_A 111 SCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDG 183 (399)
T ss_dssp CHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEES
T ss_pred chHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeC
Confidence 6688999999999999999999999999999999999999888874 366788777654 789999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
|+||||.+++ +++|.++|+++|+++|+||+|+...+.......+...+. .+..++++|+||+++ |++.||++++
T Consensus 184 ~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~ 258 (399)
T 3tqx_A 184 VFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGH 258 (399)
T ss_dssp EETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEEC
T ss_pred CCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcC
Confidence 9999999987 889999999999999999999632222221111222221 233599999999986 4455999986
Q ss_pred CCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++++.+..... .++++++..+.++.++++... .+.++.+++++++++.+.+.|+++ ++.+. +..
T Consensus 259 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~ 326 (399)
T 3tqx_A 259 --------KEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV--PGN 326 (399)
T ss_dssp --------HHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC--CCS
T ss_pred --------HHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC--CCC
Confidence 467777766432 234667777778877877532 567888999999999999999988 77633 445
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.++|+.++... +..++...+.+ +||.+.|+..+.. .+++|++++ ++++++++++++|+++++++.
T Consensus 327 ~~~~~~~~~~~~-----~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 327 HPIIPVMLGDAQ-----LATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp SSEEEEEEECHH-----HHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCHH-----HHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 668888876421 34566666654 6999998765432 469999997 789999999999999998753
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=274.43 Aligned_cols=332 Identities=14% Similarity=0.067 Sum_probs=250.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCT 120 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~ 120 (422)
....++++.|. +++++.+.+++.+.+.. .|.+ .....++|+++++++ +++++ +|++|+|++
T Consensus 17 ~~~~~~~~~g~------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~------g~~~~~~i~~~~g~t 80 (393)
T 2huf_A 17 TPNKLLMGPGP------SNAPQRVLDAMSRPILG----HLHPETLKIMDDIKEGVRYLF------QTNNIATFCLSASGH 80 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHH------TCCCSEEEEESSCHH
T ss_pred CCCeEEecCCC------CCCCHHHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHh------CCCCCcEEEEcCcHH
Confidence 44556776664 46778999988876643 2322 245788999999998 44554 899999999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCG 197 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG 197 (422)
+|+..++.+++++||+|+++.|+|+++ ...++..|.+++.+++++ ++.+|++.|++.+++ +++++++++|+||||
T Consensus 81 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG 158 (393)
T 2huf_A 81 GGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV--GQSLSLDEIRDALLIHKPSVLFLTQGDSSTG 158 (393)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC--CCCCCHHHHHHHHhccCCcEEEEEccCCCcc
Confidence 999999999999999999999999874 334556799999998754 346899999999877 889999999999999
Q ss_pred cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcc
Q 014603 198 NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGIL 276 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~ 276 (422)
.+++ +++|.++|+++|+++|+|++++. +.....+... +..+++.|+||++ +++|+ ||++++
T Consensus 159 ~~~~---l~~i~~~~~~~~~~li~D~a~~~----~~~~~~~~~~---~~d~~~~s~sK~l~g~~G~--G~~~~~------ 220 (393)
T 2huf_A 159 VLQG---LEGVGALCHQHNCLLIVDTVASL----GGAPMFMDRW---EIDAMYTGSQKVLGAPPGI--TPVSFS------ 220 (393)
T ss_dssp EECC---CTTHHHHHHHTTCEEEEECTTTB----TTBCCCTTTT---TCSEEECCSSSTTCCCSSC--EEEEEC------
T ss_pred ccCC---HHHHHHHHHHcCCEEEEEccccc----CCCCcchhhc---CccEEEECCCcccccCCCe--EEEEEC------
Confidence 9987 78889999999999999999864 2212222222 2348889999974 56775 999986
Q ss_pred cchhHHHHHHhhh----h--------------------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 277 QDSGIVDSIKSFL----N--------------------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 277 ~~~~~~~~~~~~~----~--------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
+++++++.... . ..++++...+.++.++++...+..+++..++++++++.+.+.
T Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (393)
T 2huf_A 221 --HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRG 298 (393)
T ss_dssp --HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 46777765430 0 113556666777766776533345788889999999999999
Q ss_pred hhcCCCCCCCCCCC---CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c--cChHHHHH
Q 014603 333 LKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALED 406 (422)
Q Consensus 333 L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~--~~~~~l~~ 406 (422)
|+++ ++.+. .|. .+.++++.++.. .+..++...+++++||.+.+|..+...+++||++ + ++++++++
T Consensus 299 L~~~-g~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~ 371 (393)
T 2huf_A 299 LQDA-GFELY-ADPKDRLSTVTTIKVPQG-----VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDR 371 (393)
T ss_dssp HHHT-TCCBS-SCGGGBCTTEEEEECCTT-----CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHH
T ss_pred HHHc-CCeec-cCccccCCcEEEEEcCCC-----CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHH
Confidence 9988 77633 442 345777777521 1566777777666799999998776678999999 5 46889999
Q ss_pred HHHHHHHHHHHhcc
Q 014603 407 GLGRMKAFYDRHAK 420 (422)
Q Consensus 407 ~~~~l~~~~~~~~~ 420 (422)
++++|+++++++..
T Consensus 372 ~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 372 VLQVFQEAVAAVKP 385 (393)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999987654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=278.80 Aligned_cols=330 Identities=14% Similarity=0.107 Sum_probs=246.5
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC---CC---CCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR---FN---CYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~---~~---~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
++.++|+.+.+. +.++.+.+++.+.+.... .. .|+. ..+..++|+++++++ ++++++|++|+
T Consensus 15 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~------g~~~~~v~~~~ 83 (390)
T 1elu_A 15 ANKTYFNFGGQG-----ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDPNTITITD 83 (390)
T ss_dssp TTSEECCTTTCC-----CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCGGGEEEES
T ss_pred CCeEEecCCccC-----CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc------CCCHHHEEEeC
Confidence 457999988733 566889999988876421 01 3433 256789999999998 45778999999
Q ss_pred CHHHHHHHHHHHh-cCCCCEEEecCCCccchHHH----HhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 118 GCTQAIEVILTVL-ARPGANILLPRPGFPYYEAR----ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 118 g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
|++++++.+++++ +++||+|+++.|+|+++... ++..|.+++.++.++.+++.+|++.|++.++++++++++++|
T Consensus 84 g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 163 (390)
T 1elu_A 84 NVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHL 163 (390)
T ss_dssp SHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESB
T ss_pred ChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEecc
Confidence 9999999999999 89999999999999987543 466799999988764345678999999999888999999999
Q ss_pred CCCcccccCHHHHHHHHHHHH----HcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 193 GNPCGNVYTYQHLQKIAETAK----KLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~----~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
+||||.+++ +++|.++|+ ++|+++|+|++|+.. .....+... ...+++.|+||+ ..+|.++||++
T Consensus 164 ~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g----~~~~~~~~~---~~d~~~~s~~K~-~~~~~g~G~~~ 232 (390)
T 1elu_A 164 LWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAG----SLPLDFSRL---EVDYYAFTGHKW-FAGPAGVGGLY 232 (390)
T ss_dssp CTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBT----TBCCCTTTS---CCSEEEEESSST-TCCCTTCEEEE
T ss_pred ccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccC----CcCCChhhc---CCCEEEcccccc-ccCCCceEEEE
Confidence 999999987 788899999 999999999999852 212222222 234889999995 34556699999
Q ss_pred eeCCCCcccchhHHHHHHhh-----------------------hhhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHH
Q 014603 269 TSDPNGILQDSGIVDSIKSF-----------------------LNISSDPATFIQGAVPQILEKTEE-EFFSKITDILRE 324 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~ 324 (422)
+++ ++++.+... ....++++...+.++.++++...+ .++++..+++++
T Consensus 233 ~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~ 304 (390)
T 1elu_A 233 IHG--------DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQ 304 (390)
T ss_dssp ECT--------TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ECH--------HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 863 333433321 112345666777777777764332 347888999999
Q ss_pred HHHHHHHHhhcCCCCCCCCC-CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cCh
Q 014603 325 TADICCDRLKEIPCITCPKK-PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEP 401 (422)
Q Consensus 325 ~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~ 401 (422)
+++.+.+.|++++++.+... +..+.++++.++.. .+..++...+ .++||.+.+|. .++++||+++ .++
T Consensus 305 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~v~~~~---~~~~iRis~~~~~~~ 375 (390)
T 1elu_A 305 RSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSP-----LGHRAIVQKL-EEQRIYLRTIA---DPDCIRACCHYITDE 375 (390)
T ss_dssp HHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSS-----SCHHHHHHHH-HHTTEECEEET---TTTEEEEECCTTCCH
T ss_pred HHHHHHHHHHhcCCcEEecCccccccEEEEEcCCC-----CCHHHHHHHH-HHCCEEEEecC---CCCeEEEecccCCCH
Confidence 99999999999878773321 23344555577521 1466777776 56799999986 3579999986 789
Q ss_pred HHHHHHHHHHHH
Q 014603 402 SALEDGLGRMKA 413 (422)
Q Consensus 402 ~~l~~~~~~l~~ 413 (422)
+++++++++|++
T Consensus 376 ~~i~~~~~~l~~ 387 (390)
T 1elu_A 376 EEINHLLARLAD 387 (390)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=272.30 Aligned_cols=332 Identities=12% Similarity=0.037 Sum_probs=246.7
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
+.+.|+.+.+. ++++.+.+++.+.+.. ...+....+..++|+++++++ +++++++++|+|+++++..
T Consensus 8 ~~~yl~~~~~~-----~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~t~g~t~a~~~ 74 (392)
T 2z9v_A 8 DPVITLTAGPV-----NAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAM------RLSNKPVILHGEPVLGLEA 74 (392)
T ss_dssp CCSEECSSSCC-----CCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHT------TCSSCCEEESSCTHHHHHH
T ss_pred CcceeecCCCc-----CCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHh------CCCCCEEEEeCCchHHHHH
Confidence 44667666533 6678999988877653 111222335678899999988 4567899999999999999
Q ss_pred HHHHhcCCCCEEEecCCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh--cCCceEEEEeCCCCCcccccC
Q 014603 126 ILTVLARPGANILLPRPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALA--DENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 126 ~~~~l~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~--~~~~~~i~i~~p~nptG~~~~ 201 (422)
++++++++||+|++++|+|+++ ...++..|.+++.++.++ ++.+|++.|++.+ .++++++++++|+||||.+++
T Consensus 75 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 152 (392)
T 2z9v_A 75 AAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY--NEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP 152 (392)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC
T ss_pred HHHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC--CCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc
Confidence 9999999999999999999875 344455788999998754 3458999999988 457899999999999999986
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchh
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+++|.++|+++|+++|+|++|+. +....++..++ ..+++.|+||++ +++| +||++++ ++
T Consensus 153 ---l~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~~---~d~~~~s~sK~~~~~~g--~G~l~~~--------~~ 212 (392)
T 2z9v_A 153 ---IDAIGALVSAHGAYLIVDAVSSF----GGMKTHPEDCK---ADIYVTGPNKCLGAPPG--LTMMGVS--------ER 212 (392)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTTB----TTBSCCGGGGT---CSEEEECSSSTTCCCSC--CEEEEEC--------HH
T ss_pred ---HHHHHHHHHHcCCeEEEEccccc----CCccccccccc---ceEEEecCcccccCCCc--eeEEEEC--------HH
Confidence 67889999999999999999974 22222233333 248899999964 3456 5999986 45
Q ss_pred HHHHHHhhh---------------------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 014603 281 IVDSIKSFL---------------------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCI 339 (422)
Q Consensus 281 ~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 339 (422)
++++++... ...++++...+.++.++++...+..+++.+++++++++.+.+.|+++ ++
T Consensus 213 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~ 291 (392)
T 2z9v_A 213 AWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GL 291 (392)
T ss_dssp HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 666664310 11235566666667677765333337788899999999999999987 77
Q ss_pred CCCCCCC----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c--cChHHHHHHHHHHH
Q 014603 340 TCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALEDGLGRMK 412 (422)
Q Consensus 340 ~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~--~~~~~l~~~~~~l~ 412 (422)
.+. .|. .+.++++.++.. .+..++...+.+++||.+.+|..+...+++|+++ + ++++++++++++|+
T Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~ 365 (392)
T 2z9v_A 292 SVW-AASDSIASPTTTAVRTPDG-----VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALG 365 (392)
T ss_dssp CBS-SSSGGGBCTTEEEEECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred eec-cCCccccCCceEEEECCCC-----CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 633 422 366778887532 1566777777555599999998766678999995 4 78999999999999
Q ss_pred HHHHHhc
Q 014603 413 AFYDRHA 419 (422)
Q Consensus 413 ~~~~~~~ 419 (422)
++++++.
T Consensus 366 ~~~~~~~ 372 (392)
T 2z9v_A 366 GAMNAAG 372 (392)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=273.80 Aligned_cols=338 Identities=15% Similarity=0.107 Sum_probs=250.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-C-CCCCCCCC----CCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-A-RFNCYSST----VGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-~-~~~~y~~~----~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|..+|||+.|++ .+++.++.+.+++.+++.. + ....|... ....++++.++++++ . +..+++
T Consensus 62 ~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g------~--~~~i~~ 130 (427)
T 2w8t_A 62 RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG------T--TGAIVF 130 (427)
T ss_dssp TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT------C--SEEEEE
T ss_pred CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC------C--CceEEe
Confidence 4667899999973 2356789999999988865 2 11223222 334788888888882 2 356777
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC----CceEEEEeCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE----NTVALVIINP 192 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~i~i~~p 192 (422)
++|++++..++.+++++||.|+++.|+|.++...++..|.+++.++. .|++.|++.+++ ++++++++++
T Consensus 131 ~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~ 203 (427)
T 2w8t_A 131 STGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGV 203 (427)
T ss_dssp SCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESE
T ss_pred cCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCC
Confidence 77788999999999999999999999999999999999998887762 588999988865 6788999999
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC-CCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
+||+|.+++ +++|.++|+++|+++|+||+|+.+.++.........++.. +.++++.|+||.++++| ||+++++
T Consensus 204 ~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~ 277 (427)
T 2w8t_A 204 YSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNH 277 (427)
T ss_dssp ETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECC
T ss_pred CCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeCH
Confidence 999999976 8889999999999999999999876642211111112211 33699999999998776 9999863
Q ss_pred CCCcccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 272 PNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
++++.+.... ..++++++..++++.++|+... .+++.+++++++++++.+.|+++ ++.+...+..+
T Consensus 278 --------~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 346 (427)
T 2w8t_A 278 --------PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS 346 (427)
T ss_dssp --------TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCS
T ss_pred --------HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCC
Confidence 3555554431 2234567777777777776522 24677888999999999999987 66632133156
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHhccc
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
.++|+.++.. .+..++...+.+ +||.+.++..|+. .+++|++++ ++++++++++++|+++++++.++
T Consensus 347 ~~~~~~~~~~-----~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 418 (427)
T 2w8t_A 347 AIVAVMLEDQ-----EQAAMMWQALLD-GGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGVI 418 (427)
T ss_dssp SEEEEEESSH-----HHHHHHHHHHHH-TTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECCH-----HHHHHHHHHHHH-CCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 7888888632 124566666654 5999999887764 368999998 58999999999999999887543
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=275.79 Aligned_cols=337 Identities=15% Similarity=0.138 Sum_probs=245.6
Q ss_pred hccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC----------CCCCHHHHHHHHHHHhhcCCCCCC
Q 014603 40 NKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS----------TVGILPARRAIADYLNRDLPYKLS 109 (422)
Q Consensus 40 ~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~l~~~~~~~~~ 109 (422)
+..++.+.|.|+.+.+. ++++.+.+++.+++.......++. .....++++.+++++ +++
T Consensus 16 ~~~~~~~~iyld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------~~~ 84 (423)
T 3lvm_A 16 VYRAMKLPIYLDYSATT-----PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV------GAD 84 (423)
T ss_dssp ----CCSSEECBTTTCC-----CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCC
T ss_pred cccccCCCEeecCCCcC-----CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc------CCC
Confidence 34468889999988744 678999999998876111111111 123467888888888 457
Q ss_pred CCCEEEecCHHHHHHHHHHHhcC----CCCEEEecCCCccchHHHH---hhCCCeEEEeeccCCCCcccCHHHHHHhhcC
Q 014603 110 PDDVYLTLGCTQAIEVILTVLAR----PGANILLPRPGFPYYEARA---THSHLEVRHFDLLPAKGWEVDLDAVEALADE 182 (422)
Q Consensus 110 ~~~i~~~~g~~~a~~~~~~~l~~----~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 182 (422)
+++|++|+|+++|++.++.++.+ +||+|+++.++|+++...+ ...|.+++.++.++ ++.+|++.|++.+++
T Consensus 85 ~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~ 162 (423)
T 3lvm_A 85 PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRD 162 (423)
T ss_dssp GGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCT
T ss_pred CCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCC
Confidence 78999999999999999998873 7999999999999887666 44599999988764 456899999999998
Q ss_pred CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 183 ~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
+++++++++|+||||.+++ +++|.++|+++|++||+|++|+.. .....+...+ ..+++.|+||.++++|
T Consensus 163 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~----~~~~~~~~~~---~di~~~s~sK~~g~~g- 231 (423)
T 3lvm_A 163 DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVG----KLPIDLSQLK---VDLMSFSGHKIYGPKG- 231 (423)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT----TSCCCTTTSC---CSEEEEESTTTTSCSS-
T ss_pred CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcC----CCCcChhhcC---CCEEEechHHhcCCCC-
Confidence 9999999999999999987 777889999999999999998752 2112222333 3488999999877666
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhhh--------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSFL--------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
+|++++++. ..+.+.... ...++++...+.++..+++.. ..++++..++++++++.+.+.|+
T Consensus 232 -~G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 232 -IGALYVRRK--------PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp -CEEEEECBT--------TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -eEEEEEecc--------ccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 899998642 222222211 123456667777777777643 23478889999999999999999
Q ss_pred cCCCCCCCCCCCC---ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCe
Q 014603 335 EIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDW 392 (422)
Q Consensus 335 ~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~ 392 (422)
++|++.+. .+.. +.++++.++.. +..++...+ .+ |.+.+|..|.. .++
T Consensus 302 ~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~l~~~l-~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (423)
T 3lvm_A 302 DIEEVYLN-GDLEHGAPNILNVSFNYV------EGESLIMAL-KD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSS 371 (423)
T ss_dssp TSTTEEEE-SCSTTBCTTEEEEEETTS------CHHHHHHHT-TT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTE
T ss_pred cCCCEEEe-CCccccCCCeEEEEeCCC------CHHHHHHHH-hh--heeccCccccCCCccccHHHHHhCCCccccCce
Confidence 99887743 3332 23455555421 456665554 44 99999877543 388
Q ss_pred EEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 393 LRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+||+++ ++++++++++++|+++++++++
T Consensus 372 iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 372 IRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999998 5789999999999999987754
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=270.82 Aligned_cols=328 Identities=15% Similarity=0.108 Sum_probs=246.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-CC---CCCC--CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-AR---FNCY--SSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-~~---~~~y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
++..+|||+.|.+ +++++++.+.+++.+.+.. .. ...| +...+..++|+++++++ +++ +.+++
T Consensus 37 ~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~------g~~--~~i~~ 105 (384)
T 1bs0_A 37 DDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL------GYS--RALLF 105 (384)
T ss_dssp TTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH------TCS--EEEEE
T ss_pred CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh------CCC--cEEEe
Confidence 4667899999863 2346788999999988765 21 1123 34466789999999998 333 45666
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC---ceEEEEeCCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN---TVALVIINPG 193 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~i~i~~p~ 193 (422)
++|++++..++++++++||.|+++.|+|..+...++..|.+++.++. .|++.|++.+++. ++++++++|+
T Consensus 106 ~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~ 178 (384)
T 1bs0_A 106 ISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVF 178 (384)
T ss_dssp SCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBC
T ss_pred CCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 66699999999999999999999999999998888989999888763 4788998887653 6788888999
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC--CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG--NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~--~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
||||.+++ +++|.++|+++|+++|+||+|+.+.+. +... ...++.. ..++++|+||+++++| ||++++
T Consensus 179 nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~~-~di~~~s~sK~~~~~G---G~~~~~- 248 (384)
T 1bs0_A 179 SMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS--CWLQKVK-PELLVVTFGKGFGVSG---AAVLCS- 248 (384)
T ss_dssp TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH--HHHTTCC-CSEEEEESSSTTSSCC---EEEEEC-
T ss_pred CCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCch--HHhcCCC-CcEEEeeccchhhccC---cEEEeC-
Confidence 99999987 778899999999999999999865432 2211 1122211 2389999999998777 999985
Q ss_pred CCCcccchhHHHHHHhhh-hh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 272 PNGILQDSGIVDSIKSFL-NI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
+++++.+.... .. +.+++++.+.++.++++...+.+.++.+++++++++.+.+.|+++ ++. + .+..+
T Consensus 249 -------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~~~ 318 (384)
T 1bs0_A 249 -------STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFT-L-ADSCS 318 (384)
T ss_dssp -------HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE-E-CSCCS
T ss_pred -------HHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCc-c-cCCCC
Confidence 46777776542 12 235778888888888875322256788899999999999999988 666 3 24556
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
.++|+.++.. .+..++...+.+ +||.+.++..++. .+++||+++ ++++++++++++|+++
T Consensus 319 ~~~~~~~~~~-----~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 319 AIQPLIVGDN-----SRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp SBCCEEEESH-----HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCH-----HHHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 6777777532 134566666654 5999999887653 378999998 4899999999998764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=271.64 Aligned_cols=322 Identities=12% Similarity=0.073 Sum_probs=244.2
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSST--VGILPARRAIADYLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANI 137 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~V 137 (422)
.++++.+.+++.+.+.. .|.+. ....++|+++++++ +.+++ +|++|+|+++++..++.+++++||+|
T Consensus 27 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~------~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~v 96 (396)
T 2ch1_A 27 SNCSKRVLTAMTNTVLS----NFHAELFRTMDEVKDGLRYIF------QTENRATMCVSGSAHAGMEAMLSNLLEEGDRV 96 (396)
T ss_dssp CCCCHHHHHHTTSCCCC----TTCHHHHHHHHHHHHHHHHHH------TCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCHHHHHHhcccccc----CCChhHHHHHHHHHHHHHHHh------CCCCCcEEEECCcHHHHHHHHHHHhcCCCCeE
Confidence 35678888888765432 24331 23789999999999 45666 89999999999999999999999999
Q ss_pred EecCCCccchH--HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 138 LLPRPGFPYYE--ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 138 l~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
++++|+|+++. ..++..|.+++.++.++ ++.+|++.+++.+++ +++++++++|+||||.+++ +++|.++|++
T Consensus 97 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~ 171 (396)
T 2ch1_A 97 LIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQ 171 (396)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHH
T ss_pred EEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHHHHHH
Confidence 99999999874 46778899999998753 456899999998877 7899999999999999987 7888899999
Q ss_pred cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh------
Q 014603 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF------ 288 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------ 288 (422)
+|+++|+|++|+. +.....+..++. .+++.|++|.++. +.++|+++++ +++++.+...
T Consensus 172 ~~~~li~Dea~~~----g~~~~~~~~~~~---d~~~~s~~K~~~~-~~g~g~~~~~--------~~~~~~~~~~~~~~~~ 235 (396)
T 2ch1_A 172 HDCLLIVDAVASL----CGVPFYMDKWEI---DAVYTGAQKVLGA-PPGITPISIS--------PKALDVIRNRRTKSKV 235 (396)
T ss_dssp TTCEEEEECTTTB----TTBCCCTTTTTC---CEEECCCC-CCCC-CSSCEEEEEC--------HHHHHHHHTCSSCCSC
T ss_pred cCCEEEEEccccc----cCCccchhhcCc---CEEEEcCCccccC-CCCeEEEEEC--------HHHHHhhhhccCcccc
Confidence 9999999999984 222223333332 2677899997543 2346999886 3555555321
Q ss_pred ------------------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC---
Q 014603 289 ------------------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG--- 347 (422)
Q Consensus 289 ------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--- 347 (422)
....++++...+.++.++++...+.++++.+++++++++.+.+.|+++ ++.+. .+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~ 313 (396)
T 2ch1_A 236 FYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIF-VKDPRHR 313 (396)
T ss_dssp GGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBS-SCSGGGB
T ss_pred eEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeec-cCCcccc
Confidence 011235677788888888876444568888999999999999999988 77633 4443
Q ss_pred -ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c--cChHHHHHHHHHHHHHHHHhcc
Q 014603 348 -SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 348 -g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+.++++.++.. .+..++...|++++||.+.+|..+...+++||++ + ++++++++++++|+++++++..
T Consensus 314 ~~~~~~~~~~~~-----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 314 LPTVTGIMIPKG-----VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp CTTEEEEECCTT-----CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCceEEEEcCCC-----CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 24777777532 2567777777666799999988766678999999 4 4789999999999999987653
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=266.20 Aligned_cols=335 Identities=16% Similarity=0.097 Sum_probs=244.2
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC---CCCC----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN---CYSS----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~---~y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+.|+.+.++ ++++.+++++.+.+.+...+ .|.. .....++|+++++++ +++++++++|+|++
T Consensus 2 ~yld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g~t 70 (382)
T 4eb5_A 2 AYFDYTSAK-----PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV------NGGGGTVVFTSGAT 70 (382)
T ss_dssp CBCBTTTCC-----CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TCTTEEEEEESSHH
T ss_pred eeeccCCCC-----CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEcCchH
Confidence 345555433 67899999999988752111 1332 134678888999988 45678999999999
Q ss_pred HHHHHHHHHhc----CCCCEEEecCCCccchHHHHh---hCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 121 QAIEVILTVLA----RPGANILLPRPGFPYYEARAT---HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 121 ~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+|+..++.++. ++||+|++++|+|+++...+. ..|.+++.+++++ ++.+|++.|++.++++++++++++|+
T Consensus 71 ~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~ 148 (382)
T 4eb5_A 71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHAN 148 (382)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCCeEEEEeccC
Confidence 99999999987 899999999999988766554 3688999888753 45689999999998889999999999
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
||||.+++ +++|.++|+++|++ |+|++|+. +....++..++ ..+++.|+||+++.+| +|++++++..
T Consensus 149 nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~----g~~~~~~~~~~---~di~~~s~sK~~g~~g--~G~~~~~~~~ 215 (382)
T 4eb5_A 149 NEIGTIQP---VEEISEVLAGKAAL-HIDATASV----GQIEVDVEKIG---ADMLTISSNDIYGPKG--VGALWIRKEA 215 (382)
T ss_dssp TTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB----TTBCCCHHHHT---CSEEEEETGGGTCCSS--CEEEEEETTC
T ss_pred CCccccCC---HHHHHHHHHHCCCE-EEEcchhc----CCcccCccccC---CCEEEeehHHhcCCCc--eEEEEEcccc
Confidence 99999986 67889999999999 99999984 22112222222 3488999999976666 7999887532
Q ss_pred CcccchhHHHHH-HhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC---ce
Q 014603 274 GILQDSGIVDSI-KSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG---SM 349 (422)
Q Consensus 274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~ 349 (422)
.+. ...... .......++++...+.++..+++... .++++.+++++++++.+.+.|+++|++.+. .+.+ +.
T Consensus 216 ~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~ 290 (382)
T 4eb5_A 216 KLQ---PVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLN-GHPEKRLPN 290 (382)
T ss_dssp CCC---CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEC-SCSSSBCTT
T ss_pred ccC---ceecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEe-CCcccCCCC
Confidence 111 000000 00111234566666777777776433 357888899999999999999998887633 4431 44
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~~~ 408 (422)
++++.++. .+..++...+ .++||.+.+|..|.. .+++||+++ ++++++++++
T Consensus 291 ~~~~~~~~------~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~ 363 (382)
T 4eb5_A 291 NVNVRFSY------IEGESIVLSL-DMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLL 363 (382)
T ss_dssp EEEEEETT------SCHHHHHHHH-HHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHH
T ss_pred EEEEEeCC------cCHHHHHHHH-HHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHH
Confidence 66777652 1466777766 467999999876432 479999998 6899999999
Q ss_pred HHHHHHHHHhcc
Q 014603 409 GRMKAFYDRHAK 420 (422)
Q Consensus 409 ~~l~~~~~~~~~ 420 (422)
++|+++++++++
T Consensus 364 ~~l~~~~~~~~~ 375 (382)
T 4eb5_A 364 EVLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=271.65 Aligned_cols=335 Identities=16% Similarity=0.125 Sum_probs=243.3
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC------CCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR------FNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
|.++++|..++.. .++.+|.+.+++.+++.... ...|+...+..++|++++++++ . +++|++++
T Consensus 45 g~~~i~~~~~~~~---~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~s 114 (401)
T 2bwn_A 45 KQDITVWCGNDYL---GMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ------K-EAALVFSS 114 (401)
T ss_dssp EEEEEECSCSCTT---SGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT------C-SEEEEESC
T ss_pred CCcEEEeeCCCcc---cCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CcEEEECC
Confidence 4567888876532 24456789999999886411 1235555678899999999983 2 46777776
Q ss_pred CHHHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc----CCceEEEEeC
Q 014603 118 GCTQAIEVILTVLA--RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD----ENTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~i~i~~ 191 (422)
|++ ++..++..+. .+||+|+++.|+|+++...++..|.+++.++.+ |++.+++.++ ++++++++++
T Consensus 115 G~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~ 186 (401)
T 2bwn_A 115 AYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFES 186 (401)
T ss_dssp HHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEES
T ss_pred cHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEec
Confidence 666 7777776653 589999999999999988888899998888752 6778887765 5788999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
|+||||.+++ +++|.++|+++|+++|+||+|+...++......+...+. ....++++|+||.|+++| ||++++
T Consensus 187 ~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~ 260 (401)
T 2bwn_A 187 VYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS 260 (401)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC
T ss_pred CcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecC
Confidence 9999999986 788899999999999999999954443221111111121 123588999999998888 999885
Q ss_pred CCCCcccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++.+.+.... ....+.+++.+.++.++++...+..+++.+++++++++.+.+.|+++ ++.+. .+.+
T Consensus 261 --------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~ 330 (401)
T 2bwn_A 261 --------ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII-DHGS 330 (401)
T ss_dssp --------HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSS
T ss_pred --------HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCC
Confidence 46666665432 12223345777777777765433446788889999999999999987 77633 5554
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC---CeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK---DWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.++|+.++.. .+..++...+++++||.+.|+..|+.+ +++|++++ ++++++++++++|+++++++
T Consensus 331 -~~~~~~~~~~-----~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 331 -HIVPVVIGDP-----VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp -SCEEEECCCH-----HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred -CeEEEEeCCh-----HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 4788888632 134566666655679999998876543 58999998 68999999999999887653
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=270.32 Aligned_cols=333 Identities=15% Similarity=0.113 Sum_probs=250.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-CCC---CCCC--CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-ARF---NCYS--STVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-~~~---~~y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
++..+|||+.+.+- +++.++.+.+++.+.+.. ... ..|. ...+..++|+++++++ +++ + .+++
T Consensus 43 ~g~~~id~~~~~~~---g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~------g~~-~-~i~~ 111 (401)
T 1fc4_A 43 DGSHVINFCANNYL---GLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL------GME-D-AILY 111 (401)
T ss_dssp TSCEEEECCCSCTT---SCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH------TCS-E-EEEE
T ss_pred CCccEEEeeccCcc---cccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh------CCC-c-EEEe
Confidence 47789999999532 223589999999988764 211 1221 1356789999999999 334 4 4455
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEe
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVII 190 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~ 190 (422)
++|++++..++++++++||.|+++.|+|..+...++..|.+++.++. .|++.+++.+++ ++++++++
T Consensus 112 ~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~ 184 (401)
T 1fc4_A 112 SSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp SCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred CChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEe
Confidence 66688999999999999999999999998888888888998887762 478888887754 68899999
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-cccc-CCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEE
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAF-GNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWL 267 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~-~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~ 267 (422)
+|+||||.+++ +++|.++|+++|+++|+||+|+ ++.+ ++........+.. +..++++|+||++ +++| ||+
T Consensus 185 ~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g---G~~ 257 (401)
T 1fc4_A 185 GVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG---GYT 257 (401)
T ss_dssp SEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC---EEE
T ss_pred CCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC---EEE
Confidence 99999999987 8888999999999999999996 6542 3332211122222 2358999999998 5555 999
Q ss_pred EeeCCCCcccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014603 268 VTSDPNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 344 (422)
+++ +++++.+.... ..+.+++.+.++++.++++... ..++.+++++++++.+.+.|+++ ++. + .
T Consensus 258 ~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~ 324 (401)
T 1fc4_A 258 AAR--------KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE--AGSELRDRLWANARQFREQMSAA-GFT-L-A 324 (401)
T ss_dssp EEC--------HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHT-TCC-B-C
T ss_pred EcC--------HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCc-c-c
Confidence 985 46777776543 1245778889999888887522 14677888999999999999988 776 3 2
Q ss_pred CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+..+.++|+.++.. .+..++...+. ++||.+.+|..|+. .+++||+++ ++++++++++++|+++++++.
T Consensus 325 ~~~~~~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 325 GADHAIIPVMLGDA-----VVAQKFARELQ-KEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp CSSSSEEEEEEECH-----HHHHHHHHHHH-HTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEcCCh-----HHHHHHHHHHH-HCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 66788889888632 03455666664 55999999887754 358999998 689999999999999998764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=276.50 Aligned_cols=326 Identities=13% Similarity=0.099 Sum_probs=241.0
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--------CCCCCCCCCCHHHHHH-HHHHHhhcCCCCCCCCCEE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--------FNCYSSTVGILPARRA-IADYLNRDLPYKLSPDDVY 114 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--------~~~y~~~~g~~~lr~~-ia~~l~~~~~~~~~~~~i~ 114 (422)
.+++++|+.|.+. .++++.+.+++.+.+.... ...|.+..+..++|++ ++++++ .+ +|+
T Consensus 6 ~~~~i~ld~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~------~~--~v~ 73 (371)
T 2e7j_A 6 TKDFINIDPLQTG----GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG------CD--VAR 73 (371)
T ss_dssp --CCEECCHHHHT----CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT------SS--EEE
T ss_pred CCCcEEecccccC----CCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC------CC--EEE
Confidence 4567888886533 3678999999998876531 1234456788999999 999983 33 899
Q ss_pred EecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEee--ccCCCCcccCHHHHHHhhc-----CCceEE
Q 014603 115 LTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFD--LLPAKGWEVDLDAVEALAD-----ENTVAL 187 (422)
Q Consensus 115 ~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~d~~~l~~~~~-----~~~~~i 187 (422)
+|+|+++|+..++++++++||+|++++|+|+++...++..|.+++.++ .+ .++.+|++.|++.++ ++++++
T Consensus 74 ~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~v 151 (371)
T 2e7j_A 74 VTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY--PDYAITPENFAQTIEETKKRGEVVLA 151 (371)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT--TTCCCCHHHHHHHHHHHTTTSCEEEE
T ss_pred EeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC--CCCCcCHHHHHHHHHhhcccCCeEEE
Confidence 999999999999999999999999999999999888999999999988 54 346789999999887 688999
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
++++|+||||.+++ +++|.++|+++|+++|+|++|+.+.. ..++..++. .++++|+||+++++ .|+||+
T Consensus 152 ~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~----~~~~~~~~~---di~~~s~sK~~~~~-~~~G~~ 220 (371)
T 2e7j_A 152 LITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM----PVSLKEIGA---DFIVGSGHKSMAAS-GPIGVM 220 (371)
T ss_dssp EEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB----CCCHHHHTC---SEEEEEHHHHSSCC-SSCEEE
T ss_pred EEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC----CCChhhcCC---CEEEecCCcCCCCC-CCcEEE
Confidence 99999999999987 58888999999999999999987432 122333333 38999999987655 499999
Q ss_pred EeeCCCCcccchhHHHH-HHhhhh---h-----ccCcchHHHHHHHHHHhhchHHHHHHHHHHH--HHHHHHHHHHhhcC
Q 014603 268 VTSDPNGILQDSGIVDS-IKSFLN---I-----SSDPATFIQGAVPQILEKTEEEFFSKITDIL--RETADICCDRLKEI 336 (422)
Q Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~~~---~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~ 336 (422)
++++ +++++ +..... . .++++...+.++..+++...+ +..+++ +++++.+.+.|+++
T Consensus 221 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~ 288 (371)
T 2e7j_A 221 GMKE--------EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL 288 (371)
T ss_dssp EECT--------TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT
T ss_pred EEec--------hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc
Confidence 9974 23333 332221 1 345566666666667764221 566677 88889999999887
Q ss_pred CCCCCCCCCC--CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC------CCeEE-EEec---cChHHH
Q 014603 337 PCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------KDWLR-ITFA---VEPSAL 404 (422)
Q Consensus 337 ~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~------~~~iR-is~~---~~~~~l 404 (422)
++.+. .|. .+.++|+.++ +..++...+ .++||.+.| ..+.. ++++| ++++ ++++++
T Consensus 289 -~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~l-~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i 356 (371)
T 2e7j_A 289 -GIKQL-GDNPHNHDLMFFHAE--------VLYEISKKA-KGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEV 356 (371)
T ss_dssp -TCEEE-SSSSCCSSEEEEECH--------HHHHHHHHS-SSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHH
T ss_pred -CcEEe-cCCCccCceEEEECC--------CHHHHHHHH-HHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHH
Confidence 77633 342 3568888875 245566655 477999988 33322 67899 9998 589999
Q ss_pred HHHHHHHHHHHHHh
Q 014603 405 EDGLGRMKAFYDRH 418 (422)
Q Consensus 405 ~~~~~~l~~~~~~~ 418 (422)
++++++|+++++++
T Consensus 357 ~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 357 DYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=265.80 Aligned_cols=336 Identities=15% Similarity=0.097 Sum_probs=238.1
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC---CCCC----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN---CYSS----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~---~y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
|.|+.+... ++++.+.+++.+.+.....+ .|.. .....++++.+++++ +++++++++|+|++
T Consensus 2 iyld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~~ 70 (382)
T 4hvk_A 2 AYFDYTSAK-----PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV------NGGGGTVVFTSGAT 70 (382)
T ss_dssp CBCBTTTCC-----CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHT------TCTTEEEEEESSHH
T ss_pred EeecCCCcC-----CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHc------CCCcCeEEEECCch
Confidence 455555433 66789999999988652111 1110 112336777777776 45678899999999
Q ss_pred HHHHHHHHHhc----CCCCEEEecCCCccchHHHHhh---CCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 121 QAIEVILTVLA----RPGANILLPRPGFPYYEARATH---SHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 121 ~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+++..+++++. ++||+|+++.++|+++...+.. .|.+++.++.+. ++.+|++.|++.++++++++++++|+
T Consensus 71 ~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~ 148 (382)
T 4hvk_A 71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHAN 148 (382)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhccCceEEEEECCC
Confidence 99999999987 8999999999999988665443 689999998763 45689999999999899999999999
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
||||.+++ +++|.++|+++|+ +|+|++|+. +....++...+. .+++.|+||+++++| +|++++++..
T Consensus 149 nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~----~~~~~~~~~~~~---d~~~~s~~K~~g~~g--~g~~~~~~~~ 215 (382)
T 4hvk_A 149 NEIGTIQP---VEEISEVLAGKAA-LHIDATASV----GQIEVDVEKIGA---DMLTISSNDIYGPKG--VGALWIRKEA 215 (382)
T ss_dssp TTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB----TTBCCCHHHHTC---SEEEEESGGGTSCTT--CEEEEEETTC
T ss_pred CCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc----CCCCCCchhcCC---CEEEEeHHHhcCCCc--eEEEEEcCcc
Confidence 99999976 6788889999999 999999875 221222222232 389999999876666 6777776432
Q ss_pred CcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC---ceE
Q 014603 274 GILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG---SMF 350 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~ 350 (422)
... +.+...........++++...+.++..+++. ...++++..++++++++.+.+.|+++|++.+. .+.. +.+
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~ 291 (382)
T 4hvk_A 216 KLQ--PVILGGGQENGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLN-GHPEKRLPNN 291 (382)
T ss_dssp CCC--CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEC-SCSSSBCTTE
T ss_pred CcC--cccccCCCcCccccCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe-CCccccCCCE
Confidence 110 0000000001112345566777777777763 24678889999999999999999998887733 3332 235
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHHHHH
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~~~~ 409 (422)
+++.++.. +..++...+ .++||.+.+|..|.. .+++|++++ +++++++++++
T Consensus 292 ~~~~~~~~------~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~ 364 (382)
T 4hvk_A 292 VNVRFSYI------EGESIVLSL-DMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp EEEEETTC------CHHHHHHHH-HHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCC------CHHHHHHHH-HHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 56666431 466666665 567999999976643 478999998 67899999999
Q ss_pred HHHHHHHHhcc
Q 014603 410 RMKAFYDRHAK 420 (422)
Q Consensus 410 ~l~~~~~~~~~ 420 (422)
+|+++++++.+
T Consensus 365 ~l~~~~~~~~~ 375 (382)
T 4hvk_A 365 VLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-33 Score=263.67 Aligned_cols=332 Identities=13% Similarity=0.095 Sum_probs=244.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCC--C----CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSAR--F----NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~--~----~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|..++||+.+++ .+++.+|.+.+++.+++.+.. . ..|+......+++++++++++ . +..+++
T Consensus 57 ~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~--~~~i~~ 125 (409)
T 3kki_A 57 ASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG------F--DECLLS 125 (409)
T ss_dssp CCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT------C--SEEEEE
T ss_pred CCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC------C--CeEEEe
Confidence 4677899988763 346678999999999987621 1 122333456789999999983 2 345666
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNP 195 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~np 195 (422)
++|++++..++.+++++||.|+++.|+|..+...+...|.+++.++. .|++.|++.+++ +++++++++|+||
T Consensus 126 ~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~np 198 (409)
T 3kki_A 126 QSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIYST 198 (409)
T ss_dssp SCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBCTT
T ss_pred cchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCC
Confidence 77789999999999999999999999999999889999988887653 488999998865 5789999999999
Q ss_pred cccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC-CCeEEEecCccccCCCCceeEEEEeeCCCC
Q 014603 196 CGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLGWLVTSDPNG 274 (422)
Q Consensus 196 tG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~ 274 (422)
||.+++ +++|.++|+++|++||+||+|+.+.++..........+.. +..+++.|+||+++++| ||+++++
T Consensus 199 tG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~~--- 269 (409)
T 3kki_A 199 LGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCNN--- 269 (409)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEESS---
T ss_pred CCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEECH---
Confidence 999987 8889999999999999999998744422111111112211 23488999999987665 9998863
Q ss_pred cccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEE
Q 014603 275 ILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFV 351 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 351 (422)
++++.+.... ......++..++++.++++... ..++.+++++++++++.+.|+++ ++. + +..+.++
T Consensus 270 -----~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~-~--~~~~~~~ 338 (409)
T 3kki_A 270 -----EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQL-GLT-I--RSESQII 338 (409)
T ss_dssp -----SGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTT-TCC-C--CCSSSEE
T ss_pred -----HHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCc-c--CCCCCEE
Confidence 3444444322 2233456677777777776532 22677888999999999999988 666 3 2467788
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
|+.++... +..++...+++ +||.+.++..+.. .+++|++++ ++++++++++++|+++++..
T Consensus 339 ~~~~~~~~-----~~~~~~~~L~~-~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 339 GLETGDER-----NTEKVRDYLES-NGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp EEEEESHH-----HHHHHHHHHHH-TTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCHH-----HHHHHHHHHHH-CCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 88876421 24456666655 5999988654422 479999997 68999999999999998763
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=266.44 Aligned_cols=319 Identities=15% Similarity=0.124 Sum_probs=240.5
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC--CCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP--DDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
.++++++.+++.+.+.... .+.......++++++++++ +.++ +++++|+|++++++ ++.+++++||+|+
T Consensus 11 ~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~la~~~------~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi 81 (384)
T 3zrp_A 11 TTIKEDVLVAGLENNVGFT--SKEFVEALAYSLKGLRYVM------GASKNYQPLIIPGGGTSAME-SVTSLLKPNDKIL 81 (384)
T ss_dssp SCCCHHHHHHTTCCSCCTT--SHHHHHHHHHHHHHHHHHH------TCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEE
T ss_pred CCCCHHHHHHhhccccccc--cHHHHHHHHHHHHHHHHHh------CCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEE
Confidence 3677899888877654311 1112334677888888888 3455 78999999999999 9999999999999
Q ss_pred ecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 139 LPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 139 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
+++++|++ +...++..|.+++.++.+. ++.+|++.+++.+++ +++++++++|+||||.+++ +++|.++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~ 156 (384)
T 3zrp_A 82 VVSNGVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKY 156 (384)
T ss_dssp EECSSHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGG
T ss_pred EecCCcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhc
Confidence 99999966 5566678899999998764 446899999999877 7899999999999999986 77889999999
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHH----------
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSI---------- 285 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~---------- 285 (422)
|+++|+|++|+... ....+...+ ..+++.|+||++++ +.++|+++++ +++++++
T Consensus 157 ~~~li~D~a~~~~~----~~~~~~~~~---~d~~~~s~~K~~~~-~~g~g~~~~~--------~~~~~~~~~~~~~~~~~ 220 (384)
T 3zrp_A 157 VELIVVDGVSSVGA----EEVKAEEWN---VDVYLTASQKALGS-AAGLGLLLLS--------PKALSILDSQNSIAGYY 220 (384)
T ss_dssp EEEEEEECTTTTTT----SCCCTTTTT---CSEEEEETTSTTCC-CSSEEEEEEC--------HHHHHHHHHCCCSCCST
T ss_pred CCEEEEECcccccC----ccccccccC---CCEEEecCcccccC-CCceEEEEEC--------HHHHHHhcCCCCCCccc
Confidence 99999999987522 122222222 34889999998642 2348999986 4565555
Q ss_pred ---Hhhhh-----------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----C
Q 014603 286 ---KSFLN-----------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----G 347 (422)
Q Consensus 286 ---~~~~~-----------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~ 347 (422)
..... ..++++...+.++..+++...+..+++..++++++++.+.+.|+++ ++.+. .+. .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~ 298 (384)
T 3zrp_A 221 LDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIV-ARRPESYS 298 (384)
T ss_dssp TCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-CSSGGGBC
T ss_pred ccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEc-cCcccccC
Confidence 11110 0135666677777777765444557889999999999999999998 77733 444 4
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+.++++.++.. +..++...+. ++||.+.+|..+.. +++|++++ ++++++++++++|+++++++.
T Consensus 299 ~~~~~~~~~~~------~~~~~~~~l~-~~gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 299 NTVTGVILKVA------DPQKVLAGTV-NEGVEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp SSEEEEECSSS------CHHHHHHHHH-TTTCCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEECCCC------CHHHHHHHHH-HCCEEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 66778888642 5677777765 45999999875443 89999987 789999999999999998764
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=262.99 Aligned_cols=315 Identities=16% Similarity=0.141 Sum_probs=229.2
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhh----CCCCCCCCCCCCCH---HHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVR----SARFNCYSSTVGIL---PARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~----~~~~~~y~~~~g~~---~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+++.++|. ++.++.+.+++.+.+. ......|++ .+.+ +++++++++++ . +++++++|++
T Consensus 21 ~~~~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g------~--~~~i~~~~g~ 87 (404)
T 1e5e_A 21 QFGAAIPPI----YQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEK------T--EACVATSSGM 87 (404)
T ss_dssp TTCCSSCCC----CCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHT------C--SEEEEESSHH
T ss_pred CCCCcCCCC----cCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhC------C--CcEEEeCChH
Confidence 467788866 4555555555444432 223346776 4556 89999999983 2 3788888889
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC 196 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt 196 (422)
+|+..++.+++++||+|+++.|+|+++.. .++..|.+++.++.+ |++.|++.++++++++++++|+|||
T Consensus 88 ~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~t~~v~l~~p~Npt 160 (404)
T 1e5e_A 88 GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKPNTKIVYFETPANPT 160 (404)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCTTEEEEEEESSCTTT
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCCCCcEEEEECCCCCC
Confidence 99999999999999999999999998877 677889999888753 7789999998899999999999999
Q ss_pred ccccCHHHHHHHHHHHHH-cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCC
Q 014603 197 GNVYTYQHLQKIAETAKK-LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNG 274 (422)
Q Consensus 197 G~~~~~~~l~~i~~~~~~-~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~ 274 (422)
|.+++ +++|+++|++ +|+++|+|++|+.+.+. .++ .+ +..+++.|+||+|+++|+|+ ||++++
T Consensus 161 G~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~----~~~-~~---~~di~~~S~sK~~~~~g~ri~G~~~~~---- 225 (404)
T 1e5e_A 161 LKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT----NPV-DF---GVDVVVHSATKYINGHTDVVAGLICGK---- 225 (404)
T ss_dssp CCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC----CGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEEC----
T ss_pred CcccC---HHHHHHHHHhhcCCEEEEECCCchhhhC----Ccc-cc---CCEEEEEcCccccCCCCCCeEEEEEEC----
Confidence 99985 8889999999 99999999999976542 122 22 34599999999999999998 999986
Q ss_pred cccchhHHH-HHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------
Q 014603 275 ILQDSGIVD-SIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC------------- 338 (422)
Q Consensus 275 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------------- 338 (422)
+++++ ++...... ....+++.++++..+++. +..+.++..++.+.+.+.|++.+.
T Consensus 226 ----~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p 296 (404)
T 1e5e_A 226 ----ADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHE 296 (404)
T ss_dssp ----HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSST
T ss_pred ----HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCc
Confidence 35666 67665543 345778888888888875 333444455556666666665432
Q ss_pred -CCCCCCC----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-------------------------
Q 014603 339 -ITCPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------------------------- 388 (422)
Q Consensus 339 -~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~------------------------- 388 (422)
+. +..+ .++++.| .++. ..+....++++.|| +.+|..|+
T Consensus 297 ~~~-~~~~~~~~~g~~~~~-~~~~--------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~ 365 (404)
T 1e5e_A 297 GHD-IAKKQMRMYGSMITF-ILKS--------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAA 365 (404)
T ss_dssp THH-HHHHHCSSCCSEEEE-EETT--------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHT
T ss_pred cHH-HHHhhCCCCceEEEE-EeCC--------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhc
Confidence 11 0011 1444444 7752 22345567788898 44554333
Q ss_pred -C-CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 389 -L-KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 389 -~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
. ++++|||++. +++++++++|+++++...
T Consensus 366 g~~~~~iRis~g~--e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 366 GITDGMIRLSVGI--EDADELIADFKQGLDALL 396 (404)
T ss_dssp TCCTTEEEEECCS--SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCC--CCHHHHHHHHHHHHHHHH
Confidence 1 5799999998 889999999998887653
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=263.41 Aligned_cols=318 Identities=16% Similarity=0.126 Sum_probs=236.5
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEec
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~ 140 (422)
.++++.+++++.+.+... ..|....+..++|+++++++ +++++++++|+|++++++.++.+++++||+|+++
T Consensus 10 ~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~------g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~ 81 (352)
T 1iug_A 10 VRLHPKALEALARPQLHH--RTEAAREVFLKARGLLREAF------RTEGEVLILTGSGTLAMEALVKNLFAPGERVLVP 81 (352)
T ss_dssp CCCCHHHHHHHHSCCCCT--TSHHHHHHHHHHHHHHHHHH------TCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCHHHHHHhccCCCCc--cCHHHHHHHHHHHHHHHHHh------CCCCceEEEcCchHHHHHHHHHhccCCCCeEEEE
Confidence 367799999998876431 11222245688999999998 4566899999999999999999999999999999
Q ss_pred CCCccchH--HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc--C
Q 014603 141 RPGFPYYE--ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL--G 216 (422)
Q Consensus 141 ~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~--~ 216 (422)
.|+|+++. ..++..|.+++.++.++ ++.+|++.+++ ++++++++++|+||||.+++ +++|.++|+++ |
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 153 (352)
T 1iug_A 82 VYGKFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPE 153 (352)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTT
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCC
Confidence 99998864 44556799999998754 34578888876 57889999999999999976 67889999999 9
Q ss_pred cEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH---------HH-
Q 014603 217 IMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS---------IK- 286 (422)
Q Consensus 217 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~---------~~- 286 (422)
+++|+|++|+. +.....+...+ ..++++|+||+++++ .++|++++++ +++++ +.
T Consensus 154 ~~li~D~a~~~----~~~~~~~~~~~---~d~~~~s~~K~~~~~-~g~G~~~~~~--------~~~~~~~~~~~~~~~~~ 217 (352)
T 1iug_A 154 GLVGADMVTSL----LVGEVALEAMG---VDAAASGSQKGLMCP-PGLGFVALSP--------RALERLKPRGYYLDLAR 217 (352)
T ss_dssp CEEEEECTTTB----TTBCCCSGGGT---CSEEEEESSSTTCCC-SCEEEEEECH--------HHHHTCCCCSSTTCHHH
T ss_pred CEEEEECCccc----cCcceeccccC---eeEEEecCcccccCC-CceeEEEECH--------HHHHHhhCCCceeeHHH
Confidence 99999999974 22112222222 248899999954332 2379999863 34332 11
Q ss_pred ---hh--hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CceEEEEecCcccc
Q 014603 287 ---SF--LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE-GSMFVMVKLNYSLL 360 (422)
Q Consensus 287 ---~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 360 (422)
.. ....++++...+.++.++++...+. +++.+++++++++.+.+.|+++ ++.+. .|. .+.++|+.++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~-- 292 (352)
T 1iug_A 218 ELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPV-PKRFSPAVAAFYLPEG-- 292 (352)
T ss_dssp HHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEES-CSSBCTTCEEEECCTT--
T ss_pred HHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCccc-ccccCCeEEEEEcCCC--
Confidence 11 1223466777777777777653323 7788899999999999999988 77633 453 567888888631
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+..++...+. ++||.+.+|..+...+++|++++ ++++++++++++|+++++++.
T Consensus 293 ---~~~~~~~~~l~-~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 293 ---VPYARVKEAFA-QRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp ---CCHHHHHHHHH-TTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHH-HCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 15667777765 55999999885545689999998 578999999999999988763
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=275.67 Aligned_cols=348 Identities=15% Similarity=0.125 Sum_probs=240.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
++..++||+.+......++ ++|.+.+++.+++..... ..|.+..+..++++++++++. + . .+++|++|+|++
T Consensus 39 ~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~ 112 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGS 112 (426)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHH
T ss_pred CCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchH
Confidence 5778899988764322233 678999999999865322 135556778899999999983 1 1 348999999999
Q ss_pred HHHHHHHH---HhcCCCCEEEecCCCccchHH-HHhhCCCe-------------EEEeeccC---CCCcccCHHHHHHhh
Q 014603 121 QAIEVILT---VLARPGANILLPRPGFPYYEA-RATHSHLE-------------VRHFDLLP---AKGWEVDLDAVEALA 180 (422)
Q Consensus 121 ~a~~~~~~---~l~~~gd~Vl~~~~~~~~~~~-~~~~~g~~-------------~~~~~~~~---~~~~~~d~~~l~~~~ 180 (422)
+|++.+++ .++++| +|++++|+|+++.. .....|.+ ++.++... ..++.+|++.|++.+
T Consensus 113 ~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l 191 (426)
T 1sff_A 113 EAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIF 191 (426)
T ss_dssp HHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHH
Confidence 99999988 677776 89999999987643 44444432 55566532 113446899999887
Q ss_pred c-----CCceEEEEe-CCCCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecC
Q 014603 181 D-----ENTVALVII-NPGNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSI 253 (422)
Q Consensus 181 ~-----~~~~~i~i~-~p~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 253 (422)
+ +++++++++ +++| || .++|.+++++|.++|++||++||+||+|+++.+.|... .+...+.. +.+.||
T Consensus 192 ~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~---~di~s~ 266 (426)
T 1sff_A 192 KNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVA---PDLTTF 266 (426)
T ss_dssp HHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTSC---CSEEEE
T ss_pred HhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh-hhhhcCCC---CCEEEE
Confidence 5 344555442 3367 99 78899999999999999999999999999876655321 22222221 224489
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
||++++ |+|+||++++ +++++.+.... ..+.+++++.+.++.++|+...+ .+..++++++++.+.+.
T Consensus 267 sK~~~~-GlriG~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~ 334 (426)
T 1sff_A 267 AKSIAG-GFPLAGVTGR--------AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDG 334 (426)
T ss_dssp CGGGGT-SSCCEEEEEE--------HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred cccccC-CCceEEEEEc--------HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence 999876 9999999997 35666554322 23346788899998888875322 23455666667777766
Q ss_pred hhc----CCCCCCCCCCCCceEEEEecCcccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHH
Q 014603 333 LKE----IPCITCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSA 403 (422)
Q Consensus 333 L~~----~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~ 403 (422)
|++ ++.+. ...+. |+++|+.++.... +...+..++...+. ++||.+.||..+ .+++|++++ +++++
T Consensus 335 l~~~~~~~~~~~-~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~--~~~iRi~~~~~~~~~~ 409 (426)
T 1sff_A 335 LLAIAEKHPEIG-DVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARAR-DKGLILLSCGPY--YNVLRILVPLTIEDAQ 409 (426)
T ss_dssp HHHHHHTCTTEE-EEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHH-HTTEECEEESTT--SCEEEECCCTTCCHHH
T ss_pred HHHHHHhCCCeE-EEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCcEEecCCCC--CCEEEEECCccCCHHH
Confidence 665 33222 11234 7889998842100 00012455666664 569999998754 689999986 78999
Q ss_pred HHHHHHHHHHHHHHhc
Q 014603 404 LEDGLGRMKAFYDRHA 419 (422)
Q Consensus 404 l~~~~~~l~~~~~~~~ 419 (422)
+++++++|++++++++
T Consensus 410 i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 410 IRQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998763
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=265.88 Aligned_cols=332 Identities=12% Similarity=0.039 Sum_probs=247.3
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCC-EEEecCHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSPDD-VYLTLGCT 120 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~-i~~~~g~~ 120 (422)
.+....|+-|. .++++.+.+++.+.... .|.+ .....+++++++++++ .+.++ +++++|++
T Consensus 11 ~~~~~~~~pgp------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~sgt 74 (411)
T 3nnk_A 11 PPSRLLMGPGP------INADPRVLRAMSSQLIG----QYDPAMTHYMNEVMALYRGVFR------TENRWTMLVDGTSR 74 (411)
T ss_dssp CCCCEEESSSC------CCCCHHHHHHHTSCCCC----TTCHHHHHHHHHHHHHHHHHHT------CCCSEEEEEESCHH
T ss_pred CccceeecCCC------CCCCHHHHHHhhccccc----cccHHHHHHHHHHHHHHHHHhC------CCCCcEEEECCCcH
Confidence 34445554443 36778998888765422 2222 1234677778888773 34444 78899999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCG 197 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG 197 (422)
++++.++.+++++||+|+++.|+|++ +...++..|.+++.++.+ .++.+|++.|++.+++ +++++++++|+||||
T Consensus 75 ~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG 152 (411)
T 3nnk_A 75 AGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP--WGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTT 152 (411)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcc
Confidence 99999999999999999999999987 888888899999999874 3456899999999876 899999999999999
Q ss_pred cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCccc
Q 014603 198 NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ 277 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~ 277 (422)
.+++ +++|.++|+++|+++|+|++++.. .....+...+ ..+++.|++|+++ .+.++|+++++
T Consensus 153 ~~~~---l~~i~~l~~~~~~~li~Dea~~~~----~~~~~~~~~~---~d~~~~s~~K~l~-~~~g~g~~~~~------- 214 (411)
T 3nnk_A 153 MLQP---LAELGEICRRYDALFYTDATASLG----GNPLETDVWG---LDAVSAGMQKCLG-GPSGTSPITLS------- 214 (411)
T ss_dssp EECC---CTTHHHHHHHHTCEEEEECTTTBT----TBCCCTTTTT---CSEEECCSTTTTC-CCSSEEEEEEC-------
T ss_pred eecc---HHHHHHHHHHcCCEEEEECCcccC----CcccchhccC---CcEEEecCccccC-CCCceEEEEEC-------
Confidence 9976 778899999999999999998752 2122222222 2488999999742 23358999986
Q ss_pred chhHHHHHHhhh-------------------------------------hhccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 278 DSGIVDSIKSFL-------------------------------------NISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 278 ~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
+++.+++.... ...++++...+.++..+++...+.++++..+
T Consensus 215 -~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~ 293 (411)
T 3nnk_A 215 -ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIA 293 (411)
T ss_dssp -HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46666665432 1123556777777777777544444788899
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCC---ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF 397 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 397 (422)
+++++++.+.+.|+++ ++.+. .+.+ +.++++.++.. .+..++...+++++||.+.+|.....++++||++
T Consensus 294 ~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~ 366 (411)
T 3nnk_A 294 RHKLHGDALVKGIQAM-GLETF-GDLKHKMNNVLGVVIPQG-----INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGT 366 (411)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBC-SCGGGBCSSEEEEECCTT-----CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHc-CCEeC-CCcccccccEEEEECCCC-----CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeC
Confidence 9999999999999987 77633 3432 56778887632 2567777777676799999986555578999998
Q ss_pred -c--cChHHHHHHHHHHHHHHHHhc
Q 014603 398 -A--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 398 -~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+ ++++++++++++|+++++++.
T Consensus 367 ~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 367 MGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred ccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 5 478999999999999998754
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=264.74 Aligned_cols=322 Identities=15% Similarity=0.076 Sum_probs=242.9
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANI 137 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~V 137 (422)
.++++.+.+++.++... .+.+ .....+++++++++++ .+. ++|++|+|+++++..++++++++||+|
T Consensus 32 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~gg~~al~~~~~~~~~~gd~v 101 (393)
T 3kgw_A 32 SNLAPRVLAAGSLRMIG----HMQKEMLQIMEEIKQGIQYVFQ------TRNPLTLVVSGSGHCAMETALFNLLEPGDSF 101 (393)
T ss_dssp CCCCHHHHHHTTCCCCC----TTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESCCTTTHHHHHHHHHCCTTCEE
T ss_pred CCCCHHHHHHhcccccC----cccHHHHHHHHHHHHHHHHHhC------CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEE
Confidence 36778998888765422 1221 2335677888888773 333 369999999999999999999999999
Q ss_pred EecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 138 LLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 138 l~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
+++.++|++ +...+...|.+++.++.+. ++.+|++.|++.+++ +++++++++|+||||.+++ +++|.++|++
T Consensus 102 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~ 176 (393)
T 3kgw_A 102 LTGTNGIWGMRAAEIADRIGARVHQMIKKP--GEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHR 176 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHH
T ss_pred EEEeCCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHH
Confidence 999988863 3667778899999998754 346899999999887 8999999999999999986 7788999999
Q ss_pred cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhhhh---
Q 014603 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN--- 290 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--- 290 (422)
+|+++|+|++|+.. .....+...+ ..+++.|+||++ +++| +|+++++ +++++.+.....
T Consensus 177 ~~~~li~De~~~~g----~~~~~~~~~~---~d~~~~s~sK~~~~~~g--~g~~~~~--------~~~~~~~~~~~~~~~ 239 (393)
T 3kgw_A 177 YQCLLLVDSVASLG----GVPIYMDQQG---IDIMYSSSQKVLNAPPG--ISLISFN--------DKAKYKVYSRKTKPV 239 (393)
T ss_dssp TTCEEEEECTTTTT----TSCCCTTTTT---CCEEEEESSSTTCCCSS--CEEEEEC--------HHHHHHHHTCSSCCS
T ss_pred cCCEEEEECCcccc----CcccchhhcC---CCEEEecCcccccCCCc--eeEEEEC--------HHHHHHHhccCCCCC
Confidence 99999999998742 1111222222 248888999975 3444 8999986 467777654221
Q ss_pred ---------------------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---
Q 014603 291 ---------------------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--- 346 (422)
Q Consensus 291 ---------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--- 346 (422)
..++++...+.++.++++...+.++++..++++++++.+.+.|+++ ++.+. .+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~ 317 (393)
T 3kgw_A 240 SFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFF-VKDPEI 317 (393)
T ss_dssp CSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SSSGGG
T ss_pred ceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeec-cCChhh
Confidence 1235677777777777775445567889999999999999999998 77633 232
Q ss_pred -CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c--cChHHHHHHHHHHHHHHHHhccc
Q 014603 347 -GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 347 -~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~--~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
.+.+.++.++.. .+..++...+++++||.+.+|..+..++++|+++ + ++++++++++++|+++++++.++
T Consensus 318 ~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 318 RLPTITTVTVPAG-----YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp BCSSEEEEECCTT-----BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred cCCeEEEEeCCCC-----CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 245667777532 1567777777666699999998776788999998 6 48999999999999999988664
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=266.73 Aligned_cols=327 Identities=12% Similarity=0.106 Sum_probs=242.1
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC---CCCC----CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF---NCYS----STVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
+.++|+.+.+. ++++.+.+++.+.+..... ..|. ......++|+++++++ ++++++|++|+|
T Consensus 26 ~~~~ld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~g 94 (406)
T 3cai_A 26 GWVHFDAPAGM-----LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV------NADPGGVVLGAD 94 (406)
T ss_dssp SCEECBGGGCC-----CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEEESC
T ss_pred CeEEEeCCCcC-----CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh------CCCCCeEEEeCC
Confidence 47888887744 5678999999998864211 1232 1245688999999998 456789999999
Q ss_pred HHHHHHHHHHHh---cCCCCEEEecCCCccchHHHHhh----CCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeC
Q 014603 119 CTQAIEVILTVL---ARPGANILLPRPGFPYYEARATH----SHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN 191 (422)
Q Consensus 119 ~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~ 191 (422)
+++++++++.++ +++||+|+++.|+|+++...+.. .|.+++.+++++ .++.+|++.|++.++++++++++++
T Consensus 95 ~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~~ 173 (406)
T 3cai_A 95 RAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI-ETGELPTWQWESLISKSTRLVAVNS 173 (406)
T ss_dssp HHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT-TTCCCCGGGHHHHCCTTEEEEEEES
T ss_pred hHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc-ccCCcCHHHHHHHhCCCceEEEEeC
Confidence 999999999987 78999999999999876544433 688999998763 3456899999999988899999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeE-EEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG-WLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G-~~~~~ 270 (422)
|+||||.+++ +++|.++|+++|+++|+|++|+. |....++..++ ..+++.|+||+++ ++ +| +++++
T Consensus 174 ~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~~---~d~~~~s~~K~~g-~~--~G~~~~~~ 240 (406)
T 3cai_A 174 ASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAA----PYRLLDIRETD---ADVVTVNAHAWGG-PP--IGAMVFRD 240 (406)
T ss_dssp BCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTT----TTCCCCHHHHC---CSEEEEEGGGGTS-CS--CEEEEESC
T ss_pred CcCCccccCC---HHHHHHHHHHcCCEEEEEccccc----CCCCCCchhcC---CCEEEeehhhhcC-CC--cCeEEEEe
Confidence 9999999976 67888999999999999999974 22222233333 3488999999864 44 89 99885
Q ss_pred CCCCcccchhHHHHHHhhhh----------hccCcchHHHHHHHHHHhhchH--------------HHHHHHHHHHHHHH
Q 014603 271 DPNGILQDSGIVDSIKSFLN----------ISSDPATFIQGAVPQILEKTEE--------------EFFSKITDILRETA 326 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~a~~~~l~~~~~--------------~~~~~~~~~~~~~~ 326 (422)
+++.+++..... ..++++...+.++.++++...+ .++++..+++++++
T Consensus 241 --------~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3cai_A 241 --------PSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVF 312 (406)
T ss_dssp --------HHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHH
Confidence 356655544321 1345566666666666654221 15788889999999
Q ss_pred HHHHHHhhcCCCCCCCCCCC--CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC------CCCC---CCeEEE
Q 014603 327 DICCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI------TVGL---KDWLRI 395 (422)
Q Consensus 327 ~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~------~~~~---~~~iRi 395 (422)
+.+.+.|++++++.+. .|. .+.++++.++.. +..++...+ .++||.+.+|. .++. .+++||
T Consensus 313 ~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~L-~~~gi~v~~g~~~~~~~~~g~~~~~~~iRi 384 (406)
T 3cai_A 313 DYLMVSLRSLPLVMLI-GRPEAQIPVVSFAVHKV------PADRVVQRL-ADNGILAIANTGSRVLDVLGVNDVGGAVTV 384 (406)
T ss_dssp HHHHHHHHTCTTEEEC-CCCSSBCSEEEEEETTB------CHHHHHHHH-HHTTEECEECCSCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHhcCCCeEEc-CCccccCCEEEEEECCc------CHHHHHHHH-HHCCcEEecCChHHHHHHcCCCCCCCeEEE
Confidence 9999999998887633 442 133677777531 466676666 56799999987 2332 478999
Q ss_pred Eec--cChHHHHHHHHHHHH
Q 014603 396 TFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 396 s~~--~~~~~l~~~~~~l~~ 413 (422)
+++ ++++++++++++|++
T Consensus 385 s~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 385 GLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp ECCTTCCHHHHHHHHHHHHT
T ss_pred EeecCCCHHHHHHHHHHHHH
Confidence 998 578999999998875
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=262.03 Aligned_cols=329 Identities=12% Similarity=0.117 Sum_probs=232.7
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
.+++|||+.+.+. +++|.+.+++.++... ....|++.....++++++++++ + .+.++++++|+++++
T Consensus 6 ~~~~id~~~~~~~-----~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~l~~~la~~~------g-~~~~v~~~~~gt~a~ 72 (356)
T 1v72_A 6 RPPALGFSSDNIA-----GASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIF------E-RDVEVFLVPTGTAAN 72 (356)
T ss_dssp CCCCCBCSCGGGC-----CCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHH------T-SCCEEEEESCHHHHH
T ss_pred CCceEeeccCCcc-----CCCHHHHHHHHhhccC-cccccccchHHHHHHHHHHHHh------C-CCCcEEEeCCccHHH
Confidence 4678999987533 5678999999988642 2345655444567777777776 2 244699999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHH--HhhC--CCeEEEeeccCCCCcccCHHHHHH-hhcC-------CceEEEEeC
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEAR--ATHS--HLEVRHFDLLPAKGWEVDLDAVEA-LADE-------NTVALVIIN 191 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~--~~~~--g~~~~~~~~~~~~~~~~d~~~l~~-~~~~-------~~~~i~i~~ 191 (422)
..++.+++++||+|+++.|+|...... +... |.+++.++.+ ++.+|++.|++ .+++ +++++++++
T Consensus 73 ~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~ 149 (356)
T 1v72_A 73 ALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQ 149 (356)
T ss_dssp HHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEc
Confidence 999999999999999999999765544 5555 8888888763 35789999999 8875 578889999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccc--cCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA--FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
|+| ||.++|.+++++|.++|++||+++|+|++|..+. +.+.....+ .+....+ +++.|+||+ +.+ ...||+++
T Consensus 150 ~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~~~~~d-~~~~s~sK~-g~~-~G~g~~~~ 224 (356)
T 1v72_A 150 ATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM-TWKAGVD-ALSFGATKN-GVL-AAEAIVLF 224 (356)
T ss_dssp SCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT-TGGGTCC-EEEECCGGG-TCS-SCEEEEES
T ss_pred CCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh-hhhhcCC-EEEEecccC-CCc-CccEEEEE
Confidence 886 9999999999999999999999999999997532 122221111 1111112 445699998 432 22347776
Q ss_pred eCCCCcccchhHHHHHHhhhhhccCc---chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 014603 270 SDPNGILQDSGIVDSIKSFLNISSDP---ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 346 (422)
+ +++++++.......+.. ....+.++...++. ..+.+..++++++++.+.+.|++++++.+. .|.
T Consensus 225 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~ 292 (356)
T 1v72_A 225 N--------TSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD---DLWLRNARKANAAAQRLAQGLEGLGGVEVL-GGT 292 (356)
T ss_dssp S--------GGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-SCC
T ss_pred C--------HHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhCCCcEEc-cCC
Confidence 4 45666665443221211 22222223334432 334456777888999999999988788733 567
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.++++|+.++ .++...+ .++||.+.||. |+ ++++|++++ ++++++++++++|++++++.
T Consensus 293 ~~~~~~~~~~----------~~~~~~l-~~~gi~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 293 EANILFCRLD----------SAMIDAL-LKAGFGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp CSSEEEEEEC----------HHHHHHH-HHTTCBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred CccEEEEEcC----------HHHHHHH-HhcCeEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 7888888774 2566666 56699999887 55 789999987 68999999999999887654
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=263.40 Aligned_cols=318 Identities=16% Similarity=0.077 Sum_probs=237.3
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCC-CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEe
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYS-STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILL 139 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~ 139 (422)
.++++.+.+++.+.+.. ..|+ ...+..++|++++++++. ..+++++++|+|+++|+..+++++++ |+|++
T Consensus 9 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~----~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~ 79 (353)
T 2yrr_A 9 TPIPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDP----GEGALVAALAGSGSLGMEAGLANLDR--GPVLV 79 (353)
T ss_dssp CCCCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCC----CTTCEEEEESSCHHHHHHHHHHTCSC--CCEEE
T ss_pred CCCCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCC----CCCCceEEEcCCcHHHHHHHHHHhcC--CcEEE
Confidence 46788999998887653 1222 124467889999998832 22467899999999999999999876 89999
Q ss_pred cCCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC
Q 014603 140 PRPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216 (422)
Q Consensus 140 ~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 216 (422)
++++|+++ ...++..|.+++.++.++ ++.+|++.|++.+++ +++++++++|+||||.+++ +++|.++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~ 154 (353)
T 2yrr_A 80 LVNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEAG 154 (353)
T ss_dssp EECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHHT
T ss_pred EcCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHcC
Confidence 99999874 455677899999998754 356899999998877 7899999999999999986 668889999999
Q ss_pred cEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHh--------
Q 014603 217 IMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKS-------- 287 (422)
Q Consensus 217 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-------- 287 (422)
+++|+|++|+.. ....++..++. .+++.|++|++ +++| +||++++ +++++++..
T Consensus 155 ~~li~D~a~~~~----~~~~~~~~~~~---d~~~~s~~K~~~~~~g--~G~~~~~--------~~~~~~l~~~~~~~~~~ 217 (353)
T 2yrr_A 155 ALFFLDAVTTLG----MLPFSMRAMGV---DYAFTGSQKCLSAPPG--LAPIAAS--------LEARKAFTGKRGWYLDL 217 (353)
T ss_dssp CEEEEECTTTTT----TSCCCHHHHTC---SEEECCTTSTTCCCSS--CEEEEEC--------HHHHHHCCCCSCSTTCH
T ss_pred CeEEEEcCcccc----cccccccccCc---eEEEecCcccccCCCc--eEEEEEC--------HHHHHHhccCCCccccH
Confidence 999999999642 21223333332 38888999964 4456 7999986 355555430
Q ss_pred --------hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CceEEEEecCc
Q 014603 288 --------FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GSMFVMVKLNY 357 (422)
Q Consensus 288 --------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~ 357 (422)
.....++++...+.++.++++...+.++++.+++++++++.+.+.|+++ ++.+. .+. .+.++++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~ 295 (353)
T 2yrr_A 218 ARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPY-PKASPLPTVLVVRPPE 295 (353)
T ss_dssp HHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEES-CSSSBCTTEEEEECCT
T ss_pred HHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccc-cCccCCCeEEEEECCC
Confidence 0112346677777777777765434447888899999999999999987 77633 343 45666787753
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHH-HHHHHHHHHHHH
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALE-DGLGRMKAFYDR 417 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~-~~~~~l~~~~~~ 417 (422)
. .+..++...+.+ +||.+.+|..|..++++|++++ .++++++ +++++|++++++
T Consensus 296 ~-----~~~~~~~~~l~~-~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 296 G-----VDADRLVRALYA-EGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp T-----CCHHHHHHHHHH-TTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred C-----CCHHHHHHHHHH-CCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 2 146677776654 5999999987766789999994 6788998 999999988753
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=264.39 Aligned_cols=322 Identities=15% Similarity=0.153 Sum_probs=237.4
Q ss_pred CCCCceeecCCCCCCCCCCC-CcHHHHHHHHHHhhCC--CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 43 DTRPLIPLGHGDPSAFPSFR-TASVAVDAIVHSVRSA--RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~-~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
++..++||+.+.+.. .+. +++.+.+++.+.+... ....|+ ..+..++++++++++ ++ ++++++++|+
T Consensus 26 ~g~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~l~~~la~~~------g~-~~~v~~~~g~ 95 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVN--SLGHAYPKLTEALKEQVEKLLHVSNLYE-NPWQEELAHKLVKHF------WT-EGKVFFANSG 95 (375)
T ss_dssp TCCEEEESSHHHHTC--TTCBSCHHHHHHHHHHHHHCSCCCTTBC-CHHHHHHHHHHHHTS------SS-CEEEEEESSH
T ss_pred CCCEEEEcCCccccc--ccCCCCHHHHHHHHHHHHhccccCcccC-CHHHHHHHHHHHhhc------CC-CCeEEEeCch
Confidence 577899999887541 244 7899999999987642 123563 356788999999887 33 4899999999
Q ss_pred HHHHHHHHHH---hc---CCC-CEEEecCCCccchHHHHhhCCCe-------------EEEeeccCCCCcccCHHHHHHh
Q 014603 120 TQAIEVILTV---LA---RPG-ANILLPRPGFPYYEARATHSHLE-------------VRHFDLLPAKGWEVDLDAVEAL 179 (422)
Q Consensus 120 ~~a~~~~~~~---l~---~~g-d~Vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~~ 179 (422)
+++++.++.+ +. ++| |+|++++|+|+++...+...+.. +..++. .|++.|++.
T Consensus 96 t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~ 168 (375)
T 2eh6_A 96 TESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKL 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHH
Confidence 9999999875 35 788 99999999998876655443321 222211 489999999
Q ss_pred hcCCceEEEEeCCCCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC
Q 014603 180 ADENTVALVIINPGNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI 258 (422)
Q Consensus 180 ~~~~~~~i~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~ 258 (422)
++++++++++++++||||.+ .+.+++++|.++|+++|+++|+||+|+++.+.+.. .++..++...+++ |+||.++
T Consensus 169 l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~d~~---s~SK~~~ 244 (375)
T 2eh6_A 169 LDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF-YAYQHFNLKPDVI---ALAKGLG 244 (375)
T ss_dssp CCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGTCCCSEE---EECGGGG
T ss_pred hcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc-hhhhhcCCCCCEE---EEccccc
Confidence 88888999998899999998 56888999999999999999999999976544422 1333333222333 7789987
Q ss_pred CCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 259 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
+|+|+||++++ +++++.+.... ..+.+.+++.+.++.++|+.. .+..++++++++.+.+.|++++
T Consensus 245 -~g~~~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~ 310 (375)
T 2eh6_A 245 -GGVPIGAILAR--------EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-----EKLLPHVREVGNYFKEKLKELG 310 (375)
T ss_dssp -TTSCCEEEEEE--------HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCeEEEEEc--------HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999986 35555554421 223355778888887777652 2677888889999999998874
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
. . . .+..|.++|+.++. +..++...+. ++||.+.|+. .+++|++++ ++++++++++++|+++
T Consensus 311 ~-~-~-~~~~g~~~~~~~~~-------~~~~~~~~l~-~~gi~~~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 311 K-G-K-VKGRGLMLGLELER-------ECKDYVLKAL-EKGLLINCTA----GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp S-S-E-EEEETTEEEEECSS-------CCHHHHHHHH-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred c-C-C-ceEEEEEEEEEEcC-------cHHHHHHHHH-HCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3 2 2 34557888988863 3456666664 5799999863 578999986 6899999999999875
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=259.37 Aligned_cols=318 Identities=14% Similarity=0.039 Sum_probs=232.5
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCC--------
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP-------- 133 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~-------- 133 (422)
+++|.+.+++.+++..... .+....+..++++.+++++.+.+ +.++++|++|+|+++|+..++.++..+
T Consensus 41 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~--~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~ 117 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLG-DPGLFKGTKLLEEKAVALLGSLL--NNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKG 117 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTT-SGGGBHHHHHHHHHHHHHHHHHT--TCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhcCC-CcccChhHHHHHHHHHHHHHHHh--CCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 5567899999998865321 22222233455555555555544 356789999999999999999998765
Q ss_pred -----CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHH
Q 014603 134 -----GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQK 207 (422)
Q Consensus 134 -----gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~ 207 (422)
||+|+++.|+|+++...++..|.+++.++.++ ++.+|++.|++.+++ +++++++++|+||||.+.+ +++
T Consensus 118 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~ 192 (397)
T 3f9t_A 118 LSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IEE 192 (397)
T ss_dssp CCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HHH
T ss_pred ccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HHH
Confidence 89999999999999999999999999998754 467899999999987 8999999999999999964 788
Q ss_pred HHHHHHHcCcEEEEcccccccccC--CC--------CCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCccc
Q 014603 208 IAETAKKLGIMVIADEVYDHLAFG--NT--------PFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ 277 (422)
Q Consensus 208 i~~~~~~~~~~li~D~~~~~~~~~--~~--------~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~ 277 (422)
|.++|+++|+++|+|++|+.+.+. +. ....+.. ...+++.|++|+ +++|.|+|+++++++
T Consensus 193 i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~K~-~~~~~~~g~~~~~~~----- 262 (397)
T 3f9t_A 193 LSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL----GVDSITIDPHKM-GHCPIPSGGILFKDI----- 262 (397)
T ss_dssp HHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG----TCSEEECCTTTT-TCCCSSCEEEEESSG-----
T ss_pred HHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc----cCCeEEEccccc-cCCCCCceEEEEeCH-----
Confidence 899999999999999999865432 11 0111111 234888999998 567779999998652
Q ss_pred chhHHHHHHhhhhhc---------cC---cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 278 DSGIVDSIKSFLNIS---------SD---PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~---------~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
.+.+.+....... ++ .+...+.++...+. ...+++..++++++++.+.+.|+++ ++.++ .+
T Consensus 263 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~ 335 (397)
T 3f9t_A 263 --GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG---REGQRKIVNECMENTLYLYKKLKEN-NFKPV-IE 335 (397)
T ss_dssp --GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SC
T ss_pred --HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE-cC
Confidence 2333332111110 11 23344555544443 4667888888999999999999998 77644 44
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
..+.++++.++ +..++...+ .++||.+.++.. ++++||+++ ++++++++++++|+++++
T Consensus 336 ~~~~~~~~~~~--------~~~~~~~~l-~~~gi~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDE--------DYKEVCKKL-RDRGIYVSVCNC---VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECT--------THHHHHHHH-HHTTCBCEECSS---SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeC--------CHHHHHHHH-HhCCeEEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 45667777765 345666666 455999999764 589999998 689999999999998764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=261.48 Aligned_cols=331 Identities=13% Similarity=0.059 Sum_probs=241.6
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEE-EecCHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVY-LTLGCTQ 121 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~-~~~g~~~ 121 (422)
+..+.|+-+. .+.++.+.+++.+.. ...|.+ .....++++++++++ +.+++.++ +++|+++
T Consensus 10 ~~~~~~~p~p------~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~------g~~~~~~~~~~~s~t~ 73 (416)
T 3isl_A 10 PLRTIMTPGP------VEVDPRVLRVMSTPV----VGQFDPAFTGIMNETMEMLRELF------QTKNRWAYPIDGTSRA 73 (416)
T ss_dssp CCCEECSSSS------CCCCHHHHHHTTSCC----CCTTSHHHHHHHHHHHHHHHHHT------TCCCSEEEEEESCHHH
T ss_pred ccceeecCCC------cCcCHHHHHHhcccC----CCCccHHHHHHHHHHHHHHHHHh------CCCCCcEEEecCcHHH
Confidence 3445555443 345677777665522 223332 223556677777776 34566565 8899999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc-CCceEEEEeCCCCCccc
Q 014603 122 AIEVILTVLARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD-ENTVALVIINPGNPCGN 198 (422)
Q Consensus 122 a~~~~~~~l~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~ 198 (422)
++..++.+++++||+|+++.|+|++ +...++..|.+++.++.+. ++.+|++.|++.++ ++++++++++|+||||.
T Consensus 74 al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~ 151 (416)
T 3isl_A 74 GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEW--GTVFDPEDIIREIKKVKPKIVAMVHGETSTGR 151 (416)
T ss_dssp HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred HHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCC--CCCCCHHHHHHHHhhCCCcEEEEEccCCCCce
Confidence 9999999999999999999999987 7778888999999999764 34689999999987 58899999999999999
Q ss_pred ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 199 ~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
+++ +++|.++|+++|+++|+|++|+... ...++...+. .+++.|++|+++ .+.++|+++++
T Consensus 152 ~~~---l~~i~~l~~~~~~~li~D~a~~~~~----~~~~~~~~~~---d~~~~s~~K~l~-g~~g~g~~~~~-------- 212 (416)
T 3isl_A 152 IHP---LKAIGEACRTEDALFIVDAVATIGG----CEVKVDEWKI---DAAIGGTQKCLS-VPSGMAPITYN-------- 212 (416)
T ss_dssp ECC---CHHHHHHHHHTTCEEEEECTTTTTT----SCCCTTTTTC---SEEECCSSSTTC-CCSSEEEEEEC--------
T ss_pred ecC---HHHHHHHHHHcCCEEEEECCccccC----CCcchhhcCC---CEEEecCccccC-CCCCeEEEEEC--------
Confidence 976 7888999999999999999987522 1222222332 388999999732 23348999886
Q ss_pred hhHHHHHHhhh---------------------------------------hhccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 279 SGIVDSIKSFL---------------------------------------NISSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 279 ~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
+++++++.... ...++++...+.++.++++...+..+++..
T Consensus 213 ~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~ 292 (416)
T 3isl_A 213 ERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRF 292 (416)
T ss_dssp HHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45666665321 112356677777777777754333478899
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCC---ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEE
Q 014603 320 DILRETADICCDRLKEIPCITCPKKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT 396 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis 396 (422)
++++++++.+.+.|++. ++.+. .+.+ +.++++.++.. .+..++...+.+++||.+.+|.....++++||+
T Consensus 293 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~ 365 (416)
T 3isl_A 293 ERHRHHEAALAAGIKAM-GLRLF-GDDSCKMPVVTCVEIPGG-----IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIG 365 (416)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCBC-SCGGGBCTTEEEEECCTT-----CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHc-CCEec-cCccccCCcEEEEeCCCC-----CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEe
Confidence 99999999999999996 77733 4433 56777777532 256778777766669999998765557899999
Q ss_pred ec--cChHH-HHHHHHHHHHHHHHhc
Q 014603 397 FA--VEPSA-LEDGLGRMKAFYDRHA 419 (422)
Q Consensus 397 ~~--~~~~~-l~~~~~~l~~~~~~~~ 419 (422)
++ .++++ +++++++|+++++++.
T Consensus 366 ~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 366 TMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 94 44555 9999999999998763
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=267.22 Aligned_cols=336 Identities=17% Similarity=0.203 Sum_probs=239.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+++.++||+.+.+....++ .+|.+.+++.+++..... ..|+ .....++++++++++ ..+++++|+|++
T Consensus 37 ~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~--------~~~~v~~~~gg~ 106 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTGNGYT-NEPVLRLAKKLIDAT--------FADRVFFCNSGA 106 (406)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTTSC-CHHHHHHHHHHHHHS--------SCSEEEEESSHH
T ss_pred CCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhcccccCCcC-CHHHHHHHHHHHhhC--------CCCeEEEeCcHH
Confidence 5778899998844322333 578999999998875321 1232 223456666666665 345999999999
Q ss_pred HHHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCCcccCHHHHHHh
Q 014603 121 QAIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKGWEVDLDAVEAL 179 (422)
Q Consensus 121 ~a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d~~~l~~~ 179 (422)
+|++.++++++. +| |+|++++|+|+++...+...+. ++..++. .|++.|++.
T Consensus 107 ~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~ 179 (406)
T 4adb_A 107 EANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASAL 179 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHH
Confidence 999999998864 56 9999999999988555544433 2222221 378999999
Q ss_pred hcCCceEEEEeCCCCCccccc--CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc
Q 014603 180 ADENTVALVIINPGNPCGNVY--TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW 257 (422)
Q Consensus 180 ~~~~~~~i~i~~p~nptG~~~--~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~ 257 (422)
+++++++++++ |+||+|.++ +.+++++|.++|++||+++|+||+|+++.+.|... .+...+...+++ |+||.+
T Consensus 180 l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~~---t~sK~~ 254 (406)
T 4adb_A 180 IDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPDLL---TTAKAL 254 (406)
T ss_dssp CSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---EECGGG
T ss_pred hcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-HHHhcCCCCCEE---Eechhh
Confidence 98888888777 999999987 99999999999999999999999999876665432 222333333333 569998
Q ss_pred CCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 258 IVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 258 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
+ +|+|+||++++ +++++.+.... ..+.+++++.+.++.++|+.... ++..++++++++.+.+.|+++
T Consensus 255 ~-~G~r~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~ 322 (406)
T 4adb_A 255 G-GGFPVGALLAT--------EECARVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTI 322 (406)
T ss_dssp G-TTSCCEEEEEC--------HHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEEc--------HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 7 89999999986 46777666543 23457788999999888875321 456677777778887777764
Q ss_pred CC-CCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHH
Q 014603 337 PC-ITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 337 ~~-~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
.. ...+ ..+..+.++++.++... ..+..++...+. ++||.+.|+. .+++|++++ ++++++++++++|+
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~-~~gi~v~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~ 394 (406)
T 4adb_A 323 NHRYGLFSEVRGLGLLIGCVLNADY---AGQAKQISQEAA-KAGVMVLIAG----GNVVRFAPALNVSEEEVTTGLDRFA 394 (406)
T ss_dssp HHHHCCEEEEEEETTEEEEEECTTT---TTCHHHHHHHHH-HTTEECEESS----TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHhCCCceEEEEEEEEEEEEEeCCc---HHHHHHHHHHHH-HCCcEEeecC----CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 11 1101 12234678888886421 013566777665 4599999864 689999765 78999999999999
Q ss_pred HHHHHhcc
Q 014603 413 AFYDRHAK 420 (422)
Q Consensus 413 ~~~~~~~~ 420 (422)
++++++.+
T Consensus 395 ~~l~~~~~ 402 (406)
T 4adb_A 395 AACEHFVS 402 (406)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99988754
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=259.50 Aligned_cols=330 Identities=13% Similarity=0.120 Sum_probs=241.3
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC-C-CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS-T-VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
.+++|+.| |. +.++++.+++.+++. ..|+. . .+..++|++++++++. +.+++++++|+|+++|+
T Consensus 4 ~~~~~~~g-p~-----~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~----~~~~~~v~~~~g~t~a~ 69 (366)
T 1m32_A 4 NYLLLTPG-PL-----TTSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALATA----SEGYTSVLLQGSGSYAV 69 (366)
T ss_dssp -CEECSSS-SC-----CCCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHCS----SSSEEEEEEESCHHHHH
T ss_pred ccccccCC-Cc-----CCCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhCC----CCcCcEEEEecChHHHH
Confidence 36889888 32 567899998877531 12221 1 6789999999999941 22335799999999999
Q ss_pred HHHHHHhcCCCCEEEecC-CCccc-hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC--CceEEEEeCCCCCcccc
Q 014603 124 EVILTVLARPGANILLPR-PGFPY-YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--NTVALVIINPGNPCGNV 199 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~-~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~i~~p~nptG~~ 199 (422)
+.++++++++||+|++.+ ++|.. +...+...|.+++.++.+. ++.+|++.|++.+++ +++++++++|+||||.+
T Consensus 70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~ 147 (366)
T 1m32_A 70 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGML 147 (366)
T ss_dssp HHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEE
T ss_pred HHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCccee
Confidence 999999999999988776 55543 5566777899999888753 456899999998865 47888899999999999
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccch
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
++ +++|.++|+++|+++|+|++|+.... ...+...+ ..+++.|+||++++ +.++||+++++
T Consensus 148 ~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~~~~~~~~---~di~~~s~~K~~~~-~~g~G~~~~~~-------- 208 (366)
T 1m32_A 148 NP---IDEVGALAHRYGKTYIVDAMSSFGGI----PMDIAALH---IDYLISSANKCIQG-VPGFAFVIARE-------- 208 (366)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTS----CCCTTTTT---CSEEEEESSSTTCC-CSSEEEEEEEH--------
T ss_pred cC---HHHHHHHHHHcCCEEEEECCccccCc----CccccccC---ccEEEecCcccccC-CCceEEEEECH--------
Confidence 87 77889999999999999999985321 12222222 34889999997533 23479999873
Q ss_pred hHHHHHHhhh------------------h-hccCcchHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHhhcCCCC
Q 014603 280 GIVDSIKSFL------------------N-ISSDPATFIQGAVPQILEKTEEEF-FSKITDILRETADICCDRLKEIPCI 339 (422)
Q Consensus 280 ~~~~~~~~~~------------------~-~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~ 339 (422)
++++++.... . ..++++...+.++.++++...+.. +++.+++++++++.+.+.|+++ ++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~ 287 (366)
T 1m32_A 209 QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GF 287 (366)
T ss_dssp HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CC
Confidence 4444332210 0 023667777878888887543322 6788899999999999999988 77
Q ss_pred CCCCCC---CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 340 TCPKKP---EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 340 ~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
.+. .+ ..+.++|+.++.. .+ .+..++...+. ++||.+.+|..| ..+++|++++ ++++++++++++|+++
T Consensus 288 ~~~-~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~-~~gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 361 (366)
T 1m32_A 288 NTL-LDDELHSPIITAFYSPED--PQ-YRFSEFYRRLK-EQGFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTA 361 (366)
T ss_dssp CBS-SCGGGBCSSEEEEECCCC--TT-CCHHHHHHHHH-HTTEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred eec-cCchhcCceEEEEEcCcc--CC-CCHHHHHHHHH-HCCEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 633 33 3566888888630 00 24667777765 459999998876 3689999998 5789999999999988
Q ss_pred HHH
Q 014603 415 YDR 417 (422)
Q Consensus 415 ~~~ 417 (422)
+++
T Consensus 362 ~~~ 364 (366)
T 1m32_A 362 MYW 364 (366)
T ss_dssp CTT
T ss_pred HHh
Confidence 754
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=263.17 Aligned_cols=339 Identities=14% Similarity=0.138 Sum_probs=228.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++..++||+.+.+....++..+|.+.+++.+++.... .|++..+..+.+..+++.+.+.+|... +++|++|+|+++|
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea 116 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA--HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEA 116 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC--CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc--cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHH
Confidence 5677899988875422222227999999999986532 222111222334444444444343222 7899999999999
Q ss_pred HHHHHHHhcC-CCCEEEecCCCccchHHHHh-hC-------------CCeEEEeeccCCC--Ccc------------cCH
Q 014603 123 IEVILTVLAR-PGANILLPRPGFPYYEARAT-HS-------------HLEVRHFDLLPAK--GWE------------VDL 173 (422)
Q Consensus 123 ~~~~~~~l~~-~gd~Vl~~~~~~~~~~~~~~-~~-------------g~~~~~~~~~~~~--~~~------------~d~ 173 (422)
++.+++++.. +||+|++++|+|+++...+. .. ..+++.++.+... +++ +|+
T Consensus 117 ~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 196 (419)
T 2eo5_A 117 IEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVI 196 (419)
T ss_dssp HHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHH
Confidence 9999987643 38999999999987544322 11 1245666653210 112 367
Q ss_pred HHHH-HhhcC----CceEEEEeCCC-CCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC
Q 014603 174 DAVE-ALADE----NTVALVIINPG-NPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246 (422)
Q Consensus 174 ~~l~-~~~~~----~~~~i~i~~p~-nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (422)
+.|+ +.+++ +..++++++|+ ||||. .++.+++++|.++|++||+++|+||+|.++.+.|.. ..+...+..++
T Consensus 197 ~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~-~~~~~~~~~~d 275 (419)
T 2eo5_A 197 EFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKL-FAIENFNTVPD 275 (419)
T ss_dssp HHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGGTCCCS
T ss_pred HHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcch-hhHHhcCCCCC
Confidence 8898 87763 34456678885 57896 678888999999999999999999999987665542 12222232233
Q ss_pred eEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 247 VLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
+ .|+||.|++ | +|+||+++++ +++ .+......+.+.++++++++.++|+.. ++..++++++
T Consensus 276 ~---~t~sK~~~~-G~~riG~~~~~~--------~~~-~~~~~~~~t~~~n~~~~~aa~aal~~~-----~~~~~~~~~~ 337 (419)
T 2eo5_A 276 V---ITLAKALGG-GIMPIGATIFRK--------DLD-FKPGMHSNTFGGNALACAIGSKVIDIV-----KDLLPHVNEI 337 (419)
T ss_dssp E---EEECGGGGT-TTSCCEEEEEEG--------GGC-CC------CCCCCHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred E---EEecccccC-CccceEEEEEch--------Hhh-cCCcccCCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3 378999874 9 9999999874 344 341122334567889999999999752 2277888899
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCceEEEEecC-cccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChH
Q 014603 326 ADICCDRLKEIPCITCPKKPEGSMFVMVKLN-YSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPS 402 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~ 402 (422)
++.+.+.|+++ +. . .+..|.++++.+. ... ... +...++ ++||.+.|+. .+++||+++ ++++
T Consensus 338 ~~~l~~~L~~~--~~-~-~~~~g~~~~i~~~~~~~-----~~~-~~~~l~-~~Gv~v~~~~----~~~lRis~~~~~t~e 402 (419)
T 2eo5_A 338 GKIFAEELQGL--AD-D-VRGIGLAWGLEYNEKKV-----RDR-IIGESF-KRGLLLLPAG----RSAIRVIPPLVISEE 402 (419)
T ss_dssp HHHHHHHHTTS--SS-E-EEEETTEEEEECSCHHH-----HHH-HHHHHH-HTTEECEEET----TTEEEECCCTTCCHH
T ss_pred HHHHHHHHHHh--hh-h-eEeeeEEEEEEEecCcc-----HHH-HHHHHH-HCCCEEecCC----CCEEEEECCCCCCHH
Confidence 99999999876 32 2 2344778888883 210 133 555554 6799999864 578999876 7899
Q ss_pred HHHHHHHHHHHHHHHh
Q 014603 403 ALEDGLGRMKAFYDRH 418 (422)
Q Consensus 403 ~l~~~~~~l~~~~~~~ 418 (422)
++++++++|+++++++
T Consensus 403 ~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 403 EAKQGLDILKKVIKVV 418 (419)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=257.59 Aligned_cols=333 Identities=13% Similarity=0.086 Sum_probs=234.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+.+.+|+|+++.+. ++++.+.+++.+++.. |....+..++++.+++++.+.+| .++++|++|+|++++
T Consensus 11 ~~p~~i~l~~~~~~-----~~~~~v~~a~~~~~~~-----~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a 78 (359)
T 1svv_A 11 AKPKPYSFVNDYSV-----GMHPKILDLMARDNMT-----QHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQT 78 (359)
T ss_dssp ----CEECSCSCSS-----CCCHHHHHHHHHHTTC-----CCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHH
T ss_pred CCCeeEEecCCCcC-----CCCHHHHHHHHHHHhh-----ccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHH
Confidence 34668999986533 5778999999998753 55545666777777777776554 567899999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHH--HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC-------ceEEEEeCCC
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEA--RATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN-------TVALVIINPG 193 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~-------~~~i~i~~p~ 193 (422)
++.++++++++||+|++++|+|+++.. .++..|.+++.++.+ ++.+|++.|++.++++ ++++++++|
T Consensus 79 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~- 154 (359)
T 1svv_A 79 NLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT- 154 (359)
T ss_dssp HHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-
T ss_pred HHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-
Confidence 999999999999999999999998876 477889999988863 5679999999988665 788999998
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
||||.++|.+++++|.++|+++|+++|+||+|..+.+.... .....+.. ....++..|++|. +.+ .++|++++++
T Consensus 155 ~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~d~~~~s~~K~-g~~-~~~g~l~~~~- 230 (359)
T 1svv_A 155 TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPV-NDLTLADIARLTDMFYIGATKA-GGM-FGEALIILND- 230 (359)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT-CCCCHHHHHHHCSEEEEECTTT-TCS-SCEEEEECSG-
T ss_pred CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC-cchhhhhhhhcCCEEEEecccC-CCC-CceEEEEEcc-
Confidence 79999999999999999999999999999999543221111 11111100 0112677889997 443 4578888752
Q ss_pred CCcccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce
Q 014603 273 NGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM 349 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 349 (422)
++++.+.... ......+.....++.++++. ..+++..++++++++.+.+.| +.+++. +..|.+++
T Consensus 231 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L-~~~~~~-~~~~~~~~ 298 (359)
T 1svv_A 231 -------ALKPNARHLIKQRGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGL-EACGIR-LAWPSASN 298 (359)
T ss_dssp -------GGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHH-HHTTCC-BSSCCSSS
T ss_pred -------cHHHHHHHHHhcCCcccccchhhHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHh-ccCCeE-EccCCccc
Confidence 4444444332 11111122222333345543 345778888999999999999 556887 44677788
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
++|+.++ .++...+++++||.+.+.. ....+++|++++ ++++++++++++|++++++.
T Consensus 299 ~~~~~~~----------~~~~~~l~~~~gi~v~~~~-~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 299 QLFPILE----------NTMIAELNNDFDMYTVEPL-KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp EECBEEE----------HHHHHHHTTTEECEEEEEE-TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred eEEEEcC----------HHHHHHHHHhcCEEEEecc-cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 8887663 3566666555599983311 123578999986 68999999999999887653
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=264.46 Aligned_cols=356 Identities=12% Similarity=0.090 Sum_probs=226.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+++.++||..+.+....+ ..+|.+.+++.+++... ..|.+..+..+.++.+++++.+.++ .+.++|++|+|+++|
T Consensus 27 ~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea 101 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIG-HGRAEVGERMAAQAARL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEA 101 (430)
T ss_dssp TSCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHHHC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHH
T ss_pred CCCEEEECCCchhccccC-CCCHHHHHHHHHHHHhc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHH
Confidence 578899999875442222 23899999999988763 2343334445666666666665543 566799999999999
Q ss_pred HHHHHHHhc--------CCCCEEEecCCCccchHHHHhhCCCe---------------EEEeeccCC-CCcccCHHHHHH
Q 014603 123 IEVILTVLA--------RPGANILLPRPGFPYYEARATHSHLE---------------VRHFDLLPA-KGWEVDLDAVEA 178 (422)
Q Consensus 123 ~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~---------------~~~~~~~~~-~~~~~d~~~l~~ 178 (422)
++.++++++ .+++.|++.+|+|+++...+...+.. +..++.... .....|++.|++
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 181 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA 181 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence 999999876 34689999999999876555443321 112221100 001235588888
Q ss_pred hhcC---CceEEEEeCC-CC-Cccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEe
Q 014603 179 LADE---NTVALVIINP-GN-PCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLG 251 (422)
Q Consensus 179 ~~~~---~~~~i~i~~p-~n-ptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~ 251 (422)
.+++ +..++++++| +| ++|. .++.+++++|.++|++||+++|+||+|.++.++|.. ..+..+ +..++ +.
T Consensus 182 ~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~-~~~~~~~~~~~d---i~ 257 (430)
T 3i4j_A 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP-LALSRWSGVTPD---IA 257 (430)
T ss_dssp HHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SGGGGTTTCCCS---EE
T ss_pred HHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch-hhhhhhcCCCCc---EE
Confidence 7762 4566667777 55 7886 678888999999999999999999999988766642 223333 32223 33
Q ss_pred cCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh-----hhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHH
Q 014603 252 SISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF-----LNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRE 324 (422)
Q Consensus 252 s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~ 324 (422)
++||+++ +| +|+||++++ +++++.+... ...+.+.++++++++.++|+... +...++.++..+.
T Consensus 258 t~sK~l~-~G~~r~G~~~~~--------~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 258 VLGKGLA-AGYAPLAGLLAA--------PQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ 328 (430)
T ss_dssp EECGGGT-TTSSCCEEEEEC--------HHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EEccccc-CCccccEEEEEC--------HHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5789986 49 999999986 5788888763 23445778899999999987533 2334444444555
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC----CCCHHHHHHHHHHhcCeEEecCCCCC---CCCeEEEEe
Q 014603 325 TADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG----INSDMEFALKLAKEESVIVLPGITVG---LKDWLRITF 397 (422)
Q Consensus 325 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~ 397 (422)
.++.+.+.++++|.+. . .+..|.++++.+....... .....++...+ .++||.+.|+..+. ..+++||++
T Consensus 329 ~~~~l~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~~~~~~iRi~~ 405 (430)
T 3i4j_A 329 LLAGLQALQARFPQMM-Q-VRGTGLLLGVVLGDLATGQAFETPGIASRIGAAA-LKRGLITYPGSGAEPNGRGDHLLLGP 405 (430)
T ss_dssp HHHHHHHHHHHCTTEE-E-EEEETTEEEEEEC------------CHHHHHHHH-HHTTEECC-----------CEEEECC
T ss_pred HHHHHHHHHHhCCCeE-E-EEEEEEEEEEEeccccccCCCccHHHHHHHHHHH-HhCCCEEEecccccCCCCCCEEEEEC
Confidence 5555555555566554 2 2334668887775211000 01234566665 46799999974321 157899999
Q ss_pred c--cChHHHHHHHHHHHHHHHHhc
Q 014603 398 A--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 398 ~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+ .+++++++++++|+++++++.
T Consensus 406 ~~~~t~e~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 406 PLSITAAEVDGLLALLAGALEDVL 429 (430)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 8 789999999999999998753
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=255.02 Aligned_cols=328 Identities=14% Similarity=0.113 Sum_probs=230.4
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
...+|+-|. .++++++.+++.+++.. .+.+. ....++++.+++++ |.+.+.+.+++++|+++++
T Consensus 19 ~~~~~~pgp------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~----g~~~~~~~i~~~~ggt~al 84 (376)
T 3f0h_A 19 GMLNFTVGP------VMSSEEVRAIGAEQVPY----FRTTEFSSTMLENEKFMLEYA----KAPEGSKAVFMTCSSTGSM 84 (376)
T ss_dssp SCEECSSSS------CCCCHHHHHHHTSCCCC----CSSHHHHHHHHHHHHHHHHHH----TCCTTCEEEEESSCHHHHH
T ss_pred CceeecCCC------CCCcHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCChhHHH
Confidence 345665554 46788999988776532 22221 12344555555555 3232224455699999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchH--HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccC
Q 014603 124 EVILTVLARPGANILLPRPGFPYYE--ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~ 201 (422)
+.++++++++||+|++++|.|++.. ..+...|.+++.++.+ .++.+|++.+++.++++++++++++|+||||.++|
T Consensus 85 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~ 162 (376)
T 3f0h_A 85 EAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE--HGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD 162 (376)
T ss_dssp HHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECC--TTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC
T ss_pred HHHHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHhhccCceEEEEecccCCcceecC
Confidence 9999999999999999998776643 3466778898888875 34678999999988889999999999999999987
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC-CCCceeEEEEeeCCCCcccchh
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+++|.++|+++|+++|+|++|+.+.. ...+...+. .+++.|+||+++ ++| +|+++++ ++
T Consensus 163 ---l~~i~~l~~~~~~~li~D~~~~~~~~----~~~~~~~~~---d~~~~s~~K~l~~~~G--~g~~~~~--------~~ 222 (376)
T 3f0h_A 163 ---TMMIGEFCKKNNMFFVCDCVSAFLAD----PFNMNECGA---DVMITGSQKVLACPPG--ISVIVLA--------PR 222 (376)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTTTTTS----CCCHHHHTC---SEEEEETTTTTCCCSS--CEEEEEC--------HH
T ss_pred ---HHHHHHHHHHcCCEEEEEcCccccCc----cccccccCc---cEEEecCcccccCCCc--eEEEEEC--------HH
Confidence 88899999999999999999986432 122222222 388899999987 566 6777775 46
Q ss_pred HHHHHHhhhh------------------hccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014603 281 IVDSIKSFLN------------------ISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITC 341 (422)
Q Consensus 281 ~~~~~~~~~~------------------~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 341 (422)
+.+++..... ...+++...+.++.++++...+. .+++..++++++++.+.+.|+++ ++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~ 301 (376)
T 3f0h_A 223 GVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFEL 301 (376)
T ss_dssp HHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEE
T ss_pred HHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence 6666653210 12244444445666666543333 57888899999999999999987 4542
Q ss_pred CCCCCC-ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 342 PKKPEG-SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 342 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
. .+.. ...+.+..+. .+..++...+.+++||.+.+|......+++|++++ ++++++++++++|++++++
T Consensus 302 ~-~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 302 V-SESPANGVTSVHPTT------ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp C-CSSBBTTEEEEEESS------SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred C-ccccCceEEEEeCCC------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2 2222 2222222221 25677777776666999999865445789999996 6899999999999998864
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=268.42 Aligned_cols=331 Identities=12% Similarity=0.130 Sum_probs=233.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC--CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN--CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
++..++||+.+......++ .+|++.+++.+++...... .| +.....++++.+++++ ..+++++++|++
T Consensus 38 ~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~--------g~~~v~~~~gg~ 107 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT--------FGGKVFFANTGT 107 (397)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT--------TSCEEEEESSHH
T ss_pred CCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc--------CCCeEEEeCCHH
Confidence 4677899988732211222 5789999999988653211 12 1122345555555544 257999999999
Q ss_pred HHHHHHHHHhcC------C-CCEEEecCCCccchHH-HHhhCCCe------------EEEeeccCCCCcccCHHHHHHhh
Q 014603 121 QAIEVILTVLAR------P-GANILLPRPGFPYYEA-RATHSHLE------------VRHFDLLPAKGWEVDLDAVEALA 180 (422)
Q Consensus 121 ~a~~~~~~~l~~------~-gd~Vl~~~~~~~~~~~-~~~~~g~~------------~~~~~~~~~~~~~~d~~~l~~~~ 180 (422)
+|+..+++++.. + ++.|++.+|+|++... .+...|.+ ++.++. .|++.|++.+
T Consensus 108 ~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l 180 (397)
T 2ord_A 108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKM 180 (397)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHh
Confidence 999999998763 4 4789999999976543 55666654 444442 2889999999
Q ss_pred cCCceEEEEeCCCCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC
Q 014603 181 DENTVALVIINPGNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 181 ~~~~~~i~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~ 259 (422)
+++++++++++|+||||. +++.+++++|+++|+++|+++|+||+|+++.+.|.. .++..++...+++ |+||.++
T Consensus 181 ~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~d~~---s~sK~~~- 255 (397)
T 2ord_A 181 SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL-FAYQKYGVVPDVL---TTAKGLG- 255 (397)
T ss_dssp CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SHHHHHTCCCSEE---EECGGGG-
T ss_pred hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccc-hhhhhhCCCCCee---eeccccC-
Confidence 888999999999999999 999999999999999999999999999877665532 2223333222322 7799987
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP- 337 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 337 (422)
+|+|+||+++++ ++. .+.... ..+.+++++.+.++.++|+...+ ++..++++++++.+.+.|++++
T Consensus 256 ~G~r~G~~~~~~--------~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 323 (397)
T 2ord_A 256 GGVPIGAVIVNE--------RAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKE 323 (397)
T ss_dssp TTSCCEEEEECS--------TTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCeEEEEEch--------Hhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999874 233 333211 22346688889888888875322 4566778888888888887642
Q ss_pred CCCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 338 CITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 338 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
++... ..+..|.++++.++.. .+..++...+.+ +||.+.|+. ++++|++++ .+++++++++++|+++
T Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~-----~~~~~l~~~l~~-~gi~v~~~~----~~~iRis~~~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 324 EYDVVADVRGMGLMIGIQFREE-----VSNREVATKCFE-NKLLVVPAG----NNTIRFLPPLTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp HCTTEEEEEEETTEEEEEECTT-----SCHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEeEEEEEEECCh-----HHHHHHHHHHHH-CCCEEccCC----CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 12211 1233467888887642 146677777654 799999973 578999975 7899999999999998
Q ss_pred HHH
Q 014603 415 YDR 417 (422)
Q Consensus 415 ~~~ 417 (422)
+++
T Consensus 394 l~~ 396 (397)
T 2ord_A 394 LQG 396 (397)
T ss_dssp HHT
T ss_pred Hhh
Confidence 764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=270.12 Aligned_cols=338 Identities=13% Similarity=0.075 Sum_probs=221.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC---CCCC----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEE
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN---CYSS----TVGILPARRAIADYLNRDLPYKLSPDDVYL 115 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~---~y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~ 115 (422)
+....|.|+.+.+. ++++.+.+++.+.+.....+ .|.. .....++++++++++ ++++++|++
T Consensus 17 ~~~~~iyld~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------~~~~~~v~~ 85 (400)
T 3vax_A 17 RGSHMTYLDAAATT-----RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTV------SAEPDELIF 85 (400)
T ss_dssp -----CCCCCCCCS-----SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHT------TCCGGGEEE
T ss_pred ccCCcEEecCCCCC-----CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHc------CCCCCcEEE
Confidence 45667888777644 66789999999887632111 1111 122456777777776 456789999
Q ss_pred ecCHHHHHHHHHHHhc----CCCC-EEEecCCCccchHHHHh---hCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 116 TLGCTQAIEVILTVLA----RPGA-NILLPRPGFPYYEARAT---HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~----~~gd-~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
|+|+++|++.++++++ ++|| +|+++.++|+++...+. ..|.+++.++.++ ++.+|++.|++.++++++++
T Consensus 86 ~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v 163 (400)
T 3vax_A 86 TSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDTLLV 163 (400)
T ss_dssp ESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTEEEE
T ss_pred eCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCceEE
Confidence 9999999999999997 8999 99999999988755444 3688999888754 45689999999999899999
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWL 267 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~ 267 (422)
++++|+||||.+++ +++|.++|+++|+++|+|++|+.. .....+..+ . .+++.|+||.++.+| +|++
T Consensus 164 ~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~----~~~~~~~~~-~---d~~~~s~~K~~g~~g--~g~~ 230 (400)
T 3vax_A 164 SLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYG----KVPGDLTTP-I---DMISISGHKIGAPKG--VGAL 230 (400)
T ss_dssp ECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTT----TSGGGGGSC-C---SEEEEETGGGTSCSS--CEEE
T ss_pred EEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcC----CCCcChhhc-C---cEEEEeHHHhCCCCc--eEEE
Confidence 99999999999976 678888999999999999999752 222222222 2 388999999866555 6777
Q ss_pred E-eeCCCCcccchhHHHHHH----hhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014603 268 V-TSDPNGILQDSGIVDSIK----SFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP 342 (422)
Q Consensus 268 ~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 342 (422)
+ +++.........+...+. ......++++...+.++..+++.. ..++++.+++++++++.+.+.|+ .+++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~ 308 (400)
T 3vax_A 231 VTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVN 308 (400)
T ss_dssp EECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEEC
T ss_pred EEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEe
Confidence 7 764210000000111010 011123456667777777777642 34678889999999999999999 7787733
Q ss_pred CCCCC---ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEe-c-
Q 014603 343 KKPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITF-A- 398 (422)
Q Consensus 343 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~-~- 398 (422)
.+.. +.++++.++.. +..++...+. +||.+.+|..|.. .+++||++ +
T Consensus 309 -~~~~~~~~~~~~~~~~~~------~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~ 379 (400)
T 3vax_A 309 -GDQDHVVPHILNLSFEDV------DAEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPG 379 (400)
T ss_dssp -SCTTSBCTTEEEEECTTC------CHHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC
T ss_pred -CCcccCCCCEEEEEeCCC------CHHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCC
Confidence 4443 34666666531 5667766664 7999999865532 38999999 6
Q ss_pred -cChHHHHHHHHHHHHHHHH
Q 014603 399 -VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 399 -~~~~~l~~~~~~l~~~~~~ 417 (422)
.+++++++++++|++++++
T Consensus 380 ~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 380 QATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp --------------------
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 6789999999999988764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=260.85 Aligned_cols=327 Identities=17% Similarity=0.157 Sum_probs=238.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC-CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN-CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+++.++||+.+.+....+ ..+|.+.+++.+++...... .+.+.....++++.+++++ .++++++++|+++
T Consensus 34 ~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~--------g~~~v~~~~~gt~ 104 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQG-HRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT--------NKEMVLPMNTGAE 104 (392)
T ss_dssp TCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH--------TCSEEEEESSHHH
T ss_pred CCCEEEEcCCChhhhccC-CCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc--------CCCEEEEeCcHHH
Confidence 578899999875442122 25799999999988653221 1122345678888888887 3679999999999
Q ss_pred HHHHHHHHhcCC----------CCEEEecCCCccchHHHHhhCCCe-------------EEEeeccCCCCcccCHHHHHH
Q 014603 122 AIEVILTVLARP----------GANILLPRPGFPYYEARATHSHLE-------------VRHFDLLPAKGWEVDLDAVEA 178 (422)
Q Consensus 122 a~~~~~~~l~~~----------gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~ 178 (422)
|++.+++.+..+ +|+|+++.++|+++...+...+.. +..++. .|++.|++
T Consensus 105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 177 (392)
T 3ruy_A 105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKA 177 (392)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHH
T ss_pred HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHH
Confidence 999999877543 689999999998876555443221 222221 27899999
Q ss_pred hhcCCceEEEEeCCCCCcccccCHHH-HHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc
Q 014603 179 LADENTVALVIINPGNPCGNVYTYQH-LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW 257 (422)
Q Consensus 179 ~~~~~~~~i~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~ 257 (422)
.++++++++++++|+||||.+++.++ +++|.++|++||+++|+||+|+++.+.|... .....+...++ .++||.+
T Consensus 178 ~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~d~---~~~SK~l 253 (392)
T 3ruy_A 178 AITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF-ACDWDNVTPDM---YILGKAL 253 (392)
T ss_dssp HCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---EEECGGG
T ss_pred HhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch-hhhccCCCCCE---EEEchhh
Confidence 99888999999999999999986555 9999999999999999999998776665432 22222322233 3668985
Q ss_pred CCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 258 IVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 258 ~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
.+| +|+||++++ +++++.+..... .+.+++++.+.++.++++.... ++..++++++++.+.+.|++
T Consensus 254 -~gG~~~~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 321 (392)
T 3ruy_A 254 -GGGVFPISCAAAN--------RDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKE 321 (392)
T ss_dssp -GTTTSCCEEEEEC--------HHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTT
T ss_pred -hCChhhhEEEEEC--------HHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH
Confidence 347 999999986 456665554432 3457788999999999876321 66788899999999999998
Q ss_pred CC--CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHH
Q 014603 336 IP--CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 336 ~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l 411 (422)
+. .+. . .+..|.++++.++. +..++...+ .++||.+.||. .+++|++++ ++++++++++++|
T Consensus 322 ~~~~~~~-~-~~~~g~~~~~~~~~-------~~~~l~~~l-~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l 387 (392)
T 3ruy_A 322 IDNPMIT-E-VRGKGLFIGIELNE-------PARPYCEQL-KAAGLLCKETH----ENVIRIAPPLVISEEDLEWAFQKI 387 (392)
T ss_dssp CCCTTEE-E-EEEETTEEEEEESS-------CSHHHHHHH-HTTTEECCCBT----TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred hcCCCce-E-EEeeeeEEEEEEcc-------hHHHHHHHH-HHCCcEEecCC----CCEEEEECCCCCCHHHHHHHHHHH
Confidence 72 232 2 22235566666653 356676666 46799999875 689999976 7899999999999
Q ss_pred HHHH
Q 014603 412 KAFY 415 (422)
Q Consensus 412 ~~~~ 415 (422)
++++
T Consensus 388 ~~~l 391 (392)
T 3ruy_A 388 KAVL 391 (392)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=264.87 Aligned_cols=358 Identities=15% Similarity=0.094 Sum_probs=236.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..+.+....+ +.+|.+.+++.+++... ..|....+..+.+..+++++.+..+. ...++|++|+||++|
T Consensus 62 ~G~~ylD~~~~~~~~~lG-h~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~~~sGseA 137 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVG-ASHPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPG-DHDKRTALFNSGAEA 137 (453)
T ss_dssp TSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSC-SSCEEEEEESSHHHH
T ss_pred CCCEEEEcCCCcccCcCC-CCCHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCC-CCCcEEEEeCcHHHH
Confidence 477789999885442222 34899999999998763 23443334456666666666665431 135799999999999
Q ss_pred HHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCC--------------eEEEeeccC--CCCcccC--------HHHH
Q 014603 123 IEVILTVLAR--PGANILLPRPGFPYYEARATHSHL--------------EVRHFDLLP--AKGWEVD--------LDAV 176 (422)
Q Consensus 123 ~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~--~~~~~~d--------~~~l 176 (422)
++.+++.+.. .++.|++.+++|+++...+...+. .+..++... .+.++.+ .+.|
T Consensus 138 ~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l 217 (453)
T 4ffc_A 138 VENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRI 217 (453)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHH
Confidence 9999987642 458999999999987655543321 344454421 1112222 3556
Q ss_pred HHhhcCCceEEEEeCCCCCcc--cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCc
Q 014603 177 EALADENTVALVIINPGNPCG--NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS 254 (422)
Q Consensus 177 ~~~~~~~~~~i~i~~p~nptG--~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s 254 (422)
++.+.+++.++++++|.|++| ..++.+.+++|.++|++||+++|+||+|.++.+.|.. ......+...+ +.+||
T Consensus 218 ~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~-~a~~~~~~~pd---i~t~s 293 (453)
T 4ffc_A 218 ETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAW-FASEHEGIVPD---IVTMA 293 (453)
T ss_dssp HHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTCCCS---EEEEC
T ss_pred HHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccccc-chhhhcCCCcc---hHhhh
Confidence 666666678888999977776 4557788999999999999999999999987766542 12222232222 44688
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHH
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDR 332 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~ 332 (422)
|.+++ |+|+||++++ +++++.+.... ..+.+.++++++++.++|+... +...++.++.....++.+.+.
T Consensus 294 K~~~~-G~~~G~~~~~--------~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~ 364 (453)
T 4ffc_A 294 KGIAG-GMPLSAVTGR--------AELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSAL 364 (453)
T ss_dssp GGGGT-TSSCEEEEEE--------HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcC-CcCeEEEEEC--------HHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99866 9999999986 46776665443 2345778899999999987533 233344444444444555555
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccc--cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLL--EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~ 408 (422)
++++|.+. . .+..|.++++.+..... +......++...+ .++||.+.|+..+ .+++|++++ ++++++++++
T Consensus 365 ~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l 439 (453)
T 4ffc_A 365 AEEVDIIG-E-VRGRGAMLAIEIVKPGTLEPDAALTKSIAAEA-LSQGVLILTCGTF--GNVIRLLPPLVIGDDLLDEGI 439 (453)
T ss_dssp HHHCSSEE-E-EEEETTEEEEEEBCTTSCCBCHHHHHHHHHHH-HHTTEECCEECTT--SCEEEECCCTTCCHHHHHHHH
T ss_pred HhhCCCeE-E-EEeeceEEEEEEecCcccCCCHHHHHHHHHHH-HhCCCEEecCCCC--CCEEEEECCCCCCHHHHHHHH
Confidence 55565443 2 23446788887742100 0000134455554 5669999997654 478999887 6899999999
Q ss_pred HHHHHHHHHhcccC
Q 014603 409 GRMKAFYDRHAKKQ 422 (422)
Q Consensus 409 ~~l~~~~~~~~~~~ 422 (422)
++|++++++..++|
T Consensus 440 ~~l~~~l~~~~~~~ 453 (453)
T 4ffc_A 440 TALSDIIRAKASHQ 453 (453)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=254.72 Aligned_cols=326 Identities=17% Similarity=0.167 Sum_probs=226.7
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
..+|+|+.+... .+++.+++++.+.... ...|.+..+..++|++++++++ .+++++++||++++.
T Consensus 3 ~~~i~~~~~~~~-----~p~~~~~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~ 67 (347)
T 1jg8_A 3 HMMIDLRSDTVT-----KPTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQ 67 (347)
T ss_dssp --CEECSCGGGC-----CCCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHH
T ss_pred ceEEEeccccCC-----CCCHHHHHHHhcCCCC--CcccCCChHHHHHHHHHHHHhC--------CceEEEecCcHHHHH
Confidence 567999998744 3567888888765322 2357776788899999999983 246888899999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchH---HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCC
Q 014603 125 VILTVLARPGANILLPRPGFPYYE---ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNP 195 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~np 195 (422)
+++.+++++||+|++++|+|.... ..+...|.+++.+ .. .++.+|++.+++.+++ +++++++++|+||
T Consensus 68 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~np 144 (347)
T 1jg8_A 68 VSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNR 144 (347)
T ss_dssp HHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTT
T ss_pred HHHHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccc
Confidence 999999999999999999996532 2566778888777 32 3456899999998875 5889999999999
Q ss_pred c-ccccCHHHHHHHHHHHHHcCcEEEEccccccc--ccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEE-EEeeC
Q 014603 196 C-GNVYTYQHLQKIAETAKKLGIMVIADEVYDHL--AFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW-LVTSD 271 (422)
Q Consensus 196 t-G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~--~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~-~~~~~ 271 (422)
| |.++|.+++++|+++|+++|+++|+|++|... .+.+.....+. ... + .++.|+||+++++ +|+ ++.+
T Consensus 145 t~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~-d--~~~~s~sK~l~~~---~G~~~~~~- 216 (347)
T 1jg8_A 145 SGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA-GYA-D--SVMFCLSKGLCAP---VGSVVVGD- 216 (347)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH-HTC-S--EEEEESSSTTCCS---SCEEEEEC-
T ss_pred cCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc-ccc-c--EEEEecccccCCC---ceEEEEcC-
Confidence 9 99999999999999999999999999987531 11122111111 112 2 3445899997643 575 4443
Q ss_pred CCCcccchhHHHHHHhhhhhc-c--CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 272 PNGILQDSGIVDSIKSFLNIS-S--DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
+++++++....... + ..+...+.++..+++... +.. ++..++++.+.+.|+++ ++.+...+..+
T Consensus 217 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-~~~~~~~~~l~~~L~~~-~~~~~~~~~~~ 283 (347)
T 1jg8_A 217 -------RDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV----DRL-KEDHENARFLALKLKEI-GYSVNPEDVKT 283 (347)
T ss_dssp -------HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS----TTH-HHHHHHHHHHHHHHHHH-TCBCCGGGCCS
T ss_pred -------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHhc-CceeccCCCcc
Confidence 45776665543322 1 223344555555554321 111 22334667778888776 66532234556
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.++|+.++.. + .+..++...+. ++||.+.++. .+++|++++ ++++++++++++|+++++++
T Consensus 284 ~~~~~~~~~~---~-~~~~~~~~~l~-~~gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 284 NMVILRTDNL---K-VNAHGFIEALR-NSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp SEEEEECTTS---S-SCHHHHHHHHH-HHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccc---c-CCHHHHHHHHH-HCCCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7888888631 1 14677777774 5699998853 478999986 68999999999999988654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=265.69 Aligned_cols=351 Identities=14% Similarity=0.080 Sum_probs=231.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++..++||..+......++ .+|++.+++.+++..... +. ..+..+.+..+++.+.+.+ +.++++|++|+|+++|
T Consensus 41 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~--~~-~~~~~~~~~~l~~~la~~~--~~~~~~v~~~~gg~ea 114 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDH--LF-SEMLSRPVVDLATRLANIT--PPGLDRALLLSTGAES 114 (433)
T ss_dssp TCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCC--CC-TTCCCHHHHHHHHHHHHHS--CTTCCEEEEESCHHHH
T ss_pred CCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCcc--cc-cccCCHHHHHHHHHHHHhC--CCCcCEEEEeCchHHH
Confidence 4677899977764322232 578999999999875321 11 1122233444444444433 3457899999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhhC------------CCeEEEeeccC--CCCc--------ccCHHHHHH
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATHS------------HLEVRHFDLLP--AKGW--------EVDLDAVEA 178 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~------------g~~~~~~~~~~--~~~~--------~~d~~~l~~ 178 (422)
++.+++.+. ..+++|++.+|+|+++...+... ..++..++... ...+ .+|++.|++
T Consensus 115 ~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~ 194 (433)
T 1zod_A 115 NEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFD 194 (433)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHH
Confidence 999998653 23589999999998865543321 11334443321 1112 236889988
Q ss_pred hhcC---CceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecC
Q 014603 179 LADE---NTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSI 253 (422)
Q Consensus 179 ~~~~---~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 253 (422)
.+++ +..++++++| +||||. .++.+++++|.++|++||+++|+||+|+++.+.|.. ..+...+...+ +.|+
T Consensus 195 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~-~~~~~~~~~~d---i~s~ 270 (433)
T 1zod_A 195 LIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM-FACQRDGVTPD---ILTL 270 (433)
T ss_dssp HHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-STHHHHTCCCS---EEEE
T ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchH-hHHhhcCCCCC---EEEe
Confidence 8763 3445666788 588996 577889999999999999999999999987665532 12222222222 3478
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-h--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-N--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICC 330 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 330 (422)
||.|++ |+|+||++++ +++++.+.... . .+.+.+++++.++.++++...+ +...++++++++.+.
T Consensus 271 sK~~~~-G~~ig~~~~~--------~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~ 338 (433)
T 1zod_A 271 SKTLGA-GLPLAAIVTS--------AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR---DGLVARANVMGDRLR 338 (433)
T ss_dssp CHHHHT-TSSCEEEEEC--------HHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHH
T ss_pred cccccC-CCCeeEEEEh--------HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHH
Confidence 999875 9999999986 46777776532 1 3346688899888888875322 234455666666666
Q ss_pred HHhhc----CCCCCCCCCCCCceEEEEecCcccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cCh
Q 014603 331 DRLKE----IPCITCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEP 401 (422)
Q Consensus 331 ~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~ 401 (422)
+.|++ ++.+. . .+..|.++|+.++.... .......++...++ ++||.+.||..|+.++++||+++ +++
T Consensus 339 ~~l~~l~~~~~~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~lRi~~~~~~t~ 415 (433)
T 1zod_A 339 RGLLDLMERFDCIG-D-VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPGMGGVFRIAPPLTVSE 415 (433)
T ss_dssp HHHHHHHHHCTTEE-E-EEEETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTTSCCEEEECCCTTCCH
T ss_pred HHHHHHHHhCCCeE-E-EEEEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCCCCCEEEEECCcCCCH
Confidence 66655 34332 2 23346788887753100 00012455666664 67999999887655689999875 789
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014603 402 SALEDGLGRMKAFYDRH 418 (422)
Q Consensus 402 ~~l~~~~~~l~~~~~~~ 418 (422)
+++++++++|+++++++
T Consensus 416 ~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 416 DEIDLGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=258.74 Aligned_cols=339 Identities=15% Similarity=0.117 Sum_probs=233.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC---CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF---NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
++..++||..+.+....+ +.+|++.+++.+++..... ..|+. ....++++++++++ ++++++|++|+|+
T Consensus 41 ~g~~ylD~~~~~~~~~lg-~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~------~~~~~~v~~~~gg 112 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMT------PQPLECVFLADSG 112 (429)
T ss_dssp TSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHS------CTTCCEEEEESSH
T ss_pred CCCEEEEcCccHhhccCC-CCCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhC------CCCCCEEEEeCCH
Confidence 577789998887543233 2579999999999865322 13322 22356666777666 4578899999999
Q ss_pred HHHHHHHHHHhc---C----CCCEEEecCCCccchHHHHhhC-C-------------CeEEEeeccC---CCCc-ccCHH
Q 014603 120 TQAIEVILTVLA---R----PGANILLPRPGFPYYEARATHS-H-------------LEVRHFDLLP---AKGW-EVDLD 174 (422)
Q Consensus 120 ~~a~~~~~~~l~---~----~gd~Vl~~~~~~~~~~~~~~~~-g-------------~~~~~~~~~~---~~~~-~~d~~ 174 (422)
++|++.+++++. + +||+|++.+|+|+++...+... + .++..++... .+.+ ..|++
T Consensus 113 tea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 192 (429)
T 1s0a_A 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHH
Confidence 999999988653 2 6899999999998764433221 1 1344444421 1123 47899
Q ss_pred HHHHhhcC--CceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 175 AVEALADE--NTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 175 ~l~~~~~~--~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
.|++.+++ ...++++++| +||||. .++.+++++|.++|+++|+++|+||+|.++.+.|... .+...+...++
T Consensus 193 ~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~-~~~~~~~~~d~-- 269 (429)
T 1s0a_A 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDI-- 269 (429)
T ss_dssp HHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE--
T ss_pred HHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH-HhhhcCCCCCE--
Confidence 99988863 3344566777 589996 5678889999999999999999999998766554321 22222222232
Q ss_pred EecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF------LNISSDPATFIQGAVPQILEKTEEEFFSKITDIL 322 (422)
Q Consensus 250 i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 322 (422)
.|+||.++ +| +|+||++++ +++++.+... ...+.+++++++.++.++++...+ ++..+++
T Consensus 270 -~t~sK~l~-~G~~~iG~~~~~--------~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~ 336 (429)
T 1s0a_A 270 -LCLGKALT-GGTMTLSATLTT--------REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GDWQQQV 336 (429)
T ss_dssp -EEECGGGG-TSSSCCEEEEEC--------HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHH
T ss_pred -EEeccccc-CCCccceEEEeC--------HHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHH
Confidence 36889976 58 999999986 4677777653 122346688899998888875322 2355677
Q ss_pred HHHHHHHHHHhhcC---CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-
Q 014603 323 RETADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA- 398 (422)
Q Consensus 323 ~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~- 398 (422)
+++++.+.+.|+++ |++. . .+..|.++|+.++.. .+..++...+. ++||.+.++ .+++||+++
T Consensus 337 ~~~~~~l~~~L~~l~~~~~~~-~-~~~~g~~~~~~~~~~-----~~~~~l~~~l~-~~Gi~v~~~-----~~~iRis~~~ 403 (429)
T 1s0a_A 337 ADIEVQLREQLAPARDAEMVA-D-VRVLGAIGVVETTHP-----VNMAALQKFFV-EQGVWIRPF-----GKLIYLMPPY 403 (429)
T ss_dssp HHHHHHHHHHHGGGGGCTTEE-E-EEEETTEEEEEESSC-----BCHHHHHHHHH-HTTEECCCB-----TTEEEECCCT
T ss_pred HHHHHHHHHHHHHHhcCCCEE-E-EEEeeEEEEEEECCc-----ccHHHHHHHHH-HCCCEEecc-----CCEEEEECCC
Confidence 77888888888775 4433 1 123466888887642 14566767665 569999874 378999976
Q ss_pred -cChHHHHHHHHHHHHHHHHh
Q 014603 399 -VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 399 -~~~~~l~~~~~~l~~~~~~~ 418 (422)
++++++++++++|+++++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSG
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 78999999999999987654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=258.55 Aligned_cols=335 Identities=16% Similarity=0.148 Sum_probs=232.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++..++||+.|......++ .+|.+.+++.+++..... +.. ....++++.+++.+.+..| .+++++++|+++|
T Consensus 55 ~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA 126 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWH--TSN-VFTNEPALRLGRKLIDATF----AERVLFMNSGTEA 126 (420)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCC--CCT-TSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHH
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHHhccc--ccC-ccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHH
Confidence 5778999988742211222 678999999999875321 111 1123445555555544333 5799999999999
Q ss_pred HHHHHHHhcC-------CC-CEEEecCCCccchHHH-HhhCCCe------------EEEeeccCCCCcccCHHHHHHhhc
Q 014603 123 IEVILTVLAR-------PG-ANILLPRPGFPYYEAR-ATHSHLE------------VRHFDLLPAKGWEVDLDAVEALAD 181 (422)
Q Consensus 123 ~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~-~~~~g~~------------~~~~~~~~~~~~~~d~~~l~~~~~ 181 (422)
++.+++++.. +| ++|++++|+|+++... ....|.+ +..++. .|++.|++.++
T Consensus 127 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~ 199 (420)
T 2pb2_A 127 NETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMD 199 (420)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhc
Confidence 9999998765 67 5999999999876443 3344432 333332 28899999998
Q ss_pred CCceEEEEeCCCCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC
Q 014603 182 ENTVALVIINPGNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP 260 (422)
Q Consensus 182 ~~~~~i~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~ 260 (422)
+++++++++.++|++|. +++.+++++|.++|+++|+++|+||+|.++.++|... .+...+..++++ |+||.++ +
T Consensus 200 ~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~-~~~~~~~~~dii---t~sK~l~-~ 274 (420)
T 2pb2_A 200 DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF-AYMHYGVTPDIL---TSAKALG-G 274 (420)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCCCSEE---EECGGGG-T
T ss_pred cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH-HHHhcCCCCCeE---Eeccccc-C
Confidence 88888887777888884 6899999999999999999999999998876665422 122223223333 6799987 8
Q ss_pred CceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---
Q 014603 261 GWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI--- 336 (422)
Q Consensus 261 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 336 (422)
|+|+||++++ +++++.+.... ..+.++++++++++.++|+...+ ++..++++++++++.+.|+++
T Consensus 275 G~~iG~~~~~--------~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 275 GFPVSAMLTT--------QEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp TSCCEEEEEC--------HHHHTTCC----CCEECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEh--------HHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999986 34555554422 23346788999998888875332 345667777777777777654
Q ss_pred -CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 337 -PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 337 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
|.+. . .+..|.++++.++... ..+..++...+. ++||.+.|+. ++++|++++ ++++++++++++|++
T Consensus 344 ~~~~~-~-~~~~g~~~~v~~~~~~---~~~~~~l~~~l~-~~Gi~v~~~~----~~~iRl~~~~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 344 FDIFS-D-IRGMGLLIGAELKPKY---KGRARDFLYAGA-EAGVMVLNAG----ADVMRFAPSLVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp HCCEE-E-EEEETTEEEEEECGGG---TTCHHHHHHHHH-HTTEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCCeE-E-EEecceEEEEEECCCc---hHHHHHHHHHHH-HCCCEEEeCC----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3322 1 1234678888876421 013566766665 4799999874 578999975 789999999999999
Q ss_pred HHHHh
Q 014603 414 FYDRH 418 (422)
Q Consensus 414 ~~~~~ 418 (422)
+++++
T Consensus 414 ~l~~~ 418 (420)
T 2pb2_A 414 AVGKV 418 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=259.33 Aligned_cols=348 Identities=14% Similarity=0.096 Sum_probs=230.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~ 121 (422)
+++.++||+.+.+....++ .+|.+.+++.+++... ..|....+..++++.+++++.+.++ ... +++++++|+++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~~v~~~~ggse 115 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFP--GEGTHKIWFGHSGSD 115 (439)
T ss_dssp TSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTT--CTTTEEEEEESSHHH
T ss_pred CCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCC--CCCCCEEEEeCCHHH
Confidence 5788999999987532332 6899999999998764 2454445566777777777776553 234 69999999999
Q ss_pred HHHHHHHHh--cCCCCEEEecCCCccchHHHHhhCCCe-E--------------EEeeccCCCCccc-----CHHHHHHh
Q 014603 122 AIEVILTVL--ARPGANILLPRPGFPYYEARATHSHLE-V--------------RHFDLLPAKGWEV-----DLDAVEAL 179 (422)
Q Consensus 122 a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~-~--------------~~~~~~~~~~~~~-----d~~~l~~~ 179 (422)
|++.+++++ ..+++.|++.++.|+++...+...+.. . ..++.. ..+.. |++.|++.
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~ 193 (439)
T 3dxv_A 116 ANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR--PYRNDPTGDAILTLLTEK 193 (439)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS--CBTTBTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC--cccccccHHHHHHHHHHH
Confidence 999999885 235678999999998776555443322 1 122221 11111 68899998
Q ss_pred h----cCCceEEEEeCCCCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCc
Q 014603 180 A----DENTVALVIINPGNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS 254 (422)
Q Consensus 180 ~----~~~~~~i~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s 254 (422)
+ .+++++++++.++|++|.+. +.+.+++|.++|++||+++|+||+|+++.+.|.. ......+...+++ |+|
T Consensus 194 l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~-~~~~~~~~~~di~---s~s 269 (439)
T 3dxv_A 194 LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRL-HCFEHEGFVPDIL---VLG 269 (439)
T ss_dssp HHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSS-SGGGGTTCCCSEE---EEC
T ss_pred HHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh-hHHHhcCCCCCEE---EEc
Confidence 8 34555565555577788765 5555999999999999999999999977665542 1222333222332 889
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (422)
|.++ +|+|+||++++ +++++.+.... ..+. .++++++++.++|+...+ ++..++++++.+.+++.|
T Consensus 270 K~~~-~G~riG~~~~~--------~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l 336 (439)
T 3dxv_A 270 KGLG-GGLPLSAVIAP--------AEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGL 336 (439)
T ss_dssp GGGG-TTSCCEEEEEE--------HHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred chhc-CCcceEEEEEC--------HHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 9987 59999999986 46666665442 2344 788889888888875332 233444444444444444
Q ss_pred h----cCCCCCCCCCCCCceEEEEecCcccc---cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHH
Q 014603 334 K----EIPCITCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSAL 404 (422)
Q Consensus 334 ~----~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l 404 (422)
+ .++.+. . .+..|.++++.+..... +......++...++ ++||.+.|+..+ .+++||+++ ++++++
T Consensus 337 ~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~i 411 (439)
T 3dxv_A 337 SELAKRHPLIG-D-IRGRGLACGMELVCDRQSREPARAETAKLIYRAY-QLGLVVYYVGMN--GNVLEFTPPLTITETDI 411 (439)
T ss_dssp HHHHHHCTTEE-E-EEEETTEEEEEEEEETTTTEECHHHHHHHHHHHH-HHTEECEEESTT--SCEEEECCCTTCCHHHH
T ss_pred HHHHHhCCCeE-E-EEEEEEEEEEEEecCccccCCCHHHHHHHHHHHH-HCCcEEeecCCC--CCEEEEECCCCCCHHHH
Confidence 4 444443 2 33446777777621100 00012445666654 459999998532 489999876 689999
Q ss_pred HHHHHHHHHHHHHhc
Q 014603 405 EDGLGRMKAFYDRHA 419 (422)
Q Consensus 405 ~~~~~~l~~~~~~~~ 419 (422)
++++++|+++++++.
T Consensus 412 ~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 412 HKALDLLDRAFSELS 426 (439)
T ss_dssp HHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998763
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=249.92 Aligned_cols=331 Identities=15% Similarity=0.072 Sum_probs=222.9
Q ss_pred CC-CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 44 TR-PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 44 ~~-~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
|. +++|++.+.+. .++++++++++.. ...| ..+++.+++.+.+.+|.. +++++++++|++++
T Consensus 26 g~~~v~~~~~~~~~----~~~~~~v~~a~~~------~~~~------~~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a 88 (374)
T 2aeu_A 26 GRDALYDLSGLSGG----FLIDEKDKALLNT------YIGS------SYFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSA 88 (374)
T ss_dssp CGGGCEECSSCCCC----CCCCHHHHHHHTS------TTHH------HHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHH
T ss_pred CccceeeecccCCC----CCCCHHHHHHHHH------hcCc------hHHHHHHHHHHHHHhCCC-CcceEEEEcChHHH
Confidence 55 78999988744 4788999998861 1111 233444554444333322 34789999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceE-EEEeCCCCCccc
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA-LVIINPGNPCGN 198 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-i~i~~p~nptG~ 198 (422)
+..++.++ +||+|+++.|+|+++.. .++..|.+++.+ .|++.+++. ++++++ +++++|+||||.
T Consensus 89 ~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~~~~~~v~~~~p~nptG~ 156 (374)
T 2aeu_A 89 ILATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-IDKDTLVIITGSTMDLKVI 156 (374)
T ss_dssp HHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CCTTEEEEEECBCTTSCBC
T ss_pred HHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CCCccEEEEEccCCCCCCC
Confidence 99999988 99999999998876433 566788888766 278899888 778899 889999999996
Q ss_pred ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 199 VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 199 ~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
+..++++|.++|+++|+++|+|++|+.+.............+. .++++|+||++ +|+|+||++++
T Consensus 157 --~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~---di~~~S~sK~l--~g~~~G~~~~~-------- 221 (374)
T 2aeu_A 157 --ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGA---DLVVTSTDKLM--EGPRGGLLAGK-------- 221 (374)
T ss_dssp --CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTC---SEEEEETTSSS--SSCSCEEEEEE--------
T ss_pred --CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCC---cEEEecCcccc--cCcceEEEEEC--------
Confidence 5589999999999999999999999765310000000112222 38899999984 46899999986
Q ss_pred hhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH----HHHHHHHhhcC---CCCCCCCCCCCceE
Q 014603 279 SGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRET----ADICCDRLKEI---PCITCPKKPEGSMF 350 (422)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~---~~~~~~~~~~~g~~ 350 (422)
+++++++...... ..+++++.+.++.++++......+++..+..+.. ++.+.+.|..+ +++.+...|.+.++
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~ 301 (374)
T 2aeu_A 222 KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI 301 (374)
T ss_dssp HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE
T ss_pred HHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE
Confidence 5788888766543 3356788888888888764322233333333333 45666666554 24442224554444
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-CCCeEEEEecc-C--hHHHHHHHHHHHHHHHHhcc
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-LKDWLRITFAV-E--PSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~iRis~~~-~--~~~l~~~~~~l~~~~~~~~~ 420 (422)
.|..++... ...++.++...+++++||.+.||..|. ..+++||+++. + +.+++++++.|+++++++.+
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 302 KRVYKDDTI--NIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp EEEESSHHH--HHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred Eeecccccc--cccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 554443110 000112255567777899999997763 35799999973 2 33588888988888887653
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=254.95 Aligned_cols=333 Identities=13% Similarity=0.132 Sum_probs=229.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC--CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS--STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+++.++||+.+.+....+ ..+|++.+++.+++..... .|. +.....++++++++++ .++++++++||+
T Consensus 34 ~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~--------~~~~v~~~~gg~ 103 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALG-YNHAKFNAKIKAQVDKLLH-TSNLYYNENIAAAAKNLAKAS--------ALERVFFTNSGT 103 (395)
T ss_dssp TCCEEEESSHHHHTCTTC-BSCHHHHHHHHHHHTTCSC-CCTTSBCHHHHHHHHHHHHHH--------TCSEEEEESSHH
T ss_pred CCCEEEECCCcHHhccCC-CCCHHHHHHHHHHHHhccc-cccccCCHHHHHHHHHHHHhc--------CCCeEEEeCCHH
Confidence 578899999886442222 2579999999999875321 121 1222344555555554 257999999999
Q ss_pred HHHHHHHHHhc-------CCCCEEEecCCCccchHHHHhhCC-------------CeEEEeeccCCCCcccCHHHHHHhh
Q 014603 121 QAIEVILTVLA-------RPGANILLPRPGFPYYEARATHSH-------------LEVRHFDLLPAKGWEVDLDAVEALA 180 (422)
Q Consensus 121 ~a~~~~~~~l~-------~~gd~Vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~d~~~l~~~~ 180 (422)
+|++.+++.+. .++++|++.+|+|+++...+...+ .++..++. .|++.|++.+
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l 176 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLV 176 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhc
Confidence 99999998775 357999999999998754444332 23333321 2789999999
Q ss_pred cCCceEEEEeCCCCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC
Q 014603 181 DENTVALVIINPGNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 181 ~~~~~~i~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~ 259 (422)
+++++++++..++|++|.. ++.+++++|.++|++||+++|+||+|.++.+.|... .....+.. ..+.|+||.+++
T Consensus 177 ~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-~~~~~~~~---~d~~t~sK~~~~ 252 (395)
T 3nx3_A 177 NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF-AYEHAQIL---PDIMTSAKALGC 252 (395)
T ss_dssp CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCC---CSEEEECGGGTT
T ss_pred cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch-hHHhcCCC---CCEEEecccccC
Confidence 8778777777777777765 778889999999999999999999999876655321 22222222 224468899864
Q ss_pred CCceeEEEEeeCCCCcccchhH-HHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 260 PGWRLGWLVTSDPNGILQDSGI-VDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
|+|+||++++ +++ .+.+.... ..+.+.++++++++.++|+... +...++.++..+..++.+.+.+.++
T Consensus 253 -G~~~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (395)
T 3nx3_A 253 -GLSVGAFVIN--------QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEF 323 (395)
T ss_dssp -TSCCEEEEEC--------HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCceEEEEEc--------hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999986 456 66665543 2345778899999988887532 2334444444444455555545455
Q ss_pred CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 337 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
|.+. . .+..|.++++.++.. .+..++...+ .++||.+.++. .+++|++++ ++++++++++++|+++
T Consensus 324 ~~~~-~-~~~~g~~~~~~~~~~-----~~~~~~~~~l-~~~Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~ 391 (395)
T 3nx3_A 324 DFCK-K-RKGLGFMQGLSLDKS-----VKVAKVIQKC-QENALLLISCG----ENDLRFLPPLILQKEHIDEMSEKLRKA 391 (395)
T ss_dssp TTEE-E-EEEETTEEEEEECTT-----SCHHHHHHHH-HHTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCeE-E-EEeEEEEEEEEeCCc-----chHHHHHHHH-HHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5443 2 234467888888642 1456666665 55699999874 689999976 6899999999999998
Q ss_pred HHH
Q 014603 415 YDR 417 (422)
Q Consensus 415 ~~~ 417 (422)
+++
T Consensus 392 l~~ 394 (395)
T 3nx3_A 392 LKS 394 (395)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=248.20 Aligned_cols=327 Identities=11% Similarity=0.031 Sum_probs=231.8
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
..++|+-|. .+.++.+.+++.+.+.+.....+.......++.+.+.+.+.+.+|.. +++++++|+|++++++.
T Consensus 4 ~~~~~~p~p------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~ 76 (362)
T 3ffr_A 4 NKIYFTPGP------SELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWER 76 (362)
T ss_dssp CCEEECSSS------CCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHH
T ss_pred cceeccCCC------cCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHH
Confidence 346665553 35678888888887765431111112222233444444444444422 46789999999999999
Q ss_pred HHHHhcCCCCEEEecCCCcc-chHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHH
Q 014603 126 ILTVLARPGANILLPRPGFP-YYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 126 ~~~~l~~~gd~Vl~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
++.++.++ +.+++..+.|. .+...++..|.+++.++.+ .++.+|++.|+ ++++++++++++|+||||.+++
T Consensus 77 ~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 77 IIQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFYPADIT--VPADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp HHHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---
T ss_pred HHHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---
Confidence 99999887 44445555554 2345667789999988874 34678999988 6778999999999999999987
Q ss_pred HHHHHHHHHHc-CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC-CCCceeEEEEeeCCCCcccchhHH
Q 014603 205 LQKIAETAKKL-GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 205 l~~i~~~~~~~-~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~ 282 (422)
+++|.++|+++ |+++|+|++|+.... ..++.. ..+++.|+||+++ ++| +|+++++ ++++
T Consensus 149 l~~i~~la~~~p~~~li~D~a~~~~~~----~~~~~~-----~d~~~~s~~K~~~~~~G--~g~~~~~--------~~~~ 209 (362)
T 3ffr_A 149 VEDINTFRDKNKDALIFVDAVSSLPYP----KFDWTK-----IDSVFFSVQKCFGLPAG--LGVWILN--------DRVI 209 (362)
T ss_dssp HHHHTTSGGGSTTSEEEEECTTTTTSS----CCCTTS-----CSEEEEETTSTTCCCSC--CEEEEEE--------HHHH
T ss_pred HHHHHHHHHhCCCCEEEEecccccCCc----ccChhH-----CcEEEEecccccCCCCc--eEEEEEC--------HHHH
Confidence 67788889999 999999999876321 112221 2388899999987 677 5777775 4566
Q ss_pred HHHHhhhh----------------------hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014603 283 DSIKSFLN----------------------ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 283 ~~~~~~~~----------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 340 (422)
+++..... ..++++...+.++..+++...+..+++..++++++++.+.+.|+++|++.
T Consensus 210 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 289 (362)
T 3ffr_A 210 EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFS 289 (362)
T ss_dssp HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEE
T ss_pred HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCce
Confidence 66654332 13466777777777777643334478889999999999999999998877
Q ss_pred CCCCC----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 341 CPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 341 ~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
+. .+ ..+.++|+.++. +..++...+.+ +||.+.+|..+..++++||+++ ++++++++++++|+++
T Consensus 290 ~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~-~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 290 FG-VEDAKLRSMTTIVANTTM-------LPGEINKILEP-FDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp ES-SSCGGGBCSSEEEEEESS-------CHHHHHHHHGG-GTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ec-cCChhhcCCceEEEecCC-------CHHHHHHHHHH-CCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 43 32 235567777753 46677777655 4999999977666889999997 6889999999998875
Q ss_pred H
Q 014603 415 Y 415 (422)
Q Consensus 415 ~ 415 (422)
+
T Consensus 361 ~ 361 (362)
T 3ffr_A 361 I 361 (362)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=258.28 Aligned_cols=337 Identities=17% Similarity=0.150 Sum_probs=232.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
++..++||+.+.+....+ +++|.+.+++.+++..... ..| +.....++++.+++++ +++++++++++|++
T Consensus 43 ~g~~~ld~~~~~~~~~~g-~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~------~~~~~~v~~~~gg~ 114 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLG-HGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL------PPELNRVFPVNSGT 114 (395)
T ss_dssp TSCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS------CTTEEEEEEESSHH
T ss_pred CCCEEEEccCccccccCC-CCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc------CCCcCEEEEcCcHH
Confidence 467789998875421111 2788999999998865321 123 2233456666666665 34678999999999
Q ss_pred HHHHHHHHHhc--CCCCEEEecCCCccchH-HHHhhCCCeEEE---eeccCCCC--cccCHHHHHHhhcCCceEEEEeCC
Q 014603 121 QAIEVILTVLA--RPGANILLPRPGFPYYE-ARATHSHLEVRH---FDLLPAKG--WEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 121 ~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~-~~~~~~g~~~~~---~~~~~~~~--~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
+|++.+++++. .+||.|++.+|+|++.. ......|.+.+. .|+..+.. ...|++.|++.+++++++++++.+
T Consensus 115 ~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 194 (395)
T 1vef_A 115 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPV 194 (395)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCc
Confidence 99999998764 57899999999997643 455555654211 11110000 014899999999877777765555
Q ss_pred CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
+||||.++ +.+++++|.++|+++|+++|+||+|+++.+.|... .+...+...+++ |+||++++ |+|+||++++
T Consensus 195 ~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~-~~~~~~~~~d~~---s~sK~~~~-g~~~G~~~~~- 268 (395)
T 1vef_A 195 QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDIL---TLAKALGG-GVPLGVAVMR- 268 (395)
T ss_dssp ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEE---EECGGGGT-TSSCEEEEEE-
T ss_pred cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh-HhhhcCCCCCEE---EEcccccC-CCceEEEEeh-
Confidence 78999864 68889999999999999999999999755444321 122222222222 78999876 8999999987
Q ss_pred CCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCce
Q 014603 272 PNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP-KKPEGSM 349 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~ 349 (422)
+++++.+.... ..+.+++++.+.++.++++...+ .+..++++++++.+.+.|++++. ... ..+..|.
T Consensus 269 -------~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~ 337 (395)
T 1vef_A 269 -------EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS-PKIREVRGMGL 337 (395)
T ss_dssp -------HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC-TTEEEEEEETT
T ss_pred -------HHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc-CceEEEEEEEE
Confidence 35666555422 22345678888888888875322 34677888899999999988732 211 1234567
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
++|+.++. +..++...+.+++||.+.|+. .+++||+++ ++++++++++++|++++
T Consensus 338 ~~~~~~~~-------~~~~l~~~l~~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 338 MVGLELKE-------KAAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEEESS-------CSHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEcC-------hHHHHHHHHHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 88888863 245677777536799999863 689999886 78999999999998875
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=258.73 Aligned_cols=353 Identities=11% Similarity=0.045 Sum_probs=235.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.++||..|......+ +.+|++.+++.+++.+... .|....+..+.++.+++++.+.+ +.+.++|++++|+++
T Consensus 47 ~~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~~~ggse 122 (459)
T 4a6r_A 47 SEGNKIIDGMAGLWCVNVG-YGRKDFAEAARRQMEELPF-YNTFFKTTHPAVVELSSLLAEVT--PAGFDRVFYTNSGSE 122 (459)
T ss_dssp TTCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHHHCSC-CCTTSSSCCHHHHHHHHHHHHHS--CTTCCEEEEESSHHH
T ss_pred CCCCEEEECCCchhcccCC-CCCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHHhC--CCCCCEEEEeCchHH
Confidence 3588899999885442222 3479999999999876321 33333344566666777666654 346679999999999
Q ss_pred HHHHHHHHhcC--------CCCEEEecCCCccchHHHHhhCCC-------------eEEEeeccC--C-CCcccC-----
Q 014603 122 AIEVILTVLAR--------PGANILLPRPGFPYYEARATHSHL-------------EVRHFDLLP--A-KGWEVD----- 172 (422)
Q Consensus 122 a~~~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~--~-~~~~~d----- 172 (422)
|++.+++.++. +++.|++.+|+|+++...+...+. ++..++... . +++ .|
T Consensus 123 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~ 201 (459)
T 4a6r_A 123 SVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFG 201 (459)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHH
Confidence 99999998875 468999999999988655544321 223333211 0 111 24
Q ss_pred ---HHHHHHhhcC---CceEEEEeCCC-CCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 173 ---LDAVEALADE---NTVALVIINPG-NPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 173 ---~~~l~~~~~~---~~~~i~i~~p~-nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
++.|++.+.. +..++++++|. +++|. .++.+++++|.++|++||+++|+||+|.++.++|... .....+..
T Consensus 202 ~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~-~~~~~~~~ 280 (459)
T 4a6r_A 202 VVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF-GHQHFGFQ 280 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-HHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcCCC
Confidence 6788887752 45567777774 45555 5688999999999999999999999999887766422 22233333
Q ss_pred CCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH---hhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK---SFL-NISSDPATFIQGAVPQILEKTE-EEFFSKIT 319 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~ 319 (422)
+++ .++||.++.+|+|+|+++++ +++++.+. ... ..+.+.++++++++.++|+... +..+++.+
T Consensus 281 pdi---~t~sK~l~gg~~~lg~v~~~--------~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 349 (459)
T 4a6r_A 281 PDL---FTAAKGLSSGYLPIGAVFVG--------KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVK 349 (459)
T ss_dssp CSE---EEECGGGGTTSSCCEEEEEC--------HHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCe---eehhhhhcCCCCCccceeeC--------HHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHH
Confidence 333 35789976666999999986 57888876 222 3345778899999999998533 23344444
Q ss_pred -HHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc--C----CCCHHHHHHHHHHhcCeEEecCCCCCCCCe
Q 014603 320 -DILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE--G----INSDMEFALKLAKEESVIVLPGITVGLKDW 392 (422)
Q Consensus 320 -~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 392 (422)
+.....++.+.+.|++++.+. . .+..|.++++.+...... . .....++...+ .++||.+.|+. ++
T Consensus 350 ~~~~~~~~~~l~~~l~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~g-----~~ 421 (459)
T 4a6r_A 350 DDIGPYMQKRWRETFSRFEHVD-D-VRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIF-FRNNLIMRACG-----DH 421 (459)
T ss_dssp HTHHHHHHHHHHHHHTTCTTEE-E-EEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHH-HHTTEECEEET-----TE
T ss_pred HHHHHHHHHHHHHHHhcCCCeE-E-EEEEEEEEEEEEecCccccccccchHHHHHHHHHHH-HHCCeEEecCC-----CE
Confidence 444455555545566665444 2 233466777776532100 0 00034555555 45699999863 78
Q ss_pred EEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 393 LRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+||+++ ++++++++++++|++++++..
T Consensus 422 iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 422 IVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999975 799999999999999998764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=257.62 Aligned_cols=325 Identities=15% Similarity=0.138 Sum_probs=223.5
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPR 141 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~ 141 (422)
+.++.+.+++. .. ...|.+..+..++|++++++++ .+++++++||++|++.++.+++++|| +++.
T Consensus 55 ~~~~~~~~a~~----~~-~~~y~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~ 119 (456)
T 2ez2_A 55 AMSDKQWAGMM----MG-DEAYAGSENFYHLERTVQELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAG 119 (456)
T ss_dssp CCCHHHHHHHT----TC-CCCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEE
T ss_pred cCCHHHHHHhh----cc-hhhcccChhHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCCC--Eecc
Confidence 44577777665 21 2367777788999999999993 34899999999999999999999999 7888
Q ss_pred CCc-cchHHHHhhCCCeEEEeeccCC----C----CcccCHHHHHHhhcCCc----eEEEEeCCCC-CcccccCHHHHHH
Q 014603 142 PGF-PYYEARATHSHLEVRHFDLLPA----K----GWEVDLDAVEALADENT----VALVIINPGN-PCGNVYTYQHLQK 207 (422)
Q Consensus 142 ~~~-~~~~~~~~~~g~~~~~~~~~~~----~----~~~~d~~~l~~~~~~~~----~~i~i~~p~n-ptG~~~~~~~l~~ 207 (422)
|+| ..+...+...|.+++.+++++. . ++.+|++.|++.+++++ +++++++|+| |||.+++.+++++
T Consensus 120 ~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~ 199 (456)
T 2ez2_A 120 NMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRA 199 (456)
T ss_dssp SSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred ccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHH
Confidence 999 6667888889999998887631 2 36789999999887654 7888999998 9999999999999
Q ss_pred HHHHHHHcCcEEEEcccccc----------cccCCCCCCCcc-ccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcc
Q 014603 208 IAETAKKLGIMVIADEVYDH----------LAFGNTPFVPMG-VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 276 (422)
Q Consensus 208 i~~~~~~~~~~li~D~~~~~----------~~~~~~~~~~~~-~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~ 276 (422)
|+++|++||+++|+||+|+. +.+.+....++. ..+...+++++ |++|. +++| +.||+++++
T Consensus 200 i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~-S~kk~-~~~~-~gG~~~~~~----- 271 (456)
T 2ez2_A 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM-SGKKD-CLVN-IGGFLCMND----- 271 (456)
T ss_dssp HHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEE-ETTTT-TCCS-SCEEEEESC-----
T ss_pred HHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEE-eCccc-CCCC-ceeEEEECC-----
Confidence 99999999999999999986 345443211000 01111234444 78887 4566 789998843
Q ss_pred cchhHHHHHHhhhhh------ccCcchHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce
Q 014603 277 QDSGIVDSIKSFLNI------SSDPATFIQGA-VPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM 349 (422)
Q Consensus 277 ~~~~~~~~~~~~~~~------~~~~~~~~~~a-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 349 (422)
+++++.+...... ..+.+.....+ +...++... ++..++.+++.+.+.+.|++. ++. +..|.+++
T Consensus 272 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p~~~~ 343 (456)
T 2ez2_A 272 --DEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKLKAA-GVP-IVEPVGGH 343 (456)
T ss_dssp --HHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHT-TCC-BCSSCCSS
T ss_pred --HHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhcC-CCc-cccCCCce
Confidence 4677766554321 11222222222 222222111 344455556667778888775 666 33677788
Q ss_pred EEEEecCcccccCCCCHHHH-----HHHHHHhcCeEEec-CCCC------------CCCCeEEEEec---cChHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEF-----ALKLAKEESVIVLP-GITV------------GLKDWLRITFA---VEPSALEDGL 408 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~gi~v~~-g~~~------------~~~~~iRis~~---~~~~~l~~~~ 408 (422)
++|+.+.... .+ .+..++ ...+++++||.+.+ |..| ...+++|++++ ++++++++++
T Consensus 344 ~~~~~~~~~~-~~-~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~ 421 (456)
T 2ez2_A 344 AVFLDARRFC-EH-LTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVA 421 (456)
T ss_dssp EEEEEHHHHT-TT-SCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHH
T ss_pred EEEEEhHHhc-CC-CChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHH
Confidence 9998863200 00 022233 55554677998765 4322 11478999998 6899999999
Q ss_pred HHHHHHHHHhc
Q 014603 409 GRMKAFYDRHA 419 (422)
Q Consensus 409 ~~l~~~~~~~~ 419 (422)
++|++++++..
T Consensus 422 ~~l~~~l~~~~ 432 (456)
T 2ez2_A 422 DGIIKLYQHKE 432 (456)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHhhhh
Confidence 99999987653
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=258.06 Aligned_cols=351 Identities=12% Similarity=0.080 Sum_probs=227.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|.+....+ +.+|++.+++.+++.+... ....+..+.+..+++++.+.++ ...+ |++|+||++|
T Consensus 47 ~g~~~lD~~~~~~~~~lG-~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~~--~~~~-v~~~~ggseA 119 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSG-YGRKELAEAAYKQLQTLSY---FPMSQSHEPAIKLAEKLNEWLG--GEYV-IFFSNSGSEA 119 (452)
T ss_dssp TCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHTTCCC---CCTTSEEHHHHHHHHHHHHHHT--SCEE-EEEESSHHHH
T ss_pred CCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhcCC---cccccCCHHHHHHHHHHHHhCC--CCce-EEEeCchHHH
Confidence 578899999885443233 3579999999999876322 1122333445555555544333 3444 9999999999
Q ss_pred HHHHHHHhc-----C---CCCEEEecCCCccchHHHHhhCCCe-------------EEEeeccCCCCccc-C--------
Q 014603 123 IEVILTVLA-----R---PGANILLPRPGFPYYEARATHSHLE-------------VRHFDLLPAKGWEV-D-------- 172 (422)
Q Consensus 123 ~~~~~~~l~-----~---~gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~-d-------- 172 (422)
++.+++.++ . ++++|++.+|+|+++...+...+.. ...++......... |
T Consensus 120 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (452)
T 3n5m_A 120 NETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVE 199 (452)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHH
Confidence 999999876 4 6799999999999876555544321 22232211000000 1
Q ss_pred -HHHHHHhhc----CCceEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 173 -LDAVEALAD----ENTVALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 173 -~~~l~~~~~----~~~~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
++.|++.++ +++++++++.+ +| +|.++ +.+++++|.++|++||+++|+||+|.++.+.|... .....+..+
T Consensus 200 ~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~-~~~~~~~~~ 277 (452)
T 3n5m_A 200 CVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAF-GFMNYDVKP 277 (452)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccc-hhhhcCCCC
Confidence 788888876 34455555555 79 99765 88889999999999999999999999887766432 223333222
Q ss_pred CeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHh----h---hhhccCcchHHHHHHHHHHhhch-HHHHH
Q 014603 246 PVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKS----F---LNISSDPATFIQGAVPQILEKTE-EEFFS 316 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~a~~~~l~~~~-~~~~~ 316 (422)
+ +.++||.+++ | +|+||++++ +++++.+.. . ...+.+.++++++++.++|+... +..++
T Consensus 278 d---i~t~sK~l~~-G~~~ig~~~~~--------~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 345 (452)
T 3n5m_A 278 D---IITMAKGITS-AYLPLSATAVK--------REIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIE 345 (452)
T ss_dssp S---EEEECGGGGT-TSSCCEEEEEE--------HHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred C---EEeecccccC-CCcceEEEEEC--------HHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 2 3367899865 9 999999986 467777643 1 12345778899999999887533 22334
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccC--C--CCHHHHHHHHHHhcCeEEecCCCCCC--C
Q 014603 317 KITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--I--NSDMEFALKLAKEESVIVLPGITVGL--K 390 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~gi~v~~g~~~~~--~ 390 (422)
+..+..+..++.+.+.++++|.+. . .+..|.++++.+....... . ....++...+ .++||.+.|+..|.. +
T Consensus 346 ~~~~~~~~l~~~L~~~~~~~~~~~-~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~~~~ 422 (452)
T 3n5m_A 346 RSAQMGSLLLEQLKEEIGEHPLVG-D-IRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC-KEKGLIIGRNGMTTAGYN 422 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEE-E-EEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH-HHTTEECEECTTSSTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeE-E-EEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH-HHCCcEEeecCcccCCCC
Confidence 444444444444444445555443 2 2334566676663211000 0 0013455554 566999999876533 5
Q ss_pred CeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 391 DWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 391 ~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
+++||+++ ++++++++++++|++++++
T Consensus 423 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 423 NILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 89999866 7899999999999998864
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=256.64 Aligned_cols=356 Identities=14% Similarity=0.026 Sum_probs=238.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|.+.+++.+++.+... .|....+..++++.+++++.+.. +.+.++|++++|+++|
T Consensus 49 ~G~~~lD~~~~~~~~~lG-~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~~~gGseA 124 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVG-YGRQKIADAIATQAKNLAY-YHAYVGHGTEASITLAKMIIDRA--PKGMSRVYFGLSGSDA 124 (460)
T ss_dssp TCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHHHHSC-CCCCTTCCCHHHHHHHHHHHHHS--CTTEEEEEEESSHHHH
T ss_pred CCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHhhC--CCCcCEEEEeCchHHH
Confidence 688899999884332122 3579999999998875321 33333344566666666666543 3466799999999999
Q ss_pred HHHHHHHhcC--------CCCEEEecCCCccchHHHHhhCCC-------------eEEEeeccC---CCCcccC------
Q 014603 123 IEVILTVLAR--------PGANILLPRPGFPYYEARATHSHL-------------EVRHFDLLP---AKGWEVD------ 172 (422)
Q Consensus 123 ~~~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~---~~~~~~d------ 172 (422)
++.++++++. +++.|++.+++|+++...+...+. .+..++... .++.+.+
T Consensus 125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 204 (460)
T 3gju_A 125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQ 204 (460)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHH
Confidence 9999998863 458999999999987655443321 234444211 0111223
Q ss_pred --HHHHHHhhcC---CceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 173 --LDAVEALADE---NTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 173 --~~~l~~~~~~---~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
++.|++.+.+ +..++++++| +|++|. +++.+++++|.++|++||+++|+||+|+++.+.|... .....+..+
T Consensus 205 ~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~p 283 (460)
T 3gju_A 205 HCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMF-GSDHYGIKP 283 (460)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-hHhhcCCCC
Confidence 5778887752 3445556666 666776 6788889999999999999999999999877666422 222233332
Q ss_pred CeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-------h-hhccCcchHHHHHHHHHHhhch-HHHHH
Q 014603 246 PVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-------L-NISSDPATFIQGAVPQILEKTE-EEFFS 316 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~ 316 (422)
+ +.++||+++..++|+||++++ +++++.+... . ..+.+.++++++++.++|+... +..++
T Consensus 284 d---i~t~sK~l~gG~~~lg~v~~~--------~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 352 (460)
T 3gju_A 284 D---LITIAKGLTSAYAPLSGVIVA--------DRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVT 352 (460)
T ss_dssp S---EEEECGGGTTTSSCCEEEEEE--------HHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHH
T ss_pred C---eeeeehhhcCCCCCeEEEEEC--------HHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 3 336789964423899999987 5788887532 1 2345778899999999998543 34456
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc--C----CCCHHHHHHHHHHhcCeEEecCCCCCCC
Q 014603 317 KITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE--G----INSDMEFALKLAKEESVIVLPGITVGLK 390 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 390 (422)
+.++..+..++.+.+.+++++.+. . .+..|.++++.+...... . .....++...+ .++||.+.|+. ..
T Consensus 353 ~~~~~~~~~~~~l~~~l~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~---~~ 426 (460)
T 3gju_A 353 NAGETGAYFRAELAKAVGGHKNVG-E-VRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATAL-AASGVIGRAMP---QG 426 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEE-E-EEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHH-HHTTEECEECS---SS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeE-E-EeeeeEEEEEEEccCccccccccchHHHHHHHHHHH-HHCCeEEecCC---CC
Confidence 666666666777777777776554 2 233466777776532100 0 00134455555 55699999975 35
Q ss_pred CeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 391 DWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 391 ~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+++||+++ .+++++++++++|++++++..+
T Consensus 427 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 427 DILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999965 7899999999999999988754
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=253.09 Aligned_cols=335 Identities=14% Similarity=0.090 Sum_probs=236.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCC---CCHH--HHH-----HHHHHHhhcCCCCCCCCCEE
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTV---GILP--ARR-----AIADYLNRDLPYKLSPDDVY 114 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---g~~~--lr~-----~ia~~l~~~~~~~~~~~~i~ 114 (422)
..+|+|..|.+. .+|.+.+++.+++.+.....|+... |.+. +++ .+++++ +.+++.|+
T Consensus 23 ~~~i~~~~~~~~------~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~------g~~~~~i~ 90 (407)
T 2dkj_A 23 REGLELIASENF------VSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALF------GAAWANVQ 90 (407)
T ss_dssp HTSEECCTTCCC------CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH------TCSEEECC
T ss_pred hcceeeccCCCC------CCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHh------CCCcceEE
Confidence 578999988733 2799999999988643334565422 4342 333 555665 33444455
Q ss_pred EecCHHHHHHHHHHHhcCCCCEEEecCCCccchH---HHHhhCCCeEEEeeccC-CCCcccCHHHHHHhhcC-CceEEEE
Q 014603 115 LTLGCTQAIEVILTVLARPGANILLPRPGFPYYE---ARATHSHLEVRHFDLLP-AKGWEVDLDAVEALADE-NTVALVI 189 (422)
Q Consensus 115 ~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~~~-~~~~i~i 189 (422)
+++ |++|+..++.+++++||+|+++.|+|+++. ..+...|..+..++... .+++.+|++.+++.+++ +++++++
T Consensus 91 ~~s-Gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~ 169 (407)
T 2dkj_A 91 PHS-GSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVA 169 (407)
T ss_dssp CSS-HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred ecc-hHHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEE
Confidence 555 566999999999999999999999998873 44444555333444321 23567899999998874 7888888
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH-LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
++|+|| ... ++++|.++|+++|+++|+|++|+. +.+.+.....+ . ...+++.|+||++ +|+|+||++
T Consensus 170 ~~p~~~--~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~---~--~~di~~~s~sK~l--~g~~~G~~~ 237 (407)
T 2dkj_A 170 GASAYP--RFW---DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPL---P--YAHVVTSTTHKTL--RGPRGGLIL 237 (407)
T ss_dssp CCSSCC--SCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCT---T--TCSEEEEESSGGG--CCCSCEEEE
T ss_pred eccccC--CCC---CHHHHHHHHHHcCCEEEEEccccccccccCccCCcc---c--cccEEEEeccccC--CCCCceEEE
Confidence 899997 443 488999999999999999999987 44444322111 1 1348899999964 578899999
Q ss_pred eeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 346 (422)
+++ +++.+.+...... .++++.....++.++++.....++++..++++++++++.+.|+++ ++.+...+.
T Consensus 238 ~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 309 (407)
T 2dkj_A 238 SND-------PELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGT 309 (407)
T ss_dssp ESC-------HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred ECC-------HHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCC
Confidence 863 3677777665422 234455445566667765334677889999999999999999988 776332245
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC------CCCCeEEEEec------cChHHHHHHHHHHHHH
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV------GLKDWLRITFA------VEPSALEDGLGRMKAF 414 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~------~~~~~iRis~~------~~~~~l~~~~~~l~~~ 414 (422)
.+.++|+.++... .+..++...+ .++||.+.+|..+ ..++++|++++ .+++++++++++|+++
T Consensus 310 ~~~~~~~~~~~~~----~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 310 DNHLFLVDLRPKG----LTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp SSSEEEEECGGGT----CCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred CceEEEEECcccC----CCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 6888999886421 1455666655 6779999998753 23578999995 6899999999999999
Q ss_pred HHH
Q 014603 415 YDR 417 (422)
Q Consensus 415 ~~~ 417 (422)
+++
T Consensus 385 ~~~ 387 (407)
T 2dkj_A 385 LLE 387 (407)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=254.90 Aligned_cols=335 Identities=13% Similarity=0.106 Sum_probs=224.6
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCC---------CCHHHHHHHHHHHhhcCCCCCCCCCEE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTV---------GILPARRAIADYLNRDLPYKLSPDDVY 114 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---------g~~~lr~~ia~~l~~~~~~~~~~~~i~ 114 (422)
..+.++|+.+.+. ++++.+.+++.+.+.. ...|+... ...++|+++++++ ++++++|+
T Consensus 16 ~~~~~~Ld~~~~~-----~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~ 82 (432)
T 3a9z_A 16 PNRKVYMDYNATT-----PLEPEVIQAVTEAMKE--AWGNPSSSYVAGRKAKDIINTARASLAKMI------GGKPQDII 82 (432)
T ss_dssp --CCEECBTTTCC-----CCCHHHHHHHHHHHHH--CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEE
T ss_pred CCCcEEeeCCccC-----CCCHHHHHHHHHHHHH--hcCCCccCcHHHHHHHHHHHHHHHHHHHHc------CCCcCeEE
Confidence 4567889888744 6678999999998865 22333211 2368999999998 45678999
Q ss_pred EecCHHHHHHHHHHHhc--------CCCCEEEecCCCccch-----------------HHHHhhCCCeEEEeeccCCCCc
Q 014603 115 LTLGCTQAIEVILTVLA--------RPGANILLPRPGFPYY-----------------EARATHSHLEVRHFDLLPAKGW 169 (422)
Q Consensus 115 ~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~~ 169 (422)
+|+|++++++.++.+++ ++||+|+++.|+|+.+ ...++..|.+++.++.++ .++
T Consensus 83 ~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~-~~~ 161 (432)
T 3a9z_A 83 FTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSK-VNG 161 (432)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCT-TTS
T ss_pred EeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCc-ccC
Confidence 99999999999999886 5899999999999765 334455789999998764 234
Q ss_pred ccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC----------cEEEEcccccccccCCCCCCCcc
Q 014603 170 EVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG----------IMVIADEVYDHLAFGNTPFVPMG 239 (422)
Q Consensus 170 ~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~----------~~li~D~~~~~~~~~~~~~~~~~ 239 (422)
.+|++.|++.++++++++++++|+||||.+++. ++|.++|+++| +++|+|++|+.. ....++.
T Consensus 162 ~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~---~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~----~~~~~~~ 234 (432)
T 3a9z_A 162 QVEVEDILAAVRPTTCLVTIMLANNETGVIMPI---SEISRRIKALNQIRAASGLPRVLVHTDAAQALG----KRRVDVE 234 (432)
T ss_dssp SCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCH---HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTT----TSCCCHH
T ss_pred CcCHHHHHHhccCCceEEEEECcccCcccccCH---HHHHHHHHhcCcccccccCCceEEEEEchhhhC----CcccChh
Confidence 689999999998889999999999999999874 56788888999 999999999752 2222333
Q ss_pred ccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh--------hhhhccCcchHHHHHHHHHHhhch
Q 014603 240 VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS--------FLNISSDPATFIQGAVPQILEKTE 311 (422)
Q Consensus 240 ~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~~l~~~~ 311 (422)
....+ +++.|+||++ |+|+||+++++... ...+.. .....++++...+.++.++++..
T Consensus 235 ~~~~d---~~~~s~~K~~---g~~~G~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~- 300 (432)
T 3a9z_A 235 DLGVD---FLTIVGHKFY---GPRIGALYVRGVGK-------LTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV- 300 (432)
T ss_dssp HHCCS---EEEEEGGGTT---CCSCEEEEETTBTT-------TBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-
T ss_pred hcCCC---EEEEehhHhc---CCcceEEEEccccc-------cCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-
Confidence 33332 6689999986 35699999974210 111111 11123466777787877777743
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCC-----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC
Q 014603 312 EEFFSKITDILRETADICCDRLKEIPCITCP-KKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 385 (422)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 385 (422)
+.++++..++++++++++.+.|++++++.+. ..| ..+...++.++... .+..++...+ .++.+.+|.
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l---~~i~~~~G~ 373 (432)
T 3a9z_A 301 SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ----LRGYMVLAQC---QTLLASVGA 373 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT----CCHHHHHHHC---SSEECBSSC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC----CcHHHHHHHh---cCeEEeccc
Confidence 3467888899999999999999886454311 122 12334445554310 1344444432 377777765
Q ss_pred CC---------------CC-----CCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 386 TV---------------GL-----KDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 386 ~~---------------~~-----~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.| +. .+++||+++ ++++++++++++|+++++++++
T Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 374 SCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp GGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 43 21 378999998 4899999999999999887643
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=252.09 Aligned_cols=326 Identities=17% Similarity=0.156 Sum_probs=241.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
.+++||+.|.+. + ++.+.+++.+++... .|.+..+..++|++++++++ . +++++++||++|+.
T Consensus 30 ~~~id~~~~~~~----~--~~~v~~a~~~~~~~~---~y~~~~~~~~l~~~la~~~~------~--~~~v~~~~Gt~a~~ 92 (399)
T 2oga_A 30 VPFLDLKAAYEE----L--RAETDAAIARVLDSG---RYLLGPELEGFEAEFAAYCE------T--DHAVGVNSGMDALQ 92 (399)
T ss_dssp BCSCCHHHHHHH----T--HHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHTT------S--SEEEEESCHHHHHH
T ss_pred CcccccCcCCCC----C--CHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHHC------C--CeEEEecCHHHHHH
Confidence 578999988744 2 389999999988652 56665678899999999983 2 36788888999999
Q ss_pred HHHHHh-cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 125 VILTVL-ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
.++.++ +++||+|+++.|+|+++...++..|.+++.++.++ +++.+|++.|++.+++++++++ ++||||...+
T Consensus 93 ~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~-- 166 (399)
T 2oga_A 93 LALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE-DHPTLDPLLVEKAITPRTRALL---PVHLYGHPAD-- 166 (399)
T ss_dssp HHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS-SSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC--
T ss_pred HHHHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCC-CCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC--
Confidence 999999 89999999999999999999999999999998864 3467899999999987777665 5789999854
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccc-cCCCCCCCccccCCCCCeEEEecC--ccccCCCCceeEEEEeeCCCCcccchh
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~--sK~~~~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+++|.++|+++|+++|+|++|+.+. +++. .+..+ . .+++.|+ ||.++.+| |+|++++++ ++
T Consensus 167 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~~~-~---di~~~S~~~sK~~~~~G-~~g~~~~~~-------~~ 230 (399)
T 2oga_A 167 -MDALRELADRHGLHIVEDAAQAHGARYRGR---RIGAG-S---SVAAFSFYPGKNLGCFG-DGGAVVTGD-------PE 230 (399)
T ss_dssp -HHHHHHHHHHHTCEECEECTTCTTCEETTE---ETTCT-T---CEEEEECCTTSSSCCSS-CCEEEEESC-------HH
T ss_pred -HHHHHHHHHHcCCEEEEECcccccCccCCe---ecccc-c---CEEEEeCCCCccCCcCC-ceEEEEeCC-------HH
Confidence 7888999999999999999998642 3222 11111 1 2888888 79988878 999999853 46
Q ss_pred HHHHHHhhhhh-------------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 281 IVDSIKSFLNI-------------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 281 ~~~~~~~~~~~-------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+.+++...... ....+.+.++++.+.++. +++..++.+++.+.+.+.|++++++.+...|..
T Consensus 231 ~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 305 (399)
T 2oga_A 231 LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-----LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPD 305 (399)
T ss_dssp HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTT
T ss_pred HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCCccccCCCCC
Confidence 77776654321 113456666666666654 344566677778889999998888774434555
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC-----------CC------------CCeEEEEec--cChH
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-----------GL------------KDWLRITFA--VEPS 402 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-----------~~------------~~~iRis~~--~~~~ 402 (422)
+.++|+.++... .+..++...| .++||.+.++... +. .+++||+++ ++++
T Consensus 306 ~~~~~~~~~~~~----~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~e 380 (399)
T 2oga_A 306 TDPVWHLFTVRT----ERRDELRSHL-DARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERP 380 (399)
T ss_dssp EECCCSSEEEEC----SSHHHHHHHH-HHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHH
T ss_pred CcceeEEEEEEC----CCHHHHHHHH-HHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHH
Confidence 555553332110 1456666666 5579999875421 00 257999997 6899
Q ss_pred HHHHHHHHHHHHHHHhc
Q 014603 403 ALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 403 ~l~~~~~~l~~~~~~~~ 419 (422)
+++++++.|+++++++.
T Consensus 381 di~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 381 QALRVIDAVREWAERVD 397 (399)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=259.15 Aligned_cols=353 Identities=17% Similarity=0.092 Sum_probs=230.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|.+....+ +.+|.+.+++.+++... ..|....+..+.+..+++++.+..+. ...+++++|+||++|
T Consensus 59 ~g~~ylD~~~~~~~~~lG-h~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~~~sGseA 134 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVG-NSAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSALFNSGSEA 134 (451)
T ss_dssp TSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEEESSHHHH
T ss_pred CCCEEEEcCCCccccccC-CCCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEEeCcHHHH
Confidence 477789999875442222 34899999999998763 23444344556777777777665441 235789999999999
Q ss_pred HHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCC--------------eEEEeeccCC--------CCcc---cCHHH
Q 014603 123 IEVILTVLAR--PGANILLPRPGFPYYEARATHSHL--------------EVRHFDLLPA--------KGWE---VDLDA 175 (422)
Q Consensus 123 ~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~--------~~~~---~d~~~ 175 (422)
++.+++.+.. .++.|++.+++|+++...+...+. .+..++.... +..+ .+++.
T Consensus 135 ~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 214 (451)
T 3oks_A 135 VENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKR 214 (451)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHH
Confidence 9999987653 448999999999987655543321 3445544210 0000 12333
Q ss_pred HHHhh----cCCceEEEEeCCCCCcc--cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 176 VEALA----DENTVALVIINPGNPCG--NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 176 l~~~~----~~~~~~i~i~~p~nptG--~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
+++.+ .+++.++++++|.|++| ..++.+.+++|.++|++||+++|+||+|.++.++|.. ..+..++..++
T Consensus 215 ~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~-~~~~~~~~~pd--- 290 (451)
T 3oks_A 215 AITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM-FACEHEGIDPD--- 290 (451)
T ss_dssp HHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS-SGGGGGTCCCS---
T ss_pred HHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc-hhhhhcCCCCC---
Confidence 33333 34667788888866655 3457777999999999999999999999987766642 22333333223
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETAD 327 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~ 327 (422)
+.|+||.++. |+|+||++++ +++++.+.... ..+.+.++++++++.++|+...+ ...++.++.....++
T Consensus 291 i~t~sK~l~~-G~~iG~v~~~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 361 (451)
T 3oks_A 291 LIVTAKGIAG-GLPLSAVTGR--------AEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKD 361 (451)
T ss_dssp EEEECGGGGT-TSSCEEEEEE--------HHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred eeeehhhhhC-CcceEEEEEC--------HHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3378999855 9999999986 46766665433 33457788999999999875332 233444444444444
Q ss_pred HHHHHhhcCCCCCCCCCCCCceEEEEecCcccc--cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHH
Q 014603 328 ICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL--EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSA 403 (422)
Q Consensus 328 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~ 403 (422)
.+.+.++++|.+. . .+..|.++++.+..... +......++...+ .++||.+.|+..+ .+++|++++ .++++
T Consensus 362 ~L~~~~~~~~~~~-~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~--~~~iRi~~~~~~t~e~ 436 (451)
T 3oks_A 362 RLGRLQAEDDRIG-D-VRGRGAMIAMELVKAGTTEPDADLTKALCAGA-HAAGVIVLSCGTY--GNVVRFLPPLSIGDDL 436 (451)
T ss_dssp HHHHHHHHCTTEE-E-EEEETTEEEEEEBSTTSCCBCHHHHHHHHHHH-HHTTEECEEECTT--SCEEEECCCTTCCHHH
T ss_pred HHHHHHhhCCCeE-E-EEEeeEEEEEEEecCccCCCCHHHHHHHHHHH-HhCCcEEecCCCC--CCEEEEECCCCCCHHH
Confidence 4544445555443 2 23346688887732000 0000234455554 5669999997654 378999876 68999
Q ss_pred HHHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYDR 417 (422)
Q Consensus 404 l~~~~~~l~~~~~~ 417 (422)
+++++++|++++++
T Consensus 437 i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 437 LNEGLDVLEEVLRG 450 (451)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=258.06 Aligned_cols=346 Identities=14% Similarity=0.058 Sum_probs=225.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..+......+ ..+|.+.+++.+++.......|+ .....++++++++++ + ++++|++++||++|
T Consensus 53 ~g~~ylD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~l~~~la~~~------~-~~~~v~~~~sGsea 123 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITG-HAHPHITKAITTAAENGVLYGTP-TALEVKFAKMLKEAM------P-ALDKVRFVNSGTEA 123 (434)
T ss_dssp TCCEEEECCGGGTTCSSC-BTCHHHHHHHHHHHHHCSCCSSC-CHHHHHHHHHHHHHC------T-TCSEEEEESSHHHH
T ss_pred CCCEEEECCCchhccccC-CCCHHHHHHHHHHHHhCcCCCCC-CHHHHHHHHHHHHhC------C-CCCEEEEeCchHHH
Confidence 588899999887543222 25899999999998764333443 334567777777765 2 57899999999999
Q ss_pred HHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCC-eEEEeeccCCCCc--------c----cCHHHHHHhhcC--Cce
Q 014603 123 IEVILTVLAR--PGANILLPRPGFPYYEARATHSHL-EVRHFDLLPAKGW--------E----VDLDAVEALADE--NTV 185 (422)
Q Consensus 123 ~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~--------~----~d~~~l~~~~~~--~~~ 185 (422)
++.+++.+.. ++++|++.+|+|+++...+...+. ...........+. . -|++.|++.+++ ...
T Consensus 124 ~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 203 (434)
T 3l44_A 124 VMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEV 203 (434)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCE
Confidence 9999987754 678999999999987654443322 1111111000000 0 178899888763 345
Q ss_pred EEEEeCCC-CCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 186 ALVIINPG-NPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 186 ~i~i~~p~-nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++++++|. |++|.+. +.+++++|.++|++||+++|+||+|.++ +.|... .+..++...+ +.|+||.++ +|+|
T Consensus 204 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~-~~~~~~~~~d---i~t~sK~~~-~G~~ 277 (434)
T 3l44_A 204 AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGG-AQDLLGVTPD---LTALGKVIG-GGLP 277 (434)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSC-HHHHHTCCCS---EEEEEGGGG-TTSS
T ss_pred EEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccH-HHHHcCCCCC---eeehhhhhc-CCcC
Confidence 56666674 5566554 8888999999999999999999999987 554321 1222222222 447889986 7999
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE---- 335 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---- 335 (422)
+||++++ +++++.+... ...+.++++++++++.++|+...+ ++..++++++.+.+++.|++
T Consensus 278 iG~~~~~--------~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 346 (434)
T 3l44_A 278 IGAYGGK--------KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAK 346 (434)
T ss_dssp CEEEEEC--------HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEc--------HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999885 4677666542 223457788999999888875321 23334444444444444443
Q ss_pred CCCCCCCCCCCCceEEEEecCccccc--------CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLE--------GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDG 407 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~ 407 (422)
++.+. . .+..|.++++.+...... ......++...+ .++||.+.|+. .+.+|+++.+++++++++
T Consensus 347 ~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~----~~~~rl~~~~t~e~i~~~ 419 (434)
T 3l44_A 347 HNIDI-T-LNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLM-LQEGVNLAPSK----YEAWFLTTEHTKEDIEYT 419 (434)
T ss_dssp TTCCE-E-EEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHH-HHTTEECCSST----TCCEECCTTCCHHHHHHH
T ss_pred CCCCE-E-EEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHH-HHCCeEEeecC----CCcEEEecccCHHHHHHH
Confidence 43222 2 234466777766321100 000123455555 55699999875 356899877899999999
Q ss_pred HHHHHHHHHHhccc
Q 014603 408 LGRMKAFYDRHAKK 421 (422)
Q Consensus 408 ~~~l~~~~~~~~~~ 421 (422)
+++|+++++++.++
T Consensus 420 l~~l~~~l~~~~~~ 433 (434)
T 3l44_A 420 IEAVGRAFAALADN 433 (434)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887553
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=251.90 Aligned_cols=329 Identities=15% Similarity=0.132 Sum_probs=237.0
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+..+.|+-|. .++++++.+++.+.... .|.+. ....++++.++++++... ++++++|++|+|++++
T Consensus 4 ~~~~~~~p~p------~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~~~~g~t~a 71 (385)
T 2bkw_A 4 SVDTLLIPGP------IILSGAVQKALDVPSLG----HTSPEFVSIFQRVLKNTRAVFKSAA--ASKSQPFVLAGSGTLG 71 (385)
T ss_dssp CCCEECSSSS------CCCCHHHHHTTSCCCCC----TTSHHHHHHHHHHHHHHHHHTTCCG--GGTCEEEEEESCTTHH
T ss_pred ccceeecCCC------cCchHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHhCCCC--CCCCceEEEcCchHHH
Confidence 4446676664 35668888887665432 22221 235678888898886532 3457899999999999
Q ss_pred HHHHHHHhc---CCCCEEEec-CCCccch-HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCc
Q 014603 123 IEVILTVLA---RPGANILLP-RPGFPYY-EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPC 196 (422)
Q Consensus 123 ~~~~~~~l~---~~gd~Vl~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~npt 196 (422)
++.++.++. ++||+|+++ .+.|+.. ...++..|.+++.++.. +.++.+|++.|++.+++ +++++++++|+|||
T Consensus 72 l~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 150 (385)
T 2bkw_A 72 WDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQNSYGAVTVTHVDTST 150 (385)
T ss_dssp HHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHHSCCSEEEEESEETTT
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhcCCCCEEEEEccCCCc
Confidence 999999997 899999888 5566555 36677789999988872 23456899999998876 78999999999999
Q ss_pred ccccCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC-CCCceeEEEEeeCCC
Q 014603 197 GNVYTYQHLQKIAETAKKL--GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLGWLVTSDPN 273 (422)
Q Consensus 197 G~~~~~~~l~~i~~~~~~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~G~r~G~~~~~~~~ 273 (422)
|.+++ +++|.++|+++ |+++|+|++|+.. ....++..++ ..+++.|+||+++ ++| +|++++++
T Consensus 151 G~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~----~~~~~~~~~~---~d~~~~s~~K~~~~~~G--~G~~~~~~-- 216 (385)
T 2bkw_A 151 AVLSD---LKAISQAIKQTSPETFFVVDAVCSIG----CEEFEFDEWG---VDFALTASQKAIGAPAG--LSISLCSS-- 216 (385)
T ss_dssp TEECC---HHHHHHHHHHHCTTSEEEEECTTTTT----TSCCCTTTTT---CSEEEEESSSTTCCCSC--EEEEEECH--
T ss_pred CeEcC---HHHHHHHHHhhCCCCEEEEECccccC----CccccccccC---ceEEEecCccccccCCc--ceEEEEcH--
Confidence 99976 67888999999 9999999999742 2122233332 2488899999654 466 59999863
Q ss_pred CcccchhHHH-HHH------------------h----hhhh----ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 014603 274 GILQDSGIVD-SIK------------------S----FLNI----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETA 326 (422)
Q Consensus 274 ~~~~~~~~~~-~~~------------------~----~~~~----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 326 (422)
++++ ++. . .... .++++...+.++.++++...+..+++.++++++++
T Consensus 217 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 290 (385)
T 2bkw_A 217 ------RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS 290 (385)
T ss_dssp ------HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3444 321 1 1110 13567777777777776533334778889999999
Q ss_pred HHHHHHh-hcCCCCCCCCCC-----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEE-ec
Q 014603 327 DICCDRL-KEIPCITCPKKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRIT-FA 398 (422)
Q Consensus 327 ~~l~~~L-~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis-~~ 398 (422)
+.+.+.| +++ ++.+. .+ ..+.++++.++ +..++...+ .++||.+.+|..+.. .+++||+ ++
T Consensus 291 ~~l~~~L~~~~-g~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~l-~~~gi~v~~g~~~~~~~~~iRis~~~ 359 (385)
T 2bkw_A 291 DWFKDSLVNGL-QLTSV-SRYPSNMSAHGLTAVYVA--------DPPDVIAFL-KSHGVVIAGGIHKDIGPKYIRIGHMG 359 (385)
T ss_dssp HHHHHHHHTTT-CCEES-SCSSSTTBCSSCEEEECS--------CHHHHHHHH-HHTTEECBCCCCTTTGGGEEEECCCG
T ss_pred HHHHHHHHHhc-Cceec-ccCcccccCCceEEEecC--------CHHHHHHHH-HHCCeEEeCCCCcccCCCEEEEEccc
Confidence 9999999 887 76633 32 24678888875 245666666 567999999876532 5789999 65
Q ss_pred -----cChHHHHHHHHHHHHHHHH
Q 014603 399 -----VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 399 -----~~~~~l~~~~~~l~~~~~~ 417 (422)
++++++++++++|++++++
T Consensus 360 ~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 360 VTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp GGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred cccccCCHHHHHHHHHHHHHHHHh
Confidence 4889999999999988754
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-30 Score=244.28 Aligned_cols=314 Identities=13% Similarity=0.131 Sum_probs=227.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCC
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPG 143 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~ 143 (422)
+++.+++.+.+.... ..|.+..+..++|++++++++ .+ +.|++++ |++|++.++.++ +++||+|+++.|+
T Consensus 17 ~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~la~~~~------~~-~~i~~~s-Gt~al~~~l~~l~~~~gd~Vi~~~~~ 87 (388)
T 1b9h_A 17 DAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHG------AA-HALAVTN-GTHALELALQVMGVGPGTEVIVPAFT 87 (388)
T ss_dssp HHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTT------CS-EEEEESC-HHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred HHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHhC------CC-eEEEeCC-HHHHHHHHHHHcCCCCcCEEEECCCc
Confidence 899999999987643 356666778999999999984 22 4555555 599999999999 8999999999999
Q ss_pred ccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcc
Q 014603 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223 (422)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~ 223 (422)
|+++...++..|.+++.+++++ +++.+|++.|++.+++++++++ |+||||.+. ++++|.++|+++|+++|+|+
T Consensus 88 ~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~---~l~~i~~la~~~~~~li~D~ 160 (388)
T 1b9h_A 88 FISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMA---DMDALAKISADTGVPLLQDA 160 (388)
T ss_dssp CTHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCC---CHHHHHHHHHHHTCCBCEEC
T ss_pred cHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCccCcC---CHHHHHHHHHHcCCEEEEec
Confidence 9999999999999999999865 3467999999999987777665 999999985 57888899999999999999
Q ss_pred cccc-cccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH--HHHHHhhhhh---------
Q 014603 224 VYDH-LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI--VDSIKSFLNI--------- 291 (422)
Q Consensus 224 ~~~~-~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~--------- 291 (422)
+|+. ..+.+. ++..++ ++.+.||||..+++|.|+||+++++. .+ .+.+......
T Consensus 161 a~~~g~~~~~~---~~~~~~----~i~~~S~s~~K~l~g~~~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 226 (388)
T 1b9h_A 161 AHAHGARWQGK---RVGELD----SIATFSFQNGKLMTAGEGGAVVFPDG-------ETEKYETAFLRHSCGRPRDDRRY 226 (388)
T ss_dssp TTCTTCEETTE---EGGGSS----SCEEEECCTTSSSCSSSCEEEEECTT-------CHHHHHHHHHHTBTTCCTTCSSC
T ss_pred chhcCCccCCe---eccccc----ceEEEEccCCCcccCCCeEEEEECCH-------HHHHHHHHHHHHhCCCCccCccc
Confidence 9985 333322 222222 37788999666666778999998642 24 4444332210
Q ss_pred -------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-----CCCceEEEEecCccc
Q 014603 292 -------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK-----PEGSMFVMVKLNYSL 359 (422)
Q Consensus 292 -------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~g~~~~~~~~~~~ 359 (422)
+...+.+..+++...+ .++++..++++++++.+.+.|+++|++.+... +.+++++|+.++...
T Consensus 227 ~~~~~g~~~~~~~~~~a~~~~~~-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (388)
T 1b9h_A 227 FHKIAGSNMRLNEFSASVLRAQL-----ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT 301 (388)
T ss_dssp CCCSCCCBCBCBHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC
T ss_pred eeecccccCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC
Confidence 0113333333333333 33666778888899999999999888763321 345788999886410
Q ss_pred ccCCCCHHHHHHHHHHhcCeEEecCCCCC----------------------C-------CCeEEEEec--c-ChHHHHHH
Q 014603 360 LEGINSDMEFALKLAKEESVIVLPGITVG----------------------L-------KDWLRITFA--V-EPSALEDG 407 (422)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----------------------~-------~~~iRis~~--~-~~~~l~~~ 407 (422)
..+..++...| .++||.+.++.... . .+.+|++++ + +++|++++
T Consensus 302 ---~~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~ 377 (388)
T 1b9h_A 302 ---EERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHAT 377 (388)
T ss_dssp ---HHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHH
T ss_pred ---cccHHHHHHHH-HHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHH
Confidence 00244566665 45699998865321 0 135999997 6 89999999
Q ss_pred HHHHHHHHHH
Q 014603 408 LGRMKAFYDR 417 (422)
Q Consensus 408 ~~~l~~~~~~ 417 (422)
++.|++++++
T Consensus 378 ~~~l~~~~~~ 387 (388)
T 1b9h_A 378 AEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-30 Score=245.55 Aligned_cols=334 Identities=17% Similarity=0.182 Sum_probs=237.9
Q ss_pred CCCCce--eecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 43 DTRPLI--PLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i--~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
.|..++ +|+.|.|. +++|+.+.+++.+.+... .|++ ..+..++|++++++++ .+++++|+|+
T Consensus 12 gg~~~~~~~l~~~~p~----~~~p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~gg 76 (424)
T 2po3_A 12 GGPAAFDQPLLVGRPN----RIDRARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAG--------VRHAVATCNA 76 (424)
T ss_dssp TCCCSCSSCEETTCCC----CCCHHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCH
T ss_pred cCCccccccccccCCC----CCChHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCH
Confidence 344444 68888866 577889999999888653 4776 6778999999999993 2589999999
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccc
Q 014603 120 TQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNV 199 (422)
Q Consensus 120 ~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~ 199 (422)
+++++.++.++. +||+|+++.|+|+++...+...|.+++.+++++ +++.+|++.|++.++++++++++++ |+|..
T Consensus 77 t~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~ 151 (424)
T 2po3_A 77 TAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGVH---LWGRP 151 (424)
T ss_dssp HHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEEC---GGGCC
T ss_pred HHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEEC---CCCCc
Confidence 999999999985 789999999999999999999999999998864 3567899999999888888888764 89987
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
.++++|.++|+++|+++|+|++|+ ++.+++. ++..+. + +++.||||..+++|.|+||+++++
T Consensus 152 ---~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~---d-i~~~S~sk~K~l~~~~~G~~v~~~------- 214 (424)
T 2po3_A 152 ---CAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLG---D-AEVFSFHATKAVNAFEGGAVVTDD------- 214 (424)
T ss_dssp ---CCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSS---S-EEEEECCTTSSSCCSSCEEEEESC-------
T ss_pred ---CCHHHHHHHHHHcCCEEEEECccccCCeECCe---eccccc---C-EEEEeCCCCCCccCCCCeEEEeCC-------
Confidence 578899999999999999999998 4555442 222221 2 889999966566778999999863
Q ss_pred hhHHHHHHhhhhhcc----------CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 279 SGIVDSIKSFLNISS----------DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 279 ~~~~~~~~~~~~~~~----------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
+++++++........ ....+.+.++..++.. ...+++..++.+++++.+.+.|++++++.+...|.++
T Consensus 215 ~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 292 (424)
T 2po3_A 215 ADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHG 292 (424)
T ss_dssp HHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGS
T ss_pred HHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCC
Confidence 457777765432110 0101122222222322 2346677788888889999999988787633223332
Q ss_pred ----eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC--------------CCC-------eEEEEec--cCh
Q 014603 349 ----MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--------------LKD-------WLRITFA--VEP 401 (422)
Q Consensus 349 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--------------~~~-------~iRis~~--~~~ 401 (422)
.++++.++.... + .+..++...+ .++||.+.+..... .++ .+|+++. +++
T Consensus 293 ~~~~~~~~i~~~~~~~-~-~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~ 369 (424)
T 2po3_A 293 LNNHQYVIVEIDEATT-G-IHRDLVMEVL-KAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGD 369 (424)
T ss_dssp CCCCCCEEEEECHHHH-S-SCHHHHHHHH-HHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCH
T ss_pred ccccEEEEEEECCccc-h-hhHHHHHHHH-HHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCH
Confidence 233355552100 0 1455666654 66799998732100 011 2777643 789
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014603 402 SALEDGLGRMKAFYDRH 418 (422)
Q Consensus 402 ~~l~~~~~~l~~~~~~~ 418 (422)
+++++++++|.+++++.
T Consensus 370 e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 370 DDIRRVADLLRLCATRG 386 (424)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999988664
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-31 Score=251.75 Aligned_cols=334 Identities=15% Similarity=0.157 Sum_probs=222.2
Q ss_pred CCCCceeecCCCCCCCCCCC-CcHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 43 DTRPLIPLGHGDPSAFPSFR-TASVAVDAIVHSVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
+|..++||..|... ..+. .+|.+.+++.+++..... ..| +.....++++.+++++ ..+++++++|+
T Consensus 63 ~G~~ylD~~~g~~~--~~lgh~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~--------g~~~v~~~~sG 131 (433)
T 1z7d_A 63 NDKRYYDFLSAYSS--VNQGHCHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLL--------GYDKVLMMNTG 131 (433)
T ss_dssp TCCEEEESSHHHHT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHH--------TCSEEEEESSH
T ss_pred CCCEEEEcccchhh--cccCCCCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhc--------CCCeEEEeCCH
Confidence 46778999886533 2244 789999999999876321 112 1223456666666665 25799999999
Q ss_pred HHHHHHHHHHhc---------CCC-CEEEecCCCccchHHHH-hhCC------------CeEEEeeccCCCCcccCHHHH
Q 014603 120 TQAIEVILTVLA---------RPG-ANILLPRPGFPYYEARA-THSH------------LEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 120 ~~a~~~~~~~l~---------~~g-d~Vl~~~~~~~~~~~~~-~~~g------------~~~~~~~~~~~~~~~~d~~~l 176 (422)
++|++.+++.+. .+| |+|++.+|+|+++...+ ...+ .++..++. .|++.|
T Consensus 132 seA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~l 204 (433)
T 1z7d_A 132 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEAL 204 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHH
Confidence 999999998753 367 99999999998864432 2223 12333332 288999
Q ss_pred HHhh-cCCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecC
Q 014603 177 EALA-DENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSI 253 (422)
Q Consensus 177 ~~~~-~~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 253 (422)
++.+ ++++++ ++++| +|++|.+ ++.+++++|.++|+++|+++|+||+|.++.++|... .+...+...++ .|+
T Consensus 205 e~~l~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~-~~~~~~~~~di---~t~ 279 (433)
T 1z7d_A 205 EEELKDPNVCA-FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-CVHHYNVKPDV---ILL 279 (433)
T ss_dssp HHHHTSTTEEE-EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---EEE
T ss_pred HHHhCCCCEEE-EEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch-hhHhcCCCCCE---EEE
Confidence 9988 455554 55666 5678975 688899999999999999999999998776655421 22222222222 378
Q ss_pred ccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 254 sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
||.++ +| +|+||++++ +++++.+.... ..+.+.++++++++.++|+...+ ++..++++++.+++.+
T Consensus 280 sK~l~-~G~~~~G~v~~~--------~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~ 347 (433)
T 1z7d_A 280 GKALS-GGHYPISAVLAN--------DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLE 347 (433)
T ss_dssp CGGGG-TTSSCCEEEEEC--------HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHH
T ss_pred Ccccc-CCCCCeEEEEEC--------HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHH
Confidence 99976 79 999999986 35666554422 23446788889888888875332 2455666777777777
Q ss_pred HhhcC-CCCCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHH
Q 014603 332 RLKEI-PCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDG 407 (422)
Q Consensus 332 ~L~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~ 407 (422)
.|+++ .++... ..+..|.++++.++... .+..++...+. ++||.+.|+. .+++|++++ +++++++++
T Consensus 348 ~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~----~~~~~~~~~l~-~~Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~ 418 (433)
T 1z7d_A 348 NLKRELKDSKIVRDVRGKGLLCAIEFKNEL----VNVLDICLKLK-ENGLITRDVH----DKTIRLTPPLCITKEQLDEC 418 (433)
T ss_dssp HHHHHHTTCTTEEEEEEETTEEEEEECTTT----CCHHHHHHHHH-HTTEECCEET----TTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEeeeeEEEEEEccCh----hHHHHHHHHHH-HCCeEEecCC----CCEEEEECCcCCCHHHHHHH
Confidence 77653 122111 12344678888886420 13566777665 5699998852 578999886 689999999
Q ss_pred HHHHHHHHHHhcc
Q 014603 408 LGRMKAFYDRHAK 420 (422)
Q Consensus 408 ~~~l~~~~~~~~~ 420 (422)
+++|+++++++.+
T Consensus 419 l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 419 TEIIVKTVKFFDE 431 (433)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=248.21 Aligned_cols=331 Identities=14% Similarity=0.097 Sum_probs=234.4
Q ss_pred CCCCceeecCCCCCCCCCCC-CcHHHHHHHHHHhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 43 DTRPLIPLGHGDPSAFPSFR-TASVAVDAIVHSVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
+|..++||..|... .++. .+|++.+++.+++..... ..| +.....++++.+++++ ..+++++++|+
T Consensus 74 ~g~~ylD~~sg~~~--~~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~--------g~~~v~~~~sG 142 (439)
T 2oat_A 74 EGRKYFDFLSSYSA--VNQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLF--------NYHKVLPMNTG 142 (439)
T ss_dssp TCCEEEESSGGGGT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHH--------TCSEEEEESSH
T ss_pred CCCEEEEccCCccc--ccCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhc--------CCCEEEEeCCH
Confidence 46778999887643 2244 789999999999876321 123 2234678888888887 25789999999
Q ss_pred HHHHHHHHHHhc---------CCC-CEEEecCCCccchHH-HHhhCC------------CeEEEeeccCCCCcccCHHHH
Q 014603 120 TQAIEVILTVLA---------RPG-ANILLPRPGFPYYEA-RATHSH------------LEVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 120 ~~a~~~~~~~l~---------~~g-d~Vl~~~~~~~~~~~-~~~~~g------------~~~~~~~~~~~~~~~~d~~~l 176 (422)
++|++.+++++. .+| |+|++.+|+|++... .....+ .++..++. .|++.|
T Consensus 143 seA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~l 215 (439)
T 2oat_A 143 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPAL 215 (439)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHH
Confidence 999999998864 356 899999999988644 333333 23444442 288999
Q ss_pred HHhhc-CCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecC
Q 014603 177 EALAD-ENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSI 253 (422)
Q Consensus 177 ~~~~~-~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 253 (422)
++.++ +++ ++++++| ++++|. .++.+++++|.++|++||+++|+||+|.++.++|... .+...+...++ .|+
T Consensus 216 e~~l~~~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~-~~~~~~~~~Di---~t~ 290 (439)
T 2oat_A 216 ERALQDPNV-AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-AVDYENVRPDI---VLL 290 (439)
T ss_dssp HHHTTSTTE-EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSE---EEE
T ss_pred HHHhCCCCE-EEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch-hHHHhCCCCcE---EEe
Confidence 99884 445 4555666 567896 5688999999999999999999999998776665422 22222322222 288
Q ss_pred ccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 254 sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
||.++ +| +|+||++++ +++++.+.... ..+.+.++++++++.++|+...+ ++..++++++.+++.+
T Consensus 291 sK~l~-~G~~~~G~v~~~--------~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~ 358 (439)
T 2oat_A 291 GKALS-GGLYPVSAVLCD--------DDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRN 358 (439)
T ss_dssp CGGGG-TTSSCCEEEEEC--------HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHH
T ss_pred ccccc-CCCCCeEEEEEC--------HHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Confidence 99976 58 999999986 35666554432 23446788889888888875332 2466788889999999
Q ss_pred HhhcCCCCCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHH
Q 014603 332 RLKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 332 ~L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~ 408 (422)
.|+++ ++.++ ..+..|.++++.++... + .+..++...+. ++||.+.|+. .+++|++++ ++++++++++
T Consensus 359 ~L~~l-~~~~~~~~~~~g~~~~v~l~~~~--~-~~~~~l~~~l~-~~Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l 429 (439)
T 2oat_A 359 ELMKL-PSDVVTAVRGKGLLNAIVIKETK--D-WDAWKVCLRLR-DNGLLAKPTH----GDIIRFAPPLVIKEDELRESI 429 (439)
T ss_dssp HHTTS-CTTTEEEEEEETTEEEEEECCCS--S-CCHHHHHHHHH-HTTEECCBSS----SSEEEECCCTTCCHHHHHHHH
T ss_pred HHHHh-cCCCcEEEEeeeeEEEEEEecCc--c-HHHHHHHHHHH-HCCeEEecCC----CCEEEEECccCCCHHHHHHHH
Confidence 99887 33311 12345678888886421 0 13566777665 5699999853 578999886 7899999999
Q ss_pred HHHHHHHHH
Q 014603 409 GRMKAFYDR 417 (422)
Q Consensus 409 ~~l~~~~~~ 417 (422)
++|++++++
T Consensus 430 ~~l~~~l~~ 438 (439)
T 2oat_A 430 EIINKTILS 438 (439)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998864
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-29 Score=240.27 Aligned_cols=317 Identities=15% Similarity=0.091 Sum_probs=214.0
Q ss_pred eecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC--CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHH
Q 014603 49 PLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS--STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126 (422)
Q Consensus 49 ~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~ 126 (422)
+++.++|.....-...+.+.+++..+........|. +.....+++++++++++ .+ +.+++++|++|++.+
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~--~~i~~~sG~~a~~~~ 95 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLER------GE--AGLATASGISAITTT 95 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHT------CS--EEEEESSHHHHHHHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhC------CC--cEEEECCHHHHHHHH
Confidence 466666552111223344555554211111222343 33456788888888873 22 666777788999999
Q ss_pred HHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 127 LTVLARPGANILLPRPGFPYYEARA----THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 127 ~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+.+++++||+|+++.|+|+++...+ ...|.+++.++.. |++.+++.++++++++++++|+||||.+++
T Consensus 96 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~- 167 (398)
T 2rfv_A 96 LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRPETKVVYIETPANPTLSLVD- 167 (398)
T ss_dssp HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCTTEEEEEEESSBTTTTBCCC-
T ss_pred HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCcccC-
Confidence 9999999999999999999887665 7789888888752 789999999888999999999999999985
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhH
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGI 281 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~ 281 (422)
+++|.++|+++|+++|+|++|+.+.+. .++ .++ ..+++.|+||+++++|.|+ ||++++ +++
T Consensus 168 --l~~i~~l~~~~~~~li~De~~~~~~~~----~~~-~~~---~di~~~s~sK~~~~~g~~~~G~~~~~--------~~~ 229 (398)
T 2rfv_A 168 --IETVAGIAHQQGALLVVDNTFMSPYCQ----QPL-QLG---ADIVVHSVTKYINGHGDVIGGIIVGK--------QEF 229 (398)
T ss_dssp --HHHHHHHHHHTTCEEEEECTTTCTTTC----CGG-GGT---CSEEEEETTTTTTCSSCCCCEEEEEC--------HHH
T ss_pred --HHHHHHHHHHcCCEEEEECCCcccccC----Cch-hhC---CcEEEEeCcccccCCCCceEEEEEEC--------HHH
Confidence 888999999999999999999865432 111 222 3488999999999999998 999986 355
Q ss_pred HH-HHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC--------------CCCCCCC
Q 014603 282 VD-SIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP--------------CITCPKK 344 (422)
Q Consensus 282 ~~-~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------~~~~~~~ 344 (422)
++ .+...... .++.+++.++++.++++. +..+.++..++.+.+.+.|++.+ ++.+. .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~-~ 303 (398)
T 2rfv_A 230 IDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELG-Q 303 (398)
T ss_dssp HHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHH-H
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH-H
Confidence 55 55544433 346788888888888875 23333445556666666666542 22211 1
Q ss_pred C---CCceEEEEecCcccccCCCCHHHHHHHHHHh---cCeEEecCCCCC----------------------C-CCeEEE
Q 014603 345 P---EGSMFVMVKLNYSLLEGINSDMEFALKLAKE---ESVIVLPGITVG----------------------L-KDWLRI 395 (422)
Q Consensus 345 ~---~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~gi~v~~g~~~~----------------------~-~~~iRi 395 (422)
| ..+.++++.++. ..+....++++ .|+.+.+|..+. . ++.+|+
T Consensus 304 ~~~~~~g~~~~~~~~~--------~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRl 375 (398)
T 2rfv_A 304 RQMSLPGGIISFEIAG--------GLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRL 375 (398)
T ss_dssp HHCSSCCSEEEEEETT--------HHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEE
T ss_pred hhCCCCceEEEEEEcC--------CHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEE
Confidence 1 235566667753 11223334433 377787775431 1 579999
Q ss_pred Eec--cChHHHHHHHHHHHH
Q 014603 396 TFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 396 s~~--~~~~~l~~~~~~l~~ 413 (422)
|++ +++++++.+++.|++
T Consensus 376 s~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 376 SVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp ECCSSCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHh
Confidence 998 456777777666654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=255.61 Aligned_cols=342 Identities=12% Similarity=0.050 Sum_probs=233.0
Q ss_pred CCC--CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC--CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 43 DTR--PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC--YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 43 ~~~--~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
+|+ .+|||..|......+ ..+|.+.+++.+++.+..... +.+.....++++++++++ +.+.++|++++|
T Consensus 71 dG~~~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~------~~~~~~v~~~~s 143 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHG-HGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDIT------PAGLDTVFFSDS 143 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTC-BTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHS------STTEEEEEEESS
T ss_pred CCCeeEEEECCCcHhhhccC-CCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC------CCCcCEEEEeCc
Confidence 577 889998875332223 368999999999987632211 112223445666666655 345679999999
Q ss_pred HHHHHHHHHHHhcC-------CC-CEEEecCCCccchHHHHhhCCC--------------eEEEeeccCCCCcccCHHHH
Q 014603 119 CTQAIEVILTVLAR-------PG-ANILLPRPGFPYYEARATHSHL--------------EVRHFDLLPAKGWEVDLDAV 176 (422)
Q Consensus 119 ~~~a~~~~~~~l~~-------~g-d~Vl~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~~~d~~~l 176 (422)
+++|++.+++.+.. +| +.|++.+++|+++...+...+. ++..++.........|++.|
T Consensus 144 GseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~l 223 (457)
T 3tfu_A 144 GSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAF 223 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHH
Confidence 99999999988764 55 5899999999987655544421 22333332211112478888
Q ss_pred HHhhc---CCceEEEEeC-CCCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 177 EALAD---ENTVALVIIN-PGNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 177 ~~~~~---~~~~~i~i~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
++.++ +++.++++.. ++|++|.++ +.+++++|.++|++||+++|+||+|.++.++|... .+..++..++++
T Consensus 224 e~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~-a~~~~~~~pdii--- 299 (457)
T 3tfu_A 224 EAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHAGVSPDIM--- 299 (457)
T ss_dssp HHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEE---
T ss_pred HHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchh-HhHhcCCCceEE---
Confidence 88886 4555565555 589999765 77889999999999999999999999887766432 223333333333
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
|+||.+++..+|+||++++ +++++.+... ...+.+.++++++++.++|+...+ +...++++++
T Consensus 300 t~sK~l~gG~~~lG~v~~~--------~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~ 368 (457)
T 3tfu_A 300 CVGKALTGGYLSLAATLCT--------ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG---QDWRTRITEL 368 (457)
T ss_dssp EECGGGGTTSSCCEEEEEE--------HHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHHHH
T ss_pred EEChhhhCCCcceEEEEEc--------HHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 7899864422799999987 5788877521 123457788999999988875321 2345666677
Q ss_pred HHHHHHHhhcC---CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cC
Q 014603 326 ADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VE 400 (422)
Q Consensus 326 ~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~ 400 (422)
.+++++.|+++ +.+. . .+..|.++++.++.. .+..++...++ ++||.+.|. .+++|++++ .+
T Consensus 369 ~~~l~~~L~~l~~~~~v~-~-vr~~G~~~~i~l~~~-----~~~~~~~~~l~-~~Gv~v~~~-----~~~lRi~p~~~~t 435 (457)
T 3tfu_A 369 AAGLTAGLDTARALPAVT-D-VRVCGAIGVIECDRP-----VDLAVATPAAL-DRGVWLRPF-----RNLVYAMPPYICT 435 (457)
T ss_dssp HHHHHHHHGGGGGSTTEE-E-EEECSSCEEEEESSC-----CCHHHHHHHHH-HTTEECCCB-----TTEEEECCCTTCC
T ss_pred HHHHHHHHHHHhcCCCee-e-eecCCeEEEEEECCc-----ccHHHHHHHHH-HCCeEEEec-----CCEEEEECCCCCC
Confidence 77777777664 3333 1 233467888887642 14566777665 459999874 378999976 68
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 014603 401 PSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~~ 419 (422)
++++++++++|++++++..
T Consensus 436 ~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 436 PAEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=251.77 Aligned_cols=349 Identities=14% Similarity=0.083 Sum_probs=223.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|......+ ..+|++.+++.+++.... .|....+..+.++.+++++.+..+ .+.++|++++||++|
T Consensus 42 ~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 116 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHG-HRKKELDDAIKKQLGKIA--HSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEA 116 (448)
T ss_dssp TSCEEEETTHHHHTCSSC-BSCHHHHHHHHHHHTTCS--CCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHH
T ss_pred CCCEEEECCcchhhccCC-CCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHH
Confidence 688899999886443333 347999999999987632 233334455667777777766543 345799999999999
Q ss_pred HHHHHHHhcC----CC----CEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCCccc----------
Q 014603 123 IEVILTVLAR----PG----ANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKGWEV---------- 171 (422)
Q Consensus 123 ~~~~~~~l~~----~g----d~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~---------- 171 (422)
++.+++.+.. +| |+|++.+|+|+++...+...+. .+..++. .+.+..
T Consensus 117 ~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 117 MEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhhhH
Confidence 9999998765 44 9999999999987644443322 1222222 111111
Q ss_pred -CHHHHHHhhc--CCceEEEEeCC-C-CCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 172 -DLDAVEALAD--ENTVALVIINP-G-NPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 172 -d~~~l~~~~~--~~~~~i~i~~p-~-nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
|++.|++.++ ++..++++++| + |++|. +++.+++++|.++|++||++||+||+|+++.+.|... .....+...
T Consensus 195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-a~~~~~~~~ 273 (448)
T 3dod_A 195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF-ACEHENVQP 273 (448)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh-hhhhcCCCC
Confidence 4788888876 33445555555 5 77775 5678889999999999999999999999877666432 223333322
Q ss_pred CeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHh-------hh-hhccCcchHHHHHHHHHHhhch-HHHH
Q 014603 246 PVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKS-------FL-NISSDPATFIQGAVPQILEKTE-EEFF 315 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~ 315 (422)
+ +.++||.++ +| +|+||++++ +++++.+.. .. ..+.+.++++++++.++|+... +..+
T Consensus 274 d---i~t~sK~l~-~G~~~ig~v~~~--------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 341 (448)
T 3dod_A 274 D---LMAAGKGIT-GGYLPIAVTFAT--------EDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIV 341 (448)
T ss_dssp S---EEEECGGGG-TTSSCCEEEEEE--------HHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred C---EEEeccccc-CCcCceEEEEEC--------HHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHH
Confidence 3 336789975 48 599999986 567777765 22 2345778899999999997533 2334
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc--CCC----CHHHHHHHHHHhcCeEEecCCCCCC
Q 014603 316 SKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE--GIN----SDMEFALKLAKEESVIVLPGITVGL 389 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~gi~v~~g~~~~~ 389 (422)
++.++..+..++.+.+ +.++|.+. . .+..|.++|+.++..... ... ...++...++ ++||.+.|+
T Consensus 342 ~~~~~~~~~~~~~l~~-l~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~----- 412 (448)
T 3dod_A 342 EQVAEKSKKLHFLLQD-LHALPHVG-D-IRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMR-ELGMLTRPL----- 412 (448)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSTTEE-E-EEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECCEE-----
T ss_pred HHHHHHHHHHHHHHHH-HhcCCCeE-E-EEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHH-HCCcEEecc-----
Confidence 4444444444555555 55554333 1 233467888877542100 000 0245666654 569999886
Q ss_pred CCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 390 KDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 390 ~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.+++|++++ ++++++++++++|++++++...
T Consensus 413 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 413 GDVIAFLPPLASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 278999765 7899999999999999987643
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=253.56 Aligned_cols=348 Identities=14% Similarity=0.111 Sum_probs=233.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC-CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST-VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
++..++||..+.+....++. +|++.+++.+++.+.. +... .+..++++.+++.+.+.+ +.++++|++|+|+++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~--~~~~~~v~~~~ggse 121 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTLD---YSPGFQYGHPLSFQLAEKITDLT--PGNLNHVFFTDSGSE 121 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTCS---CCCSSSCCCHHHHHHHHHHHTTS--STTEEEEEEESSHHH
T ss_pred CCCEEEECCccHhhccCCCC-CHHHHHHHHHHHHhCC---CccccccCCHHHHHHHHHHHHhC--CCCCCEEEEcCcHHH
Confidence 57778999877643223333 7999999999986532 1111 233345555566555543 346789999999999
Q ss_pred HHHHHHHHhcC--------CCCEEEecCCCccchHH-HHhhCCC------------eEEEeeccC--CCC-cccC-----
Q 014603 122 AIEVILTVLAR--------PGANILLPRPGFPYYEA-RATHSHL------------EVRHFDLLP--AKG-WEVD----- 172 (422)
Q Consensus 122 a~~~~~~~l~~--------~gd~Vl~~~~~~~~~~~-~~~~~g~------------~~~~~~~~~--~~~-~~~d----- 172 (422)
|++.+++++.. ++|+|++.+|+|+++.. .....+. ++..++... ..+ .++|
T Consensus 122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~ 201 (449)
T 3a8u_X 122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG 201 (449)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence 99999988753 67999999999988643 3333331 234444321 111 1235
Q ss_pred ---HHHHHHhhcC---CceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 173 ---LDAVEALADE---NTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 173 ---~~~l~~~~~~---~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
++.|++.+++ ...++++++| +|+||. ..+.+++++|.++|++||+++|+||+|.++.+.|.. ..+..++..
T Consensus 202 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~-~~~~~~~~~ 280 (449)
T 3a8u_X 202 IALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM-FGADSFGVT 280 (449)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS-SHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc-hhhhhcCCC
Confidence 8899888763 2345666777 467996 567899999999999999999999999876655532 122222322
Q ss_pred CCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh----------hhhccCcchHHHHHHHHHHhhchHH
Q 014603 245 VPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF----------LNISSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
.+++ |+||.+++ | +|+||++++ +++++.+... ...+.+.++++++++.++|+...+
T Consensus 281 ~di~---s~sK~l~~-G~~~~G~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~- 347 (449)
T 3a8u_X 281 PDLM---CIAKQVTN-GAIPMGAVIAS--------TEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK- 347 (449)
T ss_dssp CSEE---EECGGGGT-TSSCCEEEEEE--------HHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred CCEE---EEcccccC-CCCceEEEEEC--------HHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh-
Confidence 2322 78999864 7 999999986 4677777653 122346678888888888875322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCe
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCP-KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 392 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 392 (422)
++..++++++.+.+++.|++++.+..+ ..+..|.++|+.++........+..++...+. ++||.+.|+. ++
T Consensus 348 --~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~g-----~~ 419 (449)
T 3a8u_X 348 --ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGFYVRFGG-----DT 419 (449)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTEECEEET-----TE
T ss_pred --cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHH-HCCcEEecCC-----CE
Confidence 245677888888888888875333311 12345778898886421000001225666665 5699999872 78
Q ss_pred EEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 393 LRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+||+++ ++++++++++++|++++++.
T Consensus 420 iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 420 LQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 999965 78999999999999998764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=245.12 Aligned_cols=324 Identities=14% Similarity=0.088 Sum_probs=223.8
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC--------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC-C-EEEe
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF--------NCYSSTVGILPARRAIADYLNRDLPYKLSPD-D-VYLT 116 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~--------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~-i~~~ 116 (422)
++.++.|. .++|+.+++++.+.+.+... ..|.+ ...++++.+.+.+.+.+| ++++ + +++|
T Consensus 5 ~~l~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g--~~~~~~~i~~t 74 (362)
T 2c0r_A 5 AYNFNAGP------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGA--VYEAVHNEAQARLLALLG--NPTGYKVLFIQ 74 (362)
T ss_dssp CEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSH--HHHHHHHHHHHHHHHHTT--CCSSEEEEEES
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHhhhhhcCccccccCCCcH--HHHHHHHHHHHHHHHHhC--CCCCcEEEEEC
Confidence 45555553 47889999999998753210 11211 123445555555555444 3443 5 4678
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCC--CCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPA--KGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
+|++++++.++.+++++||+|+++.+.+++ +...++..| +++.++.+.+ .+..+|.++++ ++++++++++++|
T Consensus 75 ~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~ 151 (362)
T 2c0r_A 75 GGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSN 151 (362)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESE
T ss_pred CCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCC
Confidence 999999999999999999999988776554 245666778 9988887532 22234655543 6778999999999
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
+||||..++ ++++| +|+++|+|++|+.+. .+.++... .+++.|+||+++++| +||+++++
T Consensus 152 ~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~----~~~~~~~~-----d~~~~s~~K~~g~~G--~G~l~~~~- 211 (362)
T 2c0r_A 152 ETIEGAQFK--AFPDT------GSVPLIGDMSSDILS----RPFDLNQF-----GLVYAGAQKNLGPSG--VTVVIVRE- 211 (362)
T ss_dssp ETTTTEECS--SCCCC------TTSCEEEECTTTTTS----SCCCGGGC-----SEEEEETTTTTCCSS--CEEEEEEG-
T ss_pred cCccceecc--ccccc------CCCEEEEEChhhccC----CccchhHC-----cEEEEeccccccCcC--cEEEEEcH-
Confidence 999999754 45555 799999999998632 22223222 277889999998788 89999874
Q ss_pred CCcccchhHHHHHHh-------------hhhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Q 014603 273 NGILQDSGIVDSIKS-------------FLNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPC 338 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~ 338 (422)
++++++.. .....++++...+.++.++|+...+. ++++.+++++++++.+.+.|+++++
T Consensus 212 -------~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 284 (362)
T 2c0r_A 212 -------DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGG 284 (362)
T ss_dssp -------GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred -------HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222221 11223577788889988888754343 6888999999999999999999853
Q ss_pred C-CCCCCC--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 339 I-TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 339 ~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
+ .+...+ ..+.++++.++.. .+..++...| +++||.+.+|..+ .+++|||++ +++++++++++.|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L-~~~gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 285 FYRGCVDVDSRSDMNITFRLASE-----ELEKEFVKAS-EQEGFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEH 356 (362)
T ss_dssp SSEESSCGGGBCSSEEEEECSCH-----HHHHHHHHHH-HHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccCCChHHcCCcEEEEEcCCc-----chHHHHHHHH-HHCCCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5 422111 2344667777531 1345666655 6679999888765 468999998 579999999999999
Q ss_pred HHHHh
Q 014603 414 FYDRH 418 (422)
Q Consensus 414 ~~~~~ 418 (422)
+++++
T Consensus 357 ~~~~~ 361 (362)
T 2c0r_A 357 FKRSR 361 (362)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=252.46 Aligned_cols=322 Identities=17% Similarity=0.159 Sum_probs=221.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC----CCCE---E
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR----PGAN---I 137 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~gd~---V 137 (422)
+.+.+++.+.+.... ..|.+..+..++|++++++++ .+++++|+||++|++.++.++++ +||+ |
T Consensus 55 ~~v~~a~~~~~~~~~-~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~v 125 (467)
T 1ax4_A 55 NAMSDHQWAAMITGD-EAYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPV 125 (467)
T ss_dssp CCEEHHHHHHHHTCC-CCSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCE
T ss_pred HHHHHHHHHHHhhcc-cccccCccHHHHHHHHHHHcC--------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceE
Confidence 567777777765432 367776788999999999993 36899999999999999999988 9998 9
Q ss_pred EecCCCccchHHHHhhCCCeEEEeeccC---C-----CCcccCHHHHHHhhcC----CceEEEEeCCCCCc-ccccCHHH
Q 014603 138 LLPRPGFPYYEARATHSHLEVRHFDLLP---A-----KGWEVDLDAVEALADE----NTVALVIINPGNPC-GNVYTYQH 204 (422)
Q Consensus 138 l~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-----~~~~~d~~~l~~~~~~----~~~~i~i~~p~npt-G~~~~~~~ 204 (422)
+++.+.|..+.......|..++.++... . .++.+|++.|++.+++ +++++++++|+||+ |.+++.++
T Consensus 126 iv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~ 205 (467)
T 1ax4_A 126 FISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN 205 (467)
T ss_dssp EEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHH
T ss_pred EEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhH
Confidence 8886555666777777888877665421 1 1346899999998863 68899999999999 89999999
Q ss_pred HHHHHHHHHHcCcEEEEcccccc--c--------ccCCCCCCCccccC----CCCCeEEEecCccccCCC-CceeEEEEe
Q 014603 205 LQKIAETAKKLGIMVIADEVYDH--L--------AFGNTPFVPMGVFG----SIVPVLTLGSISKRWIVP-GWRLGWLVT 269 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~--~--------~~~~~~~~~~~~~~----~~~~~i~i~s~sK~~~~~-G~r~G~~~~ 269 (422)
+++|+++|++||+++|+|+++.. . .+.+. ++..+. ...+ +++.|+||+++++ | |++++
T Consensus 206 l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d-~~~~s~sK~~g~~~G---g~~~~ 278 (467)
T 1ax4_A 206 LKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA---TIKEVIFDMYKYAD-ALTMSAKKDPLLNIG---GLVAI 278 (467)
T ss_dssp HHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC---CHHHHHHHHGGGCS-EEEEETTSTTCCSSC---EEEEE
T ss_pred HHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC---chhhhhhhhccccc-eEEEeccccCCCCcc---eEEEe
Confidence 99999999999999999998653 1 22222 111111 0011 5668999998665 4 66766
Q ss_pred eCCCCcccch-hHHHHHHhhhhh------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014603 270 SDPNGILQDS-GIVDSIKSFLNI------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP 342 (422)
Q Consensus 270 ~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 342 (422)
++ + ++++++...... .+..+...+.++..+++...+ ++..++..++++.+.+.|++ +++. +
T Consensus 279 ~d-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~-~~~~-~ 346 (467)
T 1ax4_A 279 RD-------NEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLRE-AGIP-I 346 (467)
T ss_dssp SS-------CHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHH-TTCC-B
T ss_pred CC-------HHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHh-CCCC-c
Confidence 53 3 466665543221 112222223333334443211 11222333566778888877 4776 3
Q ss_pred CCCCCceEEEEe-------cCcccccCCCCHHHHHHHHHHhcCeEEec-CCCC-------C-----CCCeEEEEec---c
Q 014603 343 KKPEGSMFVMVK-------LNYSLLEGINSDMEFALKLAKEESVIVLP-GITV-------G-----LKDWLRITFA---V 399 (422)
Q Consensus 343 ~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~~-------~-----~~~~iRis~~---~ 399 (422)
..|.+++++|+. ++.. + .+..++...+++++||.+.| |..+ + ..+++|++++ +
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~ 422 (467)
T 1ax4_A 347 QYPTGGHAVFVDCKKLVPQIPGD---Q-FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVY 422 (467)
T ss_dssp CSSCCSSEEEEESTTTCTTSCGG---G-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSS
T ss_pred ccCCCceEEEEehhhhccccccC---C-CCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccC
Confidence 367888899988 3211 1 13556777665778999998 5421 1 1379999997 6
Q ss_pred ChHHHHHHHHHHHHHHHHh
Q 014603 400 EPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 400 ~~~~l~~~~~~l~~~~~~~ 418 (422)
+++++++++++|++++++.
T Consensus 423 t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 423 TNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp CHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8999999999999988774
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=247.27 Aligned_cols=322 Identities=15% Similarity=0.111 Sum_probs=226.3
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC---CCCCCCC---CC----CCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA---RFNCYSS---TV----GILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~y~~---~~----g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+++|+.|. .++|+.+.+++.+.+... ....|.. .. ...++++.++++++ .. ++++|+++
T Consensus 4 ~~~~~~g~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g----~~-~~~~v~~~ 72 (360)
T 1w23_A 4 VFNFNAGP------SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ----IP-NDYQILFL 72 (360)
T ss_dssp CEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT----CC-TTEEEEEE
T ss_pred eEeecCCC------cCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhC----CC-CCceEEEE
Confidence 56777765 367799999999987542 1111211 11 24566677777662 22 35799999
Q ss_pred cCH-HHHHHHHHHHhcCC---CCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHH-hhcCCceEEEEeC
Q 014603 117 LGC-TQAIEVILTVLARP---GANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEA-LADENTVALVIIN 191 (422)
Q Consensus 117 ~g~-~~a~~~~~~~l~~~---gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~i~i~~ 191 (422)
+|+ ++|+..++.+++.+ ||.|+++.++|... ..++..| +++.++++++++ .+|++++++ .++++++++++++
T Consensus 73 ~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~-~~d~~~l~~~~i~~~~k~v~~~~ 149 (360)
T 1w23_A 73 QGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANS-YQSIPDFSEFQLNENDAYLHITS 149 (360)
T ss_dssp SSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGT-SCSCCCGGGCCCCTTEEEEEEES
T ss_pred CCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-CeEEeecccccC-cCCccchHhhccCCCCCEEEEeC
Confidence 998 99999999988765 56777777777643 3456678 999998864333 378889988 8888899999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
|+||||.+++ ++. +++|+++|+|++|+.+.. ..++..+ + ++++|+||.|+++| +||+++++
T Consensus 150 ~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~----~~~~~~~--d---i~~~s~sK~~~~~G--~G~~~~~~ 210 (360)
T 1w23_A 150 NNTIYGTQYQ--NFP------EINHAPLIADMSSDILSR----PLKVNQF--G---MIYAGAQKNLGPSG--VTVVIVKK 210 (360)
T ss_dssp EETTTTEECS--SCC------CCCSSCEEEECTTTTTSS----CCCGGGC--S---EEEEETTTTTSCTT--CEEEEEEH
T ss_pred CCCCcceecc--ccc------ccCCceEEEechhhcCCC----CcCcccC--C---EEEEEcccccCCCC--cEEEEEcH
Confidence 9999999986 332 279999999999986431 2233332 2 78999999988666 89999863
Q ss_pred CCCcccchhHHHHHHhhh-------------hhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 272 PNGILQDSGIVDSIKSFL-------------NISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
++++++.... ...++++...+.++..+++...+. ++++..++++++++.+.+.|++++
T Consensus 211 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 282 (360)
T 1w23_A 211 --------DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN 282 (360)
T ss_dssp --------HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred --------HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444333211 112355667777777777653333 678889999999999999999986
Q ss_pred CC-CCCCCC--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHH
Q 014603 338 CI-TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 338 ~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
++ .....| .++.++|+.++.. .+..++...+ .++||.+.+|..+ .+++|++++ ++++++++++++|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l-~~~gi~~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~ 354 (360)
T 1w23_A 283 GFYVGHAEKGSRSLMNVTFNLRNE-----ELNQQFLAKA-KEQGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMI 354 (360)
T ss_dssp TSSEESSCGGGBCSSEEEEECSSH-----HHHHHHHHHH-HHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcccccCCchhccCcEEEEEcCCC-----ccHHHHHHHH-HHCCeeeecCCCC--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 54 311123 2355888888642 0244555554 5679999988754 588999998 68899999999999
Q ss_pred HHHHH
Q 014603 413 AFYDR 417 (422)
Q Consensus 413 ~~~~~ 417 (422)
+++++
T Consensus 355 ~~~~~ 359 (360)
T 1w23_A 355 QFKEN 359 (360)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=246.36 Aligned_cols=321 Identities=13% Similarity=0.089 Sum_probs=227.7
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC----C-C--CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC----Y-S--STVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~----y-~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
++.++|+.+.+. +.++.+.+++.+++.....+. + . ......++++.+++++ ++++++|++|+
T Consensus 27 ~~~~yld~~~~~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~~~ 95 (416)
T 1qz9_A 27 EGVIYLDGNSLG-----ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI------GARDGEVVVTD 95 (416)
T ss_dssp TTCEECCTTTSC-----CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT------TCCTTSEEECS
T ss_pred CCeEeecCCCcC-----CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc------CCCcccEEEeC
Confidence 567888887643 567889999999886531111 1 1 0133467777777776 45678999999
Q ss_pred CHHHHHHHHHHHhc------CCCCEE-EecCCCccchHHH----HhhC--CCeEEEeeccCCCCcccCHHHHHHhhcCCc
Q 014603 118 GCTQAIEVILTVLA------RPGANI-LLPRPGFPYYEAR----ATHS--HLEVRHFDLLPAKGWEVDLDAVEALADENT 184 (422)
Q Consensus 118 g~~~a~~~~~~~l~------~~gd~V-l~~~~~~~~~~~~----~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 184 (422)
|+++++..++.+++ ++||+| ++..++|+.+... ++.. |.+++.++. ++.|++.+++++
T Consensus 96 g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~~ 166 (416)
T 1qz9_A 96 TTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQDT 166 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTTE
T ss_pred ChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCCc
Confidence 99999998888876 889875 4555677654332 2233 888877764 678888888889
Q ss_pred eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee
Q 014603 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~ 264 (422)
+++++++|+||||.+++ +++|.++|+++|+++|+|++|+. |.....+..++. .+++.|++|++ .+|.++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~----g~~~~~~~~~~~---d~~~~s~~K~l-~~g~~~ 235 (416)
T 1qz9_A 167 AVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA----GAVPVDLHQAGA---DYAIGCTYKYL-NGGPGS 235 (416)
T ss_dssp EEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCHHHHTC---SEEEECSSSTT-CCCTTC
T ss_pred eEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc----cCcCCChhhcCC---CEEEecCcccC-CCCCCC
Confidence 99999999999999976 78889999999999999999974 222222333333 38889999995 456777
Q ss_pred -EEEEeeCCCCcccchhHHHHHHhh------------------------hhhccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 265 -GWLVTSDPNGILQDSGIVDSIKSF------------------------LNISSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 265 -G~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
|++++++. +.+.+... ....++++...+.++.++++...+.++++..
T Consensus 236 ~g~l~~~~~--------~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 307 (416)
T 1qz9_A 236 QAFVWVSPQ--------LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307 (416)
T ss_dssp CCEEEECTT--------TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred eEEEEECHH--------HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99998642 22222211 1112356677777777777653334577888
Q ss_pred HHHHHHHHHHHHHhhcC-C--CCCCCCCCC----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCe
Q 014603 320 DILRETADICCDRLKEI-P--CITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 392 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~-~--~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 392 (422)
++++++++.+.+.|+++ | ++.+. .+. .+.++++.++ +..++...+ .++||.+... ..++
T Consensus 308 ~~~~~~~~~l~~~L~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--------~~~~l~~~l-~~~gi~~~~~----~~~~ 373 (416)
T 1qz9_A 308 RKSLALTDLFIELVEQRCAAHELTLV-TPREHAKRGSHVSFEHP--------EGYAVIQAL-IDRGVIGDYR----EPRI 373 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEC-SCSSGGGBCSEEEEECT--------THHHHHHHH-HTTTEECEEE----TTTE
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEe-CCCCHHHcCCEEEEecC--------CHHHHHHHH-HhCCcEeccC----CCCe
Confidence 89999999999999885 6 67633 442 2567788775 255666666 4669987542 3678
Q ss_pred EEEEec---cChHHHHHHHHHHHHHHHHh
Q 014603 393 LRITFA---VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 393 iRis~~---~~~~~l~~~~~~l~~~~~~~ 418 (422)
+||+++ ++++++++++++|++++++.
T Consensus 374 lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 374 MRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp EEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 999986 58999999999999998764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=250.04 Aligned_cols=349 Identities=17% Similarity=0.135 Sum_probs=234.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|.|.+++.+++.+.. .+....+..+.+..+++++.+..+ .+.+.|++++||++|
T Consensus 52 ~G~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~l~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 126 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVG-YGRREIVDAMAHQAMVLP--YASPWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTA 126 (476)
T ss_dssp TCCEEEETTHHHHTCTTC-BCCHHHHHHHHHHHHHCC--CCCTTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHH
T ss_pred CCCEEEECCCchhhccCC-CCCHHHHHHHHHHHHhcc--CcccCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHH
Confidence 688899999885432222 358999999999987632 122223456788888888887654 345799999999999
Q ss_pred HHHHHHHhcC--------CCCEEEecCCCccchHHHHhhCCCe-------------EEEeeccCC-CCcccC--------
Q 014603 123 IEVILTVLAR--------PGANILLPRPGFPYYEARATHSHLE-------------VRHFDLLPA-KGWEVD-------- 172 (422)
Q Consensus 123 ~~~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~-~~~~~d-------- 172 (422)
++.+++.++. .++.|++.+++|+++...+...+.. +..++.... ..+..+
T Consensus 127 ~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 206 (476)
T 3i5t_A 127 VDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDL 206 (476)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHH
Confidence 9999998753 3579999999999887655543321 222221100 001112
Q ss_pred HHHHHHhhc----CCceEEEEeCCCCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc-ccCCCCC
Q 014603 173 LDAVEALAD----ENTVALVIINPGNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG-VFGSIVP 246 (422)
Q Consensus 173 ~~~l~~~~~----~~~~~i~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~-~~~~~~~ 246 (422)
++.|++.++ +++.++++..+++++|. +++.+++++|.++|++||+++|+||+|+++.++|... .+. .++..++
T Consensus 207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~-~~~~~~~v~pd 285 (476)
T 3i5t_A 207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWF-ASEKVFGVVPD 285 (476)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHTTCCCCS
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCce-eeecccCCCcc
Confidence 678888775 23444444444677785 7888999999999999999999999999887776532 222 3333333
Q ss_pred eEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHHHHH
Q 014603 247 VLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEFFSK 317 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 317 (422)
++ ++||.++ .| +|+|+++++ +++++.+... ...+.+.++++++++.++|+...+ ++
T Consensus 286 i~---t~sK~l~-~G~~plg~v~~~--------~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~ 350 (476)
T 3i5t_A 286 II---TFAKGVT-SGYVPLGGLAIS--------EAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER---EG 350 (476)
T ss_dssp EE---EECGGGG-TTSSCCEEEEEC--------HHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH---TT
T ss_pred hh---hhhhhhc-CCCcCeEEEEEC--------HHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh---HH
Confidence 33 5689975 48 999999986 5777777653 223457788999999999985332 34
Q ss_pred HHHHHHHHHHHHHHHhhcC---CCCCCCCCCCCceEEEEecCcccccCCC------CHHHHHHHHHHhcCeEEecCCCCC
Q 014603 318 ITDILRETADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGIN------SDMEFALKLAKEESVIVLPGITVG 388 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~ 388 (422)
..++++++.+++++.|+++ |.+. . .+..|.++++.+......... ...++...+ .++||.+.|..
T Consensus 351 ~~~~~~~~~~~l~~~L~~l~~~~~v~-~-v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~g--- 424 (476)
T 3i5t_A 351 IVDQAREMADYFAAALASLRDLPGVA-E-TRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERC-FELGLIVRPLG--- 424 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEE-E-EEEETTEEEEEECCC-----CCHHHHHHHHHHHHHH-HHTTEECEEET---
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeE-E-EEecCceeEEEEecCccccccccchhHHHHHHHHHH-HHCCCEEEecC---
Confidence 5566667777777777654 3332 1 233466777776532100000 033455555 45699999842
Q ss_pred CCCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 389 LKDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 389 ~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
+++||+++ ++++++++++++|++++++..+
T Consensus 425 --~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 425 --DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp --TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999965 7999999999999999987654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=250.67 Aligned_cols=343 Identities=14% Similarity=0.065 Sum_probs=227.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|......+ +.+|++.+++.+++.+.....| +.....++++++++++ + .++++++++||++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~~~~~~~~-~~~~~~~l~~~la~~~------~-~~~~v~~~~~Gsea 121 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHG-HANDRVVEALKAVAERGTSFGA-PTEIENKLAKLVIERV------P-SIEIVRMVNSGTEA 121 (429)
T ss_dssp TCCEEEESCGGGTTCTTC-BSCHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHS------T-TCSEEEEESSHHHH
T ss_pred CCCEEEECCCChhhcccC-CCCHHHHHHHHHHHhhCcCcCC-CCHHHHHHHHHHHHhC------C-CCCEEEEeCChHHH
Confidence 588899999987543222 3589999999999876443334 3345667888888776 2 56899999999999
Q ss_pred HHHHHHHhcC--CCCEEEecCCCccchHHHHhhC-CCeEEEeeccCCCCcc------------cCHHHHHHhhcC--Cce
Q 014603 123 IEVILTVLAR--PGANILLPRPGFPYYEARATHS-HLEVRHFDLLPAKGWE------------VDLDAVEALADE--NTV 185 (422)
Q Consensus 123 ~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~--~~~ 185 (422)
++.+++.+.. ++++|++.+++|+++...+... +.....++.....+.. -|++.|++.+++ +..
T Consensus 122 ~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 201 (429)
T 3k28_A 122 TMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDI 201 (429)
T ss_dssp HHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCE
Confidence 9999987754 5689999999998765444322 2222211111111100 178899888763 345
Q ss_pred EEEEeCCC-CCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 186 ALVIINPG-NPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 186 ~i~i~~p~-nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++++++|. |++|.+ ++.+++++|.++|++||+++|+||+|.++ +.|... .....+...+ +.++||.++ +|+|
T Consensus 202 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~~~~~~~~d---i~t~sK~~~-~G~~ 275 (429)
T 3k28_A 202 ACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNC-GQGYYGVTPD---LTCLGKVIG-GGLP 275 (429)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTH-HHHHHTCCCS---EEEECGGGG-TTSC
T ss_pred EEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-HHHHhCCCCc---eehhhhhhc-CCCC
Confidence 56666774 455654 46788999999999999999999999887 554321 1222222222 346899986 5999
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE---- 335 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---- 335 (422)
+||++++ +++++.+... ...+.++++++++++.++|+... ++..++++++++++++.|++
T Consensus 276 iG~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~ 343 (429)
T 3k28_A 276 VGAYGGK--------AEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEK 343 (429)
T ss_dssp CEEEEEC--------HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEc--------HHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999986 4676666442 22345778899999999998643 44556666666666666654
Q ss_pred CCCCCCCCCCCCceEEEEecCcccc--------cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLL--------EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDG 407 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~ 407 (422)
.+.+. . .+..|.++++.+..... .......++...+ .++||.+.|+. .+.+|+++.+++++++++
T Consensus 344 ~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~----~~~~r~~~~~t~e~i~~~ 416 (429)
T 3k28_A 344 HGIPH-H-INRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREM-VEQGVFLPPSQ----FEGLFLSTVHSDADIEAT 416 (429)
T ss_dssp TTCCC-E-EEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSST----TSCBCCCTTCCHHHHHHH
T ss_pred CCCCE-E-EEeeccEEEEEEecCCcccccccccccHHHHHHHHHHH-HHCCeEEecCC----CCCEEEECCCCHHHHHHH
Confidence 33332 2 23446677776642110 0000124455555 56799999874 356899888899999999
Q ss_pred HHHHHHHHHHhc
Q 014603 408 LGRMKAFYDRHA 419 (422)
Q Consensus 408 ~~~l~~~~~~~~ 419 (422)
+++|++++++++
T Consensus 417 l~~l~~~l~~~~ 428 (429)
T 3k28_A 417 IAAAEIAMSKLK 428 (429)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=249.64 Aligned_cols=349 Identities=15% Similarity=0.116 Sum_probs=229.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|.+.+|+.+++.+... .|....+..+.+..+++.+.+.. +.+.++|++++||++|
T Consensus 53 ~G~~ylD~~s~~~~~~lG-h~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~~lae~l~~~~--~~~~~~v~~~~sGseA 128 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIG-YGRDELAEVAARQMRELPY-YNTFFKTTHVPAIALAQKLAELA--PGDLNHVFFAGGGSEA 128 (472)
T ss_dssp TCCEEECTTHHHHTCTTC-BCCHHHHHHHHHHHHHCSC-CCSSSSEECHHHHHHHHHHHHHS--CTTEEEEEEESSHHHH
T ss_pred CCCEEEECCCchhhccCC-CCCHHHHHHHHHHHHhccc-cccccccCCHHHHHHHHHHHHhC--CCCCCEEEEeCCHHHH
Confidence 588899999885432222 3579999999999876321 23222233345555555555443 3456799999999999
Q ss_pred HHHHHHHhcC--------CCCEEEecCCCccchHHHHhhCCC------------eEEEeeccC--C-CCcccC-------
Q 014603 123 IEVILTVLAR--------PGANILLPRPGFPYYEARATHSHL------------EVRHFDLLP--A-KGWEVD------- 172 (422)
Q Consensus 123 ~~~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~g~------------~~~~~~~~~--~-~~~~~d------- 172 (422)
++.+++.+.. ++++|++.+++|+++...+...+. .+..++... . +++ .|
T Consensus 129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~ 207 (472)
T 3hmu_A 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLA 207 (472)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHH
Confidence 9999998764 458999999999988655544332 233443211 0 111 23
Q ss_pred -HHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCC
Q 014603 173 -LDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP 246 (422)
Q Consensus 173 -~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (422)
++.|++.++ ++..++++++| ++++|.+ ++++.+++|.++|+++|+++|+||+|.++.++|... ....++..++
T Consensus 208 ~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~-a~~~~~v~pd 286 (472)
T 3hmu_A 208 RARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF-GTQTMGIRPH 286 (472)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-HHHHHTCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccc-hhHHhCCCCc
Confidence 677887775 23455666666 5667765 488899999999999999999999999887776422 2233333333
Q ss_pred eEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh---hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHH
Q 014603 247 VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF---LNISSDPATFIQGAVPQILEKTEEEFFSKITDILR 323 (422)
Q Consensus 247 ~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 323 (422)
++ ++||.++..|+|+|+++++ +++++.+... ...+.+.++++++++.++|+...+ ++..++++
T Consensus 287 i~---t~sK~l~gg~~plG~v~~~--------~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~ 352 (472)
T 3hmu_A 287 IM---TIAKGLSSGYAPIGGSIVC--------DEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENILDHVR 352 (472)
T ss_dssp EE---EECGGGTTTSSCCEEEEEE--------HHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred ee---eechhhhcCCcceEEEEEC--------HHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHH
Confidence 33 5689977666999999996 5788887321 123457788999999999975332 23445555
Q ss_pred -HHHHHHHHHhhcC---CCCCCCCCCCCceEEEEecCccccc--CC-----CCHHHHHHHHHHhcCeEEecCCCCCCCCe
Q 014603 324 -ETADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLE--GI-----NSDMEFALKLAKEESVIVLPGITVGLKDW 392 (422)
Q Consensus 324 -~~~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~--~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 392 (422)
++.+++++.|+++ |.+. . .+..|.++++.+...... .. ....++...+ .++||.+.|+. ++
T Consensus 353 ~~~~~~l~~~L~~l~~~~~v~-~-vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~g-----~~ 424 (472)
T 3hmu_A 353 NVAAPYLKEKWEALTDHPLVG-E-AKIVGMMASIALTPNKASRAKFASEPGTIGYICRERC-FANNLIMRHVG-----DR 424 (472)
T ss_dssp HTHHHHHHHHHHGGGGSTTEE-E-EEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHH-HHTTBCCEEET-----TE
T ss_pred HHHHHHHHHHHHHHhcCCCeE-E-EEecCceEEEEEecCccccccccchhHHHHHHHHHHH-HHCCcEEEecC-----CE
Confidence 5555666665543 4333 2 233466777766431100 00 0034555555 45699999863 79
Q ss_pred EEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 393 LRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+||+++ .+++++++++++|++++++..
T Consensus 425 iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 425 MIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999965 799999999999999987753
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=246.44 Aligned_cols=312 Identities=13% Similarity=0.096 Sum_probs=227.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCE--EEecCHHHHHHHHHHHhcCCC--------CEEEecCCCccchHHHH
Q 014603 82 CYSSTVGILPARRAIADYLNRDLPYKLSPDDV--YLTLGCTQAIEVILTVLARPG--------ANILLPRPGFPYYEARA 151 (422)
Q Consensus 82 ~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~l~~~g--------d~Vl~~~~~~~~~~~~~ 151 (422)
.|....+..++++.+++++.+.+|...+++++ ++|+|+++|+..++.+++++| |+|+++.++|.++...+
T Consensus 130 ~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~ 209 (514)
T 3mad_A 130 HPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAA 209 (514)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHH
Confidence 34444456678888888887777655545788 999999999999999987766 89999999999999999
Q ss_pred hhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc-
Q 014603 152 THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF- 230 (422)
Q Consensus 152 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~- 230 (422)
+..|.+++.++.++ ++.+|++.|++.++++++++++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+.+
T Consensus 210 ~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDea~~~~~~~ 284 (514)
T 3mad_A 210 QYFGIKLVRTPLDA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGGFILP 284 (514)
T ss_dssp HHHTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTTTTHH
T ss_pred HHcCCeeEEeeeCC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEecccccccch
Confidence 99999999998864 5679999999999989999999999999999965 78889999999999999999987543
Q ss_pred ----CCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh------------hhccC
Q 014603 231 ----GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL------------NISSD 294 (422)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 294 (422)
.|.....+. .......+++.|++|+ +.+|.++|++++++ +......... ...++
T Consensus 285 ~~~~~g~~~~~~~-~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~gs 354 (514)
T 3mad_A 285 WAERLGYPVPPFD-FRLEGVTSVSADTHKY-GYGAKGTSVILYRR--------PDLLHYQYFIAADWPGGLYFSPTFAGS 354 (514)
T ss_dssp HHHHTTCCCCCCS-TTSTTCCEEEECTTTT-TCCCSSCEEEEESS--------HHHHTTTCEEESSCTTCSEEESSSCSS
T ss_pred hHHhcCCCCCccc-ccCCCCcEEEECchhc-cCCCCCeEEEEEeC--------HHHhccccccccccCCCcccCCccCCC
Confidence 122111111 1111224888899998 46677899999864 2222111000 01123
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHH
Q 014603 295 PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 374 (422)
Q Consensus 295 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (422)
.+.....+...++......++++..+++.++++++.+.|++++++.++ .+..+ ++++..+. .+..++...+
T Consensus 355 ~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~-~~~~~~~~------~~~~~l~~~L- 425 (514)
T 3mad_A 355 RPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKIL-GDPLW-VIAVASDE------LNIYQVMEEM- 425 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEES-SCCSS-EEEEECSS------SCHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEe-CCCeE-EEEEeCCC------CCHHHHHHHH-
Confidence 333333344444443345678889999999999999999998888744 44434 66665532 1566777766
Q ss_pred HhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHHHHHHHHHHHhcc
Q 014603 375 KEESVIVLPGITVGLKDWLRITFA---VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 375 ~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.++||.+ +|..+ ++++|++++ ++++++++++++|++++++..+
T Consensus 426 ~~~Gi~v-~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 426 AGRGWRL-NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp HTTTCBC-EEETT--TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCEe-ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4559988 44333 578999987 4679999999999999987654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=246.41 Aligned_cols=328 Identities=17% Similarity=0.144 Sum_probs=220.8
Q ss_pred CCceeecCC-CCCCCCCCCCcHHHHHHHHHH---hhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 45 RPLIPLGHG-DPSAFPSFRTASVAVDAIVHS---VRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 45 ~~~i~l~~g-~~~~~~~~~~~~~v~~a~~~~---~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.++|+|+.| ++. ++.++.+.+++... ........|.. .+.+ +++.+++++.+.+| .+++++++||+
T Consensus 89 ~~~i~l~~g~~~~----~~~~~~i~~a~~~~~~~~~~~~~~~Y~~-~g~~-~~~~l~~~la~~~g----~~~~i~~~sGt 158 (464)
T 1ibj_A 89 TLLVNLDNKFDPF----DAMSTPLYQTATFKQPSAIENGPYDYTR-SGNP-TRDALESLLAKLDK----ADRAFCFTSGM 158 (464)
T ss_dssp HHHTCCCCSSCTT----CCSSCCCCCCSBCCCSSSSCCCSCSBTT-TCCH-HHHHHHHHHHHHHT----CSEEEEESSHH
T ss_pred CeEEECCCCCCCC----CCCCccHHhhhhhhhhcccccCCccccC-CCCH-HHHHHHHHHHHHhC----CCeEEEECCHH
Confidence 347888887 533 56666676665532 11222345653 3444 56666666665444 24788888889
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC 196 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt 196 (422)
+|+..++. ++++||+|+++.|+|+++... ++..|.+++.++.. |++.|++.++++++++++++|+|||
T Consensus 159 ~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~~tk~v~l~~p~Npt 230 (464)
T 1ibj_A 159 AALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGPQTKLVWLESPTNPR 230 (464)
T ss_dssp HHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCSSEEEEEECSSCTTT
T ss_pred HHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhccCceEEEEeCCCCCC
Confidence 99998886 778999999999999988653 45678888888752 7899999998899999999999999
Q ss_pred ccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCc
Q 014603 197 GNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGI 275 (422)
Q Consensus 197 G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~ 275 (422)
|.+++ +++|+++|+++|+++|+|++|.. +....++. + +..+++.|+||++++ +|+|+||+++++
T Consensus 231 G~v~~---l~~i~~la~~~gi~livDea~~~----g~~~~~~~-~---~~div~~S~sK~~~g~~Gl~~G~l~~~~---- 295 (464)
T 1ibj_A 231 QQISD---IRKISEMAHAQGALVLVDNSIMS----PVLSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKG---- 295 (464)
T ss_dssp CCCCC---HHHHHHHHHTTTCEEEEECTTTC----TTTCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECS----
T ss_pred CEeec---HHHHHHHHHHcCCEEEEECCCcc----cccCChhh-c---CCEEEEECCcccccCCCCCcEEEEEECh----
Confidence 99984 88899999999999999999975 22111222 2 345999999998865 489999999863
Q ss_pred ccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH----------HHhhcCCCCCCCCC
Q 014603 276 LQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICC----------DRLKEIPCITCPKK 344 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~----------~~L~~~~~~~~~~~ 344 (422)
+++.+.+..... ...+.+++.++++.++++.. ...+++..+......+.+. +.|+++|++.+. .
T Consensus 296 ---~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~-~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~-~ 370 (464)
T 1ibj_A 296 ---EKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM-ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH-F 370 (464)
T ss_dssp ---HHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHH-T
T ss_pred ---HHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH-HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHH-h
Confidence 357777766553 23456778888888887642 1222222222222222222 233344444422 2
Q ss_pred CC---CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC------------CC----------CC-CCeEEEEec
Q 014603 345 PE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI------------TV----------GL-KDWLRITFA 398 (422)
Q Consensus 345 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~------------~~----------~~-~~~iRis~~ 398 (422)
+. .|.++++.++.. .....+...+ +..||.+.+|. .+ +. ++++|++++
T Consensus 371 ~~~~g~g~~~~~~l~~~-----~~~~~~~~~L-~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg 444 (464)
T 1ibj_A 371 SQAKGAGSVFSFITGSV-----ALSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 444 (464)
T ss_dssp TTCSCCCSEEEEECSCH-----HHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC
T ss_pred ccCCCCceEEEEEECCH-----HHHHHHHHhc-CcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeC
Confidence 32 245777777421 0122344443 45688888875 11 22 578999999
Q ss_pred cChHHHHHHHHHHHHHHHHh
Q 014603 399 VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~~ 418 (422)
. +++++++++|++++++.
T Consensus 445 ~--edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 445 I--EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp S--SCHHHHHHHHHHHHHSC
T ss_pred C--CCHHHHHHHHHHHHhhc
Confidence 8 89999999999998753
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=246.84 Aligned_cols=334 Identities=13% Similarity=0.076 Sum_probs=239.3
Q ss_pred CCcHHHHHHHHHHhhCC---CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC-----C
Q 014603 62 RTASVAVDAIVHSVRSA---RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR-----P 133 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~-----~ 133 (422)
+.++.+.+++.+.+... ....|....+..++++.+++++.+.+|...+++++++++|+++|+..++.++++ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 44577888887776542 222444455677888899888888887665678999999999999999998854 4
Q ss_pred C---CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHH
Q 014603 134 G---ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAE 210 (422)
Q Consensus 134 g---d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~ 210 (422)
| |+|+++.++|..+...+...|.+++.++.++ +++.+|++.|++.++++++++++++|+||+|.+. ++++|.+
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~---~l~~i~~ 230 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIAD---DIEGLGK 230 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCC---SCTTTTT
T ss_pred CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCC---CHHHHHH
Confidence 5 8999999999999999999999999999864 3567999999999998999999999999999995 4778899
Q ss_pred HHHHcCcEEEEcccccccccC-----CCCCC-CccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 211 TAKKLGIMVIADEVYDHLAFG-----NTPFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 211 ~~~~~~~~li~D~~~~~~~~~-----~~~~~-~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
+|+++|+++|+|++|+.+... +.... ++. .....-.+++.|++|+ +.+|.++|++++++ +....
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~-~~~~g~d~~~~s~~K~-l~~~~~~g~~~~~~--------~~~~~ 300 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLD-FRVPGVTSISCDTHKY-GFAPKGSSVIMYRN--------SDLRM 300 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCS-TTSTTCCEEEEETTTT-TCCCSSCEEEECSS--------HHHHT
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhcccCCcccc-ccCCCCcEEEECchhh-cCCCCCceeEEecC--------HHHHh
Confidence 999999999999999854321 11111 111 1111123788899998 56778899999864 22222
Q ss_pred HHhhhh--h----------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEE
Q 014603 285 IKSFLN--I----------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFV 351 (422)
Q Consensus 285 ~~~~~~--~----------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~ 351 (422)
...... . .++.+.....+...++......++.+..++..++++++.+.|++ +|++.++..|..+ ++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~-~v 379 (497)
T 3mc6_A 301 HQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYS-VI 379 (497)
T ss_dssp TTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSS-EE
T ss_pred hhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCee-EE
Confidence 211100 0 01111122223333333333466788889999999999999999 6888855345544 44
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHHHHhcc
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
++..+. .+..++...| .++||.+.++.. ...+|++++ ++++++++++++|++++++..+
T Consensus 380 ~~~~~~------~~~~~l~~~L-~~~Gi~v~~~~~---~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 380 SFSSKT------LNIHELSDRL-SKKGWHFNALQK---PVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp EEECTT------TTHHHHHHHH-HTTTCBCEECCS---SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred EEeCCC------CCHHHHHHHH-HhCCEEEecCCC---CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 444432 1466776666 556999887643 347899998 7889999999999999987754
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=237.83 Aligned_cols=323 Identities=13% Similarity=0.133 Sum_probs=231.6
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV 125 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~ 125 (422)
++|+|+. |. + ++.+.+++.+.+... .|.+..+..++|+.++++++ .+++++++|+++|++.
T Consensus 9 ~~i~~~~--p~----~--~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~ 69 (393)
T 1mdo_A 9 DFLPFSR--PA----M--GAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHI 69 (393)
T ss_dssp CCBCSCC--CC----C--CHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHH
T ss_pred cccccCC--CC----C--CHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHH
Confidence 4678875 22 2 367889998888653 23345678899999999993 2479999999999999
Q ss_pred HHHHh-cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHH
Q 014603 126 ILTVL-ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 126 ~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
++.++ +++||+|+++.|+|+++...++..|.+++.+++++ +++.+|++.+++.+++++++++++ ||+|... +
T Consensus 70 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~---~ 142 (393)
T 1mdo_A 70 ALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPV---HYAGAPA---D 142 (393)
T ss_dssp HHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCCC---C
T ss_pred HHHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEe---CCCCCcC---C
Confidence 99999 89999999999999999999999999999998864 346799999999998888877765 4799885 5
Q ss_pred HHHHHHHHHHcCcEEEEcccccc-cccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 205 LQKIAETAKKLGIMVIADEVYDH-LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
+++|.++|+++|+++|+|++|+. ..+.+. + ++. ..+++.|+||..+++|.|+||+++++ +++.+
T Consensus 143 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~---~~~--~d~~~~S~~k~K~l~~~~~g~~~~~~-------~~~~~ 207 (393)
T 1mdo_A 143 LDAIYALGERYGIPVIEDAAHATGTSYKGR---H---IGA--RGTAIFSFHAIKNITCAEGGIVVTDN-------PQFAD 207 (393)
T ss_dssp HHHHHHHHHHHTCCBCEECTTCTTCEETTE---E---TTS--SSEEEEECCTTSSSCSSSCEEEEESC-------HHHHH
T ss_pred HHHHHHHHHHcCCeEEEECccccCCeECCe---e---cCC--CCeEEEeCCCCCccccccceEEEeCC-------HHHHH
Confidence 88889999999999999999985 333322 1 111 34889999933334556899999853 45777
Q ss_pred HHHhhhhhc-------------------------cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014603 284 SIKSFLNIS-------------------------SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC 338 (422)
Q Consensus 284 ~~~~~~~~~-------------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 338 (422)
++....... ...+.+..+++...++. +++..++.+++++.+.+.|++++
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~- 281 (393)
T 1mdo_A 208 KLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQK-----LDALNARRAAIAAQYHQAMADLP- 281 (393)
T ss_dssp HHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCC-
Confidence 665533210 01233333333333332 55666677778888999999885
Q ss_pred CCCCCCC-----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC--------------CC-------CCe
Q 014603 339 ITCPKKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV--------------GL-------KDW 392 (422)
Q Consensus 339 ~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--------------~~-------~~~ 392 (422)
+.+...+ .++.++|+.++.... + .+..++...+ .++||.+.+|..+ .. ..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (393)
T 1mdo_A 282 FQPLSLPSWEHIHAWHLFIIRVDEARC-G-ITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERI 358 (393)
T ss_dssp CEECCCCSSCEECCCSCEEEECCHHHH-S-SCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTE
T ss_pred cccccCCCCCCCceeEEEEEEeccccc-c-cCHHHHHHHH-HhCCCCcccccCccccChhhhccCCccCChhHHHHHhCE
Confidence 5532222 345678888863100 0 1466676666 5579999988754 11 347
Q ss_pred EEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 393 LRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+|++++ ++++++++++++|+++++.+
T Consensus 359 lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 359 CSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 999998 68999999999999988665
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=242.48 Aligned_cols=299 Identities=13% Similarity=0.101 Sum_probs=206.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCC--EEEecCCCccchHH---HHhhCC
Q 014603 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGA--NILLPRPGFPYYEA---RATHSH 155 (422)
Q Consensus 81 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd--~Vl~~~~~~~~~~~---~~~~~g 155 (422)
..|++..+..+++++++++++ . +..++++||++++..++++++.+|| .|+++.++|..... .....|
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~------~--~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g 112 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLG------M--DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHP 112 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSS
T ss_pred ccccCChHHHHHHHHHHHHhC------C--CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccC
Confidence 467776788999999999983 2 3446668889999999999988888 67777666544322 345567
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc-ccccCHHHHHHHHHHHHHcCcEEEEcccccc--cccCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC-GNVYTYQHLQKIAETAKKLGIMVIADEVYDH--LAFGN 232 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~--~~~~~ 232 (422)
..++.++. +++.+|++.+++.. +++++++++|+||+ |.+++.+++++|+++|++||++||+|++|.. ..+.+
T Consensus 113 ~~~~~v~~---~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~ 187 (357)
T 3lws_A 113 IETILVGA---ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYE 187 (357)
T ss_dssp CEEEECSC---TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT
T ss_pred cEEEEecC---CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcC
Confidence 77777763 34568999999873 38899999999998 9999999999999999999999999999862 11112
Q ss_pred CCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc-cCc--chHHHHHHHHHHhh
Q 014603 233 TPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDP--ATFIQGAVPQILEK 309 (422)
Q Consensus 233 ~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~a~~~~l~~ 309 (422)
.....+. ...+ +++.|+||+|++++. ||++++ +++++.+....... +.. ....+.++..+++.
T Consensus 188 ~~~~~~~--~~~d--~~~~s~sK~~~~~~g--g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 253 (357)
T 3lws_A 188 KTAAEIA--GLFD--SIYISFYKGLGGIAG--AILAGP--------AAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL 253 (357)
T ss_dssp CCHHHHH--TTSS--EEEEESSSTTCCSSC--EEEEEC--------HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH
T ss_pred CChHHHH--hcCC--EEEEeccccCCCCce--EEEEcC--------HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence 2111111 1111 457899999844332 888875 56777776554322 111 22333344444543
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC
Q 014603 310 TEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL 389 (422)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~ 389 (422)
+.+ ..+++.++++.+.+.|+++|++.+...|..++++|+.++.... .+..++.. .+.++||.+.||..+..
T Consensus 254 ----~~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~l~~~Gi~v~~g~~~~~ 324 (357)
T 3lws_A 254 ----RKD-RMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---DISPKLEQ-VQEETGLGFVGYLVDKD 324 (357)
T ss_dssp ----HTT-CHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH---HHHHHHHH-HHHHHCEESCSCCEECS
T ss_pred ----HHH-HHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH---HHHHHHHH-HHHhcCeEEecccccCC
Confidence 222 2344577788999999999888742356778899998864210 01344444 45677999999976653
Q ss_pred -CCeEEEEec-----cChHHHHHHHHHHHHHH
Q 014603 390 -KDWLRITFA-----VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 390 -~~~iRis~~-----~~~~~l~~~~~~l~~~~ 415 (422)
..++|++++ .+.+++++++++|.+++
T Consensus 325 ~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 325 GYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred CceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 238999986 47799999999998865
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=236.15 Aligned_cols=320 Identities=18% Similarity=0.197 Sum_probs=225.8
Q ss_pred CcHHHHHHHHHHhhCCCCCCCCCCCC----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEE
Q 014603 63 TASVAVDAIVHSVRSARFNCYSSTVG----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANI 137 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~V 137 (422)
.++++.+++.+.+.......|++..| ..++++.++++++ .+ ++++++||++|+..++.++ +++||+|
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g------~~--~~i~~~~gt~al~~~~~~~~~~~gd~V 85 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNG------VP--YCVPTTSGSTALMLALEALGIGEGDEV 85 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHT------CS--EEEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhC------CC--cEEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence 47899999999987654434776666 4566666666662 22 5777888899999999999 8999999
Q ss_pred EecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCc
Q 014603 138 LLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI 217 (422)
Q Consensus 138 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~ 217 (422)
+++.|+|+++...++..|.+++.+++++ +++.+|++.|++.+++++++++++ ||||.. .++++|.++|+++|+
T Consensus 86 l~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~---~~~~~i~~~~~~~~~ 158 (418)
T 2c81_A 86 IVPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIPV---HLFGSM---ANMDEINEIAQEHNL 158 (418)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCTTEEEECCB---CCTTCC---CCHHHHHHHHHHTTC
T ss_pred EECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEEe---CCcCCc---ccHHHHHHHHHHCCC
Confidence 9999999999999999999999998864 357799999999998888877754 589987 568899999999999
Q ss_pred EEEEcccccccc-cCCCCCCCccccCCCCCeEEEecC--ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc--
Q 014603 218 MVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-- 292 (422)
Q Consensus 218 ~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~--sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (422)
++|+|++|+.+. +++.. +..+. .+.+.|| ||.+++ | |+||+++++ +++.+++.......
T Consensus 159 ~li~D~a~~~~~~~~~~~---~~~~~----~~~~~s~s~~K~~~~-g-~~g~~~~~~-------~~l~~~~~~~~~~~~~ 222 (418)
T 2c81_A 159 FVIEDCAQSHGSVWNNQR---AGTIG----DIGAFSCQQGKVLTA-G-EGGIIVTKN-------PRLFELIQQLRADSRV 222 (418)
T ss_dssp EEEEECTTCTTCEETTEE---TTSSS----SEEEEECCTTSSSCS-S-SCEEEEESC-------HHHHHHHHHHHBTTEE
T ss_pred EEEEECcccccCccCCEe---ccccc----ceEEEeccCCcccCC-C-CeEEEEECC-------HHHHHHHHHHHHhCcc
Confidence 999999999865 44321 22222 1667777 999876 8 999999853 45666666543210
Q ss_pred -----------cC--c---c--------hHHHHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 293 -----------SD--P---A--------TFIQGAVP-QILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 293 -----------~~--~---~--------~~~~~a~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
.. . . ...+.++. ..+ ..+++..++.+++++.+.+.|+++|++.+...+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 297 (418)
T 2c81_A 223 YCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL-----QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQ 297 (418)
T ss_dssp ECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTT
T ss_pred ccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 00 0 0 01111111 112 23566777778888999999999888774323444
Q ss_pred -ceE----EEEecCcccccCCCCHHHHHHHHHHhcCeE---EecCCCCC-----------------------------C-
Q 014603 348 -SMF----VMVKLNYSLLEGINSDMEFALKLAKEESVI---VLPGITVG-----------------------------L- 389 (422)
Q Consensus 348 -g~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~---v~~g~~~~-----------------------------~- 389 (422)
+.. +.+.++.....+ .+..++...|.+++||. +.++..+. .
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (418)
T 2c81_A 298 VSRQTYYGYVFRFDPVKFGG-LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYP 376 (418)
T ss_dssp EEECCCSEEEEEECGGGTTT-CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCH
T ss_pred CcccccEEEEEEEccccccc-cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCCh
Confidence 222 225554210001 25667777765544999 88875220 0
Q ss_pred ------CCeEEEEec--c-ChHHHHHHHHHHHHHHHHhc
Q 014603 390 ------KDWLRITFA--V-EPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 390 ------~~~iRis~~--~-~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.+|++++ + +++|++++++.|+++++++.
T Consensus 377 ~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 377 VSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp HHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 148999997 7 89999999999999987654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=248.03 Aligned_cols=333 Identities=11% Similarity=0.077 Sum_probs=231.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC----CC---CCCCCC-CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS----AR---FNCYSS-TVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~----~~---~~~y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
++.|.|+.+... +.++.+.+++.+.+.. +. ...|.+ .....++++++++++ +.++++|++|
T Consensus 66 ~~~iyld~~~~g-----~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~------g~~~~~v~~t 134 (465)
T 3e9k_A 66 ENAIYFLGNSLG-----LQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV------GANEKEIALM 134 (465)
T ss_dssp CBCEECBTTTSC-----CEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH------TCCGGGEEEC
T ss_pred CCeEEecCCccC-----CChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc------CCCcCCEEEE
Confidence 567899888744 3345555555444321 11 112222 234577899999988 4578899999
Q ss_pred cCHHHHHHHHHHHhcCCCC---EEEecCCCccch----HHHHhhCCCeEEE--eeccC-CCCcccCHHHHHHhhc---CC
Q 014603 117 LGCTQAIEVILTVLARPGA---NILLPRPGFPYY----EARATHSHLEVRH--FDLLP-AKGWEVDLDAVEALAD---EN 183 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd---~Vl~~~~~~~~~----~~~~~~~g~~~~~--~~~~~-~~~~~~d~~~l~~~~~---~~ 183 (422)
+|++++++.++.++.++|+ +|+++.|+|++. ...++..|.++.. +.+.+ ++++.+|+++|++.++ ++
T Consensus 135 ~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~ 214 (465)
T 3e9k_A 135 NALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDS 214 (465)
T ss_dssp SCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCC
Confidence 9999999999999987665 499999999874 3356667877521 12212 2456789999999885 57
Q ss_pred ceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC-CCCc
Q 014603 184 TVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI-VPGW 262 (422)
Q Consensus 184 ~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~G~ 262 (422)
++++++++|+||||.+++ +++|.++|+++|+++|+|++|+. |.....+...+.+ ++++|++|++. +|+
T Consensus 215 ~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~----g~~~~~~~~~~~D---~~~~s~~K~l~~gp~- 283 (465)
T 3e9k_A 215 IAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV----GNVELYLHDWGVD---FACWCSYKYLNAGAG- 283 (465)
T ss_dssp EEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCC---EEEECSSSTTCCCTT-
T ss_pred eEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc----CCcCCchhhcCCC---EEEECcccccccCCC-
Confidence 889999999999999976 67888899999999999999975 3333333334433 88899999973 343
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhh--------------------------hhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSF--------------------------LNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
++|++++++ ++.+.+... ....++++.+...++.++++...+..++
T Consensus 284 ~~g~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~ 355 (465)
T 3e9k_A 284 GIAGAFIHE--------KHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMK 355 (465)
T ss_dssp CCCEEEECG--------GGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred ceEEEEEcH--------HHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHH
Confidence 688888853 222222110 0012366777777777777754444588
Q ss_pred HHHHHHHHHHHHHHHHhhcC----------CCCCCCCCCC----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe
Q 014603 317 KITDILRETADICCDRLKEI----------PCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 382 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~----------~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 382 (422)
+.+++..++++++.+.|+++ +++.+. .|. .|.++++.++. +..++...+ .++||.+.
T Consensus 356 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~-~p~~~~~~g~~~~~~~~~-------~~~~l~~~L-~~~Gi~v~ 426 (465)
T 3e9k_A 356 ALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNII-TPSHVEERGCQLTITFSV-------PNKDVFQEL-EKRGVVCD 426 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------CEEEC-SCSSGGGBCSCEEEEECC-------TTCCHHHHH-HTTTEECE
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEe-CCCCHhhcccEEEEEecC-------CHHHHHHHH-HHCCEEEe
Confidence 89999999999999999884 677733 454 26677777762 234566666 45699987
Q ss_pred cCCCCCCCCeEEEEe-c--cChHHHHHHHHHHHHHHHHhcc
Q 014603 383 PGITVGLKDWLRITF-A--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 383 ~g~~~~~~~~iRis~-~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
. ..++++|+++ + ++.++++++++.|++++++..+
T Consensus 427 ~----~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~~ 463 (465)
T 3e9k_A 427 K----RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAET 463 (465)
T ss_dssp E----ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC---
T ss_pred c----CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhccc
Confidence 3 2368999998 4 7899999999999999876544
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=245.84 Aligned_cols=346 Identities=13% Similarity=0.076 Sum_probs=234.5
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCC------CCCCCCHHHHHHHHHHHhhcCCCCCCC--CCEEEe
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCY------SSTVGILPARRAIADYLNRDLPYKLSP--DDVYLT 116 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y------~~~~g~~~lr~~ia~~l~~~~~~~~~~--~~i~~~ 116 (422)
.+.|+|..+. -++++.+++++.+.+.+.....| .......++++.+.+++.+.+|...+. .+|+++
T Consensus 44 ~~~i~L~a~e------~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~ 117 (483)
T 1rv3_A 44 RVGLELIASE------NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY 117 (483)
T ss_dssp HSSEECCTTC------CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS
T ss_pred hcCeEEEcCC------CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC
Confidence 4678996664 24679999999988865322123 222345677877777777766543211 237777
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH--------HhhCC--CeEEEeeccCCCCcccCHHHHHHhhc-CCce
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEAR--------ATHSH--LEVRHFDLLPAKGWEVDLDAVEALAD-ENTV 185 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~--------~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~ 185 (422)
+|+ +++.+++.++++|||+|+++++.|.++... +...| ...+.+++++ +++.+|++.|++.++ ++++
T Consensus 118 sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~-~~~~iD~d~le~~i~~~~tk 195 (483)
T 1rv3_A 118 SGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNP-DTGYIDYDRLEENARLFHPK 195 (483)
T ss_dssp SHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCS
T ss_pred CcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcccc-CCCcCCHHHHHHHHhhcCCc
Confidence 777 888888999999999999999998766431 22333 3444444443 357799999999987 6889
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~ 264 (422)
++++ +++|++ .++ ++++|.++|+++|+++|+|++|. ++.+.+....++. .. .+++.|+||++ .|+|.
T Consensus 196 lIi~-~~sn~~-~~~---dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--~~---div~~s~~K~l--~Gprg 263 (483)
T 1rv3_A 196 LIIA-GTSCYS-RNL---DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--HC---HVVTTTTHKTL--RGCRA 263 (483)
T ss_dssp EEEE-CCSSCC-SCC---CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--TC---SEEEEESSGGG--CCCSC
T ss_pred EEEE-eCCcCC-CcC---CHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC--CC---cEEEecCcccC--CCCCc
Confidence 8888 888888 665 48889999999999999999986 3333332222221 12 28889999985 57788
Q ss_pred EEEEeeCCCCcccch-------hHHHHHHhhh--hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 265 GWLVTSDPNGILQDS-------GIVDSIKSFL--NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 265 G~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
|++++++........ ++...+.... ...++++...+.+...+++...+.++++..+++.++++.+.+.|++
T Consensus 264 G~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (483)
T 1rv3_A 264 GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE 343 (483)
T ss_dssp EEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 999997531000000 2333333322 1234566666666666776543456788899999999999999998
Q ss_pred CCCCCCCCCCC-CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe----cCCCCC-CCCeEEEEec--cC----hHH
Q 014603 336 IPCITCPKKPE-GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITVG-LKDWLRITFA--VE----PSA 403 (422)
Q Consensus 336 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~~~-~~~~iRis~~--~~----~~~ 403 (422)
+ ++.++ .+. ...+.|+.+... + .+..++ ..++++.||.+. ||..+. ..+++||+++ ++ +++
T Consensus 344 ~-g~~~~-~~~~~~~~~~v~~~~~---g-~~~~~~-~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~ed 416 (483)
T 1rv3_A 344 L-GYKIV-TGGSDNHLILVDLRSK---G-TDGGRA-EKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKD 416 (483)
T ss_dssp T-TCEEG-GGSCSSSEEEEEGGGG---T-CCHHHH-HHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHH
T ss_pred c-CCEec-cCCCCCceEEEeccCC---C-CCHHHH-HHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHH
Confidence 8 77743 332 345778777532 1 145555 445577899999 887432 2579999997 45 899
Q ss_pred HHHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYDR 417 (422)
Q Consensus 404 l~~~~~~l~~~~~~ 417 (422)
+++++++|.++++.
T Consensus 417 i~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 417 FQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998876
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=236.87 Aligned_cols=324 Identities=15% Similarity=0.186 Sum_probs=229.7
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+.++++|+.+.|. ..+ +.+++.+.+... .|.+..+..++|+.++++++ .+++++++||++|+
T Consensus 5 ~~~~~~l~~~~~~------~~~-~~~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~ 66 (374)
T 3uwc_A 5 RVPYSYLERQFAD------IEP-YLNDLREFIKTA---DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDAL 66 (374)
T ss_dssp CBCSCCHHHHTSS------CHH-HHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHH
T ss_pred cceeeccccCCCC------chH-HHHHHHHHHHcC---CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHH
Confidence 3557888888744 234 888888877653 46666788999999999983 23889999999999
Q ss_pred HHHHHHh-cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCH
Q 014603 124 EVILTVL-ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTY 202 (422)
Q Consensus 124 ~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~ 202 (422)
+.++.++ +++||+|+++.|+|+++...++..|.+++.++.+ +++.+|++.+++.+++++++++ |+||||...
T Consensus 67 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~-- 139 (374)
T 3uwc_A 67 AMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIA-- 139 (374)
T ss_dssp HHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCC--
T ss_pred HHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcC--
Confidence 9999999 8999999999999999999999999999999876 4567899999999988777666 899999985
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccch
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDS 279 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~ 279 (422)
++++|.++|+++|+++|+|++|+.+. +.+. ....+ . .+++.|+| |+++++|. .|++++++ +
T Consensus 140 -~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~---~~~~~-~---d~~~~s~~~~K~l~~~g~-~g~~~~~~-------~ 203 (374)
T 3uwc_A 140 -DMPALAKIAKKHNLHIVEDACQTILGRINDK---FVGSW-G---QFACFSLHPLKNLNVWSD-AGVIITHS-------D 203 (374)
T ss_dssp -CHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSS-S---SEEEEECSSSSSSCCSSC-CEEEEESC-------H
T ss_pred -CHHHHHHHHHHcCCEEEEeCCCccCceeCCe---ecccc-c---cEEEEeCCCCCcCCccce-eEEEEeCC-------H
Confidence 48888999999999999999998633 2221 11111 1 27778866 99766565 78888764 4
Q ss_pred hHHHHHHhhhhh-------------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCC
Q 014603 280 GIVDSIKSFLNI-------------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC-ITCPKKP 345 (422)
Q Consensus 280 ~~~~~~~~~~~~-------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~ 345 (422)
++.+.+...... ....+.+..++....+ ..+++..++.+++.+.+.+.|+++++ +.+...+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 278 (374)
T 3uwc_A 204 EYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRR 278 (374)
T ss_dssp HHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCC
T ss_pred HHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCC
Confidence 566666554321 0111222222222222 23566777788888999999998876 6533233
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-----------------------CCeEEEEec--cC
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----------------------KDWLRITFA--VE 400 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------------~~~iRis~~--~~ 400 (422)
..+...|..++... .+..++...+ .++||.+.++..... .+.+|++++ ++
T Consensus 279 ~~~~~~~~~~~~~~----~~~~~l~~~L-~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t 353 (374)
T 3uwc_A 279 EGVYHVFHIYVLRV----KYRDQLFQYL-KDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLT 353 (374)
T ss_dssp TTEECCCSSEEEEE----TTHHHHHHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSC
T ss_pred CCCceeeEEEEEEc----CCHHHHHHHH-HHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCC
Confidence 33222221111110 1455666665 566999998861100 167999987 78
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 014603 401 PSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~ 418 (422)
+++++++++.|++++++.
T Consensus 354 ~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 354 EEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=241.57 Aligned_cols=329 Identities=14% Similarity=0.062 Sum_probs=222.8
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
.-..+.++.+.. .++++|++.+++.+.+.. ..|.+..+..+++++++++++ . +..++++||++++
T Consensus 12 ~~~~~~~~~~~~----~~g~~p~v~~ai~~~~~~---~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~~g~~a~ 76 (359)
T 3pj0_A 12 KTPYKLGGNGPR----NVGVLTEALQNIDDNLES---DIYGNGAVIEDFETKIAKILG------K--QSAVFFPSGTMAQ 76 (359)
T ss_dssp TCSEESSSSSCC----BHHHHHHHTTTSCTTCBC---CBTTBSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHH
T ss_pred hcchhhcCCCcc----ccCCCHHHHHHHHhhccc---CcccCCHHHHHHHHHHHHHhC------C--CcEEEeCCHHHHH
Confidence 344455555552 245678888888774432 357666778999999999983 2 2346668889999
Q ss_pred HHHHHHhcCCCCE--EEecCCCccchH---HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCc-c
Q 014603 124 EVILTVLARPGAN--ILLPRPGFPYYE---ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPC-G 197 (422)
Q Consensus 124 ~~~~~~l~~~gd~--Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~npt-G 197 (422)
..++.+++.+||+ |+++.++|.... ..+...|.+++.++. +++.+|++.|++. .++++++++++|+||+ |
T Consensus 77 ~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G 152 (359)
T 3pj0_A 77 QIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-REPVSSVLIELPQREIGG 152 (359)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTS
T ss_pred HHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-cCCceEEEEEecccCCCc
Confidence 9999999888886 555555553322 222456888887765 3457899999988 7789999999999988 7
Q ss_pred cccCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCc
Q 014603 198 NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF--GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~--~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~ 275 (422)
.+++.+++++|+++|++||++||+|++|..... .+.....+. ...+ +++.|+||++++++ + |+++.+
T Consensus 153 ~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d-~~~~s~sK~~~~~~-g-g~~~~~----- 221 (359)
T 3pj0_A 153 QLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC---ALFD-SVYVSFYKGIGGIA-G-AILAGN----- 221 (359)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH---TTCS-EEEEESSSTTCCSS-C-EEEEEC-----
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh---ccCC-EEEEeccccCCCcc-e-EEEECC-----
Confidence 999999999999999999999999999865321 121111111 1112 55669999876653 2 666664
Q ss_pred ccchhHHHHHHhhhhhc-cCc--chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEE
Q 014603 276 LQDSGIVDSIKSFLNIS-SDP--ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVM 352 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~ 352 (422)
+++++++....... +.. ....+.++..+++. .. +..+++.++++.+.+.|+++|++.+...|..++++|
T Consensus 222 ---~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 293 (359)
T 3pj0_A 222 ---DDFVQEAKIWKRRYGGDLISLYPYILSADYYFEK----RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFH 293 (359)
T ss_dssp ---HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH----HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEE
T ss_pred ---HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH----HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEE
Confidence 57888877644221 111 22233333344433 12 334456788889999999998887423566777888
Q ss_pred EecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-----cChHHHHHHHHHHHHH
Q 014603 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-----VEPSALEDGLGRMKAF 414 (422)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-----~~~~~l~~~~~~l~~~ 414 (422)
+.++.... .+..++.. .+.++||.+.||..|+. .+++|++++ .+.+++++++++|.++
T Consensus 294 ~~~~~~~~---~~~~~l~~-~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 294 VYFENSAD---EIGAILTK-IQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EEESSCHH---HHHHHHHH-HHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred EEecCccc---hhHHHHHH-HHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 87763210 01334444 45677999999987654 358999886 4689999999998875
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=244.79 Aligned_cols=334 Identities=13% Similarity=0.080 Sum_probs=218.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++..+|||+.|.+....++ .+|.+.+++.+++.... .|. +..++++.+++++.+.++ .+++|++++|+++|
T Consensus 55 ~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA 125 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSHGV--QYA---ASHPLEVRWAERIVAAFP---SIRKLRFTGSGTET 125 (453)
T ss_dssp TCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTTTC--SSC---SSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHH
T ss_pred CCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHhCC--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHH
Confidence 4778899998875533333 68999999999987632 232 356899999999987654 57899999999999
Q ss_pred HHHHHHH---hcCCCCEEEecCCCccchHHHHhh-C----------CCe------EEEeeccCCCCcccCHHHHHHhhcC
Q 014603 123 IEVILTV---LARPGANILLPRPGFPYYEARATH-S----------HLE------VRHFDLLPAKGWEVDLDAVEALADE 182 (422)
Q Consensus 123 ~~~~~~~---l~~~gd~Vl~~~~~~~~~~~~~~~-~----------g~~------~~~~~~~~~~~~~~d~~~l~~~~~~ 182 (422)
++.++++ +.++ +.|++.+|+|+++...+.. . |.. +..++ + .|++.|++.+++
T Consensus 126 ~~~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~-~d~~~le~~l~~ 197 (453)
T 2cy8_A 126 TLLALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR------P-DDIEGMREVFAN 197 (453)
T ss_dssp HHHHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEEC------T-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC------C-CCHHHHHHHHHh
Confidence 9999987 6654 7888999999876543322 1 221 11121 1 388999988763
Q ss_pred --CceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccC
Q 014603 183 --NTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWI 258 (422)
Q Consensus 183 --~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~ 258 (422)
...++++++| +|++|.+ .+.+++++|.++|++||+++|+||+|+++ +.|.. ..+..++...+ +.|+||.++
T Consensus 198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK~l~ 272 (453)
T 2cy8_A 198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH-GMQALLDVQPD---LTCLAKASA 272 (453)
T ss_dssp HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTT-HHHHHHTCCCS---EEEEEGGGG
T ss_pred cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCch-hhhHHhCCCCc---EEEEChhhh
Confidence 2345566777 4679976 47999999999999999999999999976 44431 11222222222 338899986
Q ss_pred CCCceeEEEEeeCCCCcccchhHHHHHHh---h---hhhccCcchHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHH
Q 014603 259 VPGWRLGWLVTSDPNGILQDSGIVDSIKS---F---LNISSDPATFIQGAVPQILEK-TEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 259 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
+ |+|+||++++ +++++.+.. . ...+.++++++++++.++|+. . .++..++++++++.+++
T Consensus 273 ~-G~~~G~v~~~--------~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~----~~~~~~~~~~~~~~l~~ 339 (453)
T 2cy8_A 273 G-GLPGGILGGR--------EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL----EDDVCAKINDLGQFARE 339 (453)
T ss_dssp T-TSSCEEEEEC--------HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHH
T ss_pred C-CcceEEEech--------HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHH
Confidence 4 8999999986 456665544 1 222346788889888888874 3 13345566666667766
Q ss_pred HhhcCC---CCCCCCCCCCceEEEEecCc-----c----cccC-----CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEE
Q 014603 332 RLKEIP---CITCPKKPEGSMFVMVKLNY-----S----LLEG-----INSDMEFALKLAKEESVIVLPGITVGLKDWLR 394 (422)
Q Consensus 332 ~L~~~~---~~~~~~~~~~g~~~~~~~~~-----~----~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR 394 (422)
.|+++. ++... .+..|.++|+.++. . .... .....++...++ ++||.+.|+ +.+|
T Consensus 340 ~L~~~~~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~------~~~~ 411 (453)
T 2cy8_A 340 AMNHLFARKGLNWL-AYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGGR------GSVF 411 (453)
T ss_dssp HHHHHHHHTTCCEE-EECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBTT------TEEE
T ss_pred HHHHHHhhCCCcEE-EEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeEEeCC------CCEE
Confidence 665431 22211 34456788888863 1 0000 001345666665 569999653 2477
Q ss_pred EEeccChHHHHHHHHHHHHHHHHhc
Q 014603 395 ITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 395 is~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
+++.++++++++++++|+++++++.
T Consensus 412 l~~~~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 412 LSAQHEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHH
Confidence 7766899999999999999988764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=244.70 Aligned_cols=336 Identities=13% Similarity=0.091 Sum_probs=223.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
++..+|||+.|.+....++ .+|.+.+++.+++.......|.. ....++++.+++++ + .+++|++++|+++|
T Consensus 54 ~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~~~~~~~-~~~~~l~~~la~~~------~-~~~~v~~~~sgseA 124 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGH-KHPRVLEAVEEALARGWLYGAPG-EAEVLLAEKILGYV------K-RGGMIRFVNSGTEA 124 (434)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSSCC-HHHHHHHHHHHHHH------C-TTCEEEEESSHHHH
T ss_pred CCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHhC------C-CCCEEEEeCCHHHH
Confidence 5778999998875432333 68999999999997743223322 22345555555554 2 46899999999999
Q ss_pred HHHHHHH---hcCCCCEEEecCCCccchHHHHh-h-------------CCC------eEEEeeccCCCCcccCHHHHHHh
Q 014603 123 IEVILTV---LARPGANILLPRPGFPYYEARAT-H-------------SHL------EVRHFDLLPAKGWEVDLDAVEAL 179 (422)
Q Consensus 123 ~~~~~~~---l~~~gd~Vl~~~~~~~~~~~~~~-~-------------~g~------~~~~~~~~~~~~~~~d~~~l~~~ 179 (422)
++.+++. +. +++.|++.+++|+++...+. . .|. .+..++. .|++.|++.
T Consensus 125 ~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~ 196 (434)
T 2epj_A 125 TMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERV 196 (434)
T ss_dssp HHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHH
T ss_pred HHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHH
Confidence 9999987 44 45788899999988644322 1 122 1333331 278899888
Q ss_pred hcC--CceEEEEeCC-CCCccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 180 ADE--NTVALVIINP-GNPCGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 180 ~~~--~~~~i~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
+++ +..++++++| ++++|.++ +.+++++|.++|++||+++|+||+|+++ +.|.. ..+..++...+ +.|+||
T Consensus 197 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK 271 (434)
T 2epj_A 197 FAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE-GAQGYFNIEGD---IIVLGK 271 (434)
T ss_dssp HHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT-HHHHHHTCCCS---EEEEEG
T ss_pred HHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc-hhhHHhCCCCC---eeeecc
Confidence 763 2445666777 56799865 7999999999999999999999999976 33321 11122222222 348899
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
.+++ |+|+||++++ +++++.+... ...+.+.++++++++.++|+...+ ++..++++++.+++++
T Consensus 272 ~l~~-G~~~G~v~~~--------~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~ 339 (434)
T 2epj_A 272 IIGG-GFPVGAVAGS--------REVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEE 339 (434)
T ss_dssp GGGT-TSSCEEEEEC--------HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHH
T ss_pred hhcC-Ccceeeeeec--------HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHH
Confidence 9876 9999999986 4566665541 122346788889888888875322 3455667777777777
Q ss_pred HhhcCC---CCCCCCCCCCceEEEEecCcccccC--------CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccC
Q 014603 332 RLKEIP---CITCPKKPEGSMFVMVKLNYSLLEG--------INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE 400 (422)
Q Consensus 332 ~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~ 400 (422)
.|+++. ++. ...+..|.++|+.++...... .....++...+ .++||.+.|+.. ..+|+++.++
T Consensus 340 ~L~~~~~~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~----~~~~~~~~~t 413 (434)
T 2epj_A 340 AASEVLDRTGLP-YTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEM-LRRGVFIAPSNL----EAVFTGLPHQ 413 (434)
T ss_dssp HHHHHHHHHTCC-EEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTT----SCEECCTTCS
T ss_pred HHHHHHhhCCCc-EEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHH-HHCCeEEeccCC----CcEEEeccCC
Confidence 776541 232 112345678888886410000 00134555655 467999999752 3577776789
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 014603 401 PSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~ 418 (422)
++++++++++|+++++++
T Consensus 414 ~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 414 GEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998775
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=237.37 Aligned_cols=337 Identities=14% Similarity=0.094 Sum_probs=220.7
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
+.|+|..+. + +.+|.+.+++.+++.+.....|+ ......++++.+.+.+.+.+ ++++++|++++|
T Consensus 26 ~~i~l~~~~-----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--g~~~~~i~~~sG- 96 (417)
T 3n0l_A 26 EGLEMIASE-----N-FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF--NCKFANVQPNSG- 96 (417)
T ss_dssp HSEECCTTC-----C-CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH--TCSEEECCCSSH-
T ss_pred cCeeeeccc-----C-CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHh--CCCCcceEeccH-
Confidence 457775554 1 34789999999887543222332 22233455553333333332 345566777666
Q ss_pred HHHHHHHHHHhcCCCCEEEecCCCccchHH---HHhhCCC--eEEEeeccCCCCcccCHHHHHHhhc-CCceEEEEeCCC
Q 014603 120 TQAIEVILTVLARPGANILLPRPGFPYYEA---RATHSHL--EVRHFDLLPAKGWEVDLDAVEALAD-ENTVALVIINPG 193 (422)
Q Consensus 120 ~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~---~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p~ 193 (422)
++++..++.+++++||+|+++.|+|+++.. .....|. .++.++.+ +++.+|++.|++.++ ++++++++++|+
T Consensus 97 t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 174 (417)
T 3n0l_A 97 SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKPKLIVCGASA 174 (417)
T ss_dssp HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCCeEEEECCcc
Confidence 899999999999999999999999977544 3333333 34444443 556789999999887 578888888877
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
| |..++ +++|.++|++||+++|+|++|. +..+.+.....+. ...+++.|+||++ +|+|.||+++++
T Consensus 175 ~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-----~~di~~~s~sK~l--~g~~~G~~~~~~- 241 (417)
T 3n0l_A 175 Y--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-----YAHVVSSTTHKTL--RGPRGGIIMTND- 241 (417)
T ss_dssp C--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-----TCSEEEEESSTTT--CSCSCEEEEESC-
T ss_pred c--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-----cceEEEeeCcccc--CCCCeeEEEECC-
Confidence 6 77765 7889999999999999999964 3333333222222 1238899999985 778889999863
Q ss_pred CCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE
Q 014603 273 NGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF 350 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 350 (422)
+++.+.+...... .++++...+.++..++....+..+++..+++.++++.+.+.|++. ++.+...+..+.+
T Consensus 242 ------~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 314 (417)
T 3n0l_A 242 ------EELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHL 314 (417)
T ss_dssp ------HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSE
T ss_pred ------HHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceE
Confidence 4677777665432 234455555565555554233556788888999999999999984 6663322344667
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC------CCeEEEEec------cChHHHHHHHHHHHHHHHHh
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------KDWLRITFA------VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~------~~~iRis~~------~~~~~l~~~~~~l~~~~~~~ 418 (422)
+|+.++... .+..++ ..+++++||.+.++..+.. .+.+|+++. .+++++++++++|++++++.
T Consensus 315 ~~~~~~~~~----~~~~~~-~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 315 VLMSFLDRE----FSGKDA-DLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp EEEECTTSS----SCHHHH-HHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcccCC----CCHHHH-HHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 888775321 134444 4455778999987653321 367999985 35799999999999998754
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=240.89 Aligned_cols=342 Identities=15% Similarity=0.089 Sum_probs=215.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..|.+....+ +.+|.+.+++.+++.......| ..+.+..+++++.+.++ ++++|++++|+++|
T Consensus 50 ~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea 120 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICG-HAHPEVIEALKVAMEKGTSFGA-----PCALENVLAEMVNDAVP---SIEMVRFVNSGTEA 120 (427)
T ss_dssp TSCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHTTCSCCSS-----CCHHHHHHHHHHHHHST---TCSEEEEESSHHHH
T ss_pred CCCEEEECCCchhhhccC-CCCHHHHHHHHHHHHhCCCcCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHH
Confidence 578899999987553222 3689999999999876433223 23555566666655443 57899999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhhC-CCeEEEeeccCCCCcc------------cCHHHHHHhhcC--Cce
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATHS-HLEVRHFDLLPAKGWE------------VDLDAVEALADE--NTV 185 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~------------~d~~~l~~~~~~--~~~ 185 (422)
++.+++... ..+++|++.+++|+++...+... +.....++.....+.. -|++.|++.+++ +..
T Consensus 121 ~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 200 (427)
T 3fq8_A 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEI 200 (427)
T ss_dssp HHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCE
Confidence 999995432 23478999999998765433322 1111101000000100 188999988865 234
Q ss_pred EEEEeCC-CCCcccccC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 186 ALVIINP-GNPCGNVYT-YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 186 ~i~i~~p-~nptG~~~~-~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++++++| +|++|.+.+ .+++++|.++|++||++||+||+|+++ +.|... .....+...+ +.|+||.++ +|+|
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-~~~~~~~~~d---i~t~sK~~~-~G~~ 274 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGG-VQEKFGVTPD---LTTLGKIIG-GGLP 274 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTH-HHHHTTCCCS---EEEECGGGG-TTSS
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-hhHhcCCCCC---hhhhhhhhh-CCcc
Confidence 4555555 667776654 666999999999999999999999977 554321 1122222222 457889987 7999
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----c
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK----E 335 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~ 335 (422)
+||++++ +++++.+... ...+.++++++++++.++|+...+ ++..++++++.+.+++.|+ +
T Consensus 275 ~G~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 343 (427)
T 3fq8_A 275 VGAYGGK--------REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQE 343 (427)
T ss_dssp CEEEEEC--------HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEc--------HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999885 4677666542 122346688999999888875321 2233444444444444444 3
Q ss_pred CCCCCCCCCCCCceEEEEecCccccc--------CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLE--------GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDG 407 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~ 407 (422)
++ +. ...+..|.++++.++..... ......++...+ .++||.+.|+.. ..+|+++.+++++++++
T Consensus 344 ~~-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~----~r~~~~~~~t~e~i~~~ 416 (427)
T 3fq8_A 344 TG-HA-ACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGM-LEQGIYLAPSQF----EAGFTSLAHTEEDIDAT 416 (427)
T ss_dssp TT-CC-CEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTT----SCEECCTTCCHHHHHHH
T ss_pred CC-CC-eEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHH-HHCCcEEecCCC----CCEEeeCcCCHHHHHHH
Confidence 32 22 11234577888887542100 000023455555 556999998753 34566656899999999
Q ss_pred HHHHHHHHHH
Q 014603 408 LGRMKAFYDR 417 (422)
Q Consensus 408 ~~~l~~~~~~ 417 (422)
+++|++++++
T Consensus 417 l~~l~~~l~~ 426 (427)
T 3fq8_A 417 LAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-28 Score=233.80 Aligned_cols=336 Identities=15% Similarity=0.030 Sum_probs=232.2
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC---CCEEEecCHHHHHHHHHHHhcC------
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP---DDVYLTLGCTQAIEVILTVLAR------ 132 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~---~~i~~~~g~~~a~~~~~~~l~~------ 132 (422)
+.++.+.+++.+.+.... ..|....+..++++.+.+++.+.+|.+.+. ..+++|+|+|+|+..++.++..
T Consensus 53 ~~~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~ 131 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131 (452)
T ss_dssp CCCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 455789999988876532 345555567788888888887777644321 2489999999999999887753
Q ss_pred --CC-----CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHH
Q 014603 133 --PG-----ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 133 --~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l 205 (422)
+| ++|++++ +|..+...+...|++++.++.++ +++.+|++.|++.++++++++++++|+||||.+ +++
T Consensus 132 ~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~---~~l 206 (452)
T 2dgk_A 132 EAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY---EFP 206 (452)
T ss_dssp HHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBB---CCH
T ss_pred HhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhhCCEEEEEEcCCcCCccc---CCH
Confidence 45 5999999 99999999999999999998864 357899999999999899999999999999999 568
Q ss_pred HHHHHHHHHc------CcEEEEccccccccc---CCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcc
Q 014603 206 QKIAETAKKL------GIMVIADEVYDHLAF---GNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 276 (422)
Q Consensus 206 ~~i~~~~~~~------~~~li~D~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~ 276 (422)
++|.++|+++ |+++++|++|+.+.. .+.....+. .. .-.+++.|++|+ ++.|+++|+++++++..
T Consensus 207 ~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~--~~d~~~~~~hK~-~~~~~~~G~~~~~~~~~-- 280 (452)
T 2dgk_A 207 QPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFR-LP--RVKSISASGHKF-GLAPLGCGWVIWRDEEA-- 280 (452)
T ss_dssp HHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-ST--TEEEEEEETTTT-TCCCSSCEEEEESSGGG--
T ss_pred HHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcC-CC--CCcEEEECcccc-cCCCCCeEEEEEcCHHH--
Confidence 8888888895 999999999987542 222111111 11 112567788996 77889999999965321
Q ss_pred cchhHHHHHHh---hhh-------hccCc---chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014603 277 QDSGIVDSIKS---FLN-------ISSDP---ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343 (422)
Q Consensus 277 ~~~~~~~~~~~---~~~-------~~~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 343 (422)
+.+.+.. +.. ..++. ..+.++++...+ ....+++..++..++++++.+.|++++++.++
T Consensus 281 ----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~- 352 (452)
T 2dgk_A 281 ----LPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL---GREGYTKVQNASYQVAAYLADEIAKLGPYEFI- 352 (452)
T ss_dssp ----SCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE-
T ss_pred ----HHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-
Confidence 1121110 000 01111 223344443333 34668888999999999999999999777743
Q ss_pred CC----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCC---CCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 344 KP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT---VGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 344 ~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~---~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
.| ....++.++++...... .+..++...| .++||.+..... ....+++|++++ +++++++++++.|+++
T Consensus 353 ~~~~~~~~~~~v~f~~~~~~~~~-~~~~~l~~~L-~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~ 430 (452)
T 2dgk_A 353 CTGRPDEGIPAVCFKLKDGEDPG-YTLYDLSERL-RLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKAS 430 (452)
T ss_dssp EECCTTTBSSEEEEEECTTCCCS-CCHHHHHHHH-HHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCeEEEEEEecCccccc-CCHHHHHHHH-HhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 33 23445556665310000 1336676766 456986543211 112458999998 5789999999999998
Q ss_pred HHHhc
Q 014603 415 YDRHA 419 (422)
Q Consensus 415 ~~~~~ 419 (422)
++++.
T Consensus 431 ~~~~~ 435 (452)
T 2dgk_A 431 LKYLS 435 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-29 Score=240.17 Aligned_cols=332 Identities=17% Similarity=0.151 Sum_probs=235.8
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC---CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS---TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.++.|+ +.+. +..|.+.+++.+... ..+.|.+ ..|..++++.+++++.+.+|.. . .+++++|++++
T Consensus 67 ~~~~lg-~~~~-----~~~p~v~~~~~~~~~--~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~-~~~~~~ggt~a 135 (474)
T 1wyu_B 67 TFYPLG-SCTM-----KYNPKLHEEAARLFA--DLHPYQDPRTAQGALRLMWELGEYLKALTGMD--A-ITLEPAAGAHG 135 (474)
T ss_dssp SCCCBT-TTCC-----CCCCHHHHHHHHTTS--SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHH
T ss_pred Cccccc-cccc-----cCCHHHHHHHHHHHH--hcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--c-eeecChHHHHH
Confidence 467777 4322 334567777766532 2334543 3455677777777777655533 2 46688999999
Q ss_pred HHHHHHHh----cCCCC-----EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 123 IEVILTVL----ARPGA-----NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 123 ~~~~~~~l----~~~gd-----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+..++.++ .++|| +|+++.++|..+...+...|.+++.++.+. ++.+|++.|++.++++++++++++|
T Consensus 136 ~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i~~~t~~v~~~~p- 212 (474)
T 1wyu_B 136 ELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELGPHVAALMLTNP- 212 (474)
T ss_dssp HHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCSTTEEEEEECSS-
T ss_pred HHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhhCCCceEEEEECC-
Confidence 99865554 35777 999999999999999999999999998753 4678999999999888999999998
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCC-C---ceeEEEEe
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVP-G---WRLGWLVT 269 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~-G---~r~G~~~~ 269 (422)
||+|.+. +++++|+++|+++|+++|+|++|....++ ......++. .+++.|+||+|+.| | +|+||+++
T Consensus 213 n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g---~~~~~~~g~---di~~~s~~K~~~~p~g~gG~~~G~~~~ 284 (474)
T 1wyu_B 213 NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG---WARPGDMGF---DVVHLNLHKTFTVPHGGGGPGSGPVGV 284 (474)
T ss_dssp CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT---TCCHHHHTC---SEEECCTTTTTCCCCTTSCCCCCCEEE
T ss_pred CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc---CCCcccCCC---cEEEEeCccccccCCCCCCCCeEEEEE
Confidence 6899873 47899999999999999999999765432 112223333 38888999998766 4 69999999
Q ss_pred eCCCCcccchhHHHHHHh-h-------------------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 270 SDPNGILQDSGIVDSIKS-F-------------------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
++ ++++.+.. . ....++.+.+.+.++..++.....+++++..+++.++++++
T Consensus 285 ~~--------~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l 356 (474)
T 1wyu_B 285 KA--------HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL 356 (474)
T ss_dssp CG--------GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cH--------HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 34443331 0 00112456677777777776544567888899999999999
Q ss_pred HHHhhcCCCCCCCCCCCCceE--EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC--CCCeEEEEec--cChHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--LKDWLRITFA--VEPSA 403 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~--~~~~~ 403 (422)
.+.|+++ ++.+. .+. +.+ +++.++.. .+..++..++++ +||.+ ++..|. ..+++||+++ +++++
T Consensus 357 ~~~L~~~-g~~~~-~~~-~~~~~~~~~~~~~-----~~~~~l~~~L~~-~Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~ 426 (474)
T 1wyu_B 357 KELLKEK-GYRVP-YDG-PSMHEFVAQPPEG-----FRALDLAKGLLE-LGFHP-PTVYFPLIVKEALMVEPTETEAKET 426 (474)
T ss_dssp HHHHHHT-TCBCS-SCS-SCCSCEEEBCSTT-----CCHHHHHHHHHH-TTCCC-CEESCSTTSTTCEEECCCTTSCHHH
T ss_pred HHHHhhc-CcEec-CCC-CcceEEEEEcCCC-----CCHHHHHHHHHH-CCccc-cccccccccCCEEEEEeecCCCHHH
Confidence 9999987 77632 222 222 45555211 256777777755 59985 554443 3689999998 48999
Q ss_pred HHHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYDR 417 (422)
Q Consensus 404 l~~~~~~l~~~~~~ 417 (422)
+++++++|++++++
T Consensus 427 id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 427 LEAFAEAMGALLKK 440 (474)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=242.25 Aligned_cols=333 Identities=15% Similarity=0.087 Sum_probs=222.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|..+|||..|.+....++ .+|.+.+++.+++.......| ..++++.+++.+.+.++ .+++|++++|+++|
T Consensus 50 ~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea 120 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGH-AHPKVLARVRETLERGLTFGA-----PSPLEVALAKKVKRAYP---FVDLVRFVNSGTEA 120 (424)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSS-----CCHHHHHHHHHHHHHCT---TCCEEEEESSHHHH
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHH
Confidence 5778999998865433333 689999999999976422222 23455555555555443 56899999999999
Q ss_pred HHHHHHH---hcCCCCEEEecCCCccchHHHHhh--------------CCC------eEEEeeccCCCCcccCHHHHHHh
Q 014603 123 IEVILTV---LARPGANILLPRPGFPYYEARATH--------------SHL------EVRHFDLLPAKGWEVDLDAVEAL 179 (422)
Q Consensus 123 ~~~~~~~---l~~~gd~Vl~~~~~~~~~~~~~~~--------------~g~------~~~~~~~~~~~~~~~d~~~l~~~ 179 (422)
+..+++. +.+ ++.|++.+|+|+++...+.. .|. .++.++. .|++.|++.
T Consensus 121 ~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~ 192 (424)
T 2e7u_A 121 TMSALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREV 192 (424)
T ss_dssp HHHHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHH
Confidence 9999986 554 48899999999986543321 121 1222221 378899888
Q ss_pred hcC--CceEEEEeCCCCC-ccccc-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 180 ADE--NTVALVIINPGNP-CGNVY-TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 180 ~~~--~~~~i~i~~p~np-tG~~~-~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
+++ +..++++++|+|+ +|.++ +.+++++|.++ ++||+++|+||+|+++ +.|.. .....++...+ +.|+||
T Consensus 193 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~-~~~~~~~~~~d---i~s~sK 266 (424)
T 2e7u_A 193 LKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG-GATELLGLKPD---LVTLGK 266 (424)
T ss_dssp HHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT-HHHHHHTCCCS---EEEECG
T ss_pred HHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh-HHHHHhCCCcc---hhhhhh
Confidence 763 3456777888654 89764 78999999999 9999999999999976 43421 11222222222 338899
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
+++ +|+|+||++++ +++++.+... ...+.+.++++++++.++|+...+ .++..++++++.+++++
T Consensus 267 ~l~-~G~~~G~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~ 335 (424)
T 2e7u_A 267 ILG-GGLPAAAYAGR--------REIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEA 335 (424)
T ss_dssp GGG-TTSSCEEEEEC--------HHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHH
T ss_pred hhh-CCcceEEEEEc--------HHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence 987 59999999986 4666666542 112346778889998888875322 24466677777777777
Q ss_pred HhhcC---CCCCCCCCCCCceEEEEecCccccc--------CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccC
Q 014603 332 RLKEI---PCITCPKKPEGSMFVMVKLNYSLLE--------GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE 400 (422)
Q Consensus 332 ~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~ 400 (422)
.|+++ .++. ...+..|.++|+.++..... ......++...++ ++||.+.|+.. ..+|+++.++
T Consensus 336 ~L~~~~~~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~----~~~~~~~~~t 409 (424)
T 2e7u_A 336 GLKEVLKEKGLP-HTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF----EAAFLSVAHR 409 (424)
T ss_dssp HHHHHHHHTTCC-CEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS----SCEECCTTCC
T ss_pred HHHHHHHhCCCc-eEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC----CceEeeccCC
Confidence 77653 1232 11244567889888631000 0001345555554 67999999752 3477776789
Q ss_pred hHHHHHHHHHHHHHH
Q 014603 401 PSALEDGLGRMKAFY 415 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~ 415 (422)
++++++++++|++++
T Consensus 410 ~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 410 EEDVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998763
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=241.65 Aligned_cols=345 Identities=13% Similarity=0.056 Sum_probs=214.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.++||..+......+ ..+|++.+++.+++.+.....|+ .....++++++++++ + .++++++++||++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG-~~~p~v~~A~~~~~~~~~~~~~~-~~~~~~la~~l~~~~----~---~~~~v~~~~sGsea 121 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILG-HNHPAIRQAVIEAVERGLSFGAP-TEMEVKMAQLVTDLV----P---TMDMVRMVNSGTEA 121 (429)
T ss_dssp TCCEEEESSGGGTTCTTC-BTCHHHHHHHHHHHTTCSCCSSC-CHHHHHHHHHHHHHS----T---TCSEEEEESSHHHH
T ss_pred CCCEEEECCCchhccccC-CCCHHHHHHHHHHHHhCcccCCC-CHHHHHHHHHHHhhC----C---CCCEEEEeCcHHHH
Confidence 588899999887542222 35899999999998764333343 233445555555554 2 57899999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhh-CCCeEE--EeeccCC------CC----cccCHHHHHHhhcC--Cce
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATH-SHLEVR--HFDLLPA------KG----WEVDLDAVEALADE--NTV 185 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~------~~----~~~d~~~l~~~~~~--~~~ 185 (422)
++.+++... ..++.|++.+++|+++...+.. .+.... ..+.... .. ...|++.|++.+++ ...
T Consensus 122 ~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 201 (429)
T 4e77_A 122 TMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEV 201 (429)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCE
Confidence 999998543 2557999999999887542221 111100 0010000 00 00178899988763 345
Q ss_pred EEEEeCCCCCcc-cc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 186 ALVIINPGNPCG-NV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 186 ~i~i~~p~nptG-~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
++++++|+|++| .+ .+.+.+++|.++|++||+++|+||+|.++ +.|.. .....++..++ +.|+||.++ +|+|
T Consensus 202 ~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~-~~~~~~~~~pd---i~t~sK~~~-~G~~ 275 (429)
T 4e77_A 202 ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALA-GAQDYYHVIPD---LTCLGKIIG-GGMP 275 (429)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTT-CHHHHTTCCCS---EEEEEGGGG-TTSC
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcc-hHHHhcCCCCC---eeeeccccc-CCCC
Confidence 677788866554 43 34566999999999999999999999987 54432 12222332222 347899987 7999
Q ss_pred eEEEEeeCCCCcccchhHHHHHHhh----hhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 014603 264 LGWLVTSDPNGILQDSGIVDSIKSF----LNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPC 338 (422)
Q Consensus 264 ~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~ 338 (422)
+||++++ +++++.+... ...+.+.++++++++.++|+... +...++..+.....++.+.+.+.+++
T Consensus 276 ~G~~~~~--------~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 346 (429)
T 4e77_A 276 VGAFGGR--------REVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEEN- 346 (429)
T ss_dssp CEEEEEC--------HHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred eEEEEEC--------HHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 9999985 4677666542 22344778899999998887532 23333333333333444444443443
Q ss_pred CCCCCCCCCceEEEEecCcccc---------cCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHH
Q 014603 339 ITCPKKPEGSMFVMVKLNYSLL---------EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 339 ~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~ 409 (422)
+. ...+..|.++++.++.... .......++...+ .++||.+.|+.. ..+|+++.+++++++++++
T Consensus 347 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~----~~~~~~~~~t~e~i~~~l~ 420 (429)
T 4e77_A 347 IP-LVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLM-LEEGVYLAPSAF----EAGFMSLAHSNEDIQKTVN 420 (429)
T ss_dssp CC-CEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHH-HHTTEECCSSTT----SCEECCTTCCHHHHHHHHH
T ss_pred Cc-eEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHH-HHCCeEEeecCC----CCEEEeccCCHHHHHHHHH
Confidence 22 1134457788888864200 0000114555655 456999998752 3567776689999999999
Q ss_pred HHHHHHHH
Q 014603 410 RMKAFYDR 417 (422)
Q Consensus 410 ~l~~~~~~ 417 (422)
+|++++++
T Consensus 421 ~l~~~l~~ 428 (429)
T 4e77_A 421 AARRCFAK 428 (429)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99998754
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=243.52 Aligned_cols=336 Identities=14% Similarity=0.123 Sum_probs=222.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHH-H-HHHH---HhhCCCC--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAV-D-AIVH---SVRSARF--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL 115 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~-~-a~~~---~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~ 115 (422)
+|..++||..+.+....++ .+|.+. + ++.+ ++..... ..|.. ....++++.+++++. ...+++|++
T Consensus 52 ~g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~la~~la~~~~-----~~~~~~v~~ 124 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGM-NPPALVDDREFHAELMQAALNKPSNSDVYS-VAMARFVETFARVLG-----DPALPHLFF 124 (449)
T ss_dssp TCCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHHHHHHHTCCCCTTTCCC-HHHHHHHHHHHHHHC-----CTTCCEEEE
T ss_pred CCcEEEEccCCccccCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCcccCC-HHHHHHHHHHHHhcC-----CCCCCEEEE
Confidence 5677889877765422222 479999 8 9999 7765321 11221 223455666666652 246789999
Q ss_pred ecCHHHHHHHHHHHhc---C----------C-CCEEEecCCCccchHHHHhhC-C--------C-----eEEEeeccCCC
Q 014603 116 TLGCTQAIEVILTVLA---R----------P-GANILLPRPGFPYYEARATHS-H--------L-----EVRHFDLLPAK 167 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~---~----------~-gd~Vl~~~~~~~~~~~~~~~~-g--------~-----~~~~~~~~~~~ 167 (422)
++|+++|++.+++.+. . + ||+|++.+|+|+++...+... + . ++..++.+...
T Consensus 125 ~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 204 (449)
T 2cjg_A 125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPG 204 (449)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTT
T ss_pred eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCch
Confidence 9999999999987542 2 2 899999999998865433221 1 1 34444442200
Q ss_pred Cc--------ccCHHHHHHhhc---CCceEEEEeCC-CCCcc-cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC
Q 014603 168 GW--------EVDLDAVEALAD---ENTVALVIINP-GNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP 234 (422)
Q Consensus 168 ~~--------~~d~~~l~~~~~---~~~~~i~i~~p-~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~ 234 (422)
.. ..+++.|++.++ +++++ ++++| +||+| ..++.+++++|.++|++||+++|+||+|+++.+.|..
T Consensus 205 ~~~~~~~~~~~~~~~~le~~i~~~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~ 283 (449)
T 2cjg_A 205 LDEPAMAALEAEALRQARAAFETRPHDIAC-FVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTA 283 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTTEEE-EEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred hhccccchhhHHHHHHHHHHHHhcCCceEE-EEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcc
Confidence 11 235566888774 44554 55666 68999 5889999999999999999999999999987776642
Q ss_pred CCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH-----h-hhhhccCcchHHHHHHHHHHh
Q 014603 235 FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK-----S-FLNISSDPATFIQGAVPQILE 308 (422)
Q Consensus 235 ~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~a~~~~l~ 308 (422)
..+...+..+++ .|+||.+ |+||+++++ ++++.+. . ....+.+++++++.++.++|+
T Consensus 284 -~~~~~~~~~~di---~t~sK~l-----~iG~~~~~~--------~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~ 346 (449)
T 2cjg_A 284 -WAYQQLDVAPDI---VAFGKKT-----QVCGVMAGR--------RVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILE 346 (449)
T ss_dssp -STHHHHTCCCSE---EEECGGG-----SSEEEEECG--------GGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred -eeecccCCCceE---EEecCcc-----cEEEEEECH--------HHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHH
Confidence 122222222232 3678986 689999863 4544311 1 122345678899999999887
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhc----CCC-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec
Q 014603 309 KTEEEFFSKITDILRETADICCDRLKE----IPC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP 383 (422)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 383 (422)
...+ ++..++++++++++.+.|++ ++. +. . .+..|.++++.++... ...++...++ ++||.+.|
T Consensus 347 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~-~~~~g~~~~~~~~~~~-----~~~~~~~~l~-~~Gv~v~~ 415 (449)
T 2cjg_A 347 VIEA---EGLFERAVQHGKYLRARLDELAADFPAVVL-D-PRGRGLMCAFSLPTTA-----DRDELIRQLW-QRAVIVLP 415 (449)
T ss_dssp HHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSE-E-EEEETTEEEEECSSHH-----HHHHHHHHHH-HTTEECEE
T ss_pred HHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCcee-e-EeeccEEEEEEECChH-----HHHHHHHHHH-HCCeEEec
Confidence 5332 34556677777777777765 343 33 2 2234667777776321 2456667665 56999998
Q ss_pred CCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 384 GITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 384 g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+. .+++|++++ ++++++++++++|+++++++
T Consensus 416 ~g----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 416 AG----ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp ET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 73 589999775 78999999999999998764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=233.54 Aligned_cols=286 Identities=15% Similarity=0.129 Sum_probs=202.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~ 163 (422)
...+++++++++. ..+++++++||++|+..++.+++++||+|+++.|+|+++...+. ..|.+++.++.
T Consensus 82 ~~~~l~~~la~~~--------g~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 153 (414)
T 3ndn_A 82 TVSVFEERLRLIE--------GAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG 153 (414)
T ss_dssp HHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHHH--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC
Confidence 3456777777766 23678999999999999999999999999999999998766654 48999888875
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
+ |++.|+++++++++++++++|+||+|.+. ++++|+++|+++|+++|+|++|....+. .++ ..+.
T Consensus 154 ~-------d~~~l~~ai~~~t~~v~le~p~NptG~~~---~l~~i~~la~~~g~~livDe~~~~~~~~----~~~-~~g~ 218 (414)
T 3ndn_A 154 D-------DLSQWERALSVPTQAVFFETPSNPMQSLV---DIAAVTELAHAAGAKVVLDNVFATPLLQ----QGF-PLGV 218 (414)
T ss_dssp T-------CHHHHHHHTSSCCSEEEEESSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTHHHHC----CCG-GGTC
T ss_pred C-------CHHHHHHhcCCCCeEEEEECCCCCCCccc---cHHHHHHHHHHcCCEEEEECCCcccccC----Cch-hcCC
Confidence 2 78999999998999999999999999995 4788999999999999999999743211 122 2222
Q ss_pred CCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHH-HHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVD-SIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
.+++.|+||.++++| +++|++++++ +.+. .++.... .....++...+++...++. +..+.+
T Consensus 219 ---div~~S~sK~l~~~G~~~~G~vv~~~--------~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~r~~ 282 (414)
T 3ndn_A 219 ---DVVVYSGTKHIDGQGRVLGGAILGDR--------EYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET-----LAIRVQ 282 (414)
T ss_dssp ---SEEEEETTTTTTCSSCCCCEEEEECH--------HHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG-----HHHHHH
T ss_pred ---CeEeccCCccccCCCCceEEEEEECH--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----HHHHHH
Confidence 388999999998888 8999999863 3443 4543332 3334555655555555543 555667
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
+..++++.+.+.|++.|.+..+..|. .|.++++.++............++..+ +..++.+..|
T Consensus 283 ~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l-~~~~~~~s~G 361 (414)
T 3ndn_A 283 HSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKM-RLIDISNNLG 361 (414)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHC-SSSEECSCCS
T ss_pred HHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhC-ccceEcCCCC
Confidence 77788889999999887754333332 466888888631000000233444433 4556667666
Q ss_pred CCCC-----------------------CCCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 385 ITVG-----------------------LKDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 385 ~~~~-----------------------~~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
..+. .++++|+|++. |+.+.+++.|++++
T Consensus 362 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 362 DAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp CSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 5431 15789999985 45566666666665
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-28 Score=232.55 Aligned_cols=334 Identities=13% Similarity=0.104 Sum_probs=211.3
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHH----HHHHHHHhhcCCCCCCCCCEEE
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPAR----RAIADYLNRDLPYKLSPDDVYL 115 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr----~~ia~~l~~~~~~~~~~~~i~~ 115 (422)
..++|..+. + +.+|.+.+++.+++.+.....|+ .....+.++ +.+++++ +.+. ..++
T Consensus 33 ~~i~l~~~~-----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~~-~~v~ 99 (425)
T 3ecd_A 33 SQVELIASE-----N-IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF------NAGH-ANVQ 99 (425)
T ss_dssp HSEECCTTC-----C-CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH------TCSE-EECC
T ss_pred cceeeeccc-----C-CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh------CCCC-ceee
Confidence 457776554 1 33799999999988542211222 111111222 3344444 2222 2345
Q ss_pred ecCHHHHHHHHHHHhcCCCCEEEecCCCccc---hHHHHhhCCC--eEEEeeccCCCCcccCHHHHHHhhc-CCceEEEE
Q 014603 116 TLGCTQAIEVILTVLARPGANILLPRPGFPY---YEARATHSHL--EVRHFDLLPAKGWEVDLDAVEALAD-ENTVALVI 189 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i 189 (422)
++||++++..++.+++++||+|+++.|+|++ +.......|. .++.++.++ +++.+|++.|++.++ ++++++++
T Consensus 100 ~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~ 178 (425)
T 3ecd_A 100 PHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTMLIDYDQVEALAQQHKPSLIIA 178 (425)
T ss_dssp CSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred cCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-ccCccCHHHHHHHHhhcCCcEEEE
Confidence 8899999999999999999999999999987 2222223444 344454432 346799999999886 57899999
Q ss_pred eCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 190 INPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 190 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
++|+||+ . .++++|.++|+++|+++|+||+|. ++.+.+.....+.. . .+++.|+||++ +|+|.||++
T Consensus 179 ~~~~~~~--~---~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~--~---di~~~s~sK~l--~g~~~g~~~ 246 (425)
T 3ecd_A 179 GFSAYPR--K---LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEH--A---HVVTSTTHKTL--RGPRGGFVL 246 (425)
T ss_dssp ECSCCCS--C---CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT--C---SEEEEESSGGG--CCCSCEEEE
T ss_pred ccccCCC--c---CCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhc--C---cEEEecCCccc--CCCCcEEEE
Confidence 9999864 3 457899999999999999999964 33334432222221 1 28899999996 677899999
Q ss_pred eeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 346 (422)
+++ +++.+.+...... .++++...+.++..++....+.++++..++++++++.+.+.|++. ++.+...+.
T Consensus 247 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 318 (425)
T 3ecd_A 247 TND-------EEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGT 318 (425)
T ss_dssp ESC-------HHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred eCC-------HHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCC
Confidence 864 3566666554432 224444444544445543333567788889999999999999985 666332234
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe----cCCCCC--CCCeEEEEec------cChHHHHHHHHHHHHH
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITVG--LKDWLRITFA------VEPSALEDGLGRMKAF 414 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~~~--~~~~iRis~~------~~~~~l~~~~~~l~~~ 414 (422)
.+.++|+.++... .+...+ ...++++||.+. ||..+. ..+.+|++++ .++++++++++.|+++
T Consensus 319 ~~~~~~~~~~~~~----~~~~~~-~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 319 DNHLLLVDLRPKG----LKGAQV-EQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp SSSEEEEECGGGT----CCHHHH-HHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCC----CCHHHH-HHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence 5778888875421 134444 445577899999 443221 2468999965 2489999999999999
Q ss_pred HHHh
Q 014603 415 YDRH 418 (422)
Q Consensus 415 ~~~~ 418 (422)
+++.
T Consensus 394 l~~~ 397 (425)
T 3ecd_A 394 FEAL 397 (425)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8775
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-28 Score=227.61 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=223.7
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh---cCCCCEEE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL---ARPGANIL 138 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l---~~~gd~Vl 138 (422)
++++.+.+++.+.+.... |.+.....++|+.++++++ . +++++++|+++|+..++.++ +++||+|+
T Consensus 10 ~~~~~v~~a~~~~~~~~~---~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl 78 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQ---LTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFSADRNEII 78 (375)
T ss_dssp CCCHHHHHHHHHHHTSSC---CSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred CCCHHHHHHHHHHHHcCc---ccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEE
Confidence 467899999999986532 3344567899999999993 2 38999999999999999999 88999999
Q ss_pred ecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcE
Q 014603 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIM 218 (422)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~ 218 (422)
++.|+|+++...+...|.+++.+++++. ..+|++.|++.++++++++++++| ||.+.+ +++|.++|+++|++
T Consensus 79 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~ 150 (375)
T 2fnu_A 79 TTPISFVATANMLLESGYTPVFAGIKND--GNIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKHSLS 150 (375)
T ss_dssp ECSSSCTHHHHHHHHTTCEEEECCBCTT--SSBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHHTCE
T ss_pred ECCCccHhHHHHHHHCCCEEEEeccCCC--CCCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHcCCE
Confidence 9999999999999999999999988653 268999999998888888888877 999865 78888999999999
Q ss_pred EEEcccccccccCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc----
Q 014603 219 VIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS---- 292 (422)
Q Consensus 219 li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 292 (422)
+|+|++|+.+..... ..+..++ .+.+.|+| |+++. | +|++++.+. +++.+++.......
T Consensus 151 li~D~a~~~~~~~~~--~~~~~~~----~i~~~s~s~~K~~~~-g--~g~~~~~~~------~~~~~~~~~~~~~~~~~~ 215 (375)
T 2fnu_A 151 FLSDSSHALGSEYQN--KKVGGFA----LASVFSFHAIKPITT-A--EGGAVVTND------SELHEKMKLFRSHGMLKK 215 (375)
T ss_dssp EEEECTTCTTCEETT--EETTSSS----SEEEEECCTTSSSCC-S--SCEEEEESC------HHHHHHHHHHTBTTEEES
T ss_pred EEEECccccCCeECC--eeccccC----CeEEEeCCCCCCccc-c--CceEEEeCC------HHHHHHHHHHHhcCCccc
Confidence 999999986432110 1122111 27777888 99754 6 788877421 45666666543211
Q ss_pred ----------c---CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----CCceEEEEe
Q 014603 293 ----------S---DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP-----EGSMFVMVK 354 (422)
Q Consensus 293 ----------~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~g~~~~~~ 354 (422)
+ ..+.+..++....+ .++++..++.+++++++.+.|+++|++.+. .+ ..+.++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~ 289 (375)
T 2fnu_A 216 DFFEGEVKSIGHNFRLNEIQSALGLSQL-----KKAPFLMQKREEAALTYDRIFKDNPYFTPL-HPLLKDKSSNHLYPIL 289 (375)
T ss_dssp SSSCEEESSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTCSSEEES-GGGCSSCCCCSCEEEE
T ss_pred cccccccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCcccc-CCCCCCCcceEEEEEE
Confidence 1 12222222222222 346778888999999999999998877633 33 123445666
Q ss_pred cCcccccCCCCHHHHHHHHHHhcCeEEecCCC-------CC-------C-------CCeEEEEec--cChHHHHHHHHHH
Q 014603 355 LNYSLLEGINSDMEFALKLAKEESVIVLPGIT-------VG-------L-------KDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-------~~-------~-------~~~iRis~~--~~~~~l~~~~~~l 411 (422)
++.... .+..++...| .++||.+..+.. |+ . .+++||+++ ++++++++++++|
T Consensus 290 ~~~~~~---~~~~~l~~~L-~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l 365 (375)
T 2fnu_A 290 MHQKFF---TCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSV 365 (375)
T ss_dssp ECGGGG---GGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred eCcccc---chHHHHHHHH-HHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHH
Confidence 653100 0245666665 567999983221 11 1 267999998 5899999999999
Q ss_pred HHHHHHh
Q 014603 412 KAFYDRH 418 (422)
Q Consensus 412 ~~~~~~~ 418 (422)
+++++++
T Consensus 366 ~~~~~~~ 372 (375)
T 2fnu_A 366 LKTFESF 372 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998765
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=226.07 Aligned_cols=281 Identities=20% Similarity=0.196 Sum_probs=199.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEe
Q 014603 86 TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLEVRHF 161 (422)
Q Consensus 86 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~ 161 (422)
.....++++.++++++ . ++.+++++|++|++.++.+++++||+|+++.++|+++...+ ...|.+++.+
T Consensus 64 ~~~~~~l~~~la~~~g------~--~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (398)
T 1gc0_A 64 NPTLNLLEARMASLEG------G--EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 135 (398)
T ss_dssp CHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred ChHHHHHHHHHHHHhC------C--CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 3456788999999883 2 25666777789999999999999999999999999876655 5678888877
Q ss_pred eccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 162 DLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 162 ~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
+. .|++.+++.++++++++++++|+||||.+++ +++|.++|+++|+++|+|++|..+.+.. ++ ..
T Consensus 136 ~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~----~~-~~ 200 (398)
T 1gc0_A 136 DM-------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR----PL-EL 200 (398)
T ss_dssp CT-------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC----GG-GG
T ss_pred CC-------CCHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hh
Confidence 64 2789999999889999999999999999974 8888999999999999999998654321 22 22
Q ss_pred CCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHH-HHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVD-SIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSK 317 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~ 317 (422)
+ ..+++.|+||.++++|.|+ |++++++ +.+. .+...... .++.+++.++++.+.++. +..
T Consensus 201 ~---~d~~~~S~sK~~~~~~~~~~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~ 264 (398)
T 1gc0_A 201 G---ADLVVHSATKYLSGHGDITAGIVVGSQ--------ALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----LNL 264 (398)
T ss_dssp T---CSEEEEETTTTTTCSSSCCCEEEEECH--------HHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----HHH
T ss_pred C---ceEEEECCccccCCCCCCeEEEEEECh--------HHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-----HHH
Confidence 2 3488999999999999998 9988853 4443 45544432 346777888887777764 344
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--------------CCCCC--CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEE
Q 014603 318 ITDILRETADICCDRLKEIPCI--------------TCPKK--PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 381 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~~~~--------------~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v 381 (422)
+.++..++.+.+.+.|++++.+ .+... +..+.++.+.++. ..+....++++.++.+
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~l~~~~i~~ 336 (398)
T 1gc0_A 265 RMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--------GIGAGRRFMNALQLFS 336 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--------HHHHHHHHHHHCSSSE
T ss_pred HHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--------CHHHHHHHHHhCCCce
Confidence 5556666677777777665432 21100 1234555566642 2334556667778877
Q ss_pred ec---CCC------C----------------CC-CCeEEEEec--cChHHHHHHHHHHHH
Q 014603 382 LP---GIT------V----------------GL-KDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 382 ~~---g~~------~----------------~~-~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
.. |+. + +. ++.+|+|++ .++++++.+.+.|++
T Consensus 337 ~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 337 RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 65 321 0 11 479999998 446677776666654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=231.20 Aligned_cols=325 Identities=15% Similarity=0.137 Sum_probs=222.5
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC-CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS-STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
...++++|+.+.|. .++++.+++.+.+... .|. +..+..++|+.++++++ .+++++++||++
T Consensus 20 ~~~~~~~l~~~~p~------~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~ 82 (391)
T 3dr4_A 20 HMSDLPRISVAAPR------LDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTT 82 (391)
T ss_dssp --------CCCCCC------CCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHH
T ss_pred hcCCCceeccCCCC------CCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHH
Confidence 34678899988854 2367888888887653 344 56778999999999993 237899999999
Q ss_pred HHHHHHHHh-cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCccccc
Q 014603 122 AIEVILTVL-ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 122 a~~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~ 200 (422)
|++.++.++ +++||+|+++.|+|+++...+...|.+++.+++++ +++.+|++.+++.+++++++++ ++||||...
T Consensus 83 al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~ 158 (391)
T 3dr4_A 83 ALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP-RTFNLDAAKLEALITPRTKAIM---PVHLYGQIC 158 (391)
T ss_dssp HHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCC
T ss_pred HHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCc-cccCcCHHHHHHhcCCCceEEE---EECCCCChh
Confidence 999999999 89999999999999999999999999999999864 3567899999999988887776 568999984
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCccc
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQ 277 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~ 277 (422)
++++|.++|+++|+++|+|++|+... +.+. ....+. + +.+.||| |++ +|.+.|++++++
T Consensus 159 ---~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~~~-d---i~~~S~s~~K~l--~~g~gg~~~~~~------ 220 (391)
T 3dr4_A 159 ---DMDPILEVARRHNLLVIEDAAEAVGATYRGK---KSGSLG-D---CATFSFFGNAII--TTGEGGMITTND------ 220 (391)
T ss_dssp ---CHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSS-S---EEEEECBTTSSS--CCBSCEEEEESC------
T ss_pred ---hHHHHHHHHHHcCCEEEEECcccccceECCe---eecccC-C---EEEEECCCCCcC--CcCCeEEEEECC------
Confidence 57888999999999999999998522 2221 111221 1 6677766 764 445688888864
Q ss_pred chhHHHHHHhhhhhccC-------------cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014603 278 DSGIVDSIKSFLNISSD-------------PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 344 (422)
+++.+++......... .......++..... ...+++..++.+++.+.+.+.|+++ ++.+...
T Consensus 221 -~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 295 (391)
T 3dr4_A 221 -DDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQ---LERVDEHLAARERVVGWYEQKLARL-GNRVTKP 295 (391)
T ss_dssp -HHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECC
T ss_pred -HHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCc
Confidence 4566666554321110 11112222222221 2345667788888888999999987 6663322
Q ss_pred --CC----CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC---C-----------------CCCeEEEEec
Q 014603 345 --PE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV---G-----------------LKDWLRITFA 398 (422)
Q Consensus 345 --~~----~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~---~-----------------~~~~iRis~~ 398 (422)
+. ....+++.++.. .+ .+..++...+ .++||.+.+|... . ....+|+++.
T Consensus 296 ~~~~~~~~~~~~~~i~~~~~--~~-~~~~~l~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 371 (391)
T 3dr4_A 296 HVALTGRHVFWMYTVRLGEG--LS-TTRDQVIKDL-DALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTH 371 (391)
T ss_dssp CCCTTSCCCCSSEEEEECSS--CS-SCHHHHHHHH-HHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCC
T ss_pred CCCCCCcceeEEEEEEECCc--cc-hhHHHHHHHH-HHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCC
Confidence 11 122345555531 01 2466676666 5569999988521 0 0357899987
Q ss_pred --cChHHHHHHHHHHHHHH
Q 014603 399 --VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 399 --~~~~~l~~~~~~l~~~~ 415 (422)
++++|++++++.|++++
T Consensus 372 ~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 372 AGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp TTCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 78999999999988653
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=233.94 Aligned_cols=324 Identities=11% Similarity=0.048 Sum_probs=216.1
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC-CCCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEE-ecCHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA-RFNCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYL-TLGCT 120 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-~~g~~ 120 (422)
+.+++|+.|. .++++.+++++.+..... ....+.+. ....++|+.+++++ |.. ++++|++ |+|++
T Consensus 39 ~~~~~~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~~i~~~t~g~t 107 (398)
T 2fyf_A 39 PRDGRFGSGP------SKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELF----SLP-DGYEVILGNGGAT 107 (398)
T ss_dssp CSSCBCCSSS------CCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHT----TCC-TTCEEEEEETCHH
T ss_pred cCCccccCCC------CCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEeCCchh
Confidence 4456776553 367789999887732110 00122221 12345666666666 322 3468998 99999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCccc-hHHHHhhC--CCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcc
Q 014603 121 QAIEVILTVLARPGANILLPRPGFPY-YEARATHS--HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCG 197 (422)
Q Consensus 121 ~a~~~~~~~l~~~gd~Vl~~~~~~~~-~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG 197 (422)
++++.++.+++++| .+++..+.|.. ....+... |.+++.++.+ +++..+. .++++++++++++|+||||
T Consensus 108 ~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~~~v~~~~~~nptG 179 (398)
T 2fyf_A 108 AFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-----QTDPSVDVIAWAHNETSTG 179 (398)
T ss_dssp HHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-----CCCTTCSEEEEESEETTTT
T ss_pred HHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-----cccCCCCEEEEeCcCCCcc
Confidence 99999999998887 22333333321 12234555 7788888765 2322332 2466789999999999999
Q ss_pred cccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCccc
Q 014603 198 NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ 277 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~ 277 (422)
.+++.+++.++ +|+++|+|++|+.+.. ..++. + ..+++.|+||+++++| ++||++++
T Consensus 180 ~~~~~~~i~~~------~~~~vivD~a~~~~~~----~~~~~--~---~di~~~s~sK~~~~~g-g~g~l~~~------- 236 (398)
T 2fyf_A 180 VAVAVRRPEGS------DDALVVIDATSGAGGL----PVDIA--E---TDAYYFAPQKNFASDG-GLWLAIMS------- 236 (398)
T ss_dssp EECCCCCCTTC------C-CEEEEECTTTTTTS----CCCGG--G---CSEEEECTTSTTCSCS-SEEEEEEC-------
T ss_pred eecchHHhhhh------cCCeEEEEeccccCCc----ccCcc--c---CcEEEEecCcccCCCC-ceEEEEEC-------
Confidence 99987776665 7999999999986431 11222 1 2378899999988875 59999886
Q ss_pred chhHHHHHHhh----------------------hhhccCcchHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHhh
Q 014603 278 DSGIVDSIKSF----------------------LNISSDPATFIQGAVPQILEKTEEEF-FSKITDILRETADICCDRLK 334 (422)
Q Consensus 278 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L~ 334 (422)
++++++++.. ....++++...+.++.++++...+.. +++..++++++++.+.+.|+
T Consensus 237 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~ 315 (398)
T 2fyf_A 237 -PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQ 315 (398)
T ss_dssp -HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 4566665321 01123566677777777887533333 78889999999999999999
Q ss_pred cCCCCCCCC-CC--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 335 EIPCITCPK-KP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 335 ~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
+++++.+.. .| ..+.++|+.++.. .+..++...|.+ +||.+.+|......+++||+++ +++++++++++
T Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~-~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~ 389 (398)
T 2fyf_A 316 ERPYTTPFVTDPGLRSQVVGTIDFVDD-----VDAGTVAKILRA-NGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTE 389 (398)
T ss_dssp HSTTEEESCCSGGGBCSSEEEEEECTT-----SCHHHHHHHHHH-TTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHH
T ss_pred HcCCceeccCChhhcCCcEEEEECCCC-----CCHHHHHHHHHH-CCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHH
Confidence 987776332 24 2344888888532 256677777655 4999998743222579999998 68999999999
Q ss_pred HHHHHHHH
Q 014603 410 RMKAFYDR 417 (422)
Q Consensus 410 ~l~~~~~~ 417 (422)
+|++++++
T Consensus 390 ~l~~~l~~ 397 (398)
T 2fyf_A 390 CVDWVVER 397 (398)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=231.38 Aligned_cols=367 Identities=14% Similarity=0.075 Sum_probs=247.7
Q ss_pred HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCC
Q 014603 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107 (422)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~ 107 (422)
...++..+...+. .++.+.+++..-.+ .++++.+.+++.+.+..... .|....+..++++.+.+++.+.+|.+
T Consensus 39 ~~~~~~~~~~~i~-l~gnp~~~l~s~~t-----~~~~~~v~~~l~~~~~~~~~-~~~~~p~~~~le~~~~~~la~l~g~~ 111 (502)
T 3hbx_A 39 KEAAYQIINDELM-LDGNPRLNLASFVT-----TWMEPECDKLIMSSINKNYV-DMDEYPVTTELQNRCVNMIAHLFNAP 111 (502)
T ss_dssp HHHHHHHHHHHGG-GSCCGGGBTTCCSC-----CCCCHHHHHHHHHTTTCBTT-CTTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhc-cCCCCCceeccccC-----CCCCHHHHHHHHHHhccCCC-ChhcChhHHHHHHHHHHHHHHHhCCC
Confidence 4555544443332 24566666654222 25678899999988765322 34344446788888888888777755
Q ss_pred CCCCCEE---EecCHHHHHHHHHHHhcCC--------CC-----EEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 108 LSPDDVY---LTLGCTQAIEVILTVLARP--------GA-----NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 108 ~~~~~i~---~~~g~~~a~~~~~~~l~~~--------gd-----~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
.++++++ +|+|+++++..++.++..+ |+ +|+++.++|..+...++..|++++.+++++ +++.+
T Consensus 112 ~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~ 190 (502)
T 3hbx_A 112 LEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVM 190 (502)
T ss_dssp CCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSC
T ss_pred cccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcC
Confidence 4355443 5899999999998877554 76 999999999999999999999999999754 34779
Q ss_pred CHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc------CcEEEEccccccccc---CCCCCCCccccC
Q 014603 172 DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL------GIMVIADEVYDHLAF---GNTPFVPMGVFG 242 (422)
Q Consensus 172 d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~D~~~~~~~~---~~~~~~~~~~~~ 242 (422)
|++.|++.++++++++++++|+||||.+ +++++|.++|+++ |+++++|++|+.+.. .+.....+...
T Consensus 191 d~~~l~~~i~~~t~~v~~~~~~n~tG~~---~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~- 266 (502)
T 3hbx_A 191 DPQQAVDMVDENTICVAAILGSTLNGEF---EDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLP- 266 (502)
T ss_dssp CHHHHHHHCCTTEEEEEEEBSCTTTCCB---CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST-
T ss_pred CHHHHHHHHhhCCEEEEEecCCCCCCcc---cCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCC-
Confidence 9999999999999999999999999999 4577888888898 999999999986531 22222222211
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH---hhhh-------hccCcchHHHHHHHHHHhhchH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK---SFLN-------ISSDPATFIQGAVPQILEKTEE 312 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~a~~~~l~~~~~ 312 (422)
.-.++..|.+|+ +..+.++|++++.++... .+.+. .+.. ..++.+.....+...++.....
T Consensus 267 --~~D~v~~s~hK~-l~~p~g~G~~~~~~~~~l------~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~ 337 (502)
T 3hbx_A 267 --LVKSINVSGHKY-GLVYAGIGWVIWRNKEDL------PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH 337 (502)
T ss_dssp --TEEEEEEETTTT-TCCCSSCEEEEESSGGGS------CGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH
T ss_pred --CceEEEECcccc-cCCCCCeEEEEEeCHHHh------hHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH
Confidence 113667789998 556677999988653211 01110 0000 0012222222333333433334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---
Q 014603 313 EFFSKITDILRETADICCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--- 388 (422)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--- 388 (422)
..+.++.++..++++++.+.|++++++.++ .+ ....++.++++... . .+..++...| .++|+.+.....+.
T Consensus 338 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~~~v~f~~~~~~--~-~~~~~l~~~L-~~~Gi~v~~~~~p~~~~ 412 (502)
T 3hbx_A 338 EGYRNVMENCRENMIVLREGLEKTERFNIV-SKDEGVPLVAFSLKDSS--C-HTEFEISDML-RRYGWIVPAYTMPPNAQ 412 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEC-SCSSSSSEEEEEESSCS--S-CCHHHHHHHH-HTTTCBCCEEECCTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEE-eCCCCceEEEEEecCCC--c-CCHHHHHHHH-HhCCcEEeeccCCcccC
Confidence 567888888999999999999999878744 33 34556667775321 0 1345666665 56799875433221
Q ss_pred CCCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 389 LKDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 389 ~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
...++||+++ ++.++++.+++.|+++++++.+
T Consensus 413 ~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 413 HITVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2358999998 6899999999999999987654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=223.27 Aligned_cols=308 Identities=17% Similarity=0.157 Sum_probs=212.4
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
++.++.+.+++. ... ...|... ....++|+.++++++ .+++++++|+++|++.++.+++++||+|+
T Consensus 32 ~~~~~~~~~~~~---~~~-~~~y~~~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~al~~l~~~gd~vi 99 (412)
T 2cb1_A 32 FKTLEEGQERFA---TGE-GYVYARQKDPTAKALEERLKALEG--------ALEAVVLASGQAATFAALLALLRPGDEVV 99 (412)
T ss_dssp CSSHHHHHHHHH---HCC-SCSBTTTCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTCEEE
T ss_pred cCChHHHHHHhc---ccc-CcCcCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 566666766654 222 2356543 457889999999983 24899999999999999999999999999
Q ss_pred ecCCCccchHHH----HhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 139 LPRPGFPYYEAR----ATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 139 ~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
++.|+|++.... ++..|.+++.++. |++.|++.++++++++++++|+||+|.+++ +++|.++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~ 168 (412)
T 2cb1_A 100 AAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEE 168 (412)
T ss_dssp EETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHH
T ss_pred EeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHH
Confidence 999999875544 3457888887763 488999999889999999999999999974 8889999999
Q ss_pred cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCc------cc-----------
Q 014603 215 LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI------LQ----------- 277 (422)
Q Consensus 215 ~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~------~~----------- 277 (422)
+|+++|+|++|+.+.+.. .+. ..+ ..+++.|+||+++++|.|+|++++.+.... +.
T Consensus 169 ~~~~li~D~~~~~~~~~~---~~~-~~~---~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 241 (412)
T 2cb1_A 169 AGVALVVDNTFGAAGALC---RPL-AWG---AHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWE 241 (412)
T ss_dssp HTCEEEEECGGGTTTTSC---CGG-GGT---CSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HH
T ss_pred cCCEEEEECCCccccccC---Ccc-ccC---CeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhh
Confidence 999999999998752111 111 122 348999999999999999999987653210 00
Q ss_pred ---chhHHHHHHhhh-hhc-cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-------
Q 014603 278 ---DSGIVDSIKSFL-NIS-SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP------- 345 (422)
Q Consensus 278 ---~~~~~~~~~~~~-~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------- 345 (422)
..++.+.++... ... ...++...+.+...++. +....++..++.+.+.+.|++.+++..+..|
T Consensus 242 ~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~ 316 (412)
T 2cb1_A 242 ALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-----VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPA 316 (412)
T ss_dssp HHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTT
T ss_pred ccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence 003444444433 211 12344444444444543 3455566678888999999988877633223
Q ss_pred ---------CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC---------CCC----------------C-C
Q 014603 346 ---------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI---------TVG----------------L-K 390 (422)
Q Consensus 346 ---------~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~---------~~~----------------~-~ 390 (422)
..+.++.+.+ . +..+ +..++++.||.+ .++ .|. . +
T Consensus 317 ~~~~~~~~~~~~~iv~~~~-~-------~~~~-~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~ 386 (412)
T 2cb1_A 317 HRNARKYLASGGPILTLDL-G-------DLER-ASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTP 386 (412)
T ss_dssp HHHHHHHCSSSCSEEEEEC-S-------SHHH-HHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCT
T ss_pred HHHHHHhCCCCceEEEEEe-C-------CHHH-HHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCC
Confidence 2344556666 2 2333 445567789998 763 221 1 5
Q ss_pred CeEEEEec--cChHHHHHHHHHHHH
Q 014603 391 DWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 391 ~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
+.+|+|++ +++++++.+++.|++
T Consensus 387 ~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 387 GLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CeEEEEeccCCHHHHHHHHHHHHhh
Confidence 78999998 556788777777653
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=232.80 Aligned_cols=337 Identities=16% Similarity=0.090 Sum_probs=221.9
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC---CCCHHHH--HHHH-HHHhhcCCCCCCCCCEEE-ecC
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST---VGILPAR--RAIA-DYLNRDLPYKLSPDDVYL-TLG 118 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g~~~lr--~~ia-~~l~~~~~~~~~~~~i~~-~~g 118 (422)
+.|+|..+. + +.+|.+.+++.+.+.+.....|+.. .+....+ +.++ +++.+.+| .+ .+.+ ++|
T Consensus 46 ~~i~l~~~~-~-----~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g--~~--~~~v~~~s 115 (447)
T 3h7f_A 46 DTLEMIASE-N-----FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG--AE--FANVQPHS 115 (447)
T ss_dssp HSEECCTTC-C-----CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CS--EEECCCSS
T ss_pred CceeEecCC-C-----CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC--CC--ceEEEeCC
Confidence 568885443 2 3489999999988754322334321 2333333 3333 44433332 22 3444 888
Q ss_pred HHHHHHHHHHHhcCCCCEEEecCCCccch-HHH--Hhh--CCCeEEEeeccCCCCcccCHHHHHHhhc-CCceEEEEeCC
Q 014603 119 CTQAIEVILTVLARPGANILLPRPGFPYY-EAR--ATH--SHLEVRHFDLLPAKGWEVDLDAVEALAD-ENTVALVIINP 192 (422)
Q Consensus 119 ~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~-~~~--~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p 192 (422)
|++|+..++.+++++||+|++++|+|.++ ... ... .+..++.+++++ +++.+|++.+++.+. .+++++++++|
T Consensus 116 Gs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~i~~~~~ 194 (447)
T 3h7f_A 116 GAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-ATHLIDMDAVRATALEFRPKVIIAGWS 194 (447)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TTCSCCHHHHHHHHHHHCCSEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-ccCCcCHHHHHHHHHhcCCeEEEEcCC
Confidence 89999999999999999999999998762 111 112 234455555543 346789999999884 36788888899
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
+||++. ++++|.++|+++|+++|+|++|. ++.+.+.....+. .. .+++.|+||++ +|+|.||++++
T Consensus 195 ~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~--~~---di~~~s~sK~l--~G~~gG~i~~~- 261 (447)
T 3h7f_A 195 AYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVP--HA---DVVSTTVHKTL--GGGRSGLIVGK- 261 (447)
T ss_dssp SCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT--TC---SEEEEESSGGG--CCCSCEEEEEC-
T ss_pred CCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCC--CC---cEEEecCCcCC--CCCCeEEEEEC-
Confidence 998876 58999999999999999999974 3334443222221 11 27789999986 47889999986
Q ss_pred CCCcccchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCC
Q 014603 272 PNGILQDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI----PCITCPKKP 345 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~ 345 (422)
+++.+.+..... ..++++...+.++..++....+.++++..+++.++++.+.+.|++. +++.++..+
T Consensus 262 -------~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~ 334 (447)
T 3h7f_A 262 -------QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG 334 (447)
T ss_dssp -------GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS
T ss_pred -------HHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC
Confidence 356777765532 2234444445555555554334466888889999999999999876 466633233
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe----cC--CCCCCCCeEEEEec------cChHHHHHHHHHHHH
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PG--ITVGLKDWLRITFA------VEPSALEDGLGRMKA 413 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g--~~~~~~~~iRis~~------~~~~~l~~~~~~l~~ 413 (422)
..+.++|+.+.... ...+.+..++++.||.+. |+ ..+...+++|+++. .++++++++++.|.+
T Consensus 335 ~~~~~~~~~~~~~~-----~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~ 409 (447)
T 3h7f_A 335 TDVHLVLVDLRDSP-----LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIAT 409 (447)
T ss_dssp CSSSEEEEECTTSS-----CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCC-----CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHH
Confidence 45678888775321 133445566677899998 66 23334678999985 468999999999999
Q ss_pred HHHHh
Q 014603 414 FYDRH 418 (422)
Q Consensus 414 ~~~~~ 418 (422)
++.+.
T Consensus 410 ~l~~~ 414 (447)
T 3h7f_A 410 ALATG 414 (447)
T ss_dssp HHHSG
T ss_pred HHhcc
Confidence 98764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=233.12 Aligned_cols=311 Identities=16% Similarity=0.141 Sum_probs=217.4
Q ss_pred CcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecC
Q 014603 63 TASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPR 141 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~ 141 (422)
.++++.+++.+.+... .|.+..+..++|+.++++++ .+++++++||++|++.++.++ +++||+|+++.
T Consensus 15 ~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~ 83 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRN---WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPS 83 (373)
T ss_dssp HHHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEET
T ss_pred CCHHHHHHHHHHHHCC---CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECC
Confidence 3578888888887653 35566678999999999993 248999999999999999999 89999999999
Q ss_pred CCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEE
Q 014603 142 PGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIA 221 (422)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 221 (422)
++|+++...++..|.+++.++.++ +++.+|++.+++.+++++++++ |+||||... ++++|.++|+++|+++|+
T Consensus 84 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~---~l~~i~~l~~~~~~~li~ 156 (373)
T 3frk_A 84 NTFIATALAVSYTGAKPIFVEPDI-RTYNIDPSLIESAITEKTKAII---AVHLYGQPA---DMDEIKRIAKKYNLKLIE 156 (373)
T ss_dssp TSCTHHHHHHHHHSCEEEEECEET-TTTEECGGGTGGGCCTTEEEEE---EECCTTCCC---CHHHHHHHHHHHTCEEEE
T ss_pred CCcHHHHHHHHHcCCEEEEEeccc-cccCcCHHHHHHhcCCCCeEEE---EECCCcCcc---cHHHHHHHHHHcCCEEEE
Confidence 999999999999999999998864 3567899999999988888776 778999984 577889999999999999
Q ss_pred cccccccc-cCCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc------
Q 014603 222 DEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS------ 292 (422)
Q Consensus 222 D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 292 (422)
|++|+... +++. .+..+ .+ +++.||+ |.++++|. .|++++++ +++.+++.......
T Consensus 157 D~a~~~g~~~~~~---~~~~~-~d---~~~~S~~~~K~l~~~g~-gg~~~~~~-------~~~~~~~~~~~~~g~~~~~~ 221 (373)
T 3frk_A 157 DAAQAHGSLYKGM---KVGSL-GD---AAGFSFYPAKNLGSLGD-GGAVVTND-------KDLAEKIKALSNYGSEKKYH 221 (373)
T ss_dssp ECTTCTTCEETTE---ETTSS-SS---EEEEECCTTSSSCCSSS-CEEEEESC-------HHHHHHHHHHHBTTCSBTTB
T ss_pred ECCcccCCEECCE---ecccc-cc---EEEEeCcCCCccCccce-eEEEEeCC-------HHHHHHHHHHHhcCcccCCc
Confidence 99998532 2221 11111 12 7788877 98654353 68888754 45666665543211
Q ss_pred -------cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCC
Q 014603 293 -------SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINS 365 (422)
Q Consensus 293 -------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 365 (422)
...+.+..++....+ ..+++..++.+++.+.+.+.|++++ +.+...+......|..++... .+
T Consensus 222 ~~~~g~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----~~ 291 (373)
T 3frk_A 222 HIYKGFNSRLDELQAGFLRVKL-----KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS----EK 291 (373)
T ss_dssp CCSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE----SS
T ss_pred cccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe----CC
Confidence 112333333322222 3356677788888889999998885 553322222222221111100 14
Q ss_pred HHHHHHHHHHhcCeEEecCCCCCC-----------------------CCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 366 DMEFALKLAKEESVIVLPGITVGL-----------------------KDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 366 ~~~~~~~l~~~~gi~v~~g~~~~~-----------------------~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
..++...| .++||.+.++..... .+.+|++++ ++++|++++++.|++...+
T Consensus 292 ~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 292 RDELQKYL-NNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp HHHHHHHH-HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHH-HHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 55666665 556999987652110 167999997 7899999999999887554
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=222.38 Aligned_cols=285 Identities=18% Similarity=0.203 Sum_probs=201.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
.+..+++++++++++ .+ +.+++ ++|++|++.+++++.++||+|+++.|+|++... .++..|.+++.++
T Consensus 52 ~~~~~l~~~la~~~~------~~-~~i~~-~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (386)
T 1cs1_A 52 PTRDVVQRALAELEG------GA-GAVLT-NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_dssp HHHHHHHHHHHHHHT------CS-EEEEE-SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred ccHHHHHHHHHHHhC------CC-cEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence 456899999999994 23 45555 555999999999999999999999999987443 3466788888776
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||||.+++ +++|.++|+++|+++|+|++|+.+.+. .++ ..
T Consensus 124 ~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~----~~~-~~- 187 (386)
T 1cs1_A 124 Q-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ----NPL-AL- 187 (386)
T ss_dssp T-------TCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC----CGG-GG-
T ss_pred C-------CCHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----Ccc-cc-
Confidence 4 2789999998888999999999999999974 788899999999999999999875532 122 22
Q ss_pred CCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
+..+++.|+||+++++|.|+ ||+++++ +++.+.+...... +++.+++.++++...++. +....+
T Consensus 188 --~~di~~~s~sK~~~~~~~~~~G~~~~~~-------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~ 253 (386)
T 1cs1_A 188 --GADLVLHSCTKYLNGHSDVVAGVVIAKD-------PDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-----LVPRME 253 (386)
T ss_dssp --TCSEEEEETTTTTTCSSCCCCEEEEESS-------HHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred --CceEEEEcCcccccCCCCceeEEEEeCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-----HHHHHH
Confidence 23489999999999899887 9999863 3577777665543 345677777776666653 445556
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC----------------CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
.+.++.+.+.+.|++++.+.....+ ..+.++.+.++. ...++ ..++++.||.+.+.
T Consensus 254 ~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~l~~~gi~~~~~ 325 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-------DEQTL-RRFLGGLSLFTLAE 325 (386)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-------CHHHH-HHHHHTCSSSEEBS
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-------CHHHH-HHHHHhCCcceEcc
Confidence 6677777788888776443211011 124565666642 23333 44557789988742
Q ss_pred CC---------------C----------CC-CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 385 IT---------------V----------GL-KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 385 ~~---------------~----------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.. + +. ++++|++++. ++.++.++++.+++++..
T Consensus 326 ~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 326 SLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp CCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred cCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHHHhh
Confidence 11 0 11 4799999985 455555566666665543
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=242.20 Aligned_cols=330 Identities=15% Similarity=0.130 Sum_probs=211.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCC-----C----C
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP-----G----A 135 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~-----g----d 135 (422)
+.+.+++.+++..+. ..|.+..+..++|++++++++ .+++++|+||++|++.++.+++++ | |
T Consensus 53 ~~v~~a~~~~l~~~~-~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d 123 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGD-EAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK 123 (467)
T ss_dssp SCCCHHHHHHTTSCC-CCSSSCHHHHHHHHHHHHHHC--------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTT
T ss_pred HHHHHHHHHHhccCc-ceeccCchhHHHHHHHHHHhC--------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccc
Confidence 677888888875532 368777778899999999992 368999999999999999998887 8 9
Q ss_pred EEEecCCCccchHHHHhhCCCeEEEeec----cCC----CCcccCHHHHHHhhc----CCceEEEEeCCCCCc-ccccCH
Q 014603 136 NILLPRPGFPYYEARATHSHLEVRHFDL----LPA----KGWEVDLDAVEALAD----ENTVALVIINPGNPC-GNVYTY 202 (422)
Q Consensus 136 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~----~~~----~~~~~d~~~l~~~~~----~~~~~i~i~~p~npt-G~~~~~ 202 (422)
+|++..+.|..+.......+..+..... ... .++.+|++.|++.++ ++++++++++|+||+ |.+++.
T Consensus 124 ~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~ 203 (467)
T 2oqx_A 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSL 203 (467)
T ss_dssp CEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCH
T ss_pred eEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCH
Confidence 9877743323334444445555443211 111 234679999999886 368899999999998 899999
Q ss_pred HHHHHHHHHHHHcCcEEEEcccccc----------cccCCCCCCCccc--cCCCCCeEEEecCccccCCC-CceeEEEEe
Q 014603 203 QHLQKIAETAKKLGIMVIADEVYDH----------LAFGNTPFVPMGV--FGSIVPVLTLGSISKRWIVP-GWRLGWLVT 269 (422)
Q Consensus 203 ~~l~~i~~~~~~~~~~li~D~~~~~----------~~~~~~~~~~~~~--~~~~~~~i~i~s~sK~~~~~-G~r~G~~~~ 269 (422)
+++++|+++|++||++||+|+++.. ..+.|.....+.. .... + +++.|+||+++++ | ||+++
T Consensus 204 ~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~-d-~~~~s~sK~~g~~~G---g~~~~ 278 (467)
T 2oqx_A 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYA-D-MLAMSAKKDAMVPMG---GLLCM 278 (467)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGC-S-EEEEESSSTTCCSSC---EEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccC-C-eEEEecccccCCCCc---eEEEe
Confidence 9999999999999999999977643 1233322111110 0111 2 4578999998766 4 77776
Q ss_pred eCCCCcccchhHHHHHHhhhhhc------cCcchHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014603 270 SDPNGILQDSGIVDSIKSFLNIS------SDPATFIQGAVPQILEKTEEEFF-SKITDILRETADICCDRLKEIPCITCP 342 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 342 (422)
++.. + -+...+++...... +..+.....++...++. ++ ++..++..++++.+.+.|+++ ++. +
T Consensus 279 ~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~----~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~ 348 (467)
T 2oqx_A 279 KDDS-F---FDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD----GMNLDWLAYRIAQVQYLVDGLEEI-GVV-C 348 (467)
T ss_dssp CSGG-G---HHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHT-TCC-E
T ss_pred cChh-H---HHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHC-CCe-e
Confidence 5310 0 02334443332111 11121222222222221 12 123445567788888899887 776 4
Q ss_pred CCCCCceEEEEecCc--ccccCCCC-HHHHHHHHHHhcCeEEecCCCC--C-----------CCCeEEEEec---cChHH
Q 014603 343 KKPEGSMFVMVKLNY--SLLEGINS-DMEFALKLAKEESVIVLPGITV--G-----------LKDWLRITFA---VEPSA 403 (422)
Q Consensus 343 ~~~~~g~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~~--~-----------~~~~iRis~~---~~~~~ 403 (422)
. |.+++++|+.++. .......- ..++...++.++||.+.|+..| + ..+++|++++ +++++
T Consensus 349 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~ 427 (467)
T 2oqx_A 349 Q-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTH 427 (467)
T ss_dssp E-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHH
T ss_pred e-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHH
Confidence 3 6678888888742 10000000 3344666647779999985432 1 1379999998 68999
Q ss_pred HHHHHHHHHHHHHHhc
Q 014603 404 LEDGLGRMKAFYDRHA 419 (422)
Q Consensus 404 l~~~~~~l~~~~~~~~ 419 (422)
+++++++|++++++..
T Consensus 428 i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 428 MDFIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999987654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=228.96 Aligned_cols=332 Identities=11% Similarity=0.048 Sum_probs=224.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHH----HHHHHHHhhcCCCCCCCCCE
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPAR----RAIADYLNRDLPYKLSPDDV 113 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr----~~ia~~l~~~~~~~~~~~~i 113 (422)
+..+++++.+. +.++.+.+++.+++.+.....|+ ......+++ +++++++ +.+++ .
T Consensus 23 ~~~~~~~~~~~-------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~------g~~~~-~ 88 (405)
T 2vi8_A 23 HAKIELIASEN-------FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF------GAEHA-N 88 (405)
T ss_dssp HHSEECCTTCC-------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH------TCSEE-E
T ss_pred hcceeeccCcc-------cCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh------CCCce-E
Confidence 34567776554 23799999999987532111222 111234455 4677766 33433 3
Q ss_pred EEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH-H--HhhCC--CeEEEeeccCCCCcccCHHHHHHhhcC-CceEE
Q 014603 114 YLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA-R--ATHSH--LEVRHFDLLPAKGWEVDLDAVEALADE-NTVAL 187 (422)
Q Consensus 114 ~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~-~--~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i 187 (422)
+++++|++++..++.+++++||+|+++.|+|+.+.. . +...| ..++.+++++ .++.+|++.+++.+++ +++++
T Consensus 89 i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v 167 (405)
T 2vi8_A 89 VQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLI 167 (405)
T ss_dssp CCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEE
T ss_pred EEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhcCCeEE
Confidence 444455999999999999999999999999987643 1 12333 3666666543 3567899999998875 67777
Q ss_pred EEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCCCccccCCCCCeEEEecCccccC-CCCceeE
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF-GNTPFVPMGVFGSIVPVLTLGSISKRWI-VPGWRLG 265 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~G~r~G 265 (422)
++ +|+|. |.. .++++|.++|+++|+++|+|++|+.... .+... ..+.. ..++++|+||+++ +.| |
T Consensus 168 ~~-~~~~~-~~~---~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~--~di~~~s~sK~~~g~~g---G 234 (405)
T 2vi8_A 168 VA-AAAAY-PRI---IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP---NPVPY--AHFVTTTTHKTLRGPRG---G 234 (405)
T ss_dssp EE-CCSSC-CSC---CCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC---CSTTT--CSEEEEESSSTTCCCSC---E
T ss_pred EE-eCCCC-Ccc---CCHHHHHHHHHHcCCEEEEEccccccccccCcCC---Ccccc--CCEEEEeccccCCCCCC---e
Confidence 65 55543 444 2488999999999999999999984322 22111 11111 1288999999986 555 9
Q ss_pred EEEeeCCCCcccchhHHHHHHhhhh-h-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014603 266 WLVTSDPNGILQDSGIVDSIKSFLN-I-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343 (422)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 343 (422)
|++++ +++.+.+..... . .++++...+.++.++++...+.++++..++++++++.+.+.|+++ ++.+.
T Consensus 235 ~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~- 304 (405)
T 2vi8_A 235 MILCQ--------EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLV- 304 (405)
T ss_dssp EEEEC--------HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEG-
T ss_pred EEEEc--------HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEe-
Confidence 99985 467777766542 2 234455555555666764334578889999999999999999988 77633
Q ss_pred CC-CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCC----CC--CCCeEEEEecc------ChHHHHHHHHH
Q 014603 344 KP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT----VG--LKDWLRITFAV------EPSALEDGLGR 410 (422)
Q Consensus 344 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~----~~--~~~~iRis~~~------~~~~l~~~~~~ 410 (422)
.| ..++++|+.++... .+..++...+ .++||.+.+|.. ++ ..+++|++++. +++++++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~ 379 (405)
T 2vi8_A 305 SGGTDNHLLLVDLRPQQ----LTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAI 379 (405)
T ss_dssp GGSCSSSEEEEECGGGT----CCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCceEEEEEccCCC----CCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHH
Confidence 33 45788899886421 1455665555 667999999752 21 25789999983 78999999999
Q ss_pred HHHHHHHh
Q 014603 411 MKAFYDRH 418 (422)
Q Consensus 411 l~~~~~~~ 418 (422)
|++++++.
T Consensus 380 l~~~~~~~ 387 (405)
T 2vi8_A 380 IGLVLKNV 387 (405)
T ss_dssp HHHHHTCT
T ss_pred HHHHHhcc
Confidence 99998664
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=221.45 Aligned_cols=281 Identities=18% Similarity=0.168 Sum_probs=200.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~ 162 (422)
....+++++++++++ . ++.+++++|++|+..++.+++++||+|+++.++|+++... ++..|.+++.++
T Consensus 59 ~~~~~l~~~la~~~g------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 130 (389)
T 3acz_A 59 PTVEQFEEMVCSIEG------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID 130 (389)
T ss_dssp HHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 446789999999983 2 2677777888999999999999999999999999976554 577899988887
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
. .|++.+++.++++++++++++|+||+|.+++ +++|.++|+++|+++|+|++|..+.+. .++. ++
T Consensus 131 ~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~----~~~~-~~ 195 (389)
T 3acz_A 131 T-------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL----KPLE-LG 195 (389)
T ss_dssp T-------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC----CGGG-TT
T ss_pred C-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc----Cccc-cC
Confidence 4 3889999999889999999999999999975 788899999999999999999864321 1221 22
Q ss_pred CCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
..+++.|+||.++++|.|+ ||+++++ +++++++..... ...+.++..++++...++. +..+.+
T Consensus 196 ---~di~~~S~sK~~~~~~~~~~G~v~~~~-------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~r~~ 260 (389)
T 3acz_A 196 ---ADIALHSVSKYINGHGDVIGGVSSAKT-------AEDIATIKFYRKDAGSLMAPMDAFLCARGMKT-----LPIRMQ 260 (389)
T ss_dssp ---CSEEEEETTTTTTCSSCCCCEEEEESS-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred ---CeEEEECChhhccCCCCceeEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH-----HHHHHH
Confidence 3489999999999999998 9999862 267777766553 3345666777777777764 333344
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCC----------------CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec-
Q 014603 321 ILRETADICCDRLKEIPCITCPKK----------------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP- 383 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~- 383 (422)
+..++.+.+.+.|++++.+..+.. ...+.++.+.++ . .+....++++.|+.+.+
T Consensus 261 ~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--------~-~~~~~~~l~~~~i~~~~~ 331 (389)
T 3acz_A 261 IHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--------S-FEAAKKLMEHLKVCTLAV 331 (389)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--------S-HHHHHHHHTTCSSSEEBS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--------C-HHHHHHHHHhCCCcEECc
Confidence 455566666666665432110000 112445666664 2 23345566778888776
Q ss_pred --C------CCC----------------CC-CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 384 --G------ITV----------------GL-KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 384 --g------~~~----------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
| ..| +. ++++|+|++.. +.+++++.|.++++
T Consensus 332 s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~ 387 (389)
T 3acz_A 332 SLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALE 387 (389)
T ss_dssp CCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHT
T ss_pred CCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHh
Confidence 3 222 11 47999999853 66777777777764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-27 Score=221.62 Aligned_cols=284 Identities=20% Similarity=0.167 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~ 162 (422)
....++++.++++++ .+++++++||++|++.++.+++++||+|+++.++|+++...+ ...|.+++.++
T Consensus 66 ~~~~~l~~~la~~~g--------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 66 PTRTALEAALAAVED--------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp HHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 346788889998873 247899999999999999999999999999999998776555 56788888876
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+ |++.+++.++++++++++++|+||+|.+.+ +++|.++|+++|+++|+|++|+.... . .+ ..++
T Consensus 138 ~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~---~~-~~~~ 202 (392)
T 3qhx_A 138 LA-------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-Q---QP-LSLG 202 (392)
T ss_dssp TT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-C---CG-GGGT
T ss_pred CC-------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-C---Ch-HHhC
Confidence 52 889999999999999999999999999964 88899999999999999999975321 1 11 1233
Q ss_pred CCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
. .+++.|+||.++++| +++|+++.++ +++.+.+..... ....++++.++++...++. +..+.+
T Consensus 203 ~---di~~~S~sK~lg~~g~~~~G~v~~~~-------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~~~~ 267 (392)
T 3qhx_A 203 A---DVVLHSTTKYIGGHSDVVGGALVTND-------EELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-----LVLRMQ 267 (392)
T ss_dssp C---SEEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHH
T ss_pred C---cEEEEcCccccCCCCCceEEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----HHHHHH
Confidence 3 388999999998877 7999999864 467777766554 3456677888877777765 445566
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
+..++.+.+.+.|+++|.+..+..|. .|.++++.++... .....+... ++..++.+..|
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~----~~~~~~~~~-l~~~~~~~s~G 342 (392)
T 3qhx_A 268 RHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR----TAAEQLCAK-TNIFILAESLG 342 (392)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH----HHHHHHHHH-CSSSEECSCCC
T ss_pred HHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH----HHHHHHHHh-CCCceECCCCC
Confidence 77788888888888876653222221 2557788886410 023334333 35557777666
Q ss_pred CCCC--------------------CCCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 385 ITVG--------------------LKDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 385 ~~~~--------------------~~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
+.+. .++.||+|++. ++.++.++.|.+++
T Consensus 343 ~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al 391 (392)
T 3qhx_A 343 SVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL 391 (392)
T ss_dssp CSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence 6432 14679999984 34445555555544
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=219.15 Aligned_cols=277 Identities=15% Similarity=0.095 Sum_probs=193.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEeeccCC
Q 014603 91 PARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLEVRHFDLLPA 166 (422)
Q Consensus 91 ~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~ 166 (422)
++|+.++++++ .+ +.+++++|++|++.++.++.++||+|+++.|+|+++...+ ...|.+++.++.
T Consensus 2 ~l~~~la~~~g------~~--~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 70 (331)
T 1pff_A 2 ALEGKIAKLEH------AE--ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--- 70 (331)
T ss_dssp HHHHHHHHHHT------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred hHHHHHHHHhC------CC--eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---
Confidence 68999999983 33 4555556699999999999999999999999999876554 457888887764
Q ss_pred CCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH-cCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK-LGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 167 ~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~-~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
.|++.+++.++++++++++++|+||||.+++ +++|.++|++ +|+++|+|++|+.+.+. .++ .. +
T Consensus 71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~----~~~-~~---~ 135 (331)
T 1pff_A 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT----NPL-DL---G 135 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC----CGG-GG---T
T ss_pred ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC----Chh-hc---C
Confidence 3778999999888999999999999999975 8888999999 99999999999864432 122 22 2
Q ss_pred CeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 014603 246 PVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDIL 322 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 322 (422)
..+++.|+||.++++|.| +||+++++ +++.+++...... ..+++++.++++...++. +....+..
T Consensus 136 ~d~~~~s~~K~~~~~~~r~~G~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~ 203 (331)
T 1pff_A 136 VDIVVHSATKYINGHTDVVAGLVCSRA-------DIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKRA 203 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECH-------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred CcEEEEECccccCCCCCceEEEEEeCc-------HHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHHHHH
Confidence 459999999999999999 79999862 2677777765543 346677777776666653 22223333
Q ss_pred HHHHHHHHHHhhcC--------------CCCCCCC--CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC-
Q 014603 323 RETADICCDRLKEI--------------PCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI- 385 (422)
Q Consensus 323 ~~~~~~l~~~L~~~--------------~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~- 385 (422)
.++.+.+.+.|++. |++.+.. ....+.++.+.++ +..++ ..+++++||.+.+.+
T Consensus 204 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~l~~~gI~~~~~s~ 274 (331)
T 1pff_A 204 AENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--------GLEKA-KKVLDNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--------SHHHH-HHHHHTCSSSEECSSC
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--------CHHHH-HHHHHhCCCceeccCC
Confidence 34444444444332 2221100 0113446666664 23344 455677899876542
Q ss_pred --------C----------------CCC-CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 386 --------T----------------VGL-KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 386 --------~----------------~~~-~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
. ++. ++++|+|++ +++++++.+++.|+++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 1 122 579999998 5678888888877653
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=227.39 Aligned_cols=305 Identities=16% Similarity=0.180 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEec
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLP 140 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~ 140 (422)
+.++++.+++.+.+... .|.+..+..++|+.++++++ .+++++++||++|++.++.++ +++||+|+++
T Consensus 13 ~~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~ 81 (367)
T 3nyt_A 13 RIKDKIDAGIQRVLRHG---QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGDEVITP 81 (367)
T ss_dssp HHHHHHHHHHHHHHHHC---CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHHhcC---CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEEC
Confidence 34678888888887653 35555678999999999993 248999999999999999999 8999999999
Q ss_pred CCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEE
Q 014603 141 RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220 (422)
Q Consensus 141 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li 220 (422)
.++|+++...+...|.+++.++++++ .+.+|++.+++.+++++++++ |+||+|.. .++++|.++|+++|+++|
T Consensus 82 ~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~---~~~~~i~~la~~~~~~li 154 (367)
T 3nyt_A 82 GFTYVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITPRTKAII---PVSLYGQC---ADFDAINAIASKYGIPVI 154 (367)
T ss_dssp SSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCTTEEEEC---CBCGGGCC---CCHHHHHHHHHHTTCCBE
T ss_pred CCccHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCcCCcEEE---eeCCccCh---hhHHHHHHHHHHcCCEEE
Confidence 99999999999999999999998653 467899999999988887766 88899977 468888999999999999
Q ss_pred Eccccccc-ccCCCCCCCccccCCCCCeEEEecC--ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh------
Q 014603 221 ADEVYDHL-AFGNTPFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI------ 291 (422)
Q Consensus 221 ~D~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~s~--sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~------ 291 (422)
+|++|+.. .+.+.. +..++ .+++.|| +|.++++|. .|++++++ +++.+++......
T Consensus 155 ~D~a~~~g~~~~~~~---~~~~~----di~~~Sf~~~K~l~~~g~-gg~~~~~~-------~~l~~~~~~~~~~g~~~~~ 219 (367)
T 3nyt_A 155 EDAAQSFGASYKGKR---SCNLS----TVACTSFFPSAPLGCYGD-GGAIFTND-------DELATAIRQIARHGQDRRY 219 (367)
T ss_dssp EECTTTTTCEETTEE---TTSSS----SEEEEECCTTSSSCCSSC-CEEEEESC-------HHHHHHHHHHTBTTEEETT
T ss_pred EECccccCCeECCee---ccCCC----CEEEEECCCCCcCCCcCc-eeEEEeCC-------HHHHHHHHHHHhcCCCcCc
Confidence 99999752 233321 12222 2788886 899877676 78888854 5677777654321
Q ss_pred -------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc----eEEEEecCcccc
Q 014603 292 -------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS----MFVMVKLNYSLL 360 (422)
Q Consensus 292 -------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g----~~~~~~~~~~~~ 360 (422)
+...+.+.++++...++. +++..++.+++.+.+.+.|+++ ++.+...+..+ ..+.+.++
T Consensus 220 ~~~~~g~~~~~~~~~aa~~~~~l~~-----~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~---- 289 (367)
T 3nyt_A 220 HHIRVGVNSRLDTLQAAILLPKLEI-----FEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD---- 289 (367)
T ss_dssp EECSCCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS----
T ss_pred eeeccCcCCCccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC----
Confidence 233455555555555543 4556667777888888888887 44422222221 12233332
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCC--------C-C-----------CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITV--------G-L-----------KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~--------~-~-----------~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
+..++...| +++||.+.++... . . ...+|+++. .+++|++++++.|++.
T Consensus 290 ----~~~~l~~~L-~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ----NRESVQASL-KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ----SHHHHHHHH-HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHH-HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 355565655 5669998876531 0 0 356899887 7899999999988753
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=222.08 Aligned_cols=284 Identities=15% Similarity=0.104 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH----HhhCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR----ATHSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~ 163 (422)
...++|++++++++ .+ ..+++++|++|++.++.+++++||+|+++.++|+++... ++..|.+++.++.
T Consensus 115 ~~~~l~~~lA~l~g------~~--~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 186 (445)
T 1qgn_A 115 TTVVLEEKISALEG------AE--STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP 186 (445)
T ss_dssp HHHHHHHHHHHHHT------CS--EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred HHHHHHHHHHHHhC------CC--cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 45689999999883 22 445555556999999999999999999999999876653 5567888888764
Q ss_pred cCCCCcccCHHHHHHhhcCCc-eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 164 LPAKGWEVDLDAVEALADENT-VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~-~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
+ |++.|++.+++++ +++++++|+||+|.+.+ +++|.++|+++|+++|+|++|..... ..+ ..++
T Consensus 187 ~-------d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~----~~~-~~~g 251 (445)
T 1qgn_A 187 A-------DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN----QKA-LALG 251 (445)
T ss_dssp S-------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT----CCT-TTTT
T ss_pred C-------CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccccc----CCc-cccC
Confidence 2 7899999998888 99999999999999965 77889999999999999999975321 111 1233
Q ss_pred CCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFFSKITD 320 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 320 (422)
. .+++.|+||.+++.| .++|+++++ +++++++....... ...+++..+++...++. +..+.+
T Consensus 252 ~---Div~~S~sK~~gg~gd~~~G~l~~~--------~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~r~~ 315 (445)
T 1qgn_A 252 A---DLVLHSATKFLGGHNDVLAGCISGP--------LKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-----LHLRVQ 315 (445)
T ss_dssp C---SEEEECTTTTTTCSSSCCCEEEEEC--------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-----HHHHHH
T ss_pred C---EEEEECCcccccccccceEEEEEEC--------HHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-----HHHHHH
Confidence 3 388999999987665 579999985 46777776655433 34556666666566654 444556
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC----------------CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 321 ILRETADICCDRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
+..++++.+.+.|+++|++..+..| ..+.++++.++... .+...++.. ++..++.+..|
T Consensus 316 ~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~----~~~~~~l~~-l~~~~i~~s~G 390 (445)
T 1qgn_A 316 QQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL----LTTAKFVDA-LKIPYIAPSFG 390 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH----HHHHHHHHH-CSSSEECSCCC
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH----HHHHHHHHh-CCCceEeccCC
Confidence 6667788888999988776212233 13567777775310 012233333 23336776666
Q ss_pred CCCC----------------------C-CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 385 ITVG----------------------L-KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 385 ~~~~----------------------~-~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
..+. . ++.||+|++. |+++.+++.|+++++.
T Consensus 391 ~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 391 GCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS 444 (445)
T ss_dssp SSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 6542 2 4789999994 5799999999998864
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-27 Score=220.16 Aligned_cols=296 Identities=13% Similarity=0.134 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH--HHHhhCCC--eEEEeeccC
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE--ARATHSHL--EVRHFDLLP 165 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~g~--~~~~~~~~~ 165 (422)
.++++.+++++ +.+ +.+++++|+|+|+++++..+ .+||+|++++++|++.. ..++..|. +++.++.+.
T Consensus 38 ~~~~~~l~~~~------~~~-~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (379)
T 3ke3_A 38 NDLLSNLKTVY------NAE-AAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAER 109 (379)
T ss_dssp HHHHHHHHHHH------TCS-EEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEE
T ss_pred HHHHHHHHHHh------CCC-CEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccc
Confidence 45556666666 233 68899999999999988655 68999999999998753 34445553 666666532
Q ss_pred C------CC-cccCHHHHHHhhc-CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC
Q 014603 166 A------KG-WEVDLDAVEALAD-ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP 237 (422)
Q Consensus 166 ~------~~-~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~ 237 (422)
. .. ..+|++.+++.+. ++++++++++++|++|.+++.+++++|.++|+++|+++|+|++++ . + ....
T Consensus 110 ~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g---~-~~~~ 184 (379)
T 3ke3_A 110 TEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G---C-VWLD 184 (379)
T ss_dssp SSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---T-CCCC
T ss_pred cccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---C-cccc
Confidence 1 11 2479999999885 478889999999999999999999999999999999999999986 2 2 2223
Q ss_pred ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-------------------h----hccC
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-------------------N----ISSD 294 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-------------------~----~~~~ 294 (422)
+..++.+ +++.|++|+++++ .++|+++++ +++.+++.... . +.++
T Consensus 185 ~~~~~~d---~~~~s~~K~l~~~-~g~g~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t 252 (379)
T 3ke3_A 185 MKELGID---VLISAPQKGWSST-PCAGLVMLS--------AAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHAT 252 (379)
T ss_dssp HHHHTCS---EEEECTTTTTCSC-CCEEEEEEC--------HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSC
T ss_pred ccccCCC---EEEecchhhcCCC-CceEEEEEC--------HHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCC
Confidence 3333433 8888999986543 348999886 35555554310 0 1236
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CceEEEEecCcccccCCCCHHHHHHH
Q 014603 295 PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALK 372 (422)
Q Consensus 295 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (422)
++...++++.++|+...+..+++..++.+++++++++.|+++ ++.+...+. .+....+..+. .......
T Consensus 253 ~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~- 323 (379)
T 3ke3_A 253 MPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-------DDMHKGS- 323 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-------HHHHSSH-
T ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-------cchHHHH-
Confidence 777788888888876544557888899999999999999988 676432221 22233333321 1112233
Q ss_pred HHHhcCeEEecCCCCCC-----CCeEEEEec--cChHHHHHHHHHHHHHHHHhc
Q 014603 373 LAKEESVIVLPGITVGL-----KDWLRITFA--VEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 373 l~~~~gi~v~~g~~~~~-----~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.+.++||.+.+|..+.. .+.+||+++ +++++|++++++|+++++++.
T Consensus 324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 44677999999986543 679999997 788999999999999998765
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=225.50 Aligned_cols=327 Identities=13% Similarity=0.062 Sum_probs=206.9
Q ss_pred CcHHHHHHHHHHhhCCCCCC------CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCE
Q 014603 63 TASVAVDAIVHSVRSARFNC------YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN 136 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~ 136 (422)
.+|.+.+++.+++.+..... |......+.+++...+++.+.+ +.+++.|++++ |++++..++.+++++||+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~v~~~s-Gs~a~~~a~~~~~~~gd~ 118 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELF--GADYANVQPHS-GSQANFAVYTALLQPGDT 118 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHH--TCSEEECCCSS-HHHHHHHHHHHHCCTTCE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHh--CCCCceeEecC-cHHHHHHHHHHhcCCCCE
Confidence 57999999999885422112 2222233444443333333332 34555565554 588999999999999999
Q ss_pred EEecCCCccchH---HHHhhCCC--eEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCcccccCHHHHHHHHH
Q 014603 137 ILLPRPGFPYYE---ARATHSHL--EVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVYTYQHLQKIAE 210 (422)
Q Consensus 137 Vl~~~~~~~~~~---~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~~~~~l~~i~~ 210 (422)
|+++.|+|.++. ......|. ..+.++.+ .++.+|++.|++.+++ +++++++++|+||+ .. ++++|.+
T Consensus 119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~---~l~~l~~ 191 (420)
T 3gbx_A 119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--VV---DWAKMRE 191 (420)
T ss_dssp EEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--CC---CHHHHHH
T ss_pred EEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhcCCeEEEEecCccCC--cc---CHHHHHH
Confidence 999999997632 11122233 33444443 4567899999998876 58889888999874 43 4889999
Q ss_pred HHHHcCcEEEEccccccc-ccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh
Q 014603 211 TAKKLGIMVIADEVYDHL-AFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL 289 (422)
Q Consensus 211 ~~~~~~~~li~D~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 289 (422)
+|++||+++|+||+|... .+.+.....+.. ..+++.|+||+++ |++.||+++++.- +++.+.+....
T Consensus 192 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~-----~di~~~s~sK~~~--g~~gg~~~~~~~~-----~~~~~~~~~~~ 259 (420)
T 3gbx_A 192 IADSIGAYLFVDMAHVAGLIAAGVYPNPVPH-----AHVVTTTTHKTLA--GPRGGLILAKGGD-----EELYKKLNSAV 259 (420)
T ss_dssp HHHHTTCEEEEECTTTHHHHHTTSSCCSTTT-----SSEEEEESSGGGC--SCSCEEEEESSCC-----HHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCcchhceecccCCccccc-----CCEEEeecccCCC--CCCceEEEEcCCc-----HHHHHHhhhhc
Confidence 999999999999997532 233322222211 2388999999974 4556999986310 14666665543
Q ss_pred hh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHH
Q 014603 290 NI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDM 367 (422)
Q Consensus 290 ~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 367 (422)
.. .++++...+.++..++....+.++++.++++.++++.+.+.|++. ++.+...+..+.++|+.++... .+..
T Consensus 260 ~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----~~~~ 334 (420)
T 3gbx_A 260 FPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKN----LTGK 334 (420)
T ss_dssp C----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT----CCHH
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCC----CCHH
Confidence 22 224444555554545543334567888899999999999999885 6663322255778888775421 1344
Q ss_pred HHHHHHHHhcCeEEec-------CCCCCCCCeEEEEec------cChHHHHHHHHHHHHHHHHh
Q 014603 368 EFALKLAKEESVIVLP-------GITVGLKDWLRITFA------VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 368 ~~~~~l~~~~gi~v~~-------g~~~~~~~~iRis~~------~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+ ..+++++||.+.+ +..++ .+.+|++++ .++++++++++.|++++++.
T Consensus 335 ~~-~~~l~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 335 EA-DAALGRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp HH-HHHHHHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HH-HHHHHHCCcEeccccCCCCccccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 44 4455778999998 33333 456999986 34789999999999988664
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=220.53 Aligned_cols=290 Identities=17% Similarity=0.127 Sum_probs=198.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
+...+++++++++++ .+..+++++|++|+..++.+++++||+|++++++|.++.. .+...|.+++.++
T Consensus 82 p~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~ 153 (430)
T 3ri6_A 82 PTVEDLEQRLKNLTG--------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD 153 (430)
T ss_dssp HHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 456789999999883 2346777788899999999999999999999999988766 6677899988887
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+ |++.|++.++++++++++++|+||+|.+++ +++|+++|+++|+++|+|++|+...+ . .....+
T Consensus 154 ~~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~----~-~~~~~g 218 (430)
T 3ri6_A 154 VM-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL----L-EAKRLG 218 (430)
T ss_dssp TT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT----C-CGGGGT
T ss_pred CC-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----C-ChHHcC
Confidence 52 889999999989999999999999999975 77888999999999999999975322 1 112233
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEe-eCCCCccc------------chhHHHHHHhhh--hhccCcchHHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVT-SDPNGILQ------------DSGIVDSIKSFL--NISSDPATFIQGAVPQIL 307 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~-~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l 307 (422)
. .+++.|+||.++++|..+|.+++ ++...... ...++.++.... ......++...+.+...+
T Consensus 219 ~---div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l 295 (430)
T 3ri6_A 219 V---DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGL 295 (430)
T ss_dssp C---SEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHH
T ss_pred C---EEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 3 38999999999887765555555 22211100 011122222211 222344545444444434
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHH
Q 014603 308 EKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFAL 371 (422)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (422)
+ .+..+.++..++++.+.+.|++.|.+..+..|. +|+.+|+.++.. .+...++.
T Consensus 296 ~-----~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~-----~~~~~~~~ 365 (430)
T 3ri6_A 296 E-----TMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK-----EASYRFMD 365 (430)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH-----HHHHHHHH
T ss_pred h-----hHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH-----HHHHHHHH
Confidence 3 355666777888999999999988876444554 444888888631 02334444
Q ss_pred HHHHhcCeEEecCCCCC-----------------------CCCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 372 KLAKEESVIVLPGITVG-----------------------LKDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 372 ~l~~~~gi~v~~g~~~~-----------------------~~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
.+ +-.++.+.+|..+. .++.||+|++. |+.+.+++.|++++
T Consensus 366 ~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~al 429 (430)
T 3ri6_A 366 AL-KLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQAL 429 (430)
T ss_dssp HC-SSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred hC-CcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence 33 44456666666443 15789999985 45556666666665
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=220.30 Aligned_cols=283 Identities=18% Similarity=0.132 Sum_probs=194.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
....++|++++++++ .+ +.+++++|++|++.++. ++++||+|+++.|+|++... .++..|.+++.++
T Consensus 55 ~~~~~lr~~la~~~g------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 55 PNRENLERAVAALEN------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHHHTT------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred hhHHHHHHHHHHHhC------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 346799999999983 22 56666677999999999 88999999999999985443 3456788888876
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc----CcEEEEcccccccccCCCCCCCc
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL----GIMVIADEVYDHLAFGNTPFVPM 238 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~----~~~li~D~~~~~~~~~~~~~~~~ 238 (422)
.+ | +.+++.++++++++++++|+||||.+++ +++|.++|+++ |+++|+|++|+.+.+. ..
T Consensus 126 ~~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~ 189 (393)
T 1n8p_A 126 DL-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NP 189 (393)
T ss_dssp SH-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CG
T ss_pred CC-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CH
Confidence 52 6 8899989888999999999999999975 78888999999 9999999999876542 12
Q ss_pred cccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHH
Q 014603 239 GVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 239 ~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
..++ ..+++.|+||.++++|+|+ ||+++++ +++++.+..... ...+.++..+.++...++. +.
T Consensus 190 ~~~~---~di~~~S~sK~~g~~G~rigG~~~~~~-------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----~~ 254 (393)
T 1n8p_A 190 LNFG---ADIVVHSATKYINGHSDVVLGVLATNN-------KPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-----LH 254 (393)
T ss_dssp GGGT---CSEEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HH
T ss_pred HHcC---CeEEEEECcccccCCCCceeEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-----HH
Confidence 2233 3489999999999999999 9988742 467777766543 2334556666666666654 44
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-CCCCCCC----------------C-C-ceEEEEecCcccccCCCCHHHHHHHHHHhc
Q 014603 317 KITDILRETADICCDRLKEIPC-ITCPKKP----------------E-G-SMFVMVKLNYSLLEGINSDMEFALKLAKEE 377 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~----------------~-~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (422)
...++..++.+.+.+.|++.+. +..+..| . . +.++++.++... .+...++..+ +..
T Consensus 255 ~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~----~~~~~~l~~l-~~~ 329 (393)
T 1n8p_A 255 LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA----EAASKFASST-RLF 329 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH----HHHHHHHHHC-SSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH----HHHHHHHhhC-Ccc
Confidence 4555666677777777777644 2211111 1 2 557777775310 0122333332 333
Q ss_pred CeEEecCC----------CC------------CC-CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 378 SVIVLPGI----------TV------------GL-KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 378 gi~v~~g~----------~~------------~~-~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
++.+..|+ .. +. ++.+|+|++ +++++++.+.+.|+++
T Consensus 330 ~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 330 TLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp EECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 44443332 11 11 478999999 4567777777766653
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=227.82 Aligned_cols=336 Identities=13% Similarity=0.104 Sum_probs=224.4
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh----c------
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL----A------ 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~------ 131 (422)
+.++.+.+++.....+.....|.......++++.+.+++.+.+|.+ ..+.+++|+|+++|+..++.+. +
T Consensus 111 ~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~ 189 (497)
T 2qma_A 111 PLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGH 189 (497)
T ss_dssp CBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhccc
Confidence 5577888887666554333345544456788888777777766643 2378999999999999988873 2
Q ss_pred ---CC------CC-EEEecCCCccchHHHHhhCCC---eEEEeeccCCCCcccCHHHHHHhhcCC----ce--EEEEeCC
Q 014603 132 ---RP------GA-NILLPRPGFPYYEARATHSHL---EVRHFDLLPAKGWEVDLDAVEALADEN----TV--ALVIINP 192 (422)
Q Consensus 132 ---~~------gd-~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~--~i~i~~p 192 (422)
.+ |+ .|+++.++|+++...+...|. +++.+|.+ .++.+|++.|++.++++ ++ +++++.+
T Consensus 190 ~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~ 267 (497)
T 2qma_A 190 SIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAG 267 (497)
T ss_dssp CHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred chhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCC
Confidence 12 46 799999999999888888876 68888875 35679999999988643 33 7788899
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
+||||.. +++++|.++|+++|+++++|++|+.+.+.......+..+. ...+++.|+||++++| .++|+++++++
T Consensus 268 ~~~tG~~---~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~--~~D~i~~s~hK~l~~p-~~~G~l~~~~~ 341 (497)
T 2qma_A 268 TTDHGAI---DDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVE--RAHSISVDFHKLFYQT-ISCGALLVNDK 341 (497)
T ss_dssp CTTTCCB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGG--GCSEEEEETTTTTCCC-SSCEEEEESCG
T ss_pred CCCCCCC---CCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcc--cCCEEEEcchhccCCC-cceEEEEEeCH
Confidence 9999998 6688999999999999999999987654322110122221 1126778999987665 68999998753
Q ss_pred CCcccchhHHHHHHhhhhh-cc----Ccc-------------hHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 273 NGILQDSGIVDSIKSFLNI-SS----DPA-------------TFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~-~~----~~~-------------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
. .++.+.....+ .. .++ .+.++++ ++.....++.+..++..++++++.+.|+
T Consensus 342 ~-------~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~---l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 411 (497)
T 2qma_A 342 S-------NFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMT---MQNVGPKALGDMYDHLLAQTLEVADMIR 411 (497)
T ss_dssp G-------GGGGGCC--------------------CCSCCCTHHHHHHH---HHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 11111110000 00 011 1222333 3322356788888999999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c--cChHHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALEDGLGRM 411 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~--~~~~~l~~~~~~l 411 (422)
+++++.++..|..+ ++++++............++...+ .+.|+.+.++..+...+++|+++ + ++++++++++++|
T Consensus 412 ~~~~~~~~~~~~~~-~v~f~~~~~~~~~~~l~~~l~~~l-~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l 489 (497)
T 2qma_A 412 TNDQFELLAEPSLS-TVLFRATHETADLDELNKALRLEA-LTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKI 489 (497)
T ss_dssp TCTTEEECSCCSSS-EEEEEECCSSSCHHHHHHHHHHHH-HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHH
T ss_pred hCCCeEEEcCCCce-EEEEEEcCCccCHHHHHHHHHHHH-HhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 98888744445544 556666431100000012344444 45588887654444457899998 3 7899999999999
Q ss_pred HHHHHHh
Q 014603 412 KAFYDRH 418 (422)
Q Consensus 412 ~~~~~~~ 418 (422)
+++++++
T Consensus 490 ~~~~~~~ 496 (497)
T 2qma_A 490 NMLAVEL 496 (497)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=224.64 Aligned_cols=329 Identities=9% Similarity=0.021 Sum_probs=222.6
Q ss_pred HHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC--------CC-----C
Q 014603 69 DAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR--------PG-----A 135 (422)
Q Consensus 69 ~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~g-----d 135 (422)
+.+...++. ....|.......++++.+.+++.+.+|.+.+.+++++|+|+|+|+..++.++.. +| +
T Consensus 111 ~~l~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~ 189 (504)
T 2okj_A 111 EWLTSTANT-NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPK 189 (504)
T ss_dssp HHHHHHHCC-BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCC
T ss_pred HHHHHhhcc-CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCC
Confidence 444444433 223455545556777777777776666443367899999999999999888742 46 6
Q ss_pred -EEEecCCCccchHHHHhhCCC---eEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcccccCHHHH
Q 014603 136 -NILLPRPGFPYYEARATHSHL---EVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNVYTYQHL 205 (422)
Q Consensus 136 -~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG~~~~~~~l 205 (422)
.|+++.++|+++...+...|. +++.++.+ .++.+|++.|++.+++ +++++++++|+||||.+ +++
T Consensus 190 ~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i---~~l 264 (504)
T 2okj_A 190 LVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF---DPI 264 (504)
T ss_dssp EEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCB---CCH
T ss_pred eEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCc---CCH
Confidence 789999999999988888877 78888874 3577999999998865 47888999999999998 568
Q ss_pred HHHHHHHHHcCcEEEEcccccccccCCCCC-CCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 206 ~~i~~~~~~~~~~li~D~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
++|.++|+++|+++++|++|+.+.+..... ..+..+.. ..+++.|++|+++.| .++|+++++++ ++...
T Consensus 265 ~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~--~D~i~~~~hK~~~~p-~~~g~l~~~~~-------~~~~~ 334 (504)
T 2okj_A 265 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIER--ANSVTWNPHKMMGVL-LQCSAILVKEK-------GILQG 334 (504)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGG--CSEEEECTTSTTCCC-SCCEEEEESST-------THHHH
T ss_pred HHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCccc--CCEEEECchhhcCCC-cceEEEEEECH-------HHHHH
Confidence 889999999999999999998765432111 12221211 126778999997655 68999999752 24332
Q ss_pred HH-hhhhhc-c--------------------CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014603 285 IK-SFLNIS-S--------------------DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP 342 (422)
Q Consensus 285 ~~-~~~~~~-~--------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 342 (422)
.. ....+. + ....+.++++..++. ..++.+..++..++++++.+.|+++|++.++
T Consensus 335 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 411 (504)
T 2okj_A 335 CNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVGFENQINKCLELAEYLYAKIKNREEFEMV 411 (504)
T ss_dssp HHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTEEES
T ss_pred HhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 21 110000 0 112455555555554 4668888899999999999999998888754
Q ss_pred C--CCCCceEEEEecCccccc--C--------CCCHHHHHHHHHHhcCe-EEecCCCCCC-CCeEEEEec---cChHHHH
Q 014603 343 K--KPEGSMFVMVKLNYSLLE--G--------INSDMEFALKLAKEESV-IVLPGITVGL-KDWLRITFA---VEPSALE 405 (422)
Q Consensus 343 ~--~~~~g~~~~~~~~~~~~~--~--------~~~~~~~~~~l~~~~gi-~v~~g~~~~~-~~~iRis~~---~~~~~l~ 405 (422)
. .|..+.+.+...+..... . .....++...+.+ .|+ .+.++ .+.. .+++|++++ +++++++
T Consensus 412 ~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~-~~~~~~~~lRis~~~~~~t~edi~ 489 (504)
T 2okj_A 412 FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQ-PQGDKANFFRMVISNPAATQSDID 489 (504)
T ss_dssp SSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHH-HTSCEEEEE-EETTEEEEEEECCCCTTCCHHHHH
T ss_pred ecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHh-CCcEEEEee-EECCceEEEEEEeCCCCCCHHHHH
Confidence 3 366666665444421000 0 0002345556654 475 44432 2322 368999996 6899999
Q ss_pred HHHHHHHHHHHHh
Q 014603 406 DGLGRMKAFYDRH 418 (422)
Q Consensus 406 ~~~~~l~~~~~~~ 418 (422)
+++++|+++++++
T Consensus 490 ~~~~~l~~~~~~~ 502 (504)
T 2okj_A 490 FLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=217.02 Aligned_cols=310 Identities=15% Similarity=0.152 Sum_probs=213.0
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEec
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVG--ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLP 140 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g--~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~ 140 (422)
++++.+++.+.+.. .|.+..| ..++|++++++++ .+++++++|+++|++.++.++ +++||+|+++
T Consensus 11 ~~~v~~a~~~~~~~----~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~ 78 (394)
T 1o69_A 11 GGNELKYIEEVFKS----NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLAS 78 (394)
T ss_dssp -CCHHHHHHHHHHH----TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEEC
Confidence 46778888888765 2544456 8899999999993 268999999999999999999 8999999999
Q ss_pred CCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC---CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCc
Q 014603 141 RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE---NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGI 217 (422)
Q Consensus 141 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~ 217 (422)
.|+|+++...+...|.+++.++.+ +++.+|++.+++.+++ +++++++++ |+|.. .++++|.++|+++|+
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~---~~l~~i~~l~~~~~~ 150 (394)
T 1o69_A 79 SFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNA---AKMDEIVEICKENDI 150 (394)
T ss_dssp SSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCC---CCHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCCh---hhHHHHHHHHHHcCC
Confidence 999999999999999999999876 4567899999998875 688888875 79976 678899999999999
Q ss_pred EEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhcc-C-
Q 014603 218 MVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS-D- 294 (422)
Q Consensus 218 ~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 294 (422)
++|+|++|+ ++.+.+... ..+. + +.+.|+||..+++|.|+||+++++ +++++++........ .
T Consensus 151 ~li~Dea~~~g~~~~~~~~---~~~~--~--~~~~s~s~~K~l~~~~~G~~~~~~-------~~l~~~l~~~~~~~~~~~ 216 (394)
T 1o69_A 151 VLIEDAAEALGSFYKNKAL---GTFG--E--FGVYSYNGNKIITTSGGGMLIGKN-------KEKIEKARFYSTQARENC 216 (394)
T ss_dssp EEEEECTTCTTCEETTEET---TSSS--S--EEEEECCTTSSSCCSSCEEEEESC-------HHHHHHHHHHTBTCCCSS
T ss_pred EEEEECcCcccceeCCccc---cccc--C--cEEEEEeCCccCCCCCceEEEECC-------HHHHHHHHHHHHhccccC
Confidence 999999998 444443211 1111 1 445555433344567899999853 467777765432210 0
Q ss_pred -------------cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----Cce-EEEEecC
Q 014603 295 -------------PATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----GSM-FVMVKLN 356 (422)
Q Consensus 295 -------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~-~~~~~~~ 356 (422)
.+.+...++...++ ++++..++++++++++.+.|+++ +.+. .+. .++ ++++.++
T Consensus 217 ~~~~~~~~g~~~~~~~~~aa~~l~~l~-----~l~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~~~~~~~~~~~~i~~~ 288 (394)
T 1o69_A 217 LHYEHLDYGYNYRLSNVLGAIGVAQME-----VLEQRVLKKREIYEWYKEFLGEY--FSFL-DELENSRSNRWLSTALIN 288 (394)
T ss_dssp SSCCCSSCCCBCBCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHTTT--EECC-CCCTTEECCCSSEEEEES
T ss_pred ccccccccCcccCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccc--cccc-CCCCCCcceeEEEEEEec
Confidence 12222222222233 35667788889999999999886 4422 221 222 3556665
Q ss_pred ccc--------------ccC--CCCHHHHHHHHHHhcCeEEecCCCCC-----CC---------------CeEEEEec--
Q 014603 357 YSL--------------LEG--INSDMEFALKLAKEESVIVLPGITVG-----LK---------------DWLRITFA-- 398 (422)
Q Consensus 357 ~~~--------------~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~---------------~~iRis~~-- 398 (422)
... .+. ..+..++...| .++||.+.+|..+. .. ..+|+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (394)
T 1o69_A 289 FDKNELNACQKDINISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTA 367 (394)
T ss_dssp CCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTT
T ss_pred chhhccccccccccccccccccccCHHHHHHHH-HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCC
Confidence 210 000 00244555555 56799999985330 01 23444444
Q ss_pred cChHHHHHHHHHHHHHHH
Q 014603 399 VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~ 416 (422)
++++|++++++.|+++++
T Consensus 368 ~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 368 MSKDDVYEISKLILKSIK 385 (394)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 789999999999998764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=218.35 Aligned_cols=314 Identities=13% Similarity=0.119 Sum_probs=217.6
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHH-HHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEE
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAI-ADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANIL 138 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~i-a~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl 138 (422)
+++++++.+++.+.+..+....|. ....++|+++ +++++ ..+++++++||++|+..++.++ +++||+|+
T Consensus 12 ~~~~~~i~~a~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi 82 (377)
T 3ju7_A 12 TVPVIEYLDELKEIDASHIYTNYG--PINQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKKRKKGKYAL 82 (377)
T ss_dssp CCCGGGGHHHHHHHHHHTCCSSSC--HHHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEE
T ss_pred CCCcHHHHHHHHHHHHcCCcccCC--HHHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEE
Confidence 788899999999988765432233 3468999999 99982 2567999999999999999998 89999999
Q ss_pred ecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh-cCC--ceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 139 LPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA-DEN--TVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~--~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
++.++|..+...+...|++++.+++++ +++.+|++.+++.+ +++ +++++ |+||+|... ++++|.++|+ +
T Consensus 83 ~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~---~~~~i~~la~-~ 154 (377)
T 3ju7_A 83 MPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWM---NLEEYEELEK-K 154 (377)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCC---CCHHHHHHHH-T
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCcc---CHHHHHHHHh-c
Confidence 999999999999999999999999864 46789999999987 555 77765 678899985 4778888899 9
Q ss_pred CcEEEEccccccccc-CCCCCCCc-cccCCCCCeEEEecC--ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh
Q 014603 216 GIMVIADEVYDHLAF-GNTPFVPM-GVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI 291 (422)
Q Consensus 216 ~~~li~D~~~~~~~~-~~~~~~~~-~~~~~~~~~i~i~s~--sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (422)
|++||+|++|+.... .+. .+ ..+. + +.+.|| +|.+++ | +.|++++++ +++.++++.....
T Consensus 155 ~~~vi~D~a~a~g~~~~~~---~~g~~~~-d---~~~~S~~~~K~l~~-g-~gG~~~~~~-------~~l~~~~~~~~~~ 218 (377)
T 3ju7_A 155 GVPVVVDAAPGFGLMNGGM---HYGQDFS-G---MIIYSFHATKPFGI-G-EGGLIYSKN-------EEDIQRIKRMGNF 218 (377)
T ss_dssp TCCBEEECTTCTTCEETTE---ETTTTCS-S---EEEEECBTTSSSCC-B-SCEEEEESC-------HHHHHHHHHHTBT
T ss_pred CCEEEEECCCccCCeECCE---eccCCCC-c---EEEEECCCCCcCCC-C-CcEEEEECC-------HHHHHHHHHHHhc
Confidence 999999999986332 111 11 1111 1 555554 698765 4 578888764 5677777655431
Q ss_pred -------------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc-----eEEEE
Q 014603 292 -------------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS-----MFVMV 353 (422)
Q Consensus 292 -------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-----~~~~~ 353 (422)
....+.+.++.+...++. ++...++.+++++.+.+.|++++++.....+..+ .++.+
T Consensus 219 g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-----l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (377)
T 3ju7_A 219 GFDTNRECTMMGFNCKMSEYAAAIGIATMKK-----WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPI 293 (377)
T ss_dssp TBCTTSCBCSSCCBCCCCHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEE
T ss_pred CCCCCCceeeccccCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEE
Confidence 123344444444444543 5666777778888888888888654322222221 13334
Q ss_pred ecCcccccCCCCHHHHHHHHHHhcCeEEecCCC--CCC-------------------CCeEEEEec--cChHHHHHHHHH
Q 014603 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGIT--VGL-------------------KDWLRITFA--VEPSALEDGLGR 410 (422)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~--~~~-------------------~~~iRis~~--~~~~~l~~~~~~ 410 (422)
.++.. .+..++...| +++||.+..+.. +.. .+.+|+.++ .+++++++.++.
T Consensus 294 ~~~~~-----~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~ 367 (377)
T 3ju7_A 294 LCPEE-----VRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVIC 367 (377)
T ss_dssp ECCTT-----SCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHH
T ss_pred EeCCh-----hhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHH
Confidence 44421 1255565555 667999987652 110 356898887 789999999999
Q ss_pred HHHHHHHh
Q 014603 411 MKAFYDRH 418 (422)
Q Consensus 411 l~~~~~~~ 418 (422)
|++++..+
T Consensus 368 l~~~~~~~ 375 (377)
T 3ju7_A 368 LGQKVVSA 375 (377)
T ss_dssp HTC-----
T ss_pred HHHHHhcc
Confidence 99887654
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=213.20 Aligned_cols=282 Identities=16% Similarity=0.150 Sum_probs=191.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~~~ 162 (422)
.+..++|++++++++ .. +.|+++ +|++|+..++. ++++||+|+++.|+|++... .++..|.+++.++
T Consensus 67 p~~~~l~~~la~~~g------~~-~~i~~~-sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 137 (403)
T 3cog_A 67 PTRNCLEKAVAALDG------AK-YCLAFA-SGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVD 137 (403)
T ss_dssp HHHHHHHHHHHHHHT------CS-EEEEES-CHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred chHHHHHHHHHHHhC------CC-cEEEEC-CHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEEC
Confidence 456899999999994 22 455555 55699999999 88999999999999987443 3356788888887
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC-cEEEEcccccccccCCCCCCCcccc
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG-IMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~-~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
.+ |++.+++.++++++++++++|+||||.+++ +++|+++|+++| +++|+|++|..+.+. .++. +
T Consensus 138 ~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~----~~~~-~ 202 (403)
T 3cog_A 138 CS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ----RPLA-L 202 (403)
T ss_dssp TT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC----CTTT-T
T ss_pred CC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC----Cccc-c
Confidence 52 789999999889999999999999999975 888899999999 999999999875432 1221 2
Q ss_pred CCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
+ ..+++.|+||.++++| .|+||+++++ +++.+++..... .....+++.++++...++. +..+.
T Consensus 203 ~---~div~~S~sK~~~g~~~~~~G~v~~~~-------~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-----l~~r~ 267 (403)
T 3cog_A 203 G---ADISMYSATKYMNGHSDVVMGLVSVNC-------ESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT-----LHVRM 267 (403)
T ss_dssp T---CSEEEEETTTTTTCSSCCCCEEEEECC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred C---CeEEEEcChhhccCCCCCeEEEEEECc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----HHHHH
Confidence 2 3499999999988766 5799999853 467777776554 3345677888887777765 23333
Q ss_pred HHHHHHHHHHHHHhhcC--------------CCCCCCCCCC---CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe
Q 014603 320 DILRETADICCDRLKEI--------------PCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL 382 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~--------------~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~ 382 (422)
++..++...+.+.|++. |++.+. .+. .|.++.+.++. .. +....++++.||.+.
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~-~~~~~~~g~~~~~~l~~-------~~-~~~~~~l~~~~i~~~ 338 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELV-KRQCTGCTGMVTFYIKG-------TL-QHAEIFLKNLKLFTL 338 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHH-HHHCSCCCSEEEEEESS-------CH-HHHHHHHHHCSSSEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHH-HhcCCCCceEEEEEecC-------CH-HHHHHHHHhCCcceE
Confidence 44444554555555443 232211 111 13344445643 12 334555677787554
Q ss_pred c---CC----------CC------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 383 P---GI----------TV------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 383 ~---g~----------~~------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
. |. .. +. ++++|+|++. ++.++.++.|.+++++.
T Consensus 339 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 339 AESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL--EDEEDLLEDLDQALKAA 398 (403)
T ss_dssp CSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHHHh
Confidence 2 21 11 22 5799999995 23444555555555544
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=219.86 Aligned_cols=336 Identities=9% Similarity=0.021 Sum_probs=227.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC------------
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR------------ 132 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~------------ 132 (422)
..+.+++...+.. ....|....+..++++.+++++.+.+|.+.+++.+++|+|+|+|+..++.++..
T Consensus 110 ~~~~e~l~~~~~~-~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~ 188 (511)
T 3vp6_A 110 GLAGEWLTSTANT-NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA 188 (511)
T ss_dssp HHHHHHHHHHHCC-CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred HHHHHHHHHHhcc-CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 3445666666654 334677777788999999999998887666667999999999999988877653
Q ss_pred --CCCEEEecCCCccchHHHHhhCCC---eEEEeeccCCCCcccCHHHHHHhhcCC------ceEEEEeCCCCCcccccC
Q 014603 133 --PGANILLPRPGFPYYEARATHSHL---EVRHFDLLPAKGWEVDLDAVEALADEN------TVALVIINPGNPCGNVYT 201 (422)
Q Consensus 133 --~gd~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~nptG~~~~ 201 (422)
+++.|+++.++|+++...++..|. +++.++.+ .++.+|++.|++.++++ +++++++.|+|++|.+
T Consensus 189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v-- 264 (511)
T 3vp6_A 189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF-- 264 (511)
T ss_dssp GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB--
T ss_pred cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc--
Confidence 467899999999999999999998 78888875 34679999999988654 7888999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchh
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNT-PFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 280 (422)
+++++|+++|++||+++++|++|+....... ....+.... .-.+++.+++|+++.| ..+|+++++++ +
T Consensus 265 -d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~--~aDsv~~~~hK~l~~p-~g~g~l~~~~~-------~ 333 (511)
T 3vp6_A 265 -DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE--RANSVTWNPHKMMGVL-LQCSAILVKEK-------G 333 (511)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEEEEESST-------T
T ss_pred -ccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc--cCCEEEECcccccCCC-cCeEEEEEeCH-------H
Confidence 6799999999999999999999987543211 111111111 1126778999997655 56899988753 3
Q ss_pred HHHHHHhhh-hh-----------------cc-CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014603 281 IVDSIKSFL-NI-----------------SS-DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITC 341 (422)
Q Consensus 281 ~~~~~~~~~-~~-----------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 341 (422)
+........ .+ +. .........+..++......+++++.++..++.+++.+.|+++|++++
T Consensus 334 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l 413 (511)
T 3vp6_A 334 ILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEM 413 (511)
T ss_dssp HHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEE
T ss_pred HHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 333321100 00 00 000111222233333334578899999999999999999999999885
Q ss_pred CC--CCCCceEEEEecCcccccCCC-C----------HHHHHHHHHHhcCeEEecCCC-CCCCCeEEEEec---cChHHH
Q 014603 342 PK--KPEGSMFVMVKLNYSLLEGIN-S----------DMEFALKLAKEESVIVLPGIT-VGLKDWLRITFA---VEPSAL 404 (422)
Q Consensus 342 ~~--~~~~g~~~~~~~~~~~~~~~~-~----------~~~~~~~l~~~~gi~v~~g~~-~~~~~~iRis~~---~~~~~l 404 (422)
.. .|..+.+.|...|.. ..+.. + ..++...|.++ |+.+..... .+..+++|++++ ++.++|
T Consensus 414 ~~~~~p~~~~v~f~~~p~~-~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di 491 (511)
T 3vp6_A 414 VFNGEPEHTNVCFWYIPQS-LRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQGDKANFFRMVISNPAATQSDI 491 (511)
T ss_dssp SSSSCCSSSCEEEEECCGG-GSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEECCCCTTCCHHHH
T ss_pred EecCCCCeEEEEEEEeCcc-ccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEeCCceEEEEEEecCCCCCHHHH
Confidence 54 355555444333321 11000 0 12455555554 654433111 111347999984 678999
Q ss_pred HHHHHHHHHHHHHh
Q 014603 405 EDGLGRMKAFYDRH 418 (422)
Q Consensus 405 ~~~~~~l~~~~~~~ 418 (422)
+.+++.|++..+++
T Consensus 492 ~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 492 DFLIEEIERLGQDL 505 (511)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876554
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-26 Score=214.46 Aligned_cols=214 Identities=12% Similarity=0.124 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEee
Q 014603 87 VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLEVRHFD 162 (422)
Q Consensus 87 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~ 162 (422)
+...++|+.+|++++ .+.+++++||++|++.++.+++++||+|+++.+.|++....+ +..|+++..++
T Consensus 82 p~~~~le~~lA~l~g--------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 153 (415)
T 2fq6_A 82 LTHFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 153 (415)
T ss_dssp HHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred chHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC
Confidence 346789999999983 235777789999999999999999999999999998776443 45688888775
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCCCccc
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK--LGIMVIADEVYDHLAFGNTPFVPMGV 240 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~ 240 (422)
. .|+++|+++++++++++++++|+||+|.+++ +++|+++|++ +|+++|+|++|+.... ..++ .
T Consensus 154 ~-------~d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~----~~p~-~ 218 (415)
T 2fq6_A 154 P-------LIGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL----FKAL-D 218 (415)
T ss_dssp T-------TCGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS----SCGG-G
T ss_pred C-------CCHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc----CCcc-c
Confidence 4 2788999999989999999999999999974 7888999999 9999999999975321 1122 2
Q ss_pred cCCCCCeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHHHHH
Q 014603 241 FGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 241 ~~~~~~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
++. .+++.|++|.++++|.+ .|++++++ ++++++....... ...++...+++...++. +..+
T Consensus 219 ~g~---Div~~S~sK~lg~~g~~~~G~l~~~~--------~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~-----l~~r 282 (415)
T 2fq6_A 219 FGI---DVSIQAATKYLVGHSDAMIGTAVCNA--------RCWEQLRENAYLMGQMVDADTAYITSRGLRT-----LGVR 282 (415)
T ss_dssp GTC---SEEEEETTTTTTCSSSCCCEEEEECT--------TTHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-----HHHH
T ss_pred cCC---eEEEEeCccccCCCCCceEEEEEeCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----HHHH
Confidence 333 38999999999888765 58888753 3556665544322 23344444444444432 4555
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 014603 319 TDILRETADICCDRLKEIPCI 339 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~~~ 339 (422)
.++..++.+.+.+.|++.|.+
T Consensus 283 ~~~~~~n~~~l~~~L~~~~~v 303 (415)
T 2fq6_A 283 LRQHHESSLKVAEWLAEHPQV 303 (415)
T ss_dssp HHHHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHHHHcCCCe
Confidence 666677788888888876543
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=223.88 Aligned_cols=332 Identities=10% Similarity=0.034 Sum_probs=226.9
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-------CCCEEEecCHHHHHHHHHHHhcCC---
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-------PDDVYLTLGCTQAIEVILTVLARP--- 133 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~l~~~--- 133 (422)
+..+.+++...++. ....|....+..++++.+++++.+.+|.+.. ...+++|+|+|+|+..++.++..+
T Consensus 87 ~~~~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~ 165 (486)
T 1js3_A 87 PAMLADMLCGAIGC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR 165 (486)
T ss_dssp HHHHHHHHHHHHCC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhh
Confidence 44577777777644 3345665556789999999999887775532 246899999999999888765321
Q ss_pred ------CC--------E--EEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCc------eEEEEeC
Q 014603 134 ------GA--------N--ILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT------VALVIIN 191 (422)
Q Consensus 134 ------gd--------~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~ 191 (422)
|| + |+++.++|+++...++..|++++.++.+ .++.+|++.|++.+++++ .++++++
T Consensus 166 ~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~ 243 (486)
T 1js3_A 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATL 243 (486)
T ss_dssp HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred hhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 32 3 7889999999999999999999999874 467899999999887654 3788999
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC-ccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP-MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
|+||||.+ +++++|+++|+++|+++++|++|+.+.+....... +..+... + .++.++||++++| +++|+++++
T Consensus 244 ~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~a-d-si~~~~hK~~~~p-~~~G~l~~~ 317 (486)
T 1js3_A 244 GTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFA-D-SFNFNPHKWLLVN-FDCSAMWVK 317 (486)
T ss_dssp SCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGC-S-EEEECHHHHSSCC-SSCEEEEES
T ss_pred CCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCcccc-C-eeEEchhhhcCCC-cceEEEEEe
Confidence 99999988 78999999999999999999999875432111111 1112111 2 5567899997665 789999997
Q ss_pred CCCCcccchhH-HHHHH---hhhhh------------------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014603 271 DPNGILQDSGI-VDSIK---SFLNI------------------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADI 328 (422)
Q Consensus 271 ~~~~~~~~~~~-~~~~~---~~~~~------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 328 (422)
++ .. .+.+. .+... +.....+.++++...+ ...++.+..++..+++++
T Consensus 318 ~~-------~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~---g~~g~~~~~~~~~~~a~~ 387 (486)
T 1js3_A 318 RR-------TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY---GVKGLQAYIRKHVQLSHE 387 (486)
T ss_dssp CH-------HHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CH-------HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH
Confidence 52 22 22221 00000 0011223444444433 346788889999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHH
Q 014603 329 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALE 405 (422)
Q Consensus 329 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~ 405 (422)
+.+.|+++|++.+...|..+.+ .++++... ....++...+.++ |+.+.++..+...+++|++++ +++++++
T Consensus 388 l~~~L~~~~~~~~~~~~~~~~v-~f~~~~~~----~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~ 461 (486)
T 1js3_A 388 FEAFVLQDPRFEVCAEVTLGLV-CFRLKGSD----GLNEALLERINSA-RKIHLVPCRLRGQFVLRFAICSRKVESGHVR 461 (486)
T ss_dssp HHHHHHHCTTEEECSCCCSSEE-EEEESSCH----HHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred HHHHHhcCCCeEEeCCCceeEE-EEEecChH----HHHHHHHHHHHhc-CCEEEEEEEECCEEEEEEEeCCCCCCHHHHH
Confidence 9999999988885434554444 34554210 0135566666544 654433333444678999985 5789999
Q ss_pred HHHHHHHHHHHHhcc
Q 014603 406 DGLGRMKAFYDRHAK 420 (422)
Q Consensus 406 ~~~~~l~~~~~~~~~ 420 (422)
+++++|+++++++.+
T Consensus 462 ~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 462 LAWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877643
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=224.74 Aligned_cols=296 Identities=12% Similarity=0.091 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHH-HHHHHHHHHhcC--CCCEEEecCCCccchHHHHhhCCCeEEEeeccC-
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCT-QAIEVILTVLAR--PGANILLPRPGFPYYEARATHSHLEVRHFDLLP- 165 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~-~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~- 165 (422)
.++++.+.+++.+.+| .+++ +++|+|+| .++..++.++.. +|+.|++++++|+.+...++..|++++.++..+
T Consensus 132 ~~~~~~~~~~la~~~g--~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~ 208 (456)
T 2z67_A 132 YALTNKILESFFKQLG--LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLD 208 (456)
T ss_dssp HHHHHHHHHHHHHHTT--CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHHHcC--CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEecc
Confidence 3444445555554444 3444 99999999 455545555433 678899999999999999999999998888643
Q ss_pred CCCcccCHHHHHHhh-c----CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccc
Q 014603 166 AKGWEVDLDAVEALA-D----ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240 (422)
Q Consensus 166 ~~~~~~d~~~l~~~~-~----~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~ 240 (422)
++++.+|++.|++.+ + .++.++++++|+||||.+ +++++|.++|+++|+++++|++|+....+ ..+.....
T Consensus 209 ~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i---~~l~~I~~la~~~g~~v~vD~A~~~~~~g-~~~~~~~~ 284 (456)
T 2z67_A 209 GDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNS---DDIVEIAKICENYDIPHIINGAYAIQNNY-YLEKLKKA 284 (456)
T ss_dssp TTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHH-HHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCc---CCHHHHHHHHHHcCCcEEEECcchHHHHH-hhHHHHHh
Confidence 345789999999988 4 366777889999999999 56888889999999999999998764431 10111111
Q ss_pred c--CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhcc-CcchHHHHHHHHHHhhchHHHHHH
Q 014603 241 F--GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS-DPATFIQGAVPQILEKTEEEFFSK 317 (422)
Q Consensus 241 ~--~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~ 317 (422)
+ ..| +++.|++|++ ..+.++|++++++ +++++.+........ ..+.+.+.++...+ ...++++
T Consensus 285 ~~~~~D---~~~~s~hK~~-~~p~g~G~l~~~~-------~~~~~~l~~~~~g~~~~~~~~~~~aal~~l---~~~~~~~ 350 (456)
T 2z67_A 285 FKYRVD---AVVSSSDKNL-LTPIGGGLVYSTD-------AEFIKEISLSYPGRASATPVVNTLVSLLSM---GSKNYLE 350 (456)
T ss_dssp HTSCCS---EEEEEHHHHH-CCCSSCEEEEESC-------HHHHHHHHTTSCSCBCSHHHHHHHHHHHHH---HHHHHHH
T ss_pred hCCCCC---EEEEcCCCCc-CCCCCeEEEEEcC-------HHHHhhcCcCCCCCCCCCHHHHHHHHHHHH---HHHHHHH
Confidence 2 222 6788999974 4557899999853 456666643322111 11223333333333 3467888
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCe---EEe------cCC
Q 014603 318 ITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV---IVL------PGI 385 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi---~v~------~g~ 385 (422)
..++..++++++.+.|++++ ++. +..|. .++++.+... + ...++...|. ++|+ .+. +|.
T Consensus 351 ~~~~~~~~~~~l~~~L~~~~~~~g~~-v~~~~--~~v~~~~~~~---~--~~~~l~~~L~-~~gi~~~rv~~~~g~f~G~ 421 (456)
T 2z67_A 351 LVKNQKNSKKLLDELLNDLSKKTGGK-FLDVE--SPIASCISVN---S--DPVEIAAKLY-NLRVTGPRGIKKTDHFGNC 421 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCC-BCCCC--CSSEEEEECS---S--CHHHHHHHHH-HTTEESCEEECTTCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCE-ecCCC--CeEEEEEecc---c--HHHHHHHHHH-HcCCCcceEEeecCccccc
Confidence 89999999999999999885 665 33455 3445555111 0 1356666664 4464 443 133
Q ss_pred CCCC--CCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 386 TVGL--KDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 386 ~~~~--~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
.|.. .+++|++++ ++++++++++++|++++
T Consensus 422 ~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 422 YLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 3322 479999998 78999999999998754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=220.68 Aligned_cols=342 Identities=11% Similarity=0.025 Sum_probs=222.8
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC---CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA---RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
.+|+.+|||..|......+ ..+|.+.+++.+++... ....|+. ....++++++++.+.+..+ ...+.+++++|
T Consensus 60 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~s 135 (472)
T 1ohv_A 60 VDGNRMLDLYSQISSIPIG-YSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMAC 135 (472)
T ss_dssp TTSCEEEESSHHHHTCSSC-BTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESS
T ss_pred CCCCEEEECCCCHhhcccC-CCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCC
Confidence 3588899999887653233 36899999999886421 1113433 3357899999997766443 35679999999
Q ss_pred HHHHHHHHHHHhc--------C-----------------CC---CEEEecCCCccchHHHHh-hCCCeE-----------
Q 014603 119 CTQAIEVILTVLA--------R-----------------PG---ANILLPRPGFPYYEARAT-HSHLEV----------- 158 (422)
Q Consensus 119 ~~~a~~~~~~~l~--------~-----------------~g---d~Vl~~~~~~~~~~~~~~-~~g~~~----------- 158 (422)
|++|++.+++.+. . +| ++|++.+++||++...+. ..+...
T Consensus 136 GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~ 215 (472)
T 1ohv_A 136 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW 215 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCC
T ss_pred chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCC
Confidence 9999999998763 1 45 899999999998765543 223211
Q ss_pred EEeeccCC--C---C--c-----ccCHHHHHHhhcC------CceEEEEeCCCCCccc-ccCHHHHHHHHHHHHHcCcEE
Q 014603 159 RHFDLLPA--K---G--W-----EVDLDAVEALADE------NTVALVIINPGNPCGN-VYTYQHLQKIAETAKKLGIMV 219 (422)
Q Consensus 159 ~~~~~~~~--~---~--~-----~~d~~~l~~~~~~------~~~~i~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~l 219 (422)
..+++... . . + ..|++.|++.+++ +++++++...+|++|. .++.+.+++|.++|++||+++
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 295 (472)
T 1ohv_A 216 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 295 (472)
T ss_dssp CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 11121100 0 0 0 1267888888765 5666655555788996 578999999999999999999
Q ss_pred EEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchH
Q 014603 220 IADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATF 298 (422)
Q Consensus 220 i~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 298 (422)
|+||+|+++.+.|.. ..+..++.. ..+.+.||||.+ +.| |+++ + +++. .+.... ..+.+.+++
T Consensus 296 i~DEv~~g~g~~g~~-~~~~~~gv~-~~~Di~t~sK~~-l~G---G~~~-~--------~~~~-~~~~~~~~~T~~~~~~ 359 (472)
T 1ohv_A 296 LVDEVQTGGGSTGKF-WAHEHWGLD-DPADVMTFSKKM-MTG---GFFH-K--------EEFR-PNAPYRIFNTWLGDPS 359 (472)
T ss_dssp EEECTTTTTTTTSSS-SGGGGGCCS-SCCSEEEECGGG-SSE---EEEE-C--------GGGS-CSSSSSSCCSSSSCHH
T ss_pred EEeCcccCCCCCCCc-hhccccCCC-CCCCEEEEcccc-ccC---CccC-c--------hhhc-ccccccccCccCccHH
Confidence 999999977665532 233333321 001244788985 344 6765 3 1221 111111 223466888
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC----CC-CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHH
Q 014603 299 IQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI----PC-ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKL 373 (422)
Q Consensus 299 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 373 (422)
+++++.++|+...+ +...++++++++++++.|+++ |. +. ...+. |.++++.++... ...++...+
T Consensus 360 ~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~-~~~~~-g~~~~~~~~~~~-----~~~~~~~~l 429 (472)
T 1ohv_A 360 KNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFIS-RVRGR-GTFCSFDTPDES-----IRNKLISIA 429 (472)
T ss_dssp HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCE-EEEEE-TTEEEEECSSHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEE-eecCC-ceEEEEEeCChh-----HHHHHHHHH
Confidence 99988888875322 234566777777777777653 32 22 11233 567777765310 245666666
Q ss_pred HHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 374 AKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 374 ~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+ ++||.+.|+. .+++|++++ +++++|++++++|+++++++
T Consensus 430 ~-~~Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 430 R-NKGVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp H-HTTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred H-HCCeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5 5699999853 578999876 78999999999999998753
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-29 Score=237.91 Aligned_cols=334 Identities=13% Similarity=0.076 Sum_probs=223.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|.|.+++.+++.......|+ .....++.+++++++ + ..+.+++++||++|
T Consensus 98 dG~~yiD~~~~~~~~~lG-h~~p~V~~Av~~q~~~~~~~~~~-~~~~~~Lae~L~~~~------p-~~~~v~~~nSGseA 168 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFG-HSHPVIRAAVERALAVGLNLSTQ-TENEALFAEAVCDRF------P-SIDLVRFTNSGTEA 168 (465)
Confidence 688999999988543222 35789999999998774333443 334567777777776 2 45789999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHh----hCCC--eEEEeeccCCCCcccCHHHHHHhhc---CCceEEEEeC
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARAT----HSHL--EVRHFDLLPAKGWEVDLDAVEALAD---ENTVALVIIN 191 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~----~~g~--~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~ 191 (422)
+..+++... ..+++|++.+++|+++...+. ..|. .+..++ + -|++.|++.++ +++++++ ++
T Consensus 169 ~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~------~-~d~~~l~~~l~~~~~~~aavi-~e 240 (465)
T 2yky_A 169 NLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV------Y-NDVEGTADLLKRHGHDCAAIL-VE 240 (465)
Confidence 999998753 345899999999998765443 1122 112221 1 27788888886 4555555 45
Q ss_pred C-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 192 P-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 192 p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
| ++++|.+ .+.+++++|.++|+++|+++|+||+|+ + ..|.. .....++.. ..+.||||.+++ |+|+||+++
T Consensus 241 pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~-~a~~~~gv~---pDi~t~sK~lg~-G~piG~v~~ 313 (465)
T 2yky_A 241 PMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGG-GAQEMLGIS---ADLTTLGKYIGG-GMSFGAFGG 313 (465)
Confidence 5 5669964 567889999999999999999999999 6 33321 122222221 235589999865 999999998
Q ss_pred eCCCCcccchhHHHHHHh------hhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CCC
Q 014603 270 SDPNGILQDSGIVDSIKS------FLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP---CIT 340 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~ 340 (422)
+ +++++.+.. ....+.+.++++++++.++|+...+ +...++++++.+++++.|+++. ++.
T Consensus 314 ~--------~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 382 (465)
T 2yky_A 314 R--------RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVENQAP 382 (465)
Confidence 6 357777665 1234457788999999888876432 2345566666666666665541 222
Q ss_pred CCCCCCCceEEEEecCcccc---c-----CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 014603 341 CPKKPEGSMFVMVKLNYSLL---E-----GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 341 ~~~~~~~g~~~~~~~~~~~~---~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
...+..|.++++.++.... . ......++...++ ++||++.|+.. . . +++.++++++++++++|+
T Consensus 383 -~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~~-~--~---~s~~~t~edid~~l~~l~ 454 (465)
T 2yky_A 383 -LQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRGM-Y--A---LSLEIADAGRDAFAEALA 454 (465)
Confidence 2234567788887753100 0 0001334555554 57999998762 2 1 677789999999999999
Q ss_pred HHHHHhc
Q 014603 413 AFYDRHA 419 (422)
Q Consensus 413 ~~~~~~~ 419 (422)
++++++.
T Consensus 455 ~~l~~~~ 461 (465)
T 2yky_A 455 DFIGEQR 461 (465)
Confidence 9987753
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-25 Score=211.19 Aligned_cols=345 Identities=13% Similarity=0.064 Sum_probs=210.3
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC------CCCCHHHHHHHHHHHhhcCCCCCCCCC---EEEe
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS------TVGILPARRAIADYLNRDLPYKLSPDD---VYLT 116 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~l~~~~~~~~~~~~---i~~~ 116 (422)
..|.|-.+. + .++|.|++++...+.+.....|+. .....++++...+.+.+.+| .+.+. .+++
T Consensus 55 ~~i~lias~-----n-~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g--~~~~~~~~~v~~ 126 (490)
T 2a7v_A 55 RGLELIASE-----N-FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQP 126 (490)
T ss_dssp HSEECCTTC-----C-CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT--CCTTTEEEECCC
T ss_pred cCceEECCC-----C-CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcC--CCcccCceEEeC
Confidence 456665432 3 368999999998876543223332 12234677333333333333 34432 3556
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHH--------HHhhCCCeE--EEeeccCCCCcccCHHHHHHhhc-CCce
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEA--------RATHSHLEV--RHFDLLPAKGWEVDLDAVEALAD-ENTV 185 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~--~~~~~~~~~~~~~d~~~l~~~~~-~~~~ 185 (422)
+||++|+..++.++++|||+|+++++.|.++.. .+...|..+ +.+++++ +++.+|++++++.+. .+++
T Consensus 127 ~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~-~~~~iD~d~le~~l~~~~~k 205 (490)
T 2a7v_A 127 YSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPR 205 (490)
T ss_dssp SSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCS
T ss_pred CchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc-ccCCcCHHHHHHHHhhcCCc
Confidence 688999999999999999999999998865321 223445433 3444433 346799999999875 3678
Q ss_pred EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee
Q 014603 186 ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264 (422)
Q Consensus 186 ~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~ 264 (422)
+++++.++||+ . .++++|.++|+++|+++++|++|. ++.+.|..+.++. ..+ +++.|+||++ .|+|.
T Consensus 206 lIi~~~s~~~~--~---~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aD---iv~~S~hK~l--~Gp~G 273 (490)
T 2a7v_A 206 LIIAGTSAYAR--L---IDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HAD---IVTTTTHKTL--RGARS 273 (490)
T ss_dssp EEEECCSSCCS--C---CCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCS---EEEEESSGGG--CSCSC
T ss_pred EEEEcCCCCCC--c---ccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCC---EEEECCcccC--ccccc
Confidence 88888888875 3 258899999999999999999975 3333343333332 122 8889999986 45667
Q ss_pred EEEEeeCCCCccc-------chhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 265 GWLVTSDPNGILQ-------DSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 265 G~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
|++++++.-...+ ..++.++++.... ..++++....+++..++.......+++..+++.++++.+.+.|++
T Consensus 274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~ 353 (490)
T 2a7v_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE 353 (490)
T ss_dssp EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875200000 0024455554432 224556555666666665433234577888999999999999998
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-----CCCeEEEEec------cChHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRITFA------VEPSAL 404 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~------~~~~~l 404 (422)
. |+.+...+....++|+.+.... .+..+ +..++++.||.+..+..++ ....+|++.. .+++++
T Consensus 354 ~-G~~v~~~~t~t~lv~vdl~~~g----~~~~~-~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~ 427 (490)
T 2a7v_A 354 R-GYSLVSGGTDNHLVLVDLRPKG----LDGAR-AERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 427 (490)
T ss_dssp T-TCEEGGGSCSSSEEEEECTTTT----CCHHH-HHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred c-CcEEecCCCCCeEEEEEeCCCC----CCHHH-HHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHH
Confidence 7 7774322334567888875421 13444 4555678899998543332 2578999773 468999
Q ss_pred HHHHHHHHHHHHH
Q 014603 405 EDGLGRMKAFYDR 417 (422)
Q Consensus 405 ~~~~~~l~~~~~~ 417 (422)
+++++.|.+++..
T Consensus 428 ~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 428 RRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=206.01 Aligned_cols=283 Identities=17% Similarity=0.146 Sum_probs=197.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH-----hhCCCeEEEee
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA-----THSHLEVRHFD 162 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~-----~~~g~~~~~~~ 162 (422)
...++++.++++.+ .+.+++++||++|+.. +..++++||+|+++.++|++....+ ...|.+++.++
T Consensus 68 ~~~~l~~~la~l~g--------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 68 TRFAYERCVAALEG--------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp HHHHHHHHHHHHHT--------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHhC--------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 35678888888872 2367888888999998 5678899999999999998655543 33588888876
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~ 242 (422)
.+ |++.+++.++++++++++++|+||+|.+++ +++|+++|+++|+++|+|++|+...+. .++ .++
T Consensus 139 ~~-------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~----~~~-~~g 203 (400)
T 3nmy_A 139 LT-------DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQ----RPL-SLG 203 (400)
T ss_dssp TT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC----CGG-GGT
T ss_pred CC-------CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC----Chh-hcC
Confidence 42 789999999989999999999999999975 888999999999999999999753221 111 223
Q ss_pred CCCCeEEEecCccccCCCCceeEE--EEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGW--LVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
. .+++.|++|.++++|.++|. ++..+ +++.+++..... .....++..++++...++. +..+.
T Consensus 204 ~---div~~S~sK~l~g~g~~~gG~~vv~~~-------~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-----l~~r~ 268 (400)
T 3nmy_A 204 A---DLVVHSATKYLNGHSDMVGGIAVVGDN-------AELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-----LPLRM 268 (400)
T ss_dssp C---SEEEEETTTTTTCSSSCCCEEEEECSC-------HHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-----HHHHH
T ss_pred C---cEEEecCccccCCCCCcceeEEEEeCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-----HHHHH
Confidence 3 38899999999888888766 44432 567777766553 3345667777776666664 45566
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec
Q 014603 320 DILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP 383 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 383 (422)
++..++.+.+.+.|++.|.+..+..|. .|.++++.++... .....++..+ +-.++.+..
T Consensus 269 ~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~----~~~~~~~~~l-~~~~~~~s~ 343 (400)
T 3nmy_A 269 RAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF----DAAKRFCEKT-ELFTLAESL 343 (400)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH----HHHHHHHHHC-SSSEECSCC
T ss_pred HHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH----HHHHHHHHcC-CcceEecCC
Confidence 777888889999999887654332332 3667888885310 0122233322 333333333
Q ss_pred CCCCC-----------------------CCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 384 GITVG-----------------------LKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 384 g~~~~-----------------------~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
|..+. .++.+|+|++. |+.+.+++.|+++++
T Consensus 344 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 344 GGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERALV 397 (400)
T ss_dssp CSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred CCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence 43221 14789999996 345556677777775
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=218.49 Aligned_cols=291 Identities=11% Similarity=0.062 Sum_probs=194.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEee
Q 014603 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFD 162 (422)
Q Consensus 83 y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~ 162 (422)
+.+.....++++.+++ ++ .+ +.+++++|+++++..++.+++++||+|++++++|+++...+...|.+++.++
T Consensus 53 ~~~~~~~~~~~~~la~-~g------~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~ 124 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-HS------DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIE 124 (446)
T ss_dssp TSCSSHHHHHHHHHCS-CT------TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECE
T ss_pred cCcchHHHHHHHHHHh-cC------CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEe
Confidence 3444556788888888 73 33 6799999999999999999999999999999999999998888999998888
Q ss_pred ccCCCC----cccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCCC
Q 014603 163 LLPAKG----WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH-LAFGNTPFVP 237 (422)
Q Consensus 163 ~~~~~~----~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~-~~~~~~~~~~ 237 (422)
...+++ +.+|++.| +.++++++++++ .|++|.+++ +++|+++|+++|+++|+|++|+. +.|.+. ..+
T Consensus 125 ~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~ 196 (446)
T 2x3l_A 125 THQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDS 196 (446)
T ss_dssp EEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCC
T ss_pred CeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCC
Confidence 732222 46788877 456788999999 555999976 77889999999999999999986 334443 233
Q ss_pred ccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHH
Q 014603 238 MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFF 315 (422)
Q Consensus 238 ~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~ 315 (422)
....+.+ +++.|+||++ .++.++||+++++.. . + ...+..... .+++++....+++..+++.......
T Consensus 197 ~~~~g~D---i~~~S~~K~l-~~~~g~g~l~~~~~~--i---~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~ 266 (446)
T 2x3l_A 197 TLNYQAD---YVVQSFHKTL-PALTMGSVLYIHKNA--P---Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDS 266 (446)
T ss_dssp GGGGTCS---EEEECHHHHS-SSCTTCEEEEEETTC--T---T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCC
T ss_pred hHHcCCC---EEEECCcccc-ccccccEEEEEcCCc--C---C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCH
Confidence 3333333 8899999963 333458999987531 1 1 223332221 2335555554444444433211112
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe-cCCCCCCCCeEE
Q 014603 316 SKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL-PGITVGLKDWLR 394 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-~g~~~~~~~~iR 394 (422)
++..++.+++.+.+++. ++.+. .+.++.++|+.++. .+..++...|.+ +||.+. +| .+++|
T Consensus 267 ~~~~~~~~~l~~~l~~~-----g~~~~-~~~~~~~l~i~~~~------~~~~~l~~~L~~-~GI~v~~~g-----~~~iR 328 (446)
T 2x3l_A 267 TLFFAKRAQLIECLENK-----GFEML-QVDDPLKLLIKYEG------FTGHDIQNWFMN-AHIYLELAD-----DYQAL 328 (446)
T ss_dssp HHHHHHHHHHHHHHHHH-----TCEEE-ECSSTTEEEEECTT------SCHHHHHHHHHH-TTEEESEEC-----SSCEE
T ss_pred HHHHHHHHHHHHHHHHc-----CCEEC-cCCCCeEEEEEeCC------cCHHHHHHHHHH-CCCEEEecC-----CCEEE
Confidence 22455555666666555 44422 33345578887752 156677766655 499997 54 36899
Q ss_pred EEec--cChHHHHHHHHHHHHHHHHh
Q 014603 395 ITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 395 is~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
++++ ++++++ +++++|+++++++
T Consensus 329 i~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 329 AILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp EECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred EEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 9998 588899 9999999988665
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=210.18 Aligned_cols=334 Identities=10% Similarity=0.047 Sum_probs=214.1
Q ss_pred CcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-------C-CC
Q 014603 63 TASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-------R-PG 134 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-------~-~g 134 (422)
.++.+...+.....+.....|....+..++++.+.+++.+.+| .+++++++|+|+|+|+..++.++. + +|
T Consensus 120 ~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g--~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G 197 (515)
T 2jis_A 120 DPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVG--WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRG 197 (515)
T ss_dssp CHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHT--CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHC
T ss_pred CHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhC--CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcC
Confidence 3445544333333233223455544545555555555555444 346789999999999998887763 2 56
Q ss_pred C------EEEecCCCccchHHHHhhCCC---eEEEeeccCCCCcccCHHHHHHhhcC------CceEEEEeCCCCCcccc
Q 014603 135 A------NILLPRPGFPYYEARATHSHL---EVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPGNPCGNV 199 (422)
Q Consensus 135 d------~Vl~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~nptG~~ 199 (422)
+ .|+++.++|+++...++..|. +++.++.+ .++.+|++.|++.+++ +++++++++|+|+||.+
T Consensus 198 ~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i 275 (515)
T 2jis_A 198 LRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF 275 (515)
T ss_dssp GGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB
T ss_pred ccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCc
Confidence 5 899999999999988888888 78888875 3567999999998865 47888999999999999
Q ss_pred cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCC-CccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV-PMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 200 ~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
. ++++|.++|+++|+++++|++|+.+........ .+..+. ...+++.|++|++++| .++|+++++++.
T Consensus 276 ~---~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~--~aD~v~~s~hK~l~~p-~g~G~l~~~~~~----- 344 (515)
T 2jis_A 276 D---PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQ--RADSVAWNPHKLLAAG-LQCSALLLQDTS----- 344 (515)
T ss_dssp C---CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG--GCSEEEECTTSTTCCC-SCCEEEEESCCS-----
T ss_pred c---CHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCc--cCCEEEECcccccCCC-CCeeEEEEeChH-----
Confidence 4 588889999999999999999987665322111 122221 1127888999997644 568999997531
Q ss_pred hhHHHHH----Hhhh-h--------hc-c--------CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 279 SGIVDSI----KSFL-N--------IS-S--------DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 279 ~~~~~~~----~~~~-~--------~~-~--------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
++.++. ..+. . .. + ....+.++++..++. ..++++..++..++++++.+.|+++
T Consensus 345 -~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~ 420 (515)
T 2jis_A 345 -NLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG---DQGLERRIDQAFVLARYLVEEMKKR 420 (515)
T ss_dssp -CHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 133321 1111 0 00 0 011234444444443 4668888899999999999999999
Q ss_pred CCCCCCCCCCCceEEEEecCcccccC---CCCH-H-------HHHHHHHHhcCeEEecCCC-CCCCCeEEEEec---cCh
Q 014603 337 PCITCPKKPEGSMFVMVKLNYSLLEG---INSD-M-------EFALKLAKEESVIVLPGIT-VGLKDWLRITFA---VEP 401 (422)
Q Consensus 337 ~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~-~-------~~~~~l~~~~gi~v~~g~~-~~~~~~iRis~~---~~~ 401 (422)
|++.++..|..+.+.+...+.. ..+ ..+- . .+...+ .+.|+....... .+..+++|++++ +++
T Consensus 421 ~g~~~~~~~~~~~v~f~~~p~~-~~~~~~~~~~~~~l~~~~~~l~~~l-~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~ 498 (515)
T 2jis_A 421 EGFELVMEPEFVNVCFWFVPPS-LRGKQESPDYHERLSKVAPVLKERM-VKEGSMMIGYQPHGTRGNFFRVVVANSALTC 498 (515)
T ss_dssp TTEEESSCCSSSEEEEEECCGG-GTTCTTSTTHHHHHHTHHHHHHHHH-HHHTSCEEEEEEETTEEEEEEEECCCTTCCH
T ss_pred CCEEEeCCCCeeEEEEEEeCcc-ccccccchhHHHHHHHHHHHHHHHH-HhcCCEEEEEEEECCceEEEEEEeCCCCCCH
Confidence 8887554454454444333321 000 0010 1 133444 344754422111 122468999994 789
Q ss_pred HHHHHHHHHHHHHHHH
Q 014603 402 SALEDGLGRMKAFYDR 417 (422)
Q Consensus 402 ~~l~~~~~~l~~~~~~ 417 (422)
+++++++++|++++++
T Consensus 499 edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 499 ADMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987754
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-24 Score=205.15 Aligned_cols=287 Identities=20% Similarity=0.158 Sum_probs=193.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCCCeEEEe-e
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSHLEVRHF-D 162 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~-~ 162 (422)
...+++++++++++. . ..+++++|++|++.++.+++++||+|+++.++|+++...+ +..|.+++.+ +
T Consensus 59 ~~~~l~~~la~~~g~------~--~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 130 (421)
T 2ctz_A 59 TVDVLEKRLAALEGG------K--AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp HHHHHHHHHHHHHTC------S--EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred HHHHHHHHHHHHhCC------C--ceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 357899999999832 2 3456666799999999998999999999999998876654 6789888877 5
Q ss_pred ccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccc-cccccCCCCCCCcccc
Q 014603 163 LLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY-DHLAFGNTPFVPMGVF 241 (422)
Q Consensus 163 ~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~-~~~~~~~~~~~~~~~~ 241 (422)
.+ |++.+++.++++++++++++|+||+|.+++ +++|.++|+++|+++|+|++| +. .+.+. ++ ..
T Consensus 131 ~~-------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~-g~~~~---~~-~~ 195 (421)
T 2ctz_A 131 EE-------RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMG-GYLLR---PL-AW 195 (421)
T ss_dssp TC-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGG-GTSCC---GG-GG
T ss_pred CC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc-cccCC---cc-cc
Confidence 42 789999999889999999999999999976 888999999999999999999 53 23221 12 22
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCC-Cc-cc-chhHH---------------------HHHHh--hhhhccCc
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN-GI-LQ-DSGIV---------------------DSIKS--FLNISSDP 295 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~-~~-~~-~~~~~---------------------~~~~~--~~~~~~~~ 295 (422)
+. .+++.|++|.++++|.|+|++++.+.. .. .. .+.+. ...+. ........
T Consensus 196 ~~---Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~ 272 (421)
T 2ctz_A 196 GA---ALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQAL 272 (421)
T ss_dssp TC---SEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCC
T ss_pred CC---eEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCC
Confidence 33 388999999999999999998886321 11 00 00111 00000 01122244
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----------------CCceEEEEecCcc
Q 014603 296 ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP-----------------EGSMFVMVKLNYS 358 (422)
Q Consensus 296 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~g~~~~~~~~~~ 358 (422)
+++..+++...++. +..+.++..++.+++.+.|+++|++..+..| ..|..+.+.++.
T Consensus 273 ~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~- 346 (421)
T 2ctz_A 273 GPFEAWVVLLGMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG- 346 (421)
T ss_dssp CHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT-
T ss_pred CHHHHHHHHcCcch-----HHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCC-
Confidence 55555555555554 4455666668889999999998887633222 224456666642
Q ss_pred cccCCCCHHHHHHHHHHh---cCeEEecCCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHH
Q 014603 359 LLEGINSDMEFALKLAKE---ESVIVLPGITV----------------------GL-KDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~---~gi~v~~g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
..+....++.+ .++.+..|..+ +. ++.||+|++. ++++.+++.|+
T Consensus 347 -------~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~--e~~~~li~~l~ 417 (421)
T 2ctz_A 347 -------GYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHVEDLKAELK 417 (421)
T ss_dssp -------HHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHH
T ss_pred -------CHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHH
Confidence 11222333333 34444444211 11 4789999885 57888888888
Q ss_pred HHH
Q 014603 413 AFY 415 (422)
Q Consensus 413 ~~~ 415 (422)
+++
T Consensus 418 ~al 420 (421)
T 2ctz_A 418 EAL 420 (421)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=211.72 Aligned_cols=332 Identities=12% Similarity=0.056 Sum_probs=229.2
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC--------CCEEEecCHHHHHHHHHHHhcC---
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP--------DDVYLTLGCTQAIEVILTVLAR--- 132 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~--------~~i~~~~g~~~a~~~~~~~l~~--- 132 (422)
+..+.+.+...++. ....|...++..++++.+++++.+.+|.+... ...++|+|||+++..++.+...
T Consensus 92 ~~~~~~~~~~~~n~-~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~ 170 (481)
T 4e1o_A 92 PSLLGDMLADAINC-LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKI 170 (481)
T ss_dssp HHHHHHHHHHHHCC-CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHH
Confidence 44555666666654 34577777788999999999999877754322 3678999999999888776532
Q ss_pred ----------------CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC------ceEEEEe
Q 014603 133 ----------------PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN------TVALVII 190 (422)
Q Consensus 133 ----------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~ 190 (422)
+++.|+++.++|.++...+...|.+++.++.+ .++.+|++.|++.++++ +.+++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~ 248 (481)
T 4e1o_A 171 LEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCAT 248 (481)
T ss_dssp HHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 46799999999999999999899999999874 45679999999988653 5667888
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC-CCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF-VPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
.++|++|.+ +++++|+++|++||+++++|++|+...+..... ..+..+.. -..+..+++|+++.| ..+|++++
T Consensus 249 ~~~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~--aDsi~~~~hK~l~~p-~g~g~l~~ 322 (481)
T 4e1o_A 249 LGTTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEY--ADSFTFNPSKWMMVH-FDCTGFWV 322 (481)
T ss_dssp BSCTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGG--CSEEEECHHHHSSCC-SSCEEEEE
T ss_pred cCCCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCccc--CCEEEEChHHhcCCC-CceEEEEE
Confidence 999999998 679999999999999999999998753321111 11111111 125667999997655 44788887
Q ss_pred eCCCCcccchhHHHH-HHh---hh------------hhc---c-CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 014603 270 SDPNGILQDSGIVDS-IKS---FL------------NIS---S-DPATFIQGAVPQILEKTEEEFFSKITDILRETADIC 329 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~-~~~---~~------------~~~---~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 329 (422)
+++ ..... +.. +. ... + ....+.++++..++ ..++++++.++..++++++
T Consensus 323 ~~~-------~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~---g~~g~~~~~~~~~~~a~~l 392 (481)
T 4e1o_A 323 KDK-------YKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF---GVKNLQAHVRHGTEMAKYF 392 (481)
T ss_dssp SBH-------HHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred eCH-------HHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHH
Confidence 642 22211 100 00 000 0 01223344444443 3567888999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALED 406 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~ 406 (422)
.+.|+++|++.+. .+....+++++++... ....++..++.++..+.+.|+.. ....++|++++ +++++|++
T Consensus 393 ~~~L~~~~g~~~~-~~~~~~~v~f~~~~~~----~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~tt~~di~~ 466 (481)
T 4e1o_A 393 ESLVRNDPSFEIP-AKRHLGLVVFRLKGPN----SLTENVLKEIAKAGRLFLIPATI-QDKLIIRFTVTSQFTTRDDILR 466 (481)
T ss_dssp HHHHHTCTTEECC-SCCCSSEEEEEESSCH----HHHHHHHHHHHHHCSSBCEEEEE-TTEEEEEEECCCTTCCHHHHHH
T ss_pred HHHHhcCCCeEEe-cCCceeEEEEEeCCch----HHHHHHHHHHHhCCeEEEEeeEE-CCEEEEEEEeCCCCCCHHHHHH
Confidence 9999999998854 4444556677774310 02456667766553355555432 22468999976 47899999
Q ss_pred HHHHHHHHHHHhcc
Q 014603 407 GLGRMKAFYDRHAK 420 (422)
Q Consensus 407 ~~~~l~~~~~~~~~ 420 (422)
++++|+++++++.+
T Consensus 467 ~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 467 DWNLIRDAATLILS 480 (481)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-24 Score=200.60 Aligned_cols=307 Identities=15% Similarity=0.151 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-------cCCC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-------ARPG 134 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-------~~~g 134 (422)
..++++.+++.+.+... .|.+..+..++|+.++++++ . ++++++++|++|++.++.++ .++|
T Consensus 12 ~~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~------~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g 80 (390)
T 3b8x_A 12 TWDDLEYKAIQSVLDSK---MFTMGEYVKQYETQFAKTFG------S--KYAVMVSSGSTANLLMIAALFFTKKPRLKKG 80 (390)
T ss_dssp CCCHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTT
T ss_pred CCCHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHHHHC------C--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCc
Confidence 35688999999888652 35556678999999999993 2 36788888899999999998 7889
Q ss_pred CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHH
Q 014603 135 ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKK 214 (422)
Q Consensus 135 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~ 214 (422)
|+|+++.++|+++...+...|.+++.++++++ ++.+|++.|++.++++++++++++ ++|.. .++++|.++|++
T Consensus 81 ~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~---~~~~~i~~l~~~ 153 (390)
T 3b8x_A 81 DEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNP---NNFDEINKIIGG 153 (390)
T ss_dssp CEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCC---CCHHHHHHHHTT
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccCh---hhHHHHHHHHHH
Confidence 99999999999999999999999999988653 467999999999988889888875 45554 578999999999
Q ss_pred cCcEEEEcccccccc-cCCCCCCCccccCCCCCeEEEec--CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh
Q 014603 215 LGIMVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGS--ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI 291 (422)
Q Consensus 215 ~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s--~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (422)
+|+++|+|++|+... +.+ ..++.... +...| .+|.++ +| +.|++++++ +++.++++.....
T Consensus 154 ~~~~li~D~a~~~g~~~~~------~~~g~~~~-~~~~s~~~~k~~~-~g-~gG~~~~~~-------~~l~~~~~~~~~~ 217 (390)
T 3b8x_A 154 RDIILLEDNCESMGATFNN------KCAGTFGL-MGTFSSFYSNHIA-TM-EGGCIVTDD-------EEIYHILLCIRAH 217 (390)
T ss_dssp SCCEEEEECTTCTTCEETT------EETTSSSS-EEEEECCTTSSSC-SS-SCEEEEESC-------HHHHHHHHHHTBT
T ss_pred cCCEEEEECcCcccCEECC------cccccccc-eEEEEccCCCCCc-cC-CceEEEeCC-------HHHHHHHHHHHhc
Confidence 999999999998422 211 12222111 22222 245432 23 348888763 3455555432210
Q ss_pred --------------------------------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 014603 292 --------------------------------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCI 339 (422)
Q Consensus 292 --------------------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 339 (422)
....+.+..+++...+ +.+++..++.+++++++.+.|+++|++
T Consensus 218 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~~~ 292 (390)
T 3b8x_A 218 GWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-----KKLPRFISVRRKNAEYFLDKFKDHPYL 292 (390)
T ss_dssp TBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred CCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 0013334444444444 346778888889999999999998887
Q ss_pred CCCCCC-CCc-eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC---CCCCC----------------------CCe
Q 014603 340 TCPKKP-EGS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG---ITVGL----------------------KDW 392 (422)
Q Consensus 340 ~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g---~~~~~----------------------~~~ 392 (422)
.+...+ ... ..+++.++... + .+..++...| .++||.+.+. ..+.. .+.
T Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~--~-~~~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
T 3b8x_A 293 DVQQETGESSWFGFSFIIKKDS--G-VIRKQLVENL-NSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNG 368 (390)
T ss_dssp EECCCCSBCCCCEEEEEECTTS--C-CCHHHHHHHH-HHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHE
T ss_pred ccCCCCCCcccEEEEEEecCcC--c-ccHHHHHHHH-HHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCE
Confidence 633221 122 23445554210 1 1456666665 5679999873 22111 135
Q ss_pred EEEEec--cChHHHHHHHHHH
Q 014603 393 LRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 393 iRis~~--~~~~~l~~~~~~l 411 (422)
+|++++ ++++|++++++.|
T Consensus 369 l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 369 LFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp EEEECCSSCCHHHHHHHHHHT
T ss_pred EEeeCCCCCCHHHHHHHHHhh
Confidence 999997 7899999998875
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=209.74 Aligned_cols=340 Identities=11% Similarity=0.012 Sum_probs=227.5
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCC-------CCEEEecCHHHHHHHHHHHhcC----
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSP-------DDVYLTLGCTQAIEVILTVLAR---- 132 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~-------~~i~~~~g~~~a~~~~~~~l~~---- 132 (422)
+..+.+.+...++. ....|...++..++++.+++++.+.+|.+... ...++|+|||+++..++.+...
T Consensus 87 ~~~~~~~l~~~~n~-~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~ 165 (475)
T 3k40_A 87 PAIVADMLSGAIAC-IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK 165 (475)
T ss_dssp HHHHHHHHHHHHCC-CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHH
Confidence 34455556666544 33467777778899999999999887754321 3688999999998887766521
Q ss_pred ---------------CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC------ceEEEEeC
Q 014603 133 ---------------PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN------TVALVIIN 191 (422)
Q Consensus 133 ---------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~ 191 (422)
+++.|+++..+|.++...+...|.+++.++.+ .++ +|++.|++.++++ +.+++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~ 242 (475)
T 3k40_A 166 EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTL 242 (475)
T ss_dssp HHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred HhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEe
Confidence 24689999999999999999999999999875 346 9999999988653 56778889
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCCCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGN-TPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
++|++|.+ +++++|+++|++||+++++|++|+...+.. .....+..+.. -..+..+++|+++.| ..+|+++++
T Consensus 243 ~~t~~G~~---~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~--~Ds~~~~~hK~l~~p-~g~g~l~~~ 316 (475)
T 3k40_A 243 GTTNSCAF---DYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIES--ADSFNFNPHKWMLVN-FDCSAMWLK 316 (475)
T ss_dssp SCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGG--CSEEEECHHHHSSCC-SSCEEEEES
T ss_pred cCCCCcCc---CCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCccc--CCEEEECchhccCCC-CceEEEEEe
Confidence 99999998 678999999999999999999998643211 11111111111 126778999986544 457888887
Q ss_pred CCCCcccchhH-HHHHHhh--------hhhcc-Cc---chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 271 DPNGILQDSGI-VDSIKSF--------LNISS-DP---ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 271 ~~~~~~~~~~~-~~~~~~~--------~~~~~-~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
++......-.. ...+... ..... .. ..+.++++..++ ....++++.++..++++++.+.|+++|
T Consensus 317 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~~ 393 (475)
T 3k40_A 317 DPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY---GVENLQAHIRRHCNFAKQFGDLCVADS 393 (475)
T ss_dssp SGGGC---------------------------CCCGGGTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54321100000 0001000 00000 00 122333333333 356788899999999999999999999
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALEDGLGRMKAF 414 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~~~l~~~ 414 (422)
++.+. .+.....++++++... ....++..++.++.++.+.|+...+ ..++|++++ +++++|++++++|+++
T Consensus 394 g~~l~-~~~~~~iv~f~~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~g-~~~lR~~~~~~~tt~~di~~~~~~i~~~ 467 (475)
T 3k40_A 394 RFELA-AEINMGLVCFRLKGSN----ERNEALLKRINGRGHIHLVPAKIKD-VYFLRMAICSRFTQSEDMEYSWKEVSAA 467 (475)
T ss_dssp TEEES-SCCBTTEEEEEESSCH----HHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEe-cCCceEEEEEEeCCch----HHHHHHHHHHHhCCcEEEEeeEECC-EEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 98855 3444455666664310 0245677777666555565543332 568999986 5789999999999999
Q ss_pred HHHhcccC
Q 014603 415 YDRHAKKQ 422 (422)
Q Consensus 415 ~~~~~~~~ 422 (422)
.+++.+.|
T Consensus 468 ~~~~~~~~ 475 (475)
T 3k40_A 468 ADEMEQEQ 475 (475)
T ss_dssp HHHHHTCC
T ss_pred HHHHhccC
Confidence 98876543
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=206.88 Aligned_cols=284 Identities=18% Similarity=0.169 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHH-hcCCCCEEEecCCCccchHHHH----hhCCCeEEEeec
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTV-LARPGANILLPRPGFPYYEARA----THSHLEVRHFDL 163 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~-l~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~ 163 (422)
..++++.+++++ +.+++++++++|++.+++++..+ ..++||+|+++.++|+.+...+ +..|++++.++.
T Consensus 110 ~~~~~~~la~~~------g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~ 183 (438)
T 1wyu_A 110 TFEYQTMIAELA------GLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL 183 (438)
T ss_dssp HHHHHHHHHHHH------TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHh------CCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC
Confidence 446677777776 34667889999999554444433 2468999999999998876444 458999988886
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccc-ccccccCCCCCCCccccC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV-YDHLAFGNTPFVPMGVFG 242 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~-~~~~~~~~~~~~~~~~~~ 242 (422)
+++.+|++. ++++++++++++| ||||.+. ++++|.++|+++|+++|+|.. ++...+ . .+ ..++
T Consensus 184 ---~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~---~l~~i~~la~~~g~~vivd~d~~a~g~~---~-~~-~~~g 247 (438)
T 1wyu_A 184 ---EGGRTPLPE----VGEEVGAVVVQNP-NFLGALE---DLGPFAEAAHGAGALFVAVADPLSLGVL---K-PP-GAYG 247 (438)
T ss_dssp ---BTTBCCCCC----CCTTEEEEEEESS-CTTSBCC---CHHHHHHHHHHTTCEEEEECCTTGGGTB---C-CH-HHHT
T ss_pred ---cCCccCHHH----hCCCeEEEEEECC-CCCeEEe---cHHHHHHHHHHcCCEEEEEechhhccCc---C-CC-ccCC
Confidence 234567665 5678999999999 9999996 688889999999999996632 221111 1 11 2333
Q ss_pred CCCCeEEEecCccccC----CCCceeEEEEeeCCCCcccchhHHHHHHhh-------------------------hhhcc
Q 014603 243 SIVPVLTLGSISKRWI----VPGWRLGWLVTSDPNGILQDSGIVDSIKSF-------------------------LNISS 293 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~----~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~ 293 (422)
.+ ++++| +|.|+ +.|+++|++++++ ++.+.+... .....
T Consensus 248 ~D---~~~~s-~kk~~~~~~~~Gp~~G~l~~~~--------~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~ 315 (438)
T 1wyu_A 248 AD---IAVGD-GQSLGLPMGFGGPHFGFLATKK--------AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKA 315 (438)
T ss_dssp CS---EEEEE-CTTTTCCCGGGCSCCEEEEECG--------GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGS
T ss_pred CC---EEEEC-CcccCCCccCCCCCeeEEEEcH--------HHHHhCCCceeccccccCCCcceeeeccccccccchhcc
Confidence 33 66666 55443 4466899999864 232222100 00011
Q ss_pred Ccc-----hHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHH
Q 014603 294 DPA-----TFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDME 368 (422)
Q Consensus 294 ~~~-----~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 368 (422)
+++ .+...++..++......++++..+++.++++++.+.|++++++.+. .+. ..+.++.+... .+..+
T Consensus 316 t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~-~~~~~~~~~~~-----~~~~~ 388 (438)
T 1wyu_A 316 KSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPF-TPK-PFFNEFALALP-----KDPEA 388 (438)
T ss_dssp SCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEEC-SCS-SBCSEEEEECS-----SCHHH
T ss_pred cCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEC-CCC-CeEEEEEEeCC-----CCHHH
Confidence 221 1222222222443334568888999999999999999999888743 343 33322223211 14677
Q ss_pred HHHHHHHhcCeEE--ecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 369 FALKLAKEESVIV--LPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 369 ~~~~l~~~~gi~v--~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
+..+|.+ +||.+ .++..|. ++++|||++ ++++++++++++|++++
T Consensus 389 ~~~~L~~-~gi~v~~~~~~~~~-~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 389 VRRALAE-RGFHGATPVPREYG-ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHHHHHH-TTCCCCEECCTTSC-SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-CCceeccccccccC-CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 7777754 59998 6776554 789999998 78999999999998764
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=203.28 Aligned_cols=331 Identities=13% Similarity=0.031 Sum_probs=220.8
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC--------CCC--CCCCCHHHHHHHHHHHhhcCCCCCCC-CCEEE-
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN--------CYS--STVGILPARRAIADYLNRDLPYKLSP-DDVYL- 115 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~--------~y~--~~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~- 115 (422)
+.|.+..|+ +.|++|+++|.+.+.+...+ ... ....+.+.|+.++++++ ++. ++|+|
T Consensus 28 ~yl~~agpt-----~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~ 96 (386)
T 3qm2_A 28 VFNFSSGPA-----MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFC 96 (386)
T ss_dssp CEECCSSSC-----CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEE
T ss_pred CccccCCCC-----CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEE
Confidence 556665555 67899999998766431100 111 13568899999999994 433 46888
Q ss_pred ecCHHHHHHHHHHHhcCCCCEEEecCCCcc--chHHHHhhCCCeEEEeecc-CCCCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 116 TLGCTQAIEVILTVLARPGANILLPRPGFP--YYEARATHSHLEVRHFDLL-PAKGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~--~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
|+|+|+++++++..++++||+|++...+++ .+...++..| .+..++.+ +..+..++++.++..++++++++.+++.
T Consensus 97 t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~ 175 (386)
T 3qm2_A 97 HGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPN 175 (386)
T ss_dssp ESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSE
T ss_pred cCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECC
Confidence 699999999999999999999876554443 3455566778 88888765 1233336778888888889999999988
Q ss_pred CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
.|.||+. .| +++|. +|+++++|.+++. |..+.++..++ +.+.|.+|++|.+| +|++++++
T Consensus 176 et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~----g~~pidv~~~~-----~~~~s~hK~lGP~G--~g~l~v~~ 236 (386)
T 3qm2_A 176 ETIDGIAIDE---TPDFG-----PEVVVTADFSSTI----LSAPLDVSRYG-----VIYAGAQKNIGPAG--LTLVIVRE 236 (386)
T ss_dssp ETTTTEECCC---CCCCC-----TTCCEEEECTTTT----TSSCCCGGGCS-----EEEEETTTTTCCTT--EEEEEEEG
T ss_pred cCCcCEecCc---hhhhc-----CCCEEEEEccccc----CCCCCCccccC-----EEEEecccccCCCc--cEEEEECH
Confidence 8999996 54 44443 6999999999987 54455555553 46689999998777 78888864
Q ss_pred CCCccc---chhHHH--HHHhhhhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCC
Q 014603 272 PNGILQ---DSGIVD--SIKSFLNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCI-TCPKK 344 (422)
Q Consensus 272 ~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~ 344 (422)
...... .+.+.+ .........++++....+++.++++...+. .++.+.++.+++++++++.|+++ ++ .....
T Consensus 237 ~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~ 315 (386)
T 3qm2_A 237 DLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVA 315 (386)
T ss_dssp GGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBC
T ss_pred HHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCC
Confidence 321000 011111 111111223577888888888888865555 78999999999999999999988 44 21111
Q ss_pred C--CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 345 P--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 345 ~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+ .....+.+.++... .+.+++.. ++++||.+.+|..+ .+.+|+|+. ++++|++++++.|+++.++.
T Consensus 316 ~~~rs~~iv~f~~~~~~-----~~~~~~~~-L~~~gI~~~~g~~~--~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 316 QANRSRMNVPFQLADNT-----LDKVFLEE-SFAAGLHALKGHRV--VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp GGGBCSSEEEEEESSGG-----GHHHHHHH-HHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCceEEEEECCCcc-----ccHHHHHH-HHHCCCEEeCCCCC--cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2 22335556665311 13455555 46779999888654 256999998 68999999999999987663
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=200.03 Aligned_cols=326 Identities=12% Similarity=0.050 Sum_probs=224.5
Q ss_pred CCCcHHHHHHHHHHhhCCCCCCCC----C------CCCCHHHHHHHHHHHhhcCCCCCCC-CCEEE-ecCHHHHHHHHHH
Q 014603 61 FRTASVAVDAIVHSVRSARFNCYS----S------TVGILPARRAIADYLNRDLPYKLSP-DDVYL-TLGCTQAIEVILT 128 (422)
Q Consensus 61 ~~~~~~v~~a~~~~~~~~~~~~y~----~------~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~-~~g~~~a~~~~~~ 128 (422)
.+.|++|.++|.+.+.+...+.-+ . ...+.+.|+.++++++ ++. ++|+| ++|+|+++++++.
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLA------VPDNYKVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCCeEEEEcCchHHHHHHHHH
Confidence 588999999999987642111100 0 1235677888899883 443 57888 5899999999999
Q ss_pred HhcCC--CCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHH
Q 014603 129 VLARP--GANILLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 129 ~l~~~--gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
.+..+ ||+|++...++++ +...++..|..++.++.+ .++..+++.++..++++++++.+++..|.||++.|.
T Consensus 96 ~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~--~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi-- 171 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKL--GSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF-- 171 (377)
T ss_dssp HHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCC--SSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS--
T ss_pred hccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccC--CCcCCCCChHHhccCCCccEEEEeCccCchheEchh--
Confidence 98765 8999877766644 344566677766666653 234467777777788889999999999999999875
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc---hhH
Q 014603 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD---SGI 281 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~---~~~ 281 (422)
+|+++|+++++|.+++. |..+.++..++ +++.|.+|++|.+| +|++++++....... +.+
T Consensus 172 ------i~~~~~~~~~vD~~q~~----g~~~id~~~~~-----~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~ 234 (377)
T 3e77_A 172 ------IPDVKGAVLVCDMSSNF----LSKPVDVSKFG-----VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSV 234 (377)
T ss_dssp ------CCCCTTCCEEEECTTTT----TSSCCCGGGCS-----EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGG
T ss_pred ------hhccCCCEEEEEccccc----CCCCCchhhcC-----EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCch
Confidence 36688999999999987 44445555543 46789999998788 688887643211100 112
Q ss_pred HH--HHHhhhhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCC--CCceEEEEec
Q 014603 282 VD--SIKSFLNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCP-KKP--EGSMFVMVKL 355 (422)
Q Consensus 282 ~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~--~~g~~~~~~~ 355 (422)
.+ .........++|+....+++.++|+...+. .++.+.++.+++.+++++.|+++|++.+. ..+ ..+..+.+.+
T Consensus 235 ~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~ 314 (377)
T 3e77_A 235 LEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRI 314 (377)
T ss_dssp GCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEE
T ss_pred hhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEc
Confidence 11 111111234588888888888888865555 79999999999999999999999887621 111 2233455566
Q ss_pred CcccccCCCC-HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 356 NYSLLEGINS-DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 356 ~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.... ..+ +..++..+ .++||.+.+|... .+.+|+|+. +++++++++++.|+++.++.
T Consensus 315 ~~~~~--~~~~~~~~l~~l-~~~Gi~~~~g~~~--~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 315 GNAKG--DDALEKRFLDKA-LELNMLSLKGHRS--VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp SSTTC--CHHHHHHHHHHH-HHTTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC--chhHHHHHHHHH-HHCCcEEeCCCCc--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 53100 000 12444544 4679999888642 467999998 68999999999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-24 Score=197.42 Aligned_cols=323 Identities=14% Similarity=0.091 Sum_probs=222.0
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC----C------CCCCHHHHHHHHHHHhhcCCCCCC-CCCE
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS----S------TVGILPARRAIADYLNRDLPYKLS-PDDV 113 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~----~------~~g~~~lr~~ia~~l~~~~~~~~~-~~~i 113 (422)
..+.+|+-|. -+.|++|.++|.+.+.+...+..+ . ...+.+.|+.++++++ ++ +++|
T Consensus 4 ~~~~~f~pgp------t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~------~~~~~~v 71 (361)
T 3m5u_A 4 MRKINFSAGP------STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE------LNDDYEV 71 (361)
T ss_dssp CCCEECCSSS------CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT------CCTTEEE
T ss_pred cceEeecCCC------CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceE
Confidence 4567777665 367899999999987532111110 0 1235677888899883 43 4578
Q ss_pred EE-ecCHHHHHHHHHHHhcCCCCEEEecCC-Cc-cchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEe
Q 014603 114 YL-TLGCTQAIEVILTVLARPGANILLPRP-GF-PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII 190 (422)
Q Consensus 114 ~~-~~g~~~a~~~~~~~l~~~gd~Vl~~~~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 190 (422)
+| |+|+|+++++++..+. +||++++... .| +.+...++..|.++..++.+..+.+..+++. + ++++++++.++
T Consensus 72 ~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~ 147 (361)
T 3m5u_A 72 LFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYIC 147 (361)
T ss_dssp EEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEE
T ss_pred EEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEe
Confidence 87 9999999999999988 7886532222 22 2345566778999999988654322245555 3 78889999999
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
+..|.||++.+. +++ +|+++++|.+++. |..+.++..+ .+++.|.+|++|.+| +|+++.+
T Consensus 148 ~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~----g~~~id~~~~-----d~~~~s~~K~~gp~G--~g~l~~~ 207 (361)
T 3m5u_A 148 SNNTIYGTQYQN--------YPK-TKTPLIVDASSDF----FSRKVDFSNI-----ALFYGGVQKNAGISG--LSCIFIR 207 (361)
T ss_dssp SEETTTTEECSS--------CCC-CSSCEEEECGGGT----TSSCCCCTTE-----EEEEEETTTTSSCTT--CEEEEEE
T ss_pred CCCCCcceeCCc--------ccc-cCCEEEEEccccc----CCCCCCcccC-----CEEEEechhccCCCc--cEEEEEc
Confidence 999999998651 233 4999999999987 4444444432 277889999998777 7888876
Q ss_pred CCCCcccchhHHHHHHh--------------hhhhccCcchHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhc
Q 014603 271 DPNGILQDSGIVDSIKS--------------FLNISSDPATFIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
+++.+++.. .....++++....+++.++++...+. .++.+.++.+++++++++.|++
T Consensus 208 --------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~ 279 (361)
T 3m5u_A 208 --------KDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL 279 (361)
T ss_dssp --------HHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------HHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 345444432 11123578888888888888765445 6899999999999999999999
Q ss_pred CCCC-CCCCCCC--CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHH
Q 014603 336 IPCI-TCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGR 410 (422)
Q Consensus 336 ~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~ 410 (422)
++++ .....+. ....+.+.++... + -+.++.. .++++||.+.+|... .+.+|+|+. ++++|++++++.
T Consensus 280 ~~g~~~~~~~~~~rs~~ivsf~~~~~~--~--~~~~~~~-~L~~~gI~~~~g~~~--~g~iRiS~~~~~t~edId~l~~a 352 (361)
T 3m5u_A 280 SNGFYKGHADKKDRSLMNVSFNIAKNK--D--LEPLFVK-EAEEAGMIGLKGHRI--LGGIRASIYNALNLDQVKTLCEF 352 (361)
T ss_dssp STTSEEESSCGGGBCSSEEEEEESSCT--T--HHHHHHH-HHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeeccCCHHHcCCeEEEEECCCch--h--hhHHHHH-HHHHCCCEEecCCCc--cCeEEEEccCCCCHHHHHHHHHH
Confidence 9766 3222221 2234555565300 0 1234554 457779999888653 256999998 689999999999
Q ss_pred HHHHHHHh
Q 014603 411 MKAFYDRH 418 (422)
Q Consensus 411 l~~~~~~~ 418 (422)
|+++.++.
T Consensus 353 l~~~~~~~ 360 (361)
T 3m5u_A 353 MKEFQGKY 360 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988763
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-23 Score=206.41 Aligned_cols=314 Identities=12% Similarity=0.030 Sum_probs=206.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH-HhhCCCeEEEeec
Q 014603 85 STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR-ATHSHLEVRHFDL 163 (422)
Q Consensus 85 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~~~~ 163 (422)
+...+.++++.+|++++ .+ ..+++++|+++++.+++.+++++||+|+++.++|.++... +...|++++.++.
T Consensus 171 ~~~~i~e~e~~lA~~~g------ae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~ 243 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYN------AD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQT 243 (730)
T ss_dssp TBTHHHHHHHHHHHHTT------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECE
T ss_pred ChHHHHHHHHHHHHHHC------CC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeC
Confidence 33457899999999983 33 3577888889999999999999999999999999988777 7888999888776
Q ss_pred cCCCC----cccCHHHH-----HHhhcCC------c----eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccc
Q 014603 164 LPAKG----WEVDLDAV-----EALADEN------T----VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224 (422)
Q Consensus 164 ~~~~~----~~~d~~~l-----~~~~~~~------~----~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~ 224 (422)
... . +.+|++.| ++.++++ + +++++++| |++|.+. ++++|+++|+++|+++|+|++
T Consensus 244 ~~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~---dl~~I~~la~~~g~~livDeA 318 (730)
T 1c4k_A 244 NRN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIY---NAHEVVKRIGHLCDYIEFDSA 318 (730)
T ss_dssp EEC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEE---CHHHHHHHHGGGBSEEEEECT
T ss_pred Ccc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeec---CHHHHHHHHHHcCCeEEEEcc
Confidence 432 2 23688888 8888665 4 78899998 5899996 578889999999999999999
Q ss_pred cccc-ccCCCC----CCCccccCC-CCCeEEEecCccccCCCCcee-EEEEeeCCCCcccchhH--HHHHHhhh--hhcc
Q 014603 225 YDHL-AFGNTP----FVPMGVFGS-IVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQDSGI--VDSIKSFL--NISS 293 (422)
Q Consensus 225 ~~~~-~~~~~~----~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~ 293 (422)
|+.. .+.+.. ......++. +++++++.|+||++ +|++. |++++++... ...+.. ..++.... ..++
T Consensus 319 h~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l-~g~~~~i~~~~~~~~~~~~~st 395 (730)
T 1c4k_A 319 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHI-KGQLRYCDHKHFNNSFNLFMST 395 (730)
T ss_dssp TCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGG-TTSTTCCCHHHHHHHHHHHSCS
T ss_pred cccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhh-cCcccccCHHHHHHHHHHhCCC
Confidence 9742 333211 111112233 34579999999985 44444 5665654210 000000 12222222 2234
Q ss_pred CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCC--------------------------
Q 014603 294 DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPE-------------------------- 346 (422)
Q Consensus 294 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~-------------------------- 346 (422)
+++....+++..+++......-.+..+++.++.+.+++.|++ ++++.+. .|.
T Consensus 396 sp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (730)
T 1c4k_A 396 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPF-VPPVVNGKKWEDGDTEDMANNIDYWRFEK 474 (730)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEES-SCSEETTEEGGGSCHHHHTTCGGGGBCCT
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEc-cccccccccccccccccccccchhhccCc
Confidence 666666666655555332223355567777888888888887 6676632 221
Q ss_pred -----------Cc-eE-----EEEecCcc-----c-ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cCh
Q 014603 347 -----------GS-MF-----VMVKLNYS-----L-LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEP 401 (422)
Q Consensus 347 -----------~g-~~-----~~~~~~~~-----~-~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~ 401 (422)
.+ ++ +.+.++.. . .....+..++...| +++||.+.... ...+|++++ +++
T Consensus 475 ~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L-~e~GI~v~~~~----~~~ir~~~s~g~t~ 549 (730)
T 1c4k_A 475 GAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL-RDHGIIPEKSD----LNSILFLMTPAETP 549 (730)
T ss_dssp TCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHH-HHTTCCCSEEC----SSEEEEECCTTCCH
T ss_pred cchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHH-HHCCcEEEECC----CCeEEEEeCCCCCH
Confidence 11 11 34444310 0 01112456666665 55699886532 467899887 788
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 014603 402 SALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 402 ~~l~~~~~~l~~~~~~~~ 419 (422)
++++.+++.|.++.+++.
T Consensus 550 e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 550 AKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999887663
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=190.39 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhhCC------CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE---ecCHHHHHHHHHHHhcCCCC
Q 014603 65 SVAVDAIVHSVRSA------RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL---TLGCTQAIEVILTVLARPGA 135 (422)
Q Consensus 65 ~~v~~a~~~~~~~~------~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~gd 135 (422)
+.|.+++.+..... ....|+.. +..++++.++++++ .+..++ ++||++|+..++.++++|||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-g~~~Le~~lA~l~g--------~e~alv~p~~~sGt~A~~~al~all~pGD 117 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYNDI-GRDSLDRVYANIFN--------TESAFVRPHFVNGTHAIGAALFGNLRPND 117 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCch-hHHHHHHHHHHHhC--------CCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence 57778887753321 12244443 57889999999983 234455 78999999999999999999
Q ss_pred EEEecC-CCccchH-----------HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc--CCceEEEEeC----CCCCcc
Q 014603 136 NILLPR-PGFPYYE-----------ARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD--ENTVALVIIN----PGNPCG 197 (422)
Q Consensus 136 ~Vl~~~-~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~----p~nptG 197 (422)
+|++++ +.|.++. ..++..|++++.++. +++.+|++.+++.++ ++++++++++ |+||+|
T Consensus 118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg 194 (427)
T 3hvy_A 118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL 194 (427)
T ss_dssp EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence 999998 9998776 334557888888876 345789999999988 7899999999 999998
Q ss_pred cccCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCC
Q 014603 198 NVYTYQHLQKIAETAKK--LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNG 274 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~ 274 (422)
.+ .++++|+++|++ +|+++++|++|+.+.+... ++ ..+. .++++|+||++++.| .+.||++++
T Consensus 195 ~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~---p~-~~ga---Div~~S~sK~lgg~g~~~GG~i~~~---- 260 (427)
T 3hvy_A 195 RI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKE---PT-DVGA---DIIAGSLIKNIGGGIATTGGYIAGK---- 260 (427)
T ss_dssp CH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC---GG-GGTC---SEEEEETTSGGGTTTCCSCEEEEEC----
T ss_pred cH---HHHHHHHHHHHHhCCCCEEEEECCccccccCCC---Cc-ccCC---eEEEECCcccccccccceEEEEEEC----
Confidence 87 789999999999 8999999999986543221 11 2222 389999999987665 456888875
Q ss_pred cccchhHHHHHHhhhhhc-----cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc-
Q 014603 275 ILQDSGIVDSIKSFLNIS-----SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS- 348 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g- 348 (422)
+++++++....... .+++......+...+.. +..+.++..+++..+.+.|+++ ++. + .|...
T Consensus 261 ----~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~-----~~~r~~~~~~~a~~la~~L~~~-g~~-V-~p~~~~ 328 (427)
T 3hvy_A 261 ----EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFM-----APHVTIEAVKGAVFCARIMELA-GFD-V-LPKYND 328 (427)
T ss_dssp ----HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHT-TCE-E-ESCTTS
T ss_pred ----HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhC-CCe-e-cCCCCC
Confidence 57888887643211 11211113333333332 4567777888899999999988 444 2 23222
Q ss_pred ----eEEEEecC
Q 014603 349 ----MFVMVKLN 356 (422)
Q Consensus 349 ----~~~~~~~~ 356 (422)
..+.+.+.
T Consensus 329 ~~~~li~~~~l~ 340 (427)
T 3hvy_A 329 KRTDIIQAIKFN 340 (427)
T ss_dssp CCSSSEEEEECS
T ss_pred CCceEEEEEeCC
Confidence 25666664
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-22 Score=188.74 Aligned_cols=241 Identities=17% Similarity=0.170 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhhC------CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE---ecCHHHHHHHHHHHhcCCCC
Q 014603 65 SVAVDAIVHSVRS------ARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL---TLGCTQAIEVILTVLARPGA 135 (422)
Q Consensus 65 ~~v~~a~~~~~~~------~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~gd 135 (422)
.+|.++|.+.... .....|+. .+..++++.+|++++ .+..++ ++||++|+..++.+++++||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~-~~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all~~GD 102 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYDD-EGRDTLERVYATVFK--------TEAALVRPQIISGTHAISTVLFGILRPDD 102 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTTC-HHHHHHHHHHHHHHT--------CSEEEEETTSCSHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCCh-hHHHHHHHHHHHHhC--------CCcEEEECCCccHHHHHHHHHHHhcCCCC
Confidence 4677777775321 11224444 356789999999983 234455 88999999999999999999
Q ss_pred EEEecC-CCccchHH----------HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeC----CCCCccccc
Q 014603 136 NILLPR-PGFPYYEA----------RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIIN----PGNPCGNVY 200 (422)
Q Consensus 136 ~Vl~~~-~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~----p~nptG~~~ 200 (422)
+|+++. +.|..+.. .++..|++++.++.++ ++.+|++.+++.++++++++++++ |+||+|.+
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v- 179 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTI- 179 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCH-
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCcc-
Confidence 999998 99988764 3456788888888753 456899999999998999999999 99999988
Q ss_pred CHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCccc
Q 014603 201 TYQHLQKIAETAKK--LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQ 277 (422)
Q Consensus 201 ~~~~l~~i~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 277 (422)
.++++|+++|++ +|+++|+|++|+.+.+... + ...+. .++++|+||.++++| .+.||++++
T Consensus 180 --~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~---p-~~~g~---Div~~S~sK~lgg~~~~~GG~v~~~------- 243 (409)
T 3jzl_A 180 --EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQE---P-PEVGA---DIIAGSLIKNPGGGLAKTGGYIAGK------- 243 (409)
T ss_dssp --HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCC---S-GGGTC---SEEEEETTSGGGTTTCSSCEEEEEC-------
T ss_pred --ccHHHHHHHHHhhCCCCEEEEeCCcccccccCC---c-cccCC---eEEEECccccCCccCCceEEEEEeC-------
Confidence 789999999999 9999999999986543211 1 12233 389999999987766 446888885
Q ss_pred chhHHHHHHhhhhh-----ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014603 278 DSGIVDSIKSFLNI-----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340 (422)
Q Consensus 278 ~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 340 (422)
+++++++...... ...+....+.++...+.. +..+.++..+++..+.+.|+++ ++.
T Consensus 244 -~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~-g~~ 304 (409)
T 3jzl_A 244 -EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFL-----APHVTAQAIKGARFTAAMLAEF-GVE 304 (409)
T ss_dssp -HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred -HHHHHHHHHHhccccccccccccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 5788888764321 112222113333333432 4566777888899999999988 444
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-22 Score=188.33 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhhCC------CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE---ecCHHHHHHHHHHHhcCCCC
Q 014603 65 SVAVDAIVHSVRSA------RFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYL---TLGCTQAIEVILTVLARPGA 135 (422)
Q Consensus 65 ~~v~~a~~~~~~~~------~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~---~~g~~~a~~~~~~~l~~~gd 135 (422)
+.|.+++.+..... ....|+. .+..++++.+|++++ . +..++ ++||++|+..++.+++++||
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~-~~~~~Le~~lA~l~g------~--e~alv~p~~~sGt~Ai~~al~all~pGD 116 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGD-IGRDSLDAVYARVFN------T--ESALVRPHFVNGTHALGAALFGNLRPGN 116 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTC-HHHHHHHHHHHHHHT------C--SEEEEETTCCSHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCH-HHHHHHHHHHHHHhC------C--cceEEeCCCccHHHHHHHHHHHHhCCCC
Confidence 56777777643211 1123443 356889999999983 2 33344 88999999999999999999
Q ss_pred EEEecC-CCccchHH-----------HHhhCCCeEEEeeccCCCCcccCHHHHHHhhc--CCceEEEEeC----CCCCcc
Q 014603 136 NILLPR-PGFPYYEA-----------RATHSHLEVRHFDLLPAKGWEVDLDAVEALAD--ENTVALVIIN----PGNPCG 197 (422)
Q Consensus 136 ~Vl~~~-~~~~~~~~-----------~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~~i~i~~----p~nptG 197 (422)
+|++++ +.|.++.. .++..|++++.++.+. ++.+|++.+++.++ ++++++++++ |+||+|
T Consensus 117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~--~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg 194 (427)
T 3i16_A 117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKE--DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRAL 194 (427)
T ss_dssp EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCT--TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCC
T ss_pred EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCcc--CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcc
Confidence 999999 99987763 3456688888888753 34689999999998 7899999999 999999
Q ss_pred cccCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCC
Q 014603 198 NVYTYQHLQKIAETAKK--LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNG 274 (422)
Q Consensus 198 ~~~~~~~l~~i~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~ 274 (422)
.+ .++++|+++|++ +|+++++|++|+.+.+... +. ..+. .++++|+||.++++| .+.||++++
T Consensus 195 ~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~---p~-~~ga---Div~~S~sK~lgg~g~~~gG~i~~~---- 260 (427)
T 3i16_A 195 LI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKE---PT-DVGA---DLIAGSLIKNIGGGIAPTGGYLAGT---- 260 (427)
T ss_dssp CH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSC---GG-GGTC---SEEEEETTSGGGTTTCCSCEEEEEC----
T ss_pred cH---HHHHHHHHHHHHhCCCCEEEEECCCccccccCC---cc-ccCC---eEEEecCcccCCCCCCceEEEEEEC----
Confidence 88 789999999999 9999999999987543221 11 2232 389999999987766 667999885
Q ss_pred cccchhHHHHHHhhhhh---ccCcch-HH-HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc-
Q 014603 275 ILQDSGIVDSIKSFLNI---SSDPAT-FI-QGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS- 348 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~---~~~~~~-~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g- 348 (422)
+++++++...... .....+ +. ...+...+. .+..+.++..+++..+.+.|+++ ++. + .|...
T Consensus 261 ----~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~-----~~~~r~~~~~~~a~~la~~L~~~-g~~-V-~p~~~~ 328 (427)
T 3i16_A 261 ----KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLF-----LAPHISMEALKGAILCSRIMELA-GFE-V-MPKYDE 328 (427)
T ss_dssp ----HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHT-TCE-E-ESCTTS
T ss_pred ----HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhC-CCe-e-cCCCCC
Confidence 5788888764321 111111 22 233333332 25667788888999999999988 444 2 33322
Q ss_pred ----eEEEEecC
Q 014603 349 ----MFVMVKLN 356 (422)
Q Consensus 349 ----~~~~~~~~ 356 (422)
..+.+.+.
T Consensus 329 ~~~~~i~~i~l~ 340 (427)
T 3i16_A 329 KRSDIIQSIKFN 340 (427)
T ss_dssp CCSSSCEEEECS
T ss_pred CCccEEEEEEEC
Confidence 25556664
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-22 Score=188.12 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=211.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|+|.+|+.+++...... ..+.....++.+.+++.+. ..+.++|+++|++|
T Consensus 85 dG~~ylD~~~g~~~~~lG-H~hp~v~~Av~~q~~~~~~~-~~~~~~~~~lae~l~~~~p-------~~~~v~f~~SGsEA 155 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYG-HSAPEIRDAVIEAMQGGINL-TGHNLLEGRLARLICERFP-------QIEQLRFTNSGTEA 155 (454)
T ss_dssp TCCEEEESSGGGGTTTTC-SCCHHHHHHHHHHHHTCSCC-CSEESSHHHHHHHHHHHST-------TCSEEEEESSHHHH
T ss_pred CCCEEEEccccHHhhccc-CCCHHHHHHHHHHHhcCCCc-cCCcHHHHHHHHHHHHhCC-------CCCEEEEeCchHHH
Confidence 588899998876543233 46799999999999874322 2223344566677766652 46799999999999
Q ss_pred HHHHHHHhcC--CCCEEEecCCCccchHHHHhhC----C--CeEEEeeccCCCCcccCHHHHHHhhcC--CceEEEEeCC
Q 014603 123 IEVILTVLAR--PGANILLPRPGFPYYEARATHS----H--LEVRHFDLLPAKGWEVDLDAVEALADE--NTVALVIINP 192 (422)
Q Consensus 123 ~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~~i~i~~p 192 (422)
++.+++.... ..++|+..+.+|++....+... . .....+|. -|++.+++.+.+ ...+.+|..|
T Consensus 156 ~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAavIvEP 228 (454)
T 4ao9_A 156 NLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVVLVEP 228 (454)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEEEECS
T ss_pred HHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEEEecc
Confidence 9999886532 3378999999998754322111 1 11222221 267888877753 2355667777
Q ss_pred -CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 193 -GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 193 -~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
+...|.+ ++++.+++|.++|++||+++|+||++.+ +.|... ....++..++++ +++|.+ ..|+++|++.++
T Consensus 229 v~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~-a~e~~gv~PDi~---t~gK~l-ggG~Piga~~~~ 301 (454)
T 4ao9_A 229 MQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHG-LANKLGIRSDLT---TLGKYI-GGGMSFGAFGGR 301 (454)
T ss_dssp EESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTC-HHHHHTCCCSEE---EEEGGG-GTTSSCEEEEEC
T ss_pred ccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcccc-chhccCCCCcEE---Eecccc-CCCCcceeeeeH
Confidence 5556754 5678899999999999999999999984 444332 123334334444 446995 568999999986
Q ss_pred CCCCcccchhHHHHHHhh-----hhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSF-----LNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKK 344 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 344 (422)
+++++.+... ...+.+.++++++++.+.|+... ++.+++..+.-...++.|.+.+++.+-+. . .
T Consensus 302 --------~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~-~-v 371 (454)
T 4ao9_A 302 --------ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAM-Q-F 371 (454)
T ss_dssp --------HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSC-E-E
T ss_pred --------HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCE-E-E
Confidence 4677766442 12345678899999999888644 33334333333334444444334443221 1 1
Q ss_pred CCCceEEEEecCcccc---cC--CCCH---HHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 345 PEGSMFVMVKLNYSLL---EG--INSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 345 ~~~g~~~~~~~~~~~~---~~--~~~~---~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
..-|.++.+.+..... .. ..+. ..+...+ .++||++.|.. .+.+++.+++++|++++++|++++.
T Consensus 372 rg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l-l~~Gv~~~p~~------~~~~s~~~T~~dId~~l~al~~~l~ 444 (454)
T 4ao9_A 372 TGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHL-LNEDIYSSPRG------FVVLSLPLTDADIDRYVAAIGSFIG 444 (454)
T ss_dssp EEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHH-HHTTEECCTTC------EEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred eeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHH-HHCCEEEcCCC------CEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 2224455555532110 00 0011 2233444 45699998743 3455666899999999999999998
Q ss_pred Hhc
Q 014603 417 RHA 419 (422)
Q Consensus 417 ~~~ 419 (422)
++.
T Consensus 445 ~~~ 447 (454)
T 4ao9_A 445 GHG 447 (454)
T ss_dssp HSG
T ss_pred hcc
Confidence 864
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=188.65 Aligned_cols=263 Identities=17% Similarity=0.167 Sum_probs=175.6
Q ss_pred HHHHHHHHHHhhCCC----C--CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 65 SVAVDAIVHSVRSAR----F--NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~----~--~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
+.+.+++.+...... . ..|+. .+..++++.+++++ |......+++++ ||++|+..++.+++++||+|+
T Consensus 38 ~~vl~A~~~~~~~~~~~~~~~g~~y~~-~~~~~l~~~la~~~----g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl 111 (431)
T 3ht4_A 38 FRVLESFGKHKISDSHFIPTTGYGYDD-IGRDTLEKVYADVF----GAEAGLVRPQII-SGTHAISTALFGILRPGDELL 111 (431)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCCSC-HHHHHHHHHHHHHT----TCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEE
T ss_pred HHHHHHHHHhchhhhhcCCCCCCCCCh-hhHHHHHHHHHHHh----CCCcccccceee-CHHHHHHHHHHHhCCCCCEEE
Confidence 577777776532211 1 12222 22345555555555 322112222344 779999999999999999999
Q ss_pred ecC-CCccchHHHH----------hhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEe-CCCCCcccccCHHHHH
Q 014603 139 LPR-PGFPYYEARA----------THSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII-NPGNPCGNVYTYQHLQ 206 (422)
Q Consensus 139 ~~~-~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~-~p~nptG~~~~~~~l~ 206 (422)
++. +.|..+...+ +..|.+++.++.++ ++.+|++.|++.+++++++++++ +|+||+|...+.++++
T Consensus 112 ~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~--~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~ 189 (431)
T 3ht4_A 112 YITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTE--GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIK 189 (431)
T ss_dssp ECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCT--TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHH
T ss_pred EeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCC--CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHH
Confidence 998 9998877554 34688888888754 36789999999999899999999 5899999999999999
Q ss_pred HHHHHHHH--cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHH
Q 014603 207 KIAETAKK--LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 207 ~i~~~~~~--~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
+|+++|++ +|+++|+|++|+.+.+... + ..++.+ ++++|+||.+++ .++..||++++ +++++
T Consensus 190 ~i~~la~~~~~~~~livDea~~~~~~~~~---~-~~~g~D---i~~~S~sK~lgg~~~~~GG~v~~~--------~~li~ 254 (431)
T 3ht4_A 190 EMIAFVKEIKPDVVVFVDNCYGEFIEEQE---P-CHVGAD---LMAGSLIKNPGGGIVKTGGYIVGK--------EQYVE 254 (431)
T ss_dssp HHHHHHHHHCTTCEEEEECTTCTTSSSCC---G-GGTTCS---EEEEETTSGGGTTTCSSCEEEEEC--------HHHHH
T ss_pred HHHHHHHhhCCCCEEEEeCCChhhccCCC---c-cccCCe---EEEcCccccCCCCCCCceEEEEec--------HHHHH
Confidence 99999999 9999999999998765332 1 122332 899999999654 22444999985 57777
Q ss_pred HHHhhhhh-----ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC---CCCCCceEEEEec
Q 014603 284 SIKSFLNI-----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP---KKPEGSMFVMVKL 355 (422)
Q Consensus 284 ~~~~~~~~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~g~~~~~~~ 355 (422)
++...... ...++.....++...+.. +..+.++..++.+.+.+.|+++ ++.+. ..+..+....+.+
T Consensus 255 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l 328 (431)
T 3ht4_A 255 ACAYRLTSPGIGAEAGASLYSLQEMYQGFFL-----APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQF 328 (431)
T ss_dssp HHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEEC
T ss_pred HHHHHhccCCcccccCccHHHHHHHHhHhhh-----HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEe
Confidence 77664321 112211213333333332 4556677778888888888876 44421 1122233555666
Q ss_pred C
Q 014603 356 N 356 (422)
Q Consensus 356 ~ 356 (422)
+
T Consensus 329 ~ 329 (431)
T 3ht4_A 329 D 329 (431)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=198.79 Aligned_cols=307 Identities=10% Similarity=0.021 Sum_probs=199.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK 167 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (422)
.+.++++.++++++ .+ +.+++++|+++++.+++.+++++||+|+++.++|.++...+...|++++.++...+
T Consensus 206 ~v~~~ee~la~l~G------~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~- 277 (755)
T 2vyc_A 206 AFGESEKYAARVFG------AD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN- 277 (755)
T ss_dssp HHHHHHHHHHHHHT------CS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-
T ss_pred HHHHHHHHHHHHhC------CC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-
Confidence 35788888888883 23 45788888899999999999999999999999999988888889999988876532
Q ss_pred Ccc----c-----CHHHHHHhhcC--Cce--------EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccc
Q 014603 168 GWE----V-----DLDAVEALADE--NTV--------ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHL 228 (422)
Q Consensus 168 ~~~----~-----d~~~l~~~~~~--~~~--------~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~ 228 (422)
.++ + |++.|++++++ +++ ++++++| ||+|.+. ++++|+++|+++|+++++|++|+..
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~---dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCY---NAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEE---CHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceec---CHHHHHHHHHHcCCEEEEECcCchh
Confidence 222 4 89999998853 333 8889998 7999996 4788899999999999999999743
Q ss_pred -ccCCC--CCCCccc--cC-CCCCeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHhhh--hhccCcchHH
Q 014603 229 -AFGNT--PFVPMGV--FG-SIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKSFL--NISSDPATFI 299 (422)
Q Consensus 229 -~~~~~--~~~~~~~--~~-~~~~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 299 (422)
.+.+. +..++.. .+ .+++++++.|+||++ +|++ .|++++++.....+ ..++.... ..+++++...
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~----~~~~~~~~~~~~s~sp~~~~ 427 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAIN----FSRFNQAYMMHATTSPLYAI 427 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCC----HHHHHHHHHHTSCSSCCHHH
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccC----HHHHHHHHHHhCCCCHHHHH
Confidence 23221 1122211 12 234578999999985 4544 56777765310110 12222221 2234667666
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC---------CCCCCCCC------------------------
Q 014603 300 QGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC---------ITCPKKPE------------------------ 346 (422)
Q Consensus 300 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---------~~~~~~~~------------------------ 346 (422)
.+++..+++.......+++.+++.++.+.+++.|+++++ ++++ .|.
T Consensus 428 iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (755)
T 2vyc_A 428 CASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPW-NKEVVTDPQTGKTYDFADAPTKLLTTV 506 (755)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEES-SCSEEECTTTCCEEEGGGSCHHHHHHC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeecc-Cchhccccccccccccccccchhccch
Confidence 666666665322222344555556666666666655433 3211 111
Q ss_pred -------------------Cc------eEEEEecCcccccC-----CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEE
Q 014603 347 -------------------GS------MFVMVKLNYSLLEG-----INSDMEFALKLAKEESVIVLPGITVGLKDWLRIT 396 (422)
Q Consensus 347 -------------------~g------~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis 396 (422)
.+ .-+.+.++.....| ..++.++...| +++||.+... ..+.+|++
T Consensus 507 ~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L-~~~gI~~e~~----~~~~v~~~ 581 (755)
T 2vyc_A 507 QDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL-GRHGIVPTRT----TDFQIMFL 581 (755)
T ss_dssp GGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHH-HTTTCCCSEE----CSSEEEEE
T ss_pred hhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHH-HHCCCEEeec----CCCeEEEE
Confidence 11 12334443211111 12445665554 6689887543 25789999
Q ss_pred ec--cChHHHHHHHHHHHHHHHHh
Q 014603 397 FA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 397 ~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
++ .++++++.+++.|.++.+.+
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhh
Confidence 97 68899999999999887665
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=185.09 Aligned_cols=351 Identities=13% Similarity=0.096 Sum_probs=217.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCC-CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTV-GILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~-g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
.+|+.+|||..|......+ ..+|++.+|+.+++.+.. .|.... ...+....+|+.|.+.. +.+.+.|+|+++|+
T Consensus 64 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~l~--~~~~~~~~~~~~~~~lAe~L~~~~--p~~~~~v~f~~sGs 138 (473)
T 4e3q_A 64 VNGRRYLDANSGLWNMVAG-FDHKGLIDAAKAQYERFP--GYHAFFGRMSDQTVMLSEKLVEVS--PFDSGRVFYTNSGS 138 (473)
T ss_dssp TTCCEEEETTTTTTTCTTC-SCCHHHHHHHHHHHHHCC--CCCCCTTEEEHHHHHHHHHHHHHS--SCSSCEEEEESSHH
T ss_pred CCCCEEEEcccCHHHhhcc-CCCHHHHHHHHHHHHhcc--cccccccccCHHHHHHHHHHHhhC--CCCccEEEEeCchH
Confidence 3689999999887554333 357899999999987632 222111 11233334555554432 33456899999999
Q ss_pred HHHHHHHHHhc-------CCC-CEEEecCCCccchHHHHhh-CCC-----------eEEEeeccCC---CCcccC-----
Q 014603 121 QAIEVILTVLA-------RPG-ANILLPRPGFPYYEARATH-SHL-----------EVRHFDLLPA---KGWEVD----- 172 (422)
Q Consensus 121 ~a~~~~~~~l~-------~~g-d~Vl~~~~~~~~~~~~~~~-~g~-----------~~~~~~~~~~---~~~~~d----- 172 (422)
+|++.+++... +++ .+|+....+||+....+.. .+. ....++.... ......
T Consensus 139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 218 (473)
T 4e3q_A 139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV 218 (473)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence 99999988642 133 5789999999886443322 111 1222221100 000011
Q ss_pred ---HHHHHHhhc---CCceEEEEeCC-CCCcccc-cCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC
Q 014603 173 ---LDAVEALAD---ENTVALVIINP-GNPCGNV-YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI 244 (422)
Q Consensus 173 ---~~~l~~~~~---~~~~~i~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
.+++++.+. ++..+.++..| +...|.+ ++++.+++|.++|++||+++|.||++.++.++|... ....++..
T Consensus 219 ~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv~ 297 (473)
T 4e3q_A 219 ARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTW-GCVTYDFT 297 (473)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSC-HHHHTTCC
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchh-HHHhcCCC
Confidence 123444332 34567778888 5556764 667889999999999999999999999988877643 23334444
Q ss_pred CCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhchHHHHH
Q 014603 245 VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTEEEFFS 316 (422)
Q Consensus 245 ~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 316 (422)
+++++ ++|.++..++++|.++++ +++.+.+... ...+.+.++++++++.+.|+...++.
T Consensus 298 PDi~t---~~K~l~gG~~Pl~av~~~--------~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~-- 364 (473)
T 4e3q_A 298 PDAII---SSKNLTAGFFPMGAVILG--------PELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEG-- 364 (473)
T ss_dssp CSEEE---ECGGGGTTSSCCEEEEEC--------HHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSS--
T ss_pred CChHH---hcccccCCCCCccccccc--------HHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcccc--
Confidence 44444 469965444999999986 5777777543 12345778999999999988644322
Q ss_pred HHHHHHHHHHHHHHHHhhc---CCCCCCCCCCCCceEEEEecCcccc-----cCCCC-HHHHHHHHHHhcCeEEecCCCC
Q 014603 317 KITDILRETADICCDRLKE---IPCITCPKKPEGSMFVMVKLNYSLL-----EGINS-DMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~---~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
..+++++.-+++.+.|++ .|.+. - ...-|.++.+.+..... ..... ...+.. .+.++|+++.|.
T Consensus 365 -l~~~~~~~g~~l~~~L~~l~~~~~v~-~-vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~-~~~~~Gll~~~~--- 437 (473)
T 4e3q_A 365 -LAENVRRLAPRFEERLKHIAERPNIG-E-YRGIGFMWALEAVKDKASKTPFDGNLSVSERIAN-TCTDLGLICRPL--- 437 (473)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSTTEE-E-EEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHH-HHHHTTEECEEE---
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCee-E-EeecceEEEEEEecCccccccccccHHHHHHHHH-HHHHCCcEEEec---
Confidence 233344444555555544 34432 1 12235666666532110 00001 233444 456679999874
Q ss_pred CCCCeEEEEec--cChHHHHHHHHHHHHHHHHhcc
Q 014603 388 GLKDWLRITFA--VEPSALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 388 ~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~ 420 (422)
.+.+|+++. .+++++++++++|++++++..+
T Consensus 438 --g~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 438 --GQSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 368999876 7899999999999999988654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-21 Score=182.46 Aligned_cols=351 Identities=17% Similarity=0.163 Sum_probs=214.2
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC--CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN--CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
+|+.+|||..|......+ ..+|++.+|+.+++...... .+.+.....++.+.+++.. + ....+.++|+++|+
T Consensus 62 dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~----p-~~~~~~v~f~~sGs 135 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVG-ASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLT----P-GDHAKRTVLFNSGA 135 (456)
T ss_dssp TSCEEEESSHHHHTCTTC-TTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHS----S-CSSCEEEEEESSHH
T ss_pred CCCEEEEccccHHHHhcC-CCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhC----C-CCCCcEEEEeCChH
Confidence 488899998875432222 45799999999998763221 1222222223444444443 2 11346799999999
Q ss_pred HHHHHHHHHhc--CCCCEEEecCCCccchHHHHhh-CC-------------CeEEEeeccCC----CCcccCHHH-----
Q 014603 121 QAIEVILTVLA--RPGANILLPRPGFPYYEARATH-SH-------------LEVRHFDLLPA----KGWEVDLDA----- 175 (422)
Q Consensus 121 ~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~-~g-------------~~~~~~~~~~~----~~~~~d~~~----- 175 (422)
+|++.+++... ....+|+....+||+....+.. .+ ..+..+|.... .....+.+.
T Consensus 136 EA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 215 (456)
T 4atq_A 136 EAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAI 215 (456)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHH
Confidence 99999987642 2347899999999987543322 11 12333432110 000112222
Q ss_pred --HHHhhcCCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 176 --VEALADENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 176 --l~~~~~~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
+++.+..+..+.+|..| +...|. .++++.+++|.++|++||+++|+||++.++.++|... ....++..+++++
T Consensus 216 ~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~-a~e~~gv~PDivt-- 292 (456)
T 4atq_A 216 TMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWF-AVDHEGVVPDIIT-- 292 (456)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTCCCSEEE--
T ss_pred HHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccc-cccccCCCCchhh--
Confidence 22333345677777888 455665 4677889999999999999999999999988887643 3444444444444
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICC 330 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 330 (422)
++|.+ ..|+++|.++++ +++++.+.... ..+++.++++++++.+.|+...++.+ .++.++.-+++.
T Consensus 293 -~gK~l-ggg~P~~av~~~--------~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l---~~~~~~~g~~l~ 359 (456)
T 4atq_A 293 -MAKGI-AGGLPLSAITGR--------ADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDL---NGRARHIEELAL 359 (456)
T ss_dssp -ECGGG-GTTSSCEEEEEE--------HHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHH
T ss_pred -hhhcc-cCcCCceeeEec--------HHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccH---HHHHHHHHHHHH
Confidence 46994 678999999986 46666665443 34568899999999999987543322 223333333333
Q ss_pred HHh----hcCCCC--CCCC-CCCCceEEEEecCcccccCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--c
Q 014603 331 DRL----KEIPCI--TCPK-KPEGSMFVMVKLNYSLLEGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--V 399 (422)
Q Consensus 331 ~~L----~~~~~~--~~~~-~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~ 399 (422)
+.| ++++.. .++. ...-|.++.+.+........ .....+... +.++|+++.++... .+.+|+.+. .
T Consensus 360 ~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~-~~~~Gvl~~~~g~~--~~~irl~PpL~i 436 (456)
T 4atq_A 360 GKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAA-CLKEGVIILTCGTY--GNVIRLLPPLVI 436 (456)
T ss_dssp HHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHH-HHHTTEECEEECTT--SCEEEECCCTTC
T ss_pred HHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHH-HHHCCCEEEecCCC--CCEEEEECCCCC
Confidence 333 333211 1010 11236677777643211100 012334444 45679998765322 478999987 6
Q ss_pred ChHHHHHHHHHHHHHHHHh
Q 014603 400 EPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 400 ~~~~l~~~~~~l~~~~~~~ 418 (422)
+++++++++++|+++++.+
T Consensus 437 t~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 437 SDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999754
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-19 Score=177.58 Aligned_cols=307 Identities=13% Similarity=0.040 Sum_probs=190.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeec
Q 014603 84 SSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163 (422)
Q Consensus 84 ~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (422)
.+...+.++++.+|++++. ...+++++|++.|+.+++.+++++||+|+++.++|.++...+...|+.++.++.
T Consensus 192 ~~~g~i~eaE~~lA~~fGa-------~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~ 264 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFNA-------DRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRP 264 (715)
T ss_dssp TTBTHHHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECC
T ss_pred CCcHHHHHHHHHHHHHhCC-------CCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEec
Confidence 3445578999999999942 234566777789999999999999999999999999999999999999988876
Q ss_pred cCCCCccc---------CHHHHHHhhcC--Cce---EEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 014603 164 LPAKGWEV---------DLDAVEALADE--NTV---ALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA 229 (422)
Q Consensus 164 ~~~~~~~~---------d~~~l~~~~~~--~~~---~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~ 229 (422)
..+ .+++ |++.|++++++ +++ ++++++| |++|.+++ +++|.++|+.++ +++||+|+...
T Consensus 265 ~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~ 337 (715)
T 3n75_A 265 TRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYT 337 (715)
T ss_dssp CBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTG
T ss_pred ccc-ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEcccccccc
Confidence 532 3443 89999998863 334 7899999 99999975 556666676653 78999998543
Q ss_pred -cCCCCCCCccccCC---CCC-eEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh--hccCcchHHHHH
Q 014603 230 -FGNTPFVPMGVFGS---IVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN--ISSDPATFIQGA 302 (422)
Q Consensus 230 -~~~~~~~~~~~~~~---~~~-~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a 302 (422)
+.+... ....+.. .+. ++++.|+||++++. ...|++++++.. ...++..... .+++++.+..++
T Consensus 338 ~f~~~~~-~~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i-------~~~~~~~~~~~~~STSpsy~~~As 408 (715)
T 3n75_A 338 NFSPIYE-GKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDV-------NEETFNEAYMMHTTTSPHYGIVAS 408 (715)
T ss_dssp GGSGGGT-TSSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEESCC-------CHHHHHHHHHHTSCSSCCHHHHHH
T ss_pred ccCCccc-cccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCchh-------hHHHHHHHHHhhcCCCchHHHHHH
Confidence 332111 1112211 122 35689999996442 024888886531 1222333322 245677777777
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCC------------C----------CCc------
Q 014603 303 VPQILEKTEEEFFSKITDILRETADICCDRLKEIPC------ITCPKK------------P----------EGS------ 348 (422)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~------------~----------~~g------ 348 (422)
+..+++......-.++++++.++.+.+++.|+++++ +.++.. | ..+
T Consensus 409 ldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp 488 (715)
T 3n75_A 409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP 488 (715)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCC
Confidence 776665432212344556666666777776665432 121100 0 001
Q ss_pred eEEEEecCcccccC-----CCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe--ccChHHHHHHHHHHHHHHHHh
Q 014603 349 MFVMVKLNYSLLEG-----INSDMEFALKLAKEESVIVLPGITVGLKDWLRITF--AVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 349 ~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~--~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.=+.+.++.-...| .....++... |+++||.+.-.. ...+-+-+ +.++++++.+++.|.++-+.+
T Consensus 489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~-L~~~~I~~E~~d----~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 489 IKVTLLTPGMEKDGTMSDFGIPASIVAKY-LDEHGIVVEKTG----PYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp TEEEEECSCBCTTSCBCSSCCCHHHHHHH-HHHTTCCCSEEE----TTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCccccCCCcHHHHHHH-HHHCCCEEEecC----CCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11222332210001 1244555554 477798875543 23343333 468889999998888765543
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=189.97 Aligned_cols=348 Identities=12% Similarity=0.076 Sum_probs=208.8
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEecCHHHHHH
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLS-PDDVYLTLGCTQAIE 124 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~~g~~~a~~ 124 (422)
.++|+..|.-....++..+|++.+|+.+++..-....+.. ...+....+++.|.+..+ .. .+.++|+++|++|++
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~--~~~~~~~~Lae~L~~~~p--~~~l~~vff~~SGSeA~E 456 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPE--NVYEPALKCAELLLDGVG--KGWASRVYFSDNGSTAIE 456 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTT--EECHHHHHHHHHHHHTTT--TTTCCEEEEESSHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccc--cCCHHHHHHHHHHHHhCC--CCCCCEEEECCChhHHHH
Confidence 6788887743322222227999999999987622111111 112333345555544322 12 468999999999999
Q ss_pred HHHHHhc-----CC------------CCEEEecCCCccchHHHHhhC-CC---------------eE-------------
Q 014603 125 VILTVLA-----RP------------GANILLPRPGFPYYEARATHS-HL---------------EV------------- 158 (422)
Q Consensus 125 ~~~~~l~-----~~------------gd~Vl~~~~~~~~~~~~~~~~-g~---------------~~------------- 158 (422)
.+++... .. ..+|+....+||+....+... |. .+
T Consensus 457 ~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 536 (831)
T 4a0g_A 457 IALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGS 536 (831)
T ss_dssp HHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTE
T ss_pred HHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCc
Confidence 9987652 12 237888999998764433322 21 00
Q ss_pred EEeeccCC------CCccc-C------------------HHHHHHhhc-------CCceEEEEeCC--CCCcccc-cCHH
Q 014603 159 RHFDLLPA------KGWEV-D------------------LDAVEALAD-------ENTVALVIINP--GNPCGNV-YTYQ 203 (422)
Q Consensus 159 ~~~~~~~~------~~~~~-d------------------~~~l~~~~~-------~~~~~i~i~~p--~nptG~~-~~~~ 203 (422)
..++.... +.... + .+.|++.+. .+..+.++..| ++..|.. +|++
T Consensus 537 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~ 616 (831)
T 4a0g_A 537 WNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPL 616 (831)
T ss_dssp EEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHH
T ss_pred eEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHH
Confidence 01111100 00000 1 245666664 24566677777 5777764 6888
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIV 282 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~ 282 (422)
.+++|.++|++||+++|+||++.++.++|..+ ....++..++++ +++|.++. | +++|+++++ ++++
T Consensus 617 ~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~f-a~e~~gv~PDii---tlsK~L~g-G~~Plgav~~~--------~~i~ 683 (831)
T 4a0g_A 617 FQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGCKPDIA---CFAKLLTG-GMVPLAVTLAT--------DAVF 683 (831)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTTTTTTSBSS-THHHHSSCCSEE---EECGGGGT-TSSCCEEEEEC--------HHHH
T ss_pred HHHHHHHHHHHcCCeEEEEcCccccccCCCch-hhHhcCCCCcEE---EEeccccc-CccCcEEEEEC--------HHHH
Confidence 99999999999999999999999988887654 333444434433 57899654 6 899999996 4677
Q ss_pred HHHHhh-------hhhccCcchHHHHHHHHHHhhchHH-HHHHHH---HHHHH-HHHHHHHHhhcCCCCCCCCCCCCceE
Q 014603 283 DSIKSF-------LNISSDPATFIQGAVPQILEKTEEE-FFSKIT---DILRE-TADICCDRLKEIPCITCPKKPEGSMF 350 (422)
Q Consensus 283 ~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~---~~~~~-~~~~l~~~L~~~~~~~~~~~~~~g~~ 350 (422)
+.+... ...+.+.++++++++.++|+...++ ..++.. +++++ ..+.+.+.+++.|.+. . ....|.+
T Consensus 684 ~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~-~-vrg~Gl~ 761 (831)
T 4a0g_A 684 DSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQ-R-VVVIGTL 761 (831)
T ss_dssp HTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEE-E-EEEETTE
T ss_pred HHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCce-e-EeecccE
Confidence 766542 2244577889999999988753211 111111 11111 1223445566666554 2 1233667
Q ss_pred EEEecCcccc-cCC--CCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 351 VMVKLNYSLL-EGI--NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 351 ~~~~~~~~~~-~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.+.+..... ... ....++...+ .++||++.|+ .+.+|+++. +++++|++++++|.++++++
T Consensus 762 ~~iel~~~~~~~~~~~~~a~~~~~~l-~e~Gv~v~p~-----g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 762 FALELKADASNSGYASLYAKSLLIML-REDGIFTRPL-----GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp EEEEEC---------CHHHHHHHHHH-HHTTEECCCB-----TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEecCccccccchHHHHHHHHHH-HHCCcEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7777643100 000 0133455554 5679999885 378999965 79999999999999998765
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-18 Score=155.92 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=195.5
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCC----CCEEEecCCCccchHHHHhhCCCeEEEeeccC-CCC
Q 014603 94 RAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARP----GANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKG 168 (422)
Q Consensus 94 ~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~----gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~ 168 (422)
..+.+|+... |++ .....++++|+|.++.+++.+.+++ +|+|+++..+|.+...+....|+.+++++... .+.
T Consensus 120 ~l~ld~L~~~-G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 120 SLVLDIIKLA-GVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHHHHT-TCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTE
T ss_pred HHHHHHHHHc-CCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccc
Confidence 3444666553 544 2346889999997777777666553 49999999999999999999999998886522 235
Q ss_pred cccCHHHHHHhhcC---CceEEEEeCC-CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCCCccccC-
Q 014603 169 WEVDLDAVEALADE---NTVALVIINP-GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA-FGNTPFVPMGVFG- 242 (422)
Q Consensus 169 ~~~d~~~l~~~~~~---~~~~i~i~~p-~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~- 242 (422)
..+|++.+++++++ +.++++++++ .|..+.+ +++++|+++|++||+++++|+||+... +....+.....++
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~---ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~Gr 274 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVP---DRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR 274 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccc---ccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCC
Confidence 78899999998854 3455555555 4434455 689999999999999999999997632 1000011111223
Q ss_pred CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 014603 243 SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDIL 322 (422)
Q Consensus 243 ~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 322 (422)
.| +++.|.+|.+..+ +..|.+...+ +++.+++.... .++.+....+.+...+.+.....+.+..++.
T Consensus 275 AD---~vVqS~HK~llvp-IGG~ii~~~d-------~e~l~~~~~~y--PGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~ 341 (501)
T 3hl2_A 275 ID---AFVQSLDKNFMVP-VGGAIIAGFN-------DSFIQEISKMY--PGRASASPSLDVLITLLSLGSNGYKKLLKER 341 (501)
T ss_dssp CC---EEEEEHHHHHCCC-SSCEEEEESC-------HHHHHHHHHTS--CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc---EEEecccccceee-cCceEEEeCC-------HHHHHHHHHhC--CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 7888999997655 2234444543 45666553322 1222233333233333334456678888888
Q ss_pred HHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCe---E-EecCC----------
Q 014603 323 RETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV---I-VLPGI---------- 385 (422)
Q Consensus 323 ~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi---~-v~~g~---------- 385 (422)
.++.+++.+.|+++. +-.+...|.+...+-+.+............++-..| -..+| - |.+|.
T Consensus 342 ~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~L-f~r~vsG~Rvv~~~~~~~i~g~~f~ 420 (501)
T 3hl2_A 342 KEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSML-FTRQVSGARVVPLGSMQTVSGYTFR 420 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHH-HHTTCCSCEEECTTCCEEETTEEES
T ss_pred HHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHH-HhcCCCcceeecCCCceEECCeeec
Confidence 899999999888742 333344666666666666542111111123333333 33344 3 34444
Q ss_pred CCCC------CCeEEEEec--cChHHHHHHHHHHHHHHHHhcccC
Q 014603 386 TVGL------KDWLRITFA--VEPSALEDGLGRMKAFYDRHAKKQ 422 (422)
Q Consensus 386 ~~~~------~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~~~ 422 (422)
.|+. ..++-++.+ ++++|++.++++|++++.++++++
T Consensus 421 ~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~ 465 (501)
T 3hl2_A 421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKER 465 (501)
T ss_dssp STTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3332 346666665 899999999999999999987763
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-16 Score=142.92 Aligned_cols=333 Identities=14% Similarity=0.072 Sum_probs=208.3
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC------CCCCHHHHHHHHHHHhhcCCCCCCCC----CEEEecCHHHHHHHHHHHhc
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS------TVGILPARRAIADYLNRDLPYKLSPD----DVYLTLGCTQAIEVILTVLA 131 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~l~~~~~~~~~~~----~i~~~~g~~~a~~~~~~~l~ 131 (422)
-.++.|++++-..+.+...-+|+- -..+.+++....+...+.++ .+.. +|. -.||+.|+.+++.+++
T Consensus 65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~--a~~A~w~VNVQ-P~SGs~AN~avy~All 141 (490)
T 3ou5_A 65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQ-PYSGSPANLAVYTALL 141 (490)
T ss_dssp CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTT--CCTTTEEEECC-CSSHHHHHHHHHHHHC
T ss_pred cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhC--CCccccCCCCC-cCCHHHHHHHHHHHHc
Confidence 356899999988887654444442 22355666666666666665 2332 233 3467889999999999
Q ss_pred CCCCEEEecCCCccchHHHH--------hhCC--CeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeCCCCCccccc
Q 014603 132 RPGANILLPRPGFPYYEARA--------THSH--LEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIINPGNPCGNVY 200 (422)
Q Consensus 132 ~~gd~Vl~~~~~~~~~~~~~--------~~~g--~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~nptG~~~ 200 (422)
+|||+|+..+..+.+..... ...| .+...++++++ +..+|.+++++...+ ++++|++-....|-=.
T Consensus 142 ~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~kPklIi~G~SaY~r~i-- 218 (490)
T 3ou5_A 142 QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLFRPRLIIAGTSAYARLI-- 218 (490)
T ss_dssp C-CCCEECBC----------------------------CBCEETT-TTEECHHHHHHHHHHHCCSEEEECCSSCCSCC--
T ss_pred CCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCC-CCcccHHHHHHHHhhcCCCeEEECCccCcccc--
Confidence 99999999888775542211 1122 24455666553 457999999986644 6777765444443322
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCccc--
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQ-- 277 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~-- 277 (422)
+++++.++|++-|.++++|.+|. ++.-.|..+.++.. .| ++.+|.+|+ +.|.|.|.+++++.....+
T Consensus 219 ---d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~--AD---vVTtTTHKT--LrGPrGG~Il~~~~~~~~~~k 288 (490)
T 3ou5_A 219 ---DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH--AD---IVTTTTHKT--LRGARSGLIFYRKGVKAVDPK 288 (490)
T ss_dssp ---CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT--CS---EEEEESSST--TCSCSCEEEEEECSEEEECC-
T ss_pred ---CHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc--ce---EEecccccc--ccCCCceEEEecccccccccc
Confidence 47888999999999999999985 44445555555543 22 888899999 4788889999875210000
Q ss_pred -----chhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE
Q 014603 278 -----DSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF 350 (422)
Q Consensus 278 -----~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 350 (422)
..++.+++..... ..++|.....++...++.+.....++...+++.++.+.|.+.|.+. |+.++........
T Consensus 289 ~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHl 367 (490)
T 3ou5_A 289 TGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHL 367 (490)
T ss_dssp -CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSE
T ss_pred ccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceE
Confidence 0145566665543 3345555555555555655445567888899999999999999988 7775544444566
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEe----cCCCC-CCCCeEEEEec------cChHHHHHHHHHHHHHHH
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITV-GLKDWLRITFA------VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~~-~~~~~iRis~~------~~~~~l~~~~~~l~~~~~ 416 (422)
+++.+.... -....++.+|++.||.+. |+... ...+.|||... ..++|++++.+.|.+++.
T Consensus 368 vLvDl~~~g-----~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 368 VLVDLRPKG-----LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EEEECGGGT-----CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccC-----CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 777774321 133455667788899887 44321 12567999985 457899988888888764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-16 Score=145.83 Aligned_cols=314 Identities=11% Similarity=0.034 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC----CCCEEEecCCCccchHHHHhhCCCeEEEeeccC
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR----PGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (422)
..+.+.+..++.+..|.+ +....++++|+|.+..+++.+.++ +++.|+++..+|.+...++...|++++.++..+
T Consensus 97 ~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~ 175 (450)
T 3bc8_A 97 NKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL 175 (450)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeee
Confidence 345555555555544533 223468888888555544444333 379999999999999999999999988886532
Q ss_pred -CCCcccCHHHHHHhhcC---CceEEEEeCCC-CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccc
Q 014603 166 -AKGWEVDLDAVEALADE---NTVALVIINPG-NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV 240 (422)
Q Consensus 166 -~~~~~~d~~~l~~~~~~---~~~~i~i~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~ 240 (422)
++.+.+|++.|++++++ +.+++++.+|+ +.+|.+ +++++|+++|++||+++++|++|+........ .+-..
T Consensus 176 ~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~-l~~~a 251 (450)
T 3bc8_A 176 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSKCMH-LIQQG 251 (450)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH-HHHHH
T ss_pred cCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchhhhhhHh-HHHHH
Confidence 23578999999998854 35677777774 455666 78999999999999999999999853211000 00011
Q ss_pred c---CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHH
Q 014603 241 F---GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSK 317 (422)
Q Consensus 241 ~---~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 317 (422)
+ ..| .++.|.+|++. .....+++..++ ++..+++........+.+ ++.......+. ...+.+.+
T Consensus 252 ~~~~~AD---~~v~S~HK~l~-a~~~~~~l~~rd-------~~~~~~~~~~~~g~~s~S-psL~l~~~l~~-~G~~g~~~ 318 (450)
T 3bc8_A 252 ARVGRID---AFVQSLDKNFM-VPVGGAIIAGFN-------EPFIQDISKMYPGRASAS-PSLDVLITLLS-LGCSGYRK 318 (450)
T ss_dssp HHHSCCC---EEEEEHHHHHS-CCSSCEEEEESC-------HHHHHHHHHHSCSCBCSH-HHHHHHHHHHH-HHHHHHHH
T ss_pred hcccCCC---EEEECCccCCC-chhccEEEEecC-------HHHHHHHHHHhhcCCccc-HHHHHHHHHHH-HHHHHHHH
Confidence 2 122 67789999954 334467777654 445555543321111122 22222222222 23455666
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHh--cCeEEec-C-------
Q 014603 318 ITDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE--ESVIVLP-G------- 384 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~gi~v~~-g------- 384 (422)
..++..++.+++++.|++++ +..+...+..+.-..+.++........+...+...+... .|..+.+ |
T Consensus 319 ~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~ 398 (450)
T 3bc8_A 319 LLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSG 398 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhH
Confidence 76777777888888887766 665443333221222223211000001334444443221 1333331 0
Q ss_pred C---CCC------CCCeEEEEec--cChHHHHHHHHHHHHHHHHhccc
Q 014603 385 I---TVG------LKDWLRITFA--VEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 385 ~---~~~------~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
. .|+ ...++=+.++ .+++++++++++|+++.++++++
T Consensus 399 ~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 399 HTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp EEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 1 111 1344544444 78999999999999998877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 422 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 3e-68 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-64 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-59 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 2e-55 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 2e-51 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 1e-42 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-40 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 2e-36 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 2e-35 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 2e-33 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 5e-31 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-30 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-29 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 4e-28 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 9e-28 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 9e-28 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 5e-26 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-25 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 2e-25 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 4e-25 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-24 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 1e-24 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 5e-24 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 5e-19 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 1e-18 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 7e-11 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 1e-06 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 6e-05 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 6e-04 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 7e-04 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 0.001 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 0.001 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 0.002 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 219 bits (559), Expect = 3e-68
Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 20/376 (5%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
K + + G+P F T V+A ++ + Y G R AIA L
Sbjct: 26 KAEGIDVCSFSAGEPD----FNTPKHIVEAAKAALEQGKTR-YGPAAGEPRLREAIAQKL 80
Query: 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH 160
RD D++ +T G Q+I ++ + PG +++P P + Y +
Sbjct: 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVI 140
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
++V + + T LV P NP G VYT ++ IA+ A + G+ V+
Sbjct: 141 LPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVL 200
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVP--VLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278
+DE+Y+ + + + + +G + +K + + GWR+G+L P
Sbjct: 201 SDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPL----- 255
Query: 279 SGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPC 338
+ + K + +S+ TF Q E +++ + E D L +P
Sbjct: 256 --VKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEML-AAFAERRRYMLDALNAMPG 312
Query: 339 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA 398
+ CP KP+G+ ++ + + S ++F +L + V +PG G D +R+++A
Sbjct: 313 LECP-KPDGAFYMFPSIA----KTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367
Query: 399 VEPSALEDGLGRMKAF 414
+ ++ G+ R++ F
Sbjct: 368 TDLDTIKRGMERLEKF 383
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 210 bits (534), Expect = 1e-64
Identities = 81/374 (21%), Positives = 152/374 (40%), Gaps = 19/374 (5%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
+ L+ L G+P F T +A ++ + Y+ GI R A+A+
Sbjct: 27 RRQGVDLVALTAGEPD----FDTPEHVKEAARRALAQGKTK-YAPPAGIPELREALAEKF 81
Query: 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH 160
R+ ++P++ +T+G +QA+ + + PG +++ P + Y + V
Sbjct: 82 RRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVE 141
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
+ LP +G+ D + V T ALV+ +P NP G VY + L+ +A A + ++
Sbjct: 142 VETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLV 201
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280
+DE+Y+HL + F P V LT+ +K + + GWR+G+ P +++
Sbjct: 202 SDEIYEHLLYEGEHFSPGRVAPE--HTLTVNGAAKAFAMTGWRIGYACG--PKEVIKA-- 255
Query: 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340
+ S+ S D ++ F + R D+ + L +
Sbjct: 256 -MASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKA 314
Query: 341 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE 400
+P G+ +V++ + I D A + E V V+PG +R+++A
Sbjct: 315 V--RPSGAFYVLMDTS-----PIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATS 367
Query: 401 PSALEDGLGRMKAF 414
L L R
Sbjct: 368 EENLRKALERFARV 381
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 196 bits (499), Expect = 2e-59
Identities = 79/374 (21%), Positives = 156/374 (41%), Gaps = 21/374 (5%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
+ +I LG G+P F T + ++ Y +G+L R AIA+ L +
Sbjct: 25 KDVISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQN 79
Query: 105 PYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163
+ P ++ + LG QA + L+ + G +L+P P F Y + +
Sbjct: 80 GIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPT 139
Query: 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223
+ +++D ++ + T AL+I +P NP G V T + L++IA+ + ++VI+DE
Sbjct: 140 YEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDE 199
Query: 224 VYDHLAFGNTPFVPM-GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIV 282
VY+H + + + + G +T+ SK + + GWRLG++
Sbjct: 200 VYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERM----- 254
Query: 283 DSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP 342
N + A + ++ + ++ + RL
Sbjct: 255 -VKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRL--NEMGLPT 311
Query: 343 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVE 400
KP+G+ ++ ++ + + +F+ + KE V V+PG G + ++RI++A
Sbjct: 312 VKPKGAFYIFPRIR----DTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATA 367
Query: 401 PSALEDGLGRMKAF 414
LE+ + RM+
Sbjct: 368 YEKLEEAMDRMERV 381
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 185 bits (471), Expect = 2e-55
Identities = 101/372 (27%), Positives = 167/372 (44%), Gaps = 12/372 (3%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
+I L GDP F F+ +A +++ N Y + G+ R+AI + R
Sbjct: 30 IKVIRLNIGDPVKFD-FQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKN 87
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
++PDDV +T T+A+++I L PG IL+P P +P Y + + +
Sbjct: 88 GVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTI 147
Query: 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224
+ W+ D+D + + T A+ +INP NP G +Y + L++I A + I VI+DE+
Sbjct: 148 EEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEI 207
Query: 225 YDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
YD + + P + VPV+ + +SK + GWRLG++ DP L + + ++
Sbjct: 208 YDLMTYEGEHISPGSLTKD-VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSE--VREA 264
Query: 285 IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344
I I P T Q A L ++ + L+E D RL EIP I+ K
Sbjct: 265 IDRLARIRLCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTT-K 322
Query: 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPS 402
P+G+ ++ K+ +D EF L + V+ + G G R F
Sbjct: 323 PQGAFYIFPKIEVG---PWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIE 379
Query: 403 ALEDGLGRMKAF 414
LE+ + R + F
Sbjct: 380 ILEEAMDRFEKF 391
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 176 bits (446), Expect = 2e-51
Identities = 51/453 (11%), Positives = 126/453 (27%), Gaps = 81/453 (17%)
Query: 12 WGFKANEELKTASGITVRGVLNSLL--------------ENLNKNDTRPLIP-----LGH 52
W KA EE + + I + L D I +
Sbjct: 4 WTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVAS 63
Query: 53 GDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA--RRAIADYLNRDLPYKLSP 110
GD + A++ S ++ + + I + +
Sbjct: 64 GDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV--GNAAA 121
Query: 111 DDVYLTLGC--TQAIEVILTVLAR--------PGANILLPRPGFPYYEARATHSHLEVRH 160
D Y+ G TQ I ++ L+ P + ++ P +P + + + +
Sbjct: 122 KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV 181
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
+ + +++ ++ +P NP G + ++
Sbjct: 182 WAG--------NAANYVNVSNPEQYIEMVTSPNNPEGLLRH--------------AVIKG 219
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280
+YD + + + P+ + L ++SK G R GW + D +
Sbjct: 220 CKSIYDMVYYWPH-YTPI--KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNL-- 274
Query: 281 IVDSIKSFLNISSDPATFIQGAVPQILE----------KTEEEFFSKITDILRETADICC 330
+ + Q ++L+ T + + LRE
Sbjct: 275 ----LNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNIT 330
Query: 331 DRLKEIPCITCPKKPEGSMFVMVKL------NYSLLEGINSDMEFALKLAKEESVIVLPG 384
L + + + P+ + +Y+ ++ + + + + + G
Sbjct: 331 ALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNG 390
Query: 385 ITVGL-KDWLRITFAVEPSALEDGLGRMKAFYD 416
+ ++R++ + + +K
Sbjct: 391 VGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVK 423
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 152 bits (384), Expect = 1e-42
Identities = 111/399 (27%), Positives = 195/399 (48%), Gaps = 14/399 (3%)
Query: 32 LNSLLENLNKN-DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGIL 90
+ ++ +N + +P+I L GDP+ + T++ + + ++ S N Y TVG
Sbjct: 16 IRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSP 75
Query: 91 PARRAIADYLNR------DLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGF 144
AR A+A + +L + D+V L G + I + +T + G L+P+PGF
Sbjct: 76 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGF 135
Query: 145 PYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204
P+YE + + ++ P WE DLD + L D+ T L++ NP NPCG+ ++ +H
Sbjct: 136 PHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKH 195
Query: 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP----MGVFGSIVPVLTLGSISKRWIVP 260
++ I A++L + + +DE+Y + F + F + VP + LG +K +VP
Sbjct: 196 VEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVP 255
Query: 261 GWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITD 320
GWRLGWL+ + ++ +K + P T +Q A+ + L T +E +I
Sbjct: 256 GWRLGWLLY--VDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVA 313
Query: 321 ILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI 380
+ E+A + + E + P G+M++M +++ I +D+EF KL +EE+V
Sbjct: 314 KIEESAMYLYNHIGECIGLAPTM-PRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQ 372
Query: 381 VLPGITVGLKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419
VLPG + R+T + + R+KAF RHA
Sbjct: 373 VLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 411
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 146 bits (368), Expect = 1e-40
Identities = 83/370 (22%), Positives = 154/370 (41%), Gaps = 25/370 (6%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
+I L G+P F T V+ V ++ Y+ GI R IA +
Sbjct: 28 EDVINLTAGEPD----FPTPEPVVEEAVRFLQKGEVK-YTDPRGIYELREGIAKRIGERY 82
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
+SPD V +T G QA+ L PG +++ P + Y + + V +
Sbjct: 83 KKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETF 142
Query: 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224
+K ++ L+ VE L T A++I +P NP G VY + L+ + AKK +I+DEV
Sbjct: 143 MSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEV 202
Query: 225 YDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
YD L + + + V ++ + SK + GWR+G+L++S+ +
Sbjct: 203 YDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKV---------AT 253
Query: 285 IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344
S + + + + + T R+ + + + + +
Sbjct: 254 AVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFV----E 309
Query: 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSAL 404
PEG+ ++ K+ D++F +L +E+ V ++PG ++R++FA L
Sbjct: 310 PEGAFYLFFKVR-------GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERL 362
Query: 405 EDGLGRMKAF 414
+ L R++ F
Sbjct: 363 TEALDRIEDF 372
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 136 bits (342), Expect = 2e-36
Identities = 71/359 (19%), Positives = 137/359 (38%), Gaps = 31/359 (8%)
Query: 83 YSSTVGILPARRAIADYLN--RDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140
+ G+ ++A+ D++ R P+ + LT G T A E + LA PG +L+P
Sbjct: 80 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 139
Query: 141 RPGFP-YYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALVIINPG 193
P +P + + +E+ + G+++ A+E E +++ NP
Sbjct: 140 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPS 199
Query: 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM----------GVFGS 243
NP G T L + + GI +I+DE+Y AF + F+ +
Sbjct: 200 NPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 259
Query: 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAV 303
V + S+SK +PG+R+G + ++D +V + + +
Sbjct: 260 WQRVHVVYSLSKDLGLPGFRVGAIYSNDDM-------VVAAATKMSSFGLVSSQTQHLLS 312
Query: 304 PQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKL-NYSLLEG 362
+ +K + + + + I+C +F V + +
Sbjct: 313 AMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL-NGNAGLFCWVDMRHLLRSNT 371
Query: 363 INSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSA-LEDGLGRMKAFYDRH 418
++ME K+ E + + PG + W R+ FA P L+ + R+KAF +
Sbjct: 372 FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (334), Expect = 2e-35
Identities = 72/398 (18%), Positives = 141/398 (35%), Gaps = 35/398 (8%)
Query: 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-ARFNCYSSTVGILPARRAIADYLNRD 103
++ LG G FP F AV+A H+V N Y+ T G P + +A +
Sbjct: 25 HDVVNLGQG----FPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGEL 80
Query: 104 LPYKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFD 162
L ++ P V +T+G A+ L G +++ P F YE +
Sbjct: 81 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVS 140
Query: 163 LLP----------AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
L P + W++D + T ALV+ P NP G V++ + L+ +A
Sbjct: 141 LKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLC 200
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSD 271
++ ++ I DEVY + + + + + LT+GS K + GW++GW++ D
Sbjct: 201 QQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD 260
Query: 272 PNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331
S + + + + + + +
Sbjct: 261 HI---MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM 317
Query: 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLE--------GINSDMEFALKLAKEESVIVLP 383
P P+GS F++ ++ + D F + K + ++ +P
Sbjct: 318 IRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIP 377
Query: 384 GITVG-------LKDWLRITFAVEPSALEDGLGRMKAF 414
++R F + + L+ +++ +
Sbjct: 378 VSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKW 415
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 127 bits (319), Expect = 2e-33
Identities = 83/389 (21%), Positives = 149/389 (38%), Gaps = 31/389 (7%)
Query: 47 LIPLGHG--DPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDL 104
+I L G P FP +AV+ + + + Y +T G P R A+A ++ +
Sbjct: 31 VISLAGGLPAPETFPVETIKKIAVEVLEEH--ADKALQYGTTKGFTPLRLALARWMEKRY 88
Query: 105 PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
+S ++ G QA+++I V PG I++ P + + E L
Sbjct: 89 DIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLD 148
Query: 165 P----AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
E L+ + + + NP G + +K+ E A + +++
Sbjct: 149 DKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIV 208
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP--NGILQD 278
D Y L + P P+ F V+ LG+ SK + PG+R+GW+ +
Sbjct: 209 EDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSK-ILAPGFRIGWVAAHPHLIRKMEIA 267
Query: 279 SGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IP 337
+D + + G + + + K E + + D + L+E +P
Sbjct: 268 KQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRR--------DAMLEALEEYMP 319
Query: 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWL 393
KPEG MFV V L EGI D + ++ A + V +PG + K+ +
Sbjct: 320 EGVEWTKPEGGMFVRVTLP----EGI--DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTM 373
Query: 394 RITFA-VEPSALEDGLGRMKAFYDRHAKK 421
R+ F V + +G+ R+ K+
Sbjct: 374 RLNFTYVPEETIREGVRRLAETIKEEMKR 402
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 120 bits (302), Expect = 5e-31
Identities = 64/353 (18%), Positives = 132/353 (37%), Gaps = 29/353 (8%)
Query: 83 YSSTVGILPARRAIADYLNR--DLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140
+ G+ R+AIA ++ + + P+ V + G T A E I+ LA PG L+P
Sbjct: 79 FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVP 138
Query: 141 RPGFP-YYEARATHSHLEVRHFDLLPAKGWEVDL------DAVEALADENTVALVIINPG 193
P +P + + +++ + +++ ++ L++ NP
Sbjct: 139 SPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPS 198
Query: 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP------- 246
NP G L+ + + I ++ DE+Y F FV +
Sbjct: 199 NPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKD 258
Query: 247 -VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQ 305
V + S+SK +PG+R+G + + + + +V+ + +
Sbjct: 259 LVHIVYSLSKDMGLPGFRVGIIYSFNDD-------VVNCARKMSSFGLVSTQTQYFLAAM 311
Query: 306 ILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE-GIN 364
+ ++ + F + + + E+ I C K +F + L L E +
Sbjct: 312 LSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL-KNNAGLFCWMDLRPLLRESTFD 370
Query: 365 SDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALEDGLGRMKAF 414
S+M + + + V PG + W R+ FA ++ ++ L R++ F
Sbjct: 371 SEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRF 423
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 1e-30
Identities = 57/382 (14%), Positives = 98/382 (25%), Gaps = 47/382 (12%)
Query: 41 KNDTRP-LIPLG-------HGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA 92
K D R + L G + A ++A H Y G+
Sbjct: 21 KEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASL-----YLPMEGLNCY 75
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEV----ILTVLARPGANILLPRPGFPYYE 148
R AIA L L V + + P + + + P + +
Sbjct: 76 RHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHV 135
Query: 149 ARATHSHLEVRHFDLLPAKGWEVDLDAVEAL---ADENTVALVIINPGNPCGNVYTYQHL 205
A + EV + V + + A ++ L+ NP G T
Sbjct: 136 AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQW 195
Query: 206 QKIAETAKKLGIMVIADEVYDHLAFGNTPFVP--MGVFGSIVPVLTLGSISKRWIVPGWR 263
+ E K ++ D Y G + + +P L S SK + + G R
Sbjct: 196 DAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGER 255
Query: 264 LGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE-----EEFFSKI 318
+G L + + + S P F V +L ++
Sbjct: 256 VGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEM 315
Query: 319 TDILRETADICCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 376
+ L + MF L +L +E
Sbjct: 316 RTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL----------SAAQVDRLREE 365
Query: 377 ESVIVLPGITVGLKDWLRITFA 398
V ++ R+ A
Sbjct: 366 FGVYLIASG--------RMCVA 379
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 117 bits (293), Expect = 1e-29
Identities = 54/412 (13%), Positives = 104/412 (25%), Gaps = 59/412 (14%)
Query: 18 EELKTASGITVRGVLNSLLENLNKNDTRP-LIPLG-------HGDPSAFPSFRTASVAVD 69
E+ A + V ++ + D P + LG P P R +
Sbjct: 7 AEVPQAQPVLVFKLIADF-----REDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIA 61
Query: 70 AIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD---------DVYLTLGCT 120
Y +G+ R + D L
Sbjct: 62 NNSSLNHE-----YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGA 116
Query: 121 QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL-PAKGWEVDLDAVEAL 179
+ + + + P + + T + + + +DL +
Sbjct: 117 EFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSD 176
Query: 180 AD---ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFV 236
+ E ++ ++ NP G T + ++IA K+ + D Y A GN
Sbjct: 177 LENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKD 236
Query: 237 PMGVF---GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS 293
+ + S SK + + R+G L + K S
Sbjct: 237 AWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWS 296
Query: 294 DPATFIQGAVPQI-----LEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK--KPE 346
+P V + L + D + RL+ + +
Sbjct: 297 NPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQ 356
Query: 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA 398
MF L + + L ++ + +LP RI
Sbjct: 357 IGMFSFTGL----------NPKQVEYLINQKHIYLLPSG--------RINMC 390
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 112 bits (281), Expect = 4e-28
Identities = 58/413 (14%), Positives = 124/413 (30%), Gaps = 60/413 (14%)
Query: 18 EELKTASGITVRGVLNSLLENLNKNDTRP-LIPLG-------HGDPSAFPSFRTASVAVD 69
++ + G+ D R + LG +G P PS + A +
Sbjct: 6 NNIELLPPDALFGIKQRY-----GQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIH 60
Query: 70 AIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTV 129
S+ + Y G+ A + L D V + + ++
Sbjct: 61 ND-----SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISA 115
Query: 130 LA----RPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENT- 184
P + L +P + + A + L+ + + +DL+ +
Sbjct: 116 KFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE 175
Query: 185 --VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP----- 237
+ ++ NP G T + +I + + + D Y A G+
Sbjct: 176 GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRL 235
Query: 238 -MGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP----NGILQDSGIVDSIKSFLNIS 292
+ ++ PV S +K + G R+G + N ++ + K +
Sbjct: 236 GVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEV 295
Query: 293 SDPATFIQGAVPQILEKTE-----EEFFSKITDILRETADICCDRLKEI--PCITCPKKP 345
S+P + V ++LE E + ++ + + D L ++ P
Sbjct: 296 SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN 355
Query: 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA 398
+ MF L + +L + +V ++ R + A
Sbjct: 356 QCGMFSFTGL----------TPQMVKRLEETHAVYLVASG--------RASIA 390
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 111 bits (278), Expect = 9e-28
Identities = 74/393 (18%), Positives = 142/393 (36%), Gaps = 33/393 (8%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRS--ARFNCYSSTVGILPARRAIADYLNRDLP 105
+ LG G FP + A++A+ + S N Y+ G +A++ ++ +
Sbjct: 29 LNLGQG----FPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVD 84
Query: 106 YKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL 164
++P V +T+G +A+ + G +++ P F YE + R L
Sbjct: 85 RTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLK 144
Query: 165 PAKG--------WEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216
P K W +D + +EAL +E T ++I P NP G V L+ +A KK
Sbjct: 145 PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWN 204
Query: 217 IMVIADEVY-DHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275
++ ++DEVY + + G +T+GS K + + GW++GW +
Sbjct: 205 VLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLK 264
Query: 276 LQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335
+ + + + + L+ E F S A
Sbjct: 265 NLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISG---ELMAKRDYMASFL 321
Query: 336 IPCITCPKKPEGSMFVMV-------KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 388
P P+G F++ K++ + D F + K + +P
Sbjct: 322 AEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFY 381
Query: 389 L-------KDWLRITFAVEPSALEDGLGRMKAF 414
+D++R F + L+ ++ +
Sbjct: 382 SEPNKHLGEDFVRYCFFKKDENLQKAAEILRKW 414
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 111 bits (278), Expect = 9e-28
Identities = 65/405 (16%), Positives = 119/405 (29%), Gaps = 53/405 (13%)
Query: 18 EELKTASGITVRGVLNSLLENLNKNDTRP-LIPLG-------HGDPSAFPSFRTASVAVD 69
E + A + G+ + + D RP I LG G S +
Sbjct: 3 ENITAAPADPILGLADLF-----RADERPGKINLGIGVYKDETGKTPVLTSVK------K 51
Query: 70 AIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTV 129
A + + + Y GI R + L ++ + +
Sbjct: 52 AEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAA 111
Query: 130 LARPGAN----ILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE--- 182
+ + P +P +++ + LEVR + A+ +D DA+ +E
Sbjct: 112 DFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA 171
Query: 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP--MGV 240
V L NP G T + Q +A+ + + G + + D Y A G
Sbjct: 172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAF 231
Query: 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQ 300
++ S SK + + R+G + D + S+P
Sbjct: 232 AAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGA 291
Query: 301 GAVPQILEKTE-----EEFFSKITDILRETADICCDRLKEIPCITCPK--KPEGSMFVMV 353
V IL E+ + + ++ + + L+E + MF
Sbjct: 292 SVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFS 351
Query: 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA 398
L E L+L +E V + R+ A
Sbjct: 352 GLT----------KEQVLRLREEFGVYAVASG--------RVNVA 378
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 106 bits (264), Expect = 5e-26
Identities = 74/370 (20%), Positives = 122/370 (32%), Gaps = 23/370 (6%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
I L G FP F + + H V N Y+ G+ R AIA R Y+
Sbjct: 29 INLSQG----FPDFDGPRYLQERLAHHVA-QGANQYAPMTGVQALREAIAQKTERLYGYQ 83
Query: 108 LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK 167
D + ++ A A + L
Sbjct: 84 PDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP 143
Query: 168 GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH 227
+ VD AL E T +++ P NP V+ + + I VI+DEVY+H
Sbjct: 144 HFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEH 203
Query: 228 LAFGNTPFVPMGVFGSIVP-VLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286
+ F + + + + S K + + GW++G+ V P I+
Sbjct: 204 INFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPI--------SAEIR 255
Query: 287 SFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346
+ + + E E + + D R+ DI + L E P E
Sbjct: 256 KVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILP--CE 313
Query: 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPS 402
G+ F++V + D+EF L +E V +P +R+ FA + S
Sbjct: 314 GTYFLLVDYS---AVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKES 370
Query: 403 ALEDGLGRMK 412
L R++
Sbjct: 371 TLLAAAERLR 380
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 104 bits (260), Expect = 1e-25
Identities = 88/372 (23%), Positives = 142/372 (38%), Gaps = 37/372 (9%)
Query: 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYK 107
+ LG G FPS ++A+ ++ R + Y+ G+ R A+A+ +
Sbjct: 28 VNLGQG----FPSNPPPPFLLEAVRRAL--GRQDQYAPPAGLPALREALAEE------FA 75
Query: 108 LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK 167
+ P+ V +T G T+A+ V+L L PG +++ P F Y A + + R L
Sbjct: 76 VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTP 135
Query: 168 GWEV-DLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD 226
DL A+E T AL++ P NP G V+ + L+ IA A+ + +I+DEVYD
Sbjct: 136 EGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYD 195
Query: 227 HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK 286
L +G P + R G+R+GW+V
Sbjct: 196 ELYYGERPRRLREFAPERTFTVGSAGK--RLEATGYRVGWIVGPKEFMPRLA------GM 247
Query: 287 SFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346
S P G + E F+ + + R D+ L+ + + PE
Sbjct: 248 RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYV-PE 305
Query: 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPS 402
G+ F+M +L A +L +E V ++P L KD R F
Sbjct: 306 GTYFLMAEL----------PGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEE 355
Query: 403 ALEDGLGRMKAF 414
L L R+
Sbjct: 356 ELHLALERLGRV 367
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 105 bits (261), Expect = 2e-25
Identities = 59/384 (15%), Positives = 102/384 (26%), Gaps = 50/384 (13%)
Query: 41 KNDTRP-LIPLG-------HGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA 92
K DT + LG +G P R A Y G+
Sbjct: 23 KRDTNSKKMNLGVGAYRDDNGKPYVLNCVR------KAEAMIAAKKMDKEYLPIAGLADF 76
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLG-----CTQAIEVILTVLARPGANILLPRPGFPYY 147
RA A+ + G + L + ++ LP+P + +
Sbjct: 77 TRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH 136
Query: 148 EARATHSHLEVRHFDLLPAKGWEVDLDAVEALA---DENTVALVIINPGNPCGNVYTYQH 204
+ L+++ + K +D E ++ L+ NP G +
Sbjct: 137 TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQ 196
Query: 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG---VFGSIVPVLTLGSISKRWIVPG 261
+++A KK ++ D Y A G+ + V+ S +K + G
Sbjct: 197 WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG 256
Query: 262 WRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE-----EEFFS 316
R G + + S+P IL E
Sbjct: 257 ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVK 316
Query: 317 KITDILRETADICCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLA 374
+ D + LK+ + MF L E +L
Sbjct: 317 GMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----------PEQVERLT 366
Query: 375 KEESVIVLPGITVGLKDWLRITFA 398
KE S+ + RI+ A
Sbjct: 367 KEFSIYMTKDG--------RISVA 382
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (258), Expect = 4e-25
Identities = 80/384 (20%), Positives = 142/384 (36%), Gaps = 34/384 (8%)
Query: 41 KNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYL 100
K + L G P +T V + I YS + GI R A A Y
Sbjct: 24 KKRGVRIHHLNIGQPD----LKTPEVFFERIYE--NKPEVVYYSHSAGIWELREAFASYY 77
Query: 101 NRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH 160
R + P++V +T G ++AI V+A PG IL+ P + Y A A + +++
Sbjct: 78 KRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIP 137
Query: 161 FDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220
+G+ + +E+ +E T +V+ NP NP G VY ++ + E A++ G+ +I
Sbjct: 138 VTRRMEEGFAIP-QNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLI 196
Query: 221 ADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG 280
DEVY + V+ + S+SK++ G R+G L+T +
Sbjct: 197 VDEVYSE--IVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEE------- 247
Query: 281 IVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCIT 340
+ A + + + ++ F + E +
Sbjct: 248 --LISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLK 305
Query: 341 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----K 390
KP G+ ++ +L + EFA + + E+ +V P L K
Sbjct: 306 RFTKPSGAFYITAEL------PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 359
Query: 391 DWLRITFAVEPSALEDGLGRMKAF 414
+RI +E L + +
Sbjct: 360 KEIRIACVLEKDLLSRAIDVLMEG 383
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 102 bits (254), Expect = 1e-24
Identities = 55/379 (14%), Positives = 105/379 (27%), Gaps = 45/379 (11%)
Query: 41 KNDTRP-LIPLG-------HGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPA 92
+ D R I LG G + A + + Y+ G
Sbjct: 21 RADPRQGKIDLGVGVYKDATGHTPIMRAVH------AAEQRMLETETTKTYAGLSGEPEF 74
Query: 93 RRAIADYLNRDLPYKLSPDD-VYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA 151
++A+ + + D + + + L +A P + + P +P + +
Sbjct: 75 QKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM 134
Query: 152 THSHLEVRHFDLLPA---KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKI 208
L V+ + A + A A A + + L+ NP G T +I
Sbjct: 135 NFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEI 194
Query: 209 AETAKKLGIMVIADEVYDHLAFGN--TPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGW 266
A +K G + + D Y G + I VL S SK + + R G
Sbjct: 195 ASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGC 254
Query: 267 LVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQI-----LEKTEEEFFSKITDI 321
L+ + ++ S P V + L +
Sbjct: 255 LLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSG 314
Query: 322 LRETADICCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV 379
+ + L+++ MF + E ++ +E +
Sbjct: 315 MLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP----------EQVKRIKEEFGI 364
Query: 380 IVLPGITVGLKDWLRITFA 398
++ RI A
Sbjct: 365 YMVGDS--------RINIA 375
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 102 bits (253), Expect = 1e-24
Identities = 51/383 (13%), Positives = 113/383 (29%), Gaps = 19/383 (4%)
Query: 36 LENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95
+ + N ++PL D F+ ++ + + T ++
Sbjct: 22 MYSQNPEVGNEVVPLSVADME----FKNPPELIEGLKKYLDE---TVLGYTGPTEEYKKT 74
Query: 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANIL-LPRPGFPYYE-ARATH 153
+ ++ + + D + T G A+ + +PG ++ + +P++ +
Sbjct: 75 VKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQE 134
Query: 154 SHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAK 213
+ + D+N AL+ +P NP G V+ LQKI +
Sbjct: 135 RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVL 194
Query: 214 KLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273
K +M+ +DE++ L + T+ + +G N
Sbjct: 195 KSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN 254
Query: 274 GILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRL 333
+++ + T A ++ + I I + +
Sbjct: 255 PDIRE---RFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFE 311
Query: 334 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KD 391
P I P EG+ + + + + G G
Sbjct: 312 VNHPEIKAPL-IEGTYLQWIDFR----ALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIG 366
Query: 392 WLRITFAVEPSALEDGLGRMKAF 414
+ RI A S +++ L R+
Sbjct: 367 FERINLAAPSSVIQESLERLNKA 389
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 100 bits (248), Expect = 5e-24
Identities = 61/372 (16%), Positives = 126/372 (33%), Gaps = 20/372 (5%)
Query: 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPY 106
L+P D F TA ++A+ + F YS AIA + +
Sbjct: 1 LLPFTISDMD----FATAPCIIEALNQRLMHGVFG-YSRWKND-EFLAAIAHWFSTQHYT 54
Query: 107 KLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRH--FDLL 164
+ V + ++ + G +++ P + + + V +
Sbjct: 55 AIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQ 114
Query: 165 PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224
+ LA +++ +P NP G V+T L+ +A+ ++ G+ VI+DE+
Sbjct: 115 ADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEI 174
Query: 225 YDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284
+ + +G P +P L S SK + +P + + + + +
Sbjct: 175 HMDMVWGEQPHIPWSNVARGDWA-LLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKG 233
Query: 285 IKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344
+ S T A Q + + L++ D++ +
Sbjct: 234 RDGLSSPSVLALTAHIAAYQQ-----GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI 288
Query: 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPS 402
P+ + + L D L ++E V ++PG T G + ++R+ S
Sbjct: 289 PQSTYLAWLDLR----PLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRS 344
Query: 403 ALEDGLGRMKAF 414
LE G+ +
Sbjct: 345 KLEKGVAGLINA 356
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 86.4 bits (212), Expect = 5e-19
Identities = 65/392 (16%), Positives = 134/392 (34%), Gaps = 26/392 (6%)
Query: 45 RPLIPLGHG--DPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNR 102
+ I G G DP FP A +A + I YS+T G ++ I L R
Sbjct: 38 KDAISFGGGVPDPETFPRKELAEIAKEII--EKEYHYTLQYSTTEGDPVLKQQILKLLER 95
Query: 103 DLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFD 162
+D + +Q ++ L + + A +L
Sbjct: 96 MYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVV 155
Query: 163 LLPAKGWEVDL-------DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215
L G ++++ + V+ N NP G + + + + E A+K
Sbjct: 156 PLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY 215
Query: 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGI 275
+ ++ D+ Y L + P+ G V+ L + + + PG R+G +
Sbjct: 216 DLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL-NTFSKVLAPGLRIGM--VAGSKEF 272
Query: 276 LQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335
++ + + + L + + + + +
Sbjct: 273 IRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSD 332
Query: 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD---- 391
IP + K EG +F+ + L EG ++ + AK + V +PG + D
Sbjct: 333 IPGVKWV-KSEGGLFIWLTLP----EGFDT--WEMFEYAKRKKVFYVPGRVFKVYDEPSP 385
Query: 392 WLRITFAVEPSA-LEDGLGRMKAFYDRHAKKQ 422
+R++F + P + +G+ R++ + K++
Sbjct: 386 SMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 417
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 84.6 bits (208), Expect = 1e-18
Identities = 44/328 (13%), Positives = 88/328 (26%), Gaps = 37/328 (11%)
Query: 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLP 140
S+ +L D D + AI + L LP
Sbjct: 44 TYIGSSYFAEKVNEYGLKHLGGD-----ENDKCVGFNRTSSAILATILALKPKKVIHYLP 98
Query: 141 -RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNV 199
PG P E + + D + + D++T+ ++ + + V
Sbjct: 99 ELPGHPSIERSCKIVNAKYFESD---------KVGEILNKIDKDTLVIITGSTMDL--KV 147
Query: 200 YTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV 259
++ +K+ TAK +V D+ P G +V
Sbjct: 148 IELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG-------------ADLV 194
Query: 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKI 318
+ + +VD I + + + + L+ E K
Sbjct: 195 VTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKA 254
Query: 319 TDILRETADICCDRLKEIPCITC-----PKKPEGSMFVMVKLNYSLLEGINSDMEFALKL 373
+ + ++L + + + FV+ ++ I +E L
Sbjct: 255 FERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNL 314
Query: 374 AKEESVIVLPGITV-GLKDWLRITFAVE 400
K +I + + G LRI
Sbjct: 315 LKNYGIITITVAGMPGASKSLRIDLTSR 342
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 60.9 bits (146), Expect = 7e-11
Identities = 41/308 (13%), Positives = 90/308 (29%), Gaps = 30/308 (9%)
Query: 93 RRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT 152
A Y + P+ V ++ G + IE+++ A P Y +
Sbjct: 62 IENYAQY------AGVKPEQVLVSRGADEGIELLIR--AFCEPGKDAILYCPPTYGMYSV 113
Query: 153 HSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETA 212
+ +P + + + + +P NP G + Q + + E
Sbjct: 114 SAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELT 173
Query: 213 KKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272
+ I+V + + + + L ++SK + + G R G+ + ++
Sbjct: 174 RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAI----LRTLSKAFALAGLRCGFTLANEE 229
Query: 273 NGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332
L + +T + Q L + + +
Sbjct: 230 VINLLMK---------VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA 280
Query: 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 392
LKEIPC+ + +++ + + L + ++ L
Sbjct: 281 LKEIPCVEQVF-DSETNYILARFK--------ASSAVFKSLWDQGIILRDQNKQPSLSGC 331
Query: 393 LRITFAVE 400
LRIT
Sbjct: 332 LRITVGTR 339
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 18/138 (13%)
Query: 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILT----VLARPGANILLPRPGFPYY 147
AR IAD + D P ++ T G T++ + + + G +I+ +
Sbjct: 53 ARNQIADLVGAD------PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAV 106
Query: 148 EARATHSHLEVRHFDLL---PAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQH 204
T LE F++ P + +DL +EA ++T+ + I++ N G V
Sbjct: 107 --LDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAA 164
Query: 205 LQKIAETAKKLGIMVIAD 222
I E + GI+ D
Sbjct: 165 ---IGEMCRARGIIYHVD 179
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 42.5 bits (98), Expect = 6e-05
Identities = 51/356 (14%), Positives = 115/356 (32%), Gaps = 50/356 (14%)
Query: 59 PSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118
F VD + + S Y + I YL+ LS ++V + G
Sbjct: 29 NPFPFPEDLVDEVFRRLNSDALRIYYDS-PDEELIEKILSYLD---TDFLSKNNVSVGNG 84
Query: 119 CTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEA 178
+ I ++L ++ + + + + +
Sbjct: 85 ADEIIY-----------VMMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPE 133
Query: 179 LADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM 238
+ + I NP NP G+V+ + +++I +T + + + Y+ F+
Sbjct: 134 VNVGEGDVVFIPNPNNPTGHVFEREEIERILKTGA---FVALDEAYYEFHGESYVDFLKK 190
Query: 239 GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATF 298
+ + + SK + + R+G++V S+ I ++ +
Sbjct: 191 -----YENLAVIRTFSKAFSLAAQRVGYVVASEKF-----------IDAYNRVRLPFNVS 234
Query: 299 IQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYS 358
+ + E F + T + E + L+E+ G+ FV V +
Sbjct: 235 YVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITD--SRGN-FVFVFME-- 289
Query: 359 LLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAF 414
+ E L+ + ++V V ++ +RIT + + L ++ F
Sbjct: 290 -----KEEKERLLEHLRTKNVAV-----RSFREGVRITIG-KREENDMILRELEVF 334
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 39.3 bits (91), Expect = 6e-04
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 172 DLDAVEALADENTVALVIINP--GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA 229
D++A++ DE T A VI+ P G T + L+ E ++ G ++I DE+
Sbjct: 166 DVEALKRAVDEETAA-VILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEI--QTG 222
Query: 230 FGNTPFVPMGVFGSIVPVLTLGS 252
G T IVP + +
Sbjct: 223 MGRTGKRFAFEHFGIVPDILTLA 245
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 18/154 (11%)
Query: 67 AVDAIVHSVRSARFNCYS-------STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119
++ ++ R N S + + + AR +A L +SP +++ T
Sbjct: 17 VLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCA 70
Query: 120 TQAIEVILTVLARPGANILLPRPGFPYYEARATHS--HLEVRHFDL--LPAKGW-EVDLD 174
T++I IL +A P + +L ++ F + +P V L+
Sbjct: 71 TESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLE 130
Query: 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKI 208
+E L DE+T + I+ N G + + + +I
Sbjct: 131 ELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRI 164
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 0.001
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 172 DLDAVEALADENTVALVIINP--GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA 229
DL A+E + VA ++ P G V +L + E + ++ IADE+
Sbjct: 176 DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEI--QTG 233
Query: 230 FGNTPFVPMGVFGSIVP-VLTLG 251
T + ++ P ++ LG
Sbjct: 234 LARTGRWLAVDYENVRPDIVLLG 256
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 38.6 bits (89), Expect = 0.001
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 143 GFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE---NTVALVIINPGNPCGNV 199
G A+ + +F + +V D +EAL +E V I+ P V
Sbjct: 142 GRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGV 201
Query: 200 YTY--QHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVP-VLTLG 251
+LQ + + KK ++ +ADEV G T + ++ P V+ LG
Sbjct: 202 IVPSDNYLQGVYDICKKYNVLFVADEV--QTGLGRTGKLLCVHHYNVKPDVILLG 254
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.002
Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 26/175 (14%)
Query: 67 AVDAIVHSVRSARFNCYSS--------TVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118
+DA R + T + R+ + ++N S +++ G
Sbjct: 38 VIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVFVRG 92
Query: 119 CTQAIEVILTVLAR----PGANILLPRPGFP----YYEARATHSHLEVRHFDLLPAKGWE 170
T+ I ++ G NI++ + ++ E+R L P
Sbjct: 93 TTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--GT 150
Query: 171 VDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVY 225
+ L+ + L DE T L I + N G T L ++ A + G V+ D
Sbjct: 151 LQLETLPTLFDEKTRLLAITHVSNVLG---TENPLAEMITLAHQHGAKVLVDGAQ 202
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 422 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.97 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.97 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.97 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.96 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.96 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.96 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.95 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.94 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.93 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.92 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.9 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.9 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.89 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.89 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.89 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.89 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.89 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.89 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.89 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.88 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.88 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.88 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.87 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.87 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.87 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.87 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.87 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.87 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.86 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.86 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.85 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.85 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.85 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.85 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.84 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.84 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.83 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.83 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.83 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.81 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.81 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.8 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.8 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.8 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.79 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.77 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.77 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.76 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.75 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.74 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.74 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.73 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.7 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.63 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.5 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.37 | |
| d1ofux_ | 119 | Hypothetical protein PA3008 {Pseudomonas aeruginos | 87.21 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.3e-58 Score=436.39 Aligned_cols=384 Identities=21% Similarity=0.377 Sum_probs=336.0
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPAR 93 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr 93 (422)
+++++|+..++++.+..+.+...+. ...|.++|||+.|+|+ +++|+.+++++.+.++++ .++|++..|.+++|
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~--~~~g~~vi~l~~G~p~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lR 73 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAM--KAEGIDVCSFSAGEPD----FNTPKHIVEAAKAALEQG-KTRYGPAAGEPRLR 73 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHH--HTTTCCCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHH
T ss_pred CchhhHhhcCCcCHHHHHHHHHHHH--HHCCCCeEECCCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHH
Confidence 4789999999999877666544332 2247899999999965 788999999999988764 46899999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 94 RAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 94 ~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++++++.+.+|..+++++|++|+|+++++..++++++++||+|++++|+|.+|...++..|..++.++...+++|.+|+
T Consensus 74 ~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~ 153 (388)
T d1j32a_ 74 EAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSP 153 (388)
T ss_dssp HHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCH
T ss_pred HHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCH
Confidence 99999999988989999999999999999999999999999999999999999999999999999999887777889999
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC--CCCeEEEe
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLG 251 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~ 251 (422)
+++++.++++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..... .++++++.
T Consensus 154 ~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~ 233 (388)
T d1j32a_ 154 EQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCS 233 (388)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEE
T ss_pred HHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEec
Confidence 9999999999999999999999999999999999999999999999999999999888766655544432 24789999
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICC 330 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 330 (422)
|+||.|+++|+|+||++++ +++++.+..... ....++...|.++..++... +.++++.++.++++++.+.
T Consensus 234 S~SK~~~~~GlRvG~~~~~--------~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 304 (388)
T d1j32a_ 234 GFAKTYAMTGWRVGFLAGP--------VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS-QDCVQEMLAAFAERRRYML 304 (388)
T ss_dssp ESTTTTTCTTTCCEEEECC--------HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhcchhHeEEEEEC--------HHHHHHHHHhhhhccccccHHHHHHHhhcccch-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 467777766553 34577788888888887653 5788999999999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGR 410 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~ 410 (422)
+.|++++++. +..|++|+|+|++++... .++.++..++++++||.+.||..|+.++++|+++++++++|++++++
T Consensus 305 ~~l~~~~g~~-~~~p~gg~~l~~~l~~~~----~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~r 379 (388)
T d1j32a_ 305 DALNAMPGLE-CPKPDGAFYMFPSIAKTG----RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMER 379 (388)
T ss_dssp HHHHTCTTCB-CCCCCBTTEECCBCGGGT----CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHH
T ss_pred HHHHhCCCCE-ecCCCceEEEEEECCCCC----CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHH
Confidence 9999998888 558999999999887532 26778888888889999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 014603 411 MKAFYDRH 418 (422)
Q Consensus 411 l~~~~~~~ 418 (422)
|+++++.+
T Consensus 380 l~~~l~~l 387 (388)
T d1j32a_ 380 LEKFLHGI 387 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.8e-57 Score=424.61 Aligned_cols=380 Identities=23% Similarity=0.440 Sum_probs=328.1
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
++|+|++...++.||++++... ..+++|+|+.|+|+ +++|+.+++++.+.+.++ .++|++..|.++||+
T Consensus 1 ~~s~~~~~~~~s~ir~~~~~~~------~~~dvi~l~~g~p~----~~~p~~v~~~~~~a~~~~-~~~Y~~~~G~~~lr~ 69 (388)
T d1gdea_ 1 ALSDRLELVSASEIRKLFDIAA------GMKDVISLGIGEPD----FDTPQHIKEYAKEALDKG-LTHYGPNIGLLELRE 69 (388)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHH------HCTTCEECCCCSCC----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHH
T ss_pred ChhhhhhhCCccHHHHHHHHHh------CCCCeEECCCCCCC----CCCCHHHHHHHHHHHhcC-ccCCCCCcCCHHHHH
Confidence 4689999999999999997543 24789999999965 788999999999998764 468999999999999
Q ss_pred HHHHHHhhcCCC-CCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 95 AIADYLNRDLPY-KLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 95 ~ia~~l~~~~~~-~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
++++++.+..+. ...+++|++|+|+++++..++.+++++||+|++++|+|..+...++..|.+++.++.+++++|.+|+
T Consensus 70 aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 149 (388)
T d1gdea_ 70 AIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNV 149 (388)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCH
T ss_pred HHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCH
Confidence 999999865443 4456789999999999999999999999999999999999999999999999999998878899999
Q ss_pred HHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEec
Q 014603 174 DAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGS 252 (422)
Q Consensus 174 ~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s 252 (422)
++|++.++++++++++++|+||||.+++.+++++|+++|++++++||+||+|..+.+.+....++..+.. .+++++++|
T Consensus 150 ~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 229 (388)
T d1gdea_ 150 DELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNG 229 (388)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEE
T ss_pred HHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999998887766666555543 357999999
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICC 330 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 330 (422)
|||.|+++|+|+||++++ +++...+..... ...+++.+.|.++..++.... ..++...++.++++++.+.
T Consensus 230 ~SK~~~~~GlR~G~ii~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 301 (388)
T d1gdea_ 230 FSKTFAMTGWRLGFVAAP--------SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW 301 (388)
T ss_dssp STTTTTCGGGCCEEEECC--------HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCccccEEEEEee--------ccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhh
Confidence 999999999999999986 467777766553 345677788888888887633 4567777888889999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGL 408 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~ 408 (422)
+.|... ++. +..|++|+|+|++++... .++.++...+++++||.+.||..|+. ++++|||++++++++++++
T Consensus 302 ~~l~~~-~~~-~~~p~gg~fl~~~l~~~~----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al 375 (388)
T d1gdea_ 302 KRLNEM-GLP-TVKPKGAFYIFPRIRDTG----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAM 375 (388)
T ss_dssp HHHHHT-TCC-CCCCCBTTEECCBCGGGT----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHH
T ss_pred hhhhhc-ccc-ccCCCceEEEEEECCCCC----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHH
Confidence 999887 566 447999999999987532 26788888888899999999999876 6899999998899999999
Q ss_pred HHHHHHHHHhc
Q 014603 409 GRMKAFYDRHA 419 (422)
Q Consensus 409 ~~l~~~~~~~~ 419 (422)
++|++++++++
T Consensus 376 ~rL~~~l~e~k 386 (388)
T d1gdea_ 376 DRMERVLKERK 386 (388)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 99999999875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.3e-57 Score=423.35 Aligned_cols=376 Identities=22% Similarity=0.394 Sum_probs=322.1
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
+++|+..++++.++++.+.+++. . ..|.++|+|+.|+|+ +++|+.+++++.+.+.++ ..+|++..|.++||++
T Consensus 4 ~~~r~~~~~~s~~~~i~~~a~~~-~-~~G~~vi~l~~g~p~----~~~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~lR~~ 76 (382)
T d1b5pa_ 4 LSRRVQAMKPSATVAVNAKALEL-R-RQGVDLVALTAGEPD----FDTPEHVKEAARRALAQG-KTKYAPPAGIPELREA 76 (382)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHH-H-HTTCCCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-H-hCCCCeEECCCCCCC----CCCCHHHHHHHHHHHhcC-CcCCCCCCCCHHHHHH
Confidence 58899999999999998755542 2 358899999999965 788999999999988775 4589999999999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++.+.++..+++++|++|+|+++++..++++++++||.|++++|+|.++...++..|..++.++..+++++.+|++.
T Consensus 77 ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 156 (382)
T d1b5pa_ 77 LAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPER 156 (382)
T ss_dssp HHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHH
T ss_pred HHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHH
Confidence 99999998999999999999999999999999999999999999999999999999999999999998877888999999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
+++.++++++++++++||||||.+++.+++++|+++|+++|++||+||+|+.+.|++....+... ..++++++.|+||
T Consensus 157 l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~i~~~s~SK 234 (382)
T d1b5pa_ 157 VRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV--APEHTLTVNGAAK 234 (382)
T ss_dssp HHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CTTTEEEEEESTT
T ss_pred HHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc--CCCCEEEEecchh
Confidence 99999989999999999999999999999999999999999999999999999988765544332 3367999999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHH
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKT--EEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
.|+++|+|+||++++ +++++.+..... ....++...+.++..++... .+.++...++.++++++.+.+.
T Consensus 235 ~~~~~GlR~G~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (382)
T d1b5pa_ 235 AFAMTGWRIGYACGP--------KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEG 306 (382)
T ss_dssp TTTCGGGCCEEEECC--------HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHhheEEEEEC--------HHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999986 467777766553 34466677777776666542 2566777888889999999998
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
+... ++. +..|++|+|+|++++... .+...+... +.++||.+.||..|+..+++||+++.++++|++++++|+
T Consensus 307 l~~~-g~~-~~~p~gg~~~~~~~~~~~----~~~~~~~~~-l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~ 379 (382)
T d1b5pa_ 307 LTAL-GLK-AVRPSGAFYVLMDTSPIA----PDEVRAAER-LLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFA 379 (382)
T ss_dssp HHHH-TCC-BCCCSBTTEEEEECTTTC----SSHHHHHHH-HHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGG
T ss_pred Hhhc-CCe-EecCCceEEEeEeCCCCC----CCHHHHHHH-HHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHH
Confidence 8887 677 558999999999885421 144555554 466799999999999999999999999999999999998
Q ss_pred HHH
Q 014603 413 AFY 415 (422)
Q Consensus 413 ~~~ 415 (422)
+++
T Consensus 380 ~~L 382 (382)
T d1b5pa_ 380 RVL 382 (382)
T ss_dssp GGC
T ss_pred HhC
Confidence 753
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.2e-56 Score=425.24 Aligned_cols=401 Identities=29% Similarity=0.529 Sum_probs=336.5
Q ss_pred cCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHH
Q 014603 12 WGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILP 91 (422)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~ 91 (422)
|...++ +..+..-+.||.+.+.++. ..++.++|+|+.|+|+..+..++++.+.+++.+.+.....++|++..|.++
T Consensus 1 ~~~~~~-~~~~~~~~pir~~~~~~~~---~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 76 (412)
T d1bw0a_ 1 WDVSMS-NHAGLVFNPIRTVSDNAKP---SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPE 76 (412)
T ss_dssp CCCCCC-HHHHTCCCHHHHHHHTCCC---CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHH
T ss_pred CCCChh-hcccCCccHHHHHHHhcCC---CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHH
Confidence 777888 4456777889988875533 235678999999998765556677889999998887766779999999999
Q ss_pred HHHHHHHHHhhcC------CCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC
Q 014603 92 ARRAIADYLNRDL------PYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165 (422)
Q Consensus 92 lr~~ia~~l~~~~------~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (422)
||+++|+++++.+ +.++++++|++|+|+++++..++++++++||+|++++|+|+.+...++..|.+++.+++++
T Consensus 77 LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~ 156 (412)
T d1bw0a_ 77 AREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRP 156 (412)
T ss_dssp HHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEG
T ss_pred HHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhccCcccccccccc
Confidence 9999999998764 3457889999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc----cc
Q 014603 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG----VF 241 (422)
Q Consensus 166 ~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~----~~ 241 (422)
++++..+++.+++...+.++++++++|+||||.+++.+++++|+++|++++++||+||+|..+.|++....+.. ..
T Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~ 236 (412)
T d1bw0a_ 157 ENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF 236 (412)
T ss_dssp GGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS
T ss_pred ccccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccc
Confidence 88889999999999888999999999999999999999999999999999999999999999998875433322 22
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDI 321 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 321 (422)
....+++++.|+||.|+++|+|+||++++++.... +.++............++...+.++...+....+.++.+.+++
T Consensus 237 ~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (412)
T d1bw0a_ 237 ETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNG--PSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAK 314 (412)
T ss_dssp CCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSC--HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccccccccccccCccCccCCCCcccccccchhhcc--hhhhhhhccccccccCCchhhhhhcccccccccccccccccch
Confidence 33346789999999999999999999997643222 3444444444444445556666666666554456789999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccCh
Q 014603 322 LRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEP 401 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~ 401 (422)
++++++.+.+.|.+.+++. +..|.+|+|+|++++.....+..++.+++.++++++||.+.||..|+.++++|||++.++
T Consensus 315 ~~~~r~~~~~~l~~~~g~~-~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~ 393 (412)
T d1bw0a_ 315 IEESAMYLYNHIGECIGLA-PTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPV 393 (412)
T ss_dssp HHHHHHHHHHHHTTSTTEE-ECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCH
T ss_pred hHHHHHHHHHHHHHhcCce-ecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCCH
Confidence 9999999999999887887 558999999999998655555557888999999989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 014603 402 SALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 402 ~~l~~~~~~l~~~~~~~~ 419 (422)
+++++++++|+++++++.
T Consensus 394 e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 394 EVYREAVERIKAFCQRHA 411 (412)
T ss_dssp HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998874
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.1e-56 Score=417.86 Aligned_cols=390 Identities=27% Similarity=0.484 Sum_probs=325.6
Q ss_pred cccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHH
Q 014603 15 KANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARR 94 (422)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~ 94 (422)
..++|+.+.. ..||++....++ +. .+|.++|+|+.|+|.. ..+++|+.+++++.+.+.++ .++|++..|.++||+
T Consensus 3 ~~s~r~~~~~-~~ir~i~~~a~~-l~-~~G~~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~~~-~~~Y~~~~G~~~LR~ 77 (395)
T d1xi9a_ 3 RASKRALSVE-YAIRDVVLPARE-LE-KKGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRK 77 (395)
T ss_dssp CCCHHHHTCC-C-------CHHH-HH-HTTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHH
T ss_pred cchhccccCc-HHHHHHHHHHHH-HH-HCCCCeEECCCCCCCC-CCCCCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHH
Confidence 4688999985 689999865543 32 3588999999999863 24788999999999998764 468999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHH
Q 014603 95 AIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLD 174 (422)
Q Consensus 95 ~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 174 (422)
++++++++.+|..+++++|++|+|+++++..++.+++.+||+|++++|+|+.+...++..|.+++.++....+++.+|++
T Consensus 78 aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~ 157 (395)
T d1xi9a_ 78 AIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDID 157 (395)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHH
T ss_pred HHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887788999999
Q ss_pred HHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCc
Q 014603 175 AVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSIS 254 (422)
Q Consensus 175 ~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~s 254 (422)
.+++.+.++++++++++||||||.+++.+++++|+++|++++++||.|++|..+.|++... +...+...++++++.|||
T Consensus 158 ~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~vi~~~S~S 236 (395)
T d1xi9a_ 158 DIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI-SPGSLTKDVPVIVMNGLS 236 (395)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC-CHHHHCSSSCEEEEEEST
T ss_pred HHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccccc-chhhcCCCCCEEEEeCcc
Confidence 9999998899999999999999999999999999999999999999999999988865443 333445566899999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
|.|+++|+|+||++++++.... ..+.+...........++.+.|.++..++... +.++++.++.++++++.+.+.|+
T Consensus 237 K~~~~~GlRvG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 313 (395)
T d1xi9a_ 237 KVYFATGWRLGYMYFVDPENKL--SEVREAIDRLARIRLCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLN 313 (395)
T ss_dssp TTTCCGGGCCEEEEEECTTCTT--HHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhcEeeEecCHHHHH--HHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876543222 12222222223344577888999888888753 57899999999999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
+++++. +..|++|+|+|++++... ..++.+++.++++++||.+.||..|+. ++++||+++++++++++++++|+
T Consensus 314 ~~~~~~-~~~p~gg~~~~~~l~~~~---~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~ 389 (395)
T d1xi9a_ 314 EIPGIS-TTKPQGAFYIFPKIEVGP---WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFE 389 (395)
T ss_dssp TSTTEE-CCCCCBSSEECCEECSCS---CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH
T ss_pred hCCCce-ecCCCeeEEEeEECCCCC---CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHH
Confidence 987666 558999999999887431 126778888888999999999999976 78999999999999999999999
Q ss_pred HHHHH
Q 014603 413 AFYDR 417 (422)
Q Consensus 413 ~~~~~ 417 (422)
+++++
T Consensus 390 ~~l~e 394 (395)
T d1xi9a_ 390 KFMKE 394 (395)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.4e-53 Score=395.62 Aligned_cols=373 Identities=25% Similarity=0.397 Sum_probs=319.4
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
+|+|+.+++.+...++.+..++.. . .|.++|||+.|+|+ +++|+.+++++.+.+.++. .+|++..|.+++|++
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~-~-~G~~vI~l~~G~p~----~~~p~~i~~~~~~~~~~~~-~~Y~~~~G~~~lR~a 73 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALI-K-KGEDVINLTAGEPD----FPTPEPVVEEAVRFLQKGE-VKYTDPRGIYELREG 73 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHH-H-TTCCCEECCCSSCS----SCCCHHHHHHHHHHHTTCC-CCCCCTTCCHHHHHH
T ss_pred CchhhhhCCCCHHHHHHHHHHHHH-H-CCCCeEECCCcCCC----CCCCHHHHHHHHHHHhcCC-cCCCCCcCCHHHHHH
Confidence 478999999999988876554432 2 48899999999966 6888999999999887654 589999999999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++.+.++..+++++|++|+|+++++..++++++++||+|++++|+|+.+.......+.....++....+++.++.+.
T Consensus 74 ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (375)
T d1o4sa_ 74 IAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEE 153 (375)
T ss_dssp HHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHH
T ss_pred HHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHH
Confidence 99999988888999999999999999999999999999999999999999999999999999988888877888899999
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
++....++++++++++|+||||.+++.+++++|+++|++|+++||+||+|..+.+++.....+...+..+++++++|+||
T Consensus 154 ~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 233 (375)
T d1o4sa_ 154 VEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSK 233 (375)
T ss_dssp HHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTT
T ss_pred HHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechh
Confidence 99988889999999999999999999999999999999999999999999988876655444444455678999999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.|+++|+|+||++++ ++.++.+...... ........+......++.. .....+.++++++.+.+.|+
T Consensus 234 ~~~l~G~R~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~l~ 301 (375)
T d1o4sa_ 234 SHSMTGWRVGYLISS--------EKVATAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVERLK 301 (375)
T ss_dssp TTTCGGGCCEEEECC--------HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccccccccc--------ccchhhhhhhhccccccccccchhhhhhhcccc----hhhhHHHHHHHHHHHHHHHH
Confidence 999999999999986 3566666655533 3345556666655555432 44556678888899999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKAF 414 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~~ 414 (422)
+. ++. +..|++|+|+|++++. ++.+++.++++++||.+.||..|+.++++||++++++++|++++++|+++
T Consensus 302 ~~-g~~-~~~p~gg~f~~~~~~~-------~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~ 372 (375)
T d1o4sa_ 302 KM-GVK-FVEPEGAFYLFFKVRG-------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDF 372 (375)
T ss_dssp HT-TCC-CCCCSBSSEEEEECSS-------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred hc-Cce-EecCCccEEEEEECCC-------CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence 87 787 5589999999999975 57788888888899999999999999999999999999999999999998
Q ss_pred HH
Q 014603 415 YD 416 (422)
Q Consensus 415 ~~ 416 (422)
++
T Consensus 373 l~ 374 (375)
T d1o4sa_ 373 LN 374 (375)
T ss_dssp HT
T ss_pred hc
Confidence 74
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=2e-52 Score=398.23 Aligned_cols=383 Identities=21% Similarity=0.360 Sum_probs=322.8
Q ss_pred CccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCH
Q 014603 13 GFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGIL 90 (422)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~ 90 (422)
++++++|+++.+++..+++.+...+ .++|||+.|+|+ +++|+.+++++.+.+.+. ..++|++..|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~I~L~~G~Pd----~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~ 69 (418)
T d2r5ea1 1 KFDLPKRYQGSTKSVWVEYIQLAAQ-------YKPLNLGQGFPD----YHAPKYALNALAAAANSPDPLANQYTRGFGHP 69 (418)
T ss_dssp CCCCCGGGTTCCCCHHHHHHHHHHH-------HCCEECSSSCCS----SCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCH
T ss_pred CCchhhhhcCCCCCHHHHHHHHhcC-------CCCEEccCCCCC----CCCCHHHHHHHHHHHhCCCccCcCCCCCCCCH
Confidence 4688999999999998888754432 468999999976 678899999999998764 345799999999
Q ss_pred HHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCC--
Q 014603 91 PARRAIADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAK-- 167 (422)
Q Consensus 91 ~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 167 (422)
+||++||+++.+.+|..+++ ++|++|+|+++|+..++++++++||.|++++|+|+.+...+...|..++.+++.++.
T Consensus 70 ~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~ 149 (418)
T d2r5ea1 70 RLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTG 149 (418)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCS
T ss_pred HHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccc
Confidence 99999999999988888885 799999999999999999999999999999999999999999999999999886543
Q ss_pred ------CcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 168 ------GWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 168 ------~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
.+..+.+.+.+....+++++++++||||||.+++.+++++|+++|+++|++||+||+|..+.+++....++..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~ 229 (418)
T d2r5ea1 150 GTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTL 229 (418)
T ss_dssp SCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCcccccccc
Confidence 25667888888888889999999999999999999999999999999999999999999998877655555444
Q ss_pred C-CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhc------hHH
Q 014603 242 G-SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKT------EEE 313 (422)
Q Consensus 242 ~-~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~------~~~ 313 (422)
. ..++++++.|+||.+++||+|+||++++ +++++.+..... ....++.+.|.++...+... .+.
T Consensus 230 ~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~--------~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 301 (418)
T d2r5ea1 230 PGMWERTITIGSAGKTFSLTGWKIGWAYGP--------EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPEC 301 (418)
T ss_dssp TTTGGGEEEEEEHHHHTTCGGGCCEEEESC--------HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTS
T ss_pred ccccceeeeeecCCccccCCCccccccccc--------chhhhhhhhcccccccccccchhhhccccccccccccccchh
Confidence 3 3467999999999999999999999986 467787776653 34566777787777666431 146
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccc-------ccCCCCHHHHHHHHHHhcCeEEecCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-------LEGINSDMEFALKLAKEESVIVLPGIT 386 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~gi~v~~g~~ 386 (422)
++.+.++.++.+++.+.+.|+++ ++. +..|++|+|+|++++... .....++.+++..+++++||.+.||..
T Consensus 302 ~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~ 379 (418)
T d2r5ea1 302 YFNSISGELMAKRDYMASFLAEV-GMN-PTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSA 379 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCE-EEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGG
T ss_pred hHHHHHHHHHHhhhhHHhhHhhc-CCc-ccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchh
Confidence 78899999999999999999998 777 558999999999986421 011235677888888989999999998
Q ss_pred CCC-------CCeEEEEeccChHHHHHHHHHHHHHHH
Q 014603 387 VGL-------KDWLRITFAVEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 387 ~~~-------~~~iRis~~~~~~~l~~~~~~l~~~~~ 416 (422)
|+. ++++|||++.++++|++++++|++++.
T Consensus 380 F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 380 FYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp GSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred hCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHHc
Confidence 865 478999999899999999999998763
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-51 Score=390.09 Aligned_cols=377 Identities=23% Similarity=0.335 Sum_probs=316.4
Q ss_pred ccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHH
Q 014603 16 ANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRA 95 (422)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ 95 (422)
+|+|+++..++.||++.....+. ..+|.++|+|+.|+|+ +++|+.+.+++.+... ..++|++..|.++||++
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~--~~~g~~vi~l~~G~p~----~~~p~~~~~al~~~~~--~~~~Y~~~~G~~~LR~a 72 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMA--KKRGVRIHHLNIGQPD----LKTPEVFFERIYENKP--EVVYYSHSAGIWELREA 72 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHH--HHTTCEEEECSSCCCC----SCCCTHHHHHHHHTCC--SSCCCCCTTCCHHHHHH
T ss_pred CChhhhcCCCCHHHHHHHHHHHH--HHcCCCEEECCCCCCC----CCCCHHHHHHHHhcCC--CCCCCCCCcCCHHHHHH
Confidence 57899999999999998644332 2358899999999976 6888999999987543 35689999999999999
Q ss_pred HHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 96 IADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 96 ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++++.+.+|+.+++++|++|+|+++++..++.+++++||.|+++.|+|+.+...+...|..++.++....+ +..+.+.
T Consensus 73 ia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~ 151 (389)
T d2gb3a1 73 FASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEE-GFAIPQN 151 (389)
T ss_dssp HHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGG-TSCCCTT
T ss_pred HHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCcccccccccccc-ccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998888875433 3345566
Q ss_pred HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcc
Q 014603 176 VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISK 255 (422)
Q Consensus 176 l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK 255 (422)
+.....++++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.+++....... ...++++++.|+||
T Consensus 152 ~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~--~~~~~~~v~~s~sK 229 (389)
T d2gb3a1 152 LESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS--IESDKVVVIDSVSK 229 (389)
T ss_dssp GGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG--SCCTTEEEEEESTT
T ss_pred hhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccc--cccccccccccccc
Confidence 6777778899999999999999999999999999999999999999999999888765443322 23457889999999
Q ss_pred ccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 256 RWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 256 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
.++++|+|+||+++++ +.+.............++.+.+.++..++.. .+.++++.++.++++++.+.+.|++
T Consensus 230 ~~~~~GlRiG~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~ 301 (389)
T d2gb3a1 230 KFSACGARVGCLITRN-------EELISHAMKLAQGRLAPPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEE 301 (389)
T ss_dssp TTTCGGGCCEEEECSC-------HHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccceeeeeccc-------hhHHHHHhhhhhccccccccccccccccccc-cchhcccccccccccchhhhhhhhh
Confidence 9999999999999864 3455555454444556667777777777763 3688899999999999999999999
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHh-----cCeEEecCCCCCC-----CCeEEEEeccChHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----KDWLRITFAVEPSALE 405 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~v~~g~~~~~-----~~~iRis~~~~~~~l~ 405 (422)
++... +..|++|+|+|++++.. ++.+++..++++ .||.+.||..|+. ++++||+++.++++++
T Consensus 302 ~~~~~-~~~p~~g~~~~~~lp~~------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~ 374 (389)
T d2gb3a1 302 HGLKR-FTKPSGAFYITAELPVE------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLS 374 (389)
T ss_dssp TTCCC-BCCCSBSSEEEEECSSS------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHH
T ss_pred hcccc-ccCCCceEEEEEeCCCC------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHH
Confidence 95555 55899999999999753 677888887765 4789999988764 5799999999999999
Q ss_pred HHHHHHHHHHHHh
Q 014603 406 DGLGRMKAFYDRH 418 (422)
Q Consensus 406 ~~~~~l~~~~~~~ 418 (422)
+++++|+++++++
T Consensus 375 ~a~~~L~~~lk~f 387 (389)
T d2gb3a1 375 RAIDVLMEGLKMF 387 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-51 Score=391.32 Aligned_cols=378 Identities=21% Similarity=0.389 Sum_probs=318.4
Q ss_pred cHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC-CCCCCCCCCCCHHHHHH
Q 014603 17 NEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA-RFNCYSSTVGILPARRA 95 (422)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~ 95 (422)
++|+.+.+.+...+..+.. .++++|||+.|.|+ +++|+.+.+++.+.+.++ ..++|++..|.++||++
T Consensus 4 ~~r~~~~~~~~~~~~~~~~-------~~~dvI~l~~G~p~----~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LRea 72 (418)
T d1w7la_ 4 ARRLDGIDYNPWVEFVKLA-------SEHDVVNLGQGFPD----FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKI 72 (418)
T ss_dssp CGGGTTCCCCTHHHHHHHH-------HTSCCEECCCCSCS----SCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHH
T ss_pred CccccCCCCCHHHHHHHHh-------CCCCCEECCCCCCC----CCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHH
Confidence 5688888888887776422 46789999999976 688899999999998764 34579999999999999
Q ss_pred HHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCC--------
Q 014603 96 IADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPA-------- 166 (422)
Q Consensus 96 ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------- 166 (422)
+++++++.+|..+++ ++|++|+|+++++..++++++++||.|++++|+|+.|...+...|.+++.++..+.
T Consensus 73 ia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~ 152 (418)
T d1w7la_ 73 LASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELG 152 (418)
T ss_dssp HHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSE
T ss_pred HHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccc
Confidence 999999888888875 68999999999999999999999999999999999999999999999888876542
Q ss_pred --CCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-
Q 014603 167 --KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS- 243 (422)
Q Consensus 167 --~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~- 243 (422)
.++.+|.+++.....+.++++++++|+||||.+++.+++++|+++|++++++||+||+|..+.|++....++..+..
T Consensus 153 ~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~ 232 (418)
T d1w7la_ 153 SSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM 232 (418)
T ss_dssp EGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT
T ss_pred cccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccc
Confidence 34567778888877888999999999999999999999999999999999999999999999998876666666543
Q ss_pred CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch------HHHHH
Q 014603 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE------EEFFS 316 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~------~~~~~ 316 (422)
.++++++.|+||.|++||+|+||++++ ++++..+..... ...+++.+.|.++..++.... ..++.
T Consensus 233 ~~~~i~~~S~SK~~~~pG~RvG~~v~~--------~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 304 (418)
T d1w7la_ 233 WERTLTIGSAGKTFSATGWKVGWVLGP--------DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFV 304 (418)
T ss_dssp GGGEEEEEEHHHHTTCGGGCCEEEECC--------HHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHH
T ss_pred ccccceecccCccccCCCCcccccccc--------hhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccc
Confidence 357999999999999999999999996 467888877664 345777888888888876422 35678
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccc--------cCCCCHHHHHHHHHHhcCeEEecCCCCC
Q 014603 317 KITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL--------EGINSDMEFALKLAKEESVIVLPGITVG 388 (422)
Q Consensus 317 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 388 (422)
..++.++++++.+.+.|+++ ++. +..|++|+|+|++++.... .+...+.+++.++++++||.|.||+.|+
T Consensus 305 ~~~~~~~~~r~~l~~~L~~~-g~~-~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~ 382 (418)
T d1w7la_ 305 QFPQAMQRCRDHMIRSLQSV-GLK-PLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFY 382 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCE-EEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGS
T ss_pred cchhhhhhhhhhhhhhhhhc-CCc-ccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhc
Confidence 88899999999999999998 777 5589999999999864211 1112367788899999999999999886
Q ss_pred C-------CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 389 L-------KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 389 ~-------~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
. .++||||++.+++++++++++|++..
T Consensus 383 ~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 383 SVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 416 (418)
T ss_dssp CHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCCEEEEEEcCCHHHHHHHHHHHHHHh
Confidence 4 57999999989999999999998753
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=5.9e-51 Score=386.71 Aligned_cols=383 Identities=21% Similarity=0.314 Sum_probs=312.0
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILP 91 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~ 91 (422)
..+|++++.++.+.||++++.. +.+++|||+.|.|+. ...+.+.+.+++.+.+... ...+|++..|.++
T Consensus 5 ~~~~~~~~~~~~s~ire~~~~~-------~~~~~i~l~~G~P~~--~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 75 (403)
T d1wsta1 5 SFFSEKAMLMKASEVRELLKLV-------ETSDVISLAGGLPAP--ETFPVETIKKIAVEVLEEHADKALQYGTTKGFTP 75 (403)
T ss_dssp GGCCHHHHHCCCHHHHHHHHHH-------TSSSCEECCCCCCCG--GGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHh-------CCCCcEECCCCCCCc--cccCHHHHHHHHHHHHHhCcccccCCCCCcCCHH
Confidence 4578999999999999998644 567899999999873 2334577888888776542 2357999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCccc
Q 014603 92 ARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEV 171 (422)
Q Consensus 92 lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (422)
||+++|+++++.+|.++++++|++|+|+++++..++++++++||.|++++|+|+.+...+...|.+++.++.+....+..
T Consensus 76 lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 155 (403)
T d1wsta1 76 LRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVD 155 (403)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHH
T ss_pred HHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999998865432222
Q ss_pred CHHHHH-H---hhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCe
Q 014603 172 DLDAVE-A---LADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPV 247 (422)
Q Consensus 172 d~~~l~-~---~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (422)
...... . ..++...++++++|+||||.+++.+++++|+++|++||++||+||+|..+.+++....++...+..+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~ 235 (403)
T d1wsta1 156 LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRV 235 (403)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCE
T ss_pred cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcE
Confidence 222111 1 223355677888999999999999999999999999999999999999999988777777777767789
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKITDILRET 325 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~ 325 (422)
++++|+||.+ ++|+|+||++++ +++++.+..... ....++...|.+...++.... +.++.+.++.++++
T Consensus 236 i~~~S~SK~~-~~G~RiG~~i~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (403)
T d1wsta1 236 IYLGTFSKIL-APGFRIGWVAAH--------PHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPR 306 (403)
T ss_dssp EEEEESTTTT-CGGGCCEEEEEC--------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred EEEcccccee-cCcccccccccc--------hHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHH
Confidence 9999999997 599999999996 467777766553 345667777777777766533 67788888999999
Q ss_pred HHHHHHHhhcC--CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEec-
Q 014603 326 ADICCDRLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFA- 398 (422)
Q Consensus 326 ~~~l~~~L~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~- 398 (422)
++.+.+.|.+. .++. +..|.+|+|+|++++... +...+...+ .++||.+.||+.|+. ++++||+++
T Consensus 307 ~~~~~~~L~~~~~~~~~-~~~p~gg~~~~~~~~~~~-----~~~~~~~~l-~~~gV~v~pg~~f~~~~~~~~~iRi~~~~ 379 (403)
T d1wsta1 307 RDAMLEALEEYMPEGVE-WTKPEGGMFVRVTLPEGI-----DTKLMMERA-VAKGVAYVPGEAFFVHRDKKNTMRLNFTY 379 (403)
T ss_dssp HHHHHHHHHHHCCTTCE-ECCCSBSSEEEEECCTTC-----CTTTTHHHH-HHTTEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHHHHHHHhhccCCeE-EeCCCceeEEEEECCCCC-----CHHHHHHHH-HHCCEEEEechhhcCCCCCCCEEEEEecC
Confidence 99999999874 3455 557999999999998642 344555554 567999999988864 579999998
Q ss_pred cChHHHHHHHHHHHHHHHHhccc
Q 014603 399 VEPSALEDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 399 ~~~~~l~~~~~~l~~~~~~~~~~ 421 (422)
.+++++++++++|++++++..++
T Consensus 380 ~~~~~l~~al~rl~~~l~~~~k~ 402 (403)
T d1wsta1 380 VPEETIREGVRRLAETIKEEMKR 402 (403)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999987664
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1.7e-50 Score=381.91 Aligned_cols=358 Identities=16% Similarity=0.253 Sum_probs=295.6
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.|.++|+|+.|+|+ +++|+.+++++.+.++++ .++|+ .+.++||+++++++++.+|+.+++++|++|+|++++
T Consensus 29 ~g~~vi~l~~g~pd----f~~p~~v~~al~~~~~~~-~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~a 101 (394)
T d1c7na_ 29 VGNEVVPLSVADME----FKNPPELIEGLKKYLDET-VLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPA 101 (394)
T ss_dssp CCTTCCCCCSSSCS----SCCCHHHHHHHHHHHHHC-CCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred cCCCeEEccCCCCC----CCCCHHHHHHHHHHHhCC-CcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhh
Confidence 57899999999965 899999999999988764 44775 367999999999999988999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC-CCCcccCHHHHHHhh-cCCceEEEEeCCCCCccccc
Q 014603 123 IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKGWEVDLDAVEALA-DENTVALVIINPGNPCGNVY 200 (422)
Q Consensus 123 ~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~-~~~~~~i~i~~p~nptG~~~ 200 (422)
+..++++++++||.|+++.|.|.++.......|...+.++... +..+.+|.+.++... .++++++++++||||||.++
T Consensus 102 l~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~ 181 (394)
T d1c7na_ 102 VFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVW 181 (394)
T ss_dssp HHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCC
T ss_pred hhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceec
Confidence 9999999999999999999999999999999998888777643 344667888888765 45789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC--CCCCeEEEecCccccCCCCceeEEEEeeCCCCcccc
Q 014603 201 TYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG--SIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQD 278 (422)
Q Consensus 201 ~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~--~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 278 (422)
+.+++++|+++|++++++||+||+|..+.|++....+..... ..++++++.|+||.|+++|+|+||+++++
T Consensus 182 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~------- 254 (394)
T d1c7na_ 182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN------- 254 (394)
T ss_dssp CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC-------
T ss_pred cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccC-------
Confidence 999999999999999999999999999988775544433222 23578999999999999999999999875
Q ss_pred hhHHHHHHhhhhhcc-CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecC
Q 014603 279 SGIVDSIKSFLNISS-DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLN 356 (422)
Q Consensus 279 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~ 356 (422)
+.+.+.+........ .+....+.++........+.+.++.++.++++++.+.+.++. .+++. ...|++++|+|++++
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~g~~~~~~~~~ 333 (394)
T d1c7na_ 255 PDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK-APLIEGTYLQWIDFR 333 (394)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSB-CCCCSBSSEEEEECG
T ss_pred hhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhcccccee-ecCCCceeEEEEECC
Confidence 456677766654332 333333333333333233678888888899999999888875 45776 447899999999987
Q ss_pred cccccCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 357 YSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
... .++.++...|+++.||.+.||..|+. ++++|||+++++++|++++++|++++++++
T Consensus 334 ~~~----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 334 ALK----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp GGC----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCC----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 521 26788888898888999999999976 679999999999999999999999998864
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-49 Score=374.66 Aligned_cols=368 Identities=24% Similarity=0.368 Sum_probs=309.8
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIAD 98 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~ 98 (422)
|+.....+-+.++.. +. ++.++|||+.|.|+ +++|+.+++++.+.+.++ .++|++..|.++||+++|+
T Consensus 7 ~~~~~~~~~~~~~~~-~a------~~~~~i~l~~G~Pd----~~~p~~i~~a~~~~~~~~-~~~Y~~~~G~~~LReaia~ 74 (382)
T d1u08a_ 7 KLPQLGTTIFTQMSA-LA------QQHQAINLSQGFPD----FDGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQ 74 (382)
T ss_dssp SCCCCCCCHHHHHHH-HH------HHTTCEECCCSSCS----SCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHH
T ss_pred hCCCCCCcHHHHHHH-Hh------ccCCCEEccCCCCC----CCCCHHHHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHH
Confidence 444444433444443 32 34688999999976 688899999999988764 5689999999999999999
Q ss_pred HHhhcCCCCCCCC-CEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHH
Q 014603 99 YLNRDLPYKLSPD-DVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVE 177 (422)
Q Consensus 99 ~l~~~~~~~~~~~-~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 177 (422)
++++.+|..++++ +|++|+|+++++..++++++++||.|++++|+|+.+...+...|.....++.. .+++..|+++++
T Consensus 75 ~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~ 153 (382)
T d1u08a_ 75 KTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFA 153 (382)
T ss_dssp HHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECC-TTTCCCCHHHHH
T ss_pred HHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhccccceecccc-cccccCCHHHHh
Confidence 9999888888776 59999999999999999999999999999999999999999999887777764 456778999999
Q ss_pred HhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc-CCCCCeEEEecCccc
Q 014603 178 ALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF-GSIVPVLTLGSISKR 256 (422)
Q Consensus 178 ~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~ 256 (422)
+...++++++++++|+||||.+++.+++++|+++|++++++++.|++|..+.+.+......... ...++++++.|+||.
T Consensus 154 ~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 233 (382)
T d1u08a_ 154 ALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT 233 (382)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHH
T ss_pred hhhccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeecccc
Confidence 9999999999999999999999999999999999999999999999999877765443333222 234578999999999
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
++.+|+|+||++++ +++++.+..... ...+++.+.|.++..+++.. +.++.+.++.++++++.+.+.++.
T Consensus 234 ~~~pG~RiG~~v~~--------~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 304 (382)
T d1u08a_ 234 YHMTGWKVGYCVAP--------APISAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNE 304 (382)
T ss_dssp TTCGGGCCEEEECC--------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTS
T ss_pred ccCCcccchhhhcc--------chhHHHHHhhhcccccccccccccccccccccc-hHHHHHHHHHHHhhhhhhhhhhcc
Confidence 99999999999986 467777766653 34678889999999999864 478889999999999999999877
Q ss_pred CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEeccChHHHHHHHHHH
Q 014603 336 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALEDGLGRM 411 (422)
Q Consensus 336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~~~~~~l~~~~~~l 411 (422)
. ++. +..|++|+|+|++++.. +..++.++..++++++||.+.||..|+. .+++|||++.++++|+++++||
T Consensus 305 ~-g~~-~~~p~gg~~~~~~~~~~---~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL 379 (382)
T d1u08a_ 305 S-RLE-ILPCEGTYFLLVDYSAV---STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERL 379 (382)
T ss_dssp S-SCE-ECCCCBSSEEEEECTTT---CCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHH
T ss_pred C-CcE-EecCCceEEEEEecCCC---CCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHH
Confidence 6 777 45899999999999753 1236888899998999999999999864 4689999998899999999998
Q ss_pred HH
Q 014603 412 KA 413 (422)
Q Consensus 412 ~~ 413 (422)
++
T Consensus 380 ~~ 381 (382)
T d1u08a_ 380 RQ 381 (382)
T ss_dssp TT
T ss_pred hC
Confidence 75
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-50 Score=383.61 Aligned_cols=381 Identities=19% Similarity=0.269 Sum_probs=307.5
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC--CCCCCCCCCCCHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA--RFNCYSSTVGILP 91 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~y~~~~g~~~ 91 (422)
..+|++.+.+.++.||++++.. +++++|+|+.|.|+. ...+.+.+.+++.+.++.. ...+|++..|.++
T Consensus 14 ~~~s~~~~~~~~s~ir~~~~~~-------~~~~~I~l~~G~Pd~--~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 84 (420)
T d1vp4a_ 14 GKISKIGQNMKSSIIREILKFA-------ADKDAISFGGGVPDP--ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPV 84 (420)
T ss_dssp HHCCHHHHTCCCCCHHHHTTTT-------TSTTCEECCCCSCCG--GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHH
T ss_pred HHHhHHHHhCCCcHHHHHHHHh-------CCCCcEecCCcCCCC--ccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHH
Confidence 3578888999999999987632 578999999998762 2334567777777766543 2358999999999
Q ss_pred HHHHHHHHHhhcCCCC-CCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcc
Q 014603 92 ARRAIADYLNRDLPYK-LSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWE 170 (422)
Q Consensus 92 lr~~ia~~l~~~~~~~-~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (422)
||++||+++++.+|.. +++++|++|+|+++++..++.+++++||.|++++|+|..+...++..|..++.++.++. +
T Consensus 85 LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~---~ 161 (420)
T d1vp4a_ 85 LKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---G 161 (420)
T ss_dssp HHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---E
T ss_pred HHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhccccccccc---c
Confidence 9999999999988875 78999999999999999999999999999999999999999999999999999987543 4
Q ss_pred cCHHHHHHhh---------cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc
Q 014603 171 VDLDAVEALA---------DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF 241 (422)
Q Consensus 171 ~d~~~l~~~~---------~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~ 241 (422)
++++.++..+ .+.+.++++++|+||||.+++.+++++|+++|+++++++|+||+|..+.|++....+....
T Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~ 241 (420)
T d1vp4a_ 162 MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI 241 (420)
T ss_dssp ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHH
T ss_pred cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccc
Confidence 6776654422 1223455678999999999999999999999999999999999999999887665555555
Q ss_pred CCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHHHH
Q 014603 242 GSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIT 319 (422)
Q Consensus 242 ~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~ 319 (422)
...+++++++|+||++ ++|+|+||++++ +++++++..... ...+++...|.++..++.... ..++.+.+
T Consensus 242 ~~~~~~i~~~s~sk~~-~~G~RiG~~~~~--------~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~ 312 (420)
T d1vp4a_ 242 GGPERVVLLNTFSKVL-APGLRIGMVAGS--------KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTI 312 (420)
T ss_dssp HCTTTEEEEEESTTTT-CGGGCEEEEECC--------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHH
T ss_pred ccccceeEEecccccc-cccccccccccc--------chhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHH
Confidence 5567789999999985 799999999986 578888877664 345667788888888777543 55667777
Q ss_pred HHHHHHHHHHHHHhhc----CCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CC
Q 014603 320 DILRETADICCDRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KD 391 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~ 391 (422)
+.++++++.+.+.|++ ++++. +..|.+|+|+|++++.. .++.++... +++.||.+.||..|+. .+
T Consensus 313 ~~~~~~~~~~~~~L~~~~~~~~g~~-~~~p~gg~f~~~~~~~~-----~d~~~~~~~-l~~~gV~v~PG~~F~~~~~~~~ 385 (420)
T d1vp4a_ 313 ELYRRKRTVMLNALEEYFSDIPGVK-WVKSEGGLFIWLTLPEG-----FDTWEMFEY-AKRKKVFYVPGRVFKVYDEPSP 385 (420)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSTTCE-ECCCSBSSEEEEECCTT-----CCTTTTHHH-HHHHTEECEEGGGGCTTCCCCS
T ss_pred HHhhhhcccchhhhhhhhccCCCcE-EecCCceEEEEEECCCC-----CCHHHHHHH-HHHCCeEEEechhhCCCCCCCC
Confidence 7777777777777664 56777 55899999999999753 144555554 4677999999998875 46
Q ss_pred eEEEEec-cChHHHHHHHHHHHHHHHHhcccC
Q 014603 392 WLRITFA-VEPSALEDGLGRMKAFYDRHAKKQ 422 (422)
Q Consensus 392 ~iRis~~-~~~~~l~~~~~~l~~~~~~~~~~~ 422 (422)
++|||++ .+++++++++++|+++++++.+++
T Consensus 386 ~iRls~~~~~~e~l~~a~~rL~~~l~~~~~~~ 417 (420)
T d1vp4a_ 386 SMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 417 (420)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCcCCHHHHHHHHHHHHHHHHHhhHhh
Confidence 9999998 678999999999999999998764
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-49 Score=368.17 Aligned_cols=353 Identities=19% Similarity=0.308 Sum_probs=290.1
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~ 126 (422)
+|+|++|+|+ |++|+.+++++.+.+.++. .+|++..| +++|+++++++.+.+|.++++++|++|+|+++++..+
T Consensus 1 ~~~~~~~~~d----f~~p~~i~eal~~~~~~~~-~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~ 74 (361)
T d1d2fa_ 1 LLPFTISDMD----FATAPCIIEALNQRLMHGV-FGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSEL 74 (361)
T ss_dssp CEECCSSSCS----SCCCHHHHHHHHHHHTTCC-CCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHH
T ss_pred CcCcCCCCCC----CCCCHHHHHHHHHHHhCCC-CCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHH
Confidence 5899999976 8999999999999887654 47988777 7899999999999999999999999999999999999
Q ss_pred HHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC-CCCcccCHHHHHHhhc-CCceEEEEeCCCCCcccccCHHH
Q 014603 127 LTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKGWEVDLDAVEALAD-ENTVALVIINPGNPCGNVYTYQH 204 (422)
Q Consensus 127 ~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~~-~~~~~i~i~~p~nptG~~~~~~~ 204 (422)
+++++++||+|++++|+|.++...++..|..++.++... .+++.+|++.+++.+. ++++++++++|+||||.+++.++
T Consensus 75 ~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~ 154 (361)
T d1d2fa_ 75 IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDE 154 (361)
T ss_dssp HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTH
T ss_pred hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhh
Confidence 999999999999999999999999999999998888754 3456789999998874 47889999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHH
Q 014603 205 LQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDS 284 (422)
Q Consensus 205 l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~ 284 (422)
+++|+++|+++|++||+||+|..+.|++....++..... ++++++.|+||.++++|+|+||++.++ +.....
T Consensus 155 ~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~-~~~v~~~s~SK~~~~~g~R~g~~~~~~-------~~~~~~ 226 (361)
T d1d2fa_ 155 LEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR-GDWALLTSGSKSFNIPALTGAYGIIEN-------SSSRDA 226 (361)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC-SSEEEEECSHHHHTCGGGCCEEEEECS-------HHHHHH
T ss_pred hhhhhhhhhhhheeeeecccccccccccccccccccccc-cccccccccccccccccccceeeecch-------hHHHHH
Confidence 999999999999999999999999887766555555443 568999999999999999999998764 223232
Q ss_pred H-Hhhhhhc--cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCceEEEEecCcccc
Q 014603 285 I-KSFLNIS--SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLL 360 (422)
Q Consensus 285 ~-~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (422)
. ....... ++++...+.+...++.. ...+.++.+..++++++.+.+.+.+ .+++. +..|++|+|+|++++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~p~gg~~~~~~l~~~~- 303 (361)
T d1d2fa_ 227 YLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELN-WQIPQSTYLAWLDLRPLN- 303 (361)
T ss_dssp HHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-CCCCSBCSEEEEECGGGC-
T ss_pred HhhhcccccccccchhhhHHHHHHHhhc-cchhhhcccccchhhHHHHHHHhhhhccccc-ccccCceeEEEEEccCCC-
Confidence 2 2222222 23333444444444442 3567778888888888888777665 45666 557899999999885321
Q ss_pred cCCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 361 EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 361 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.++.+++.++++++||.+.||..|+. ++++|||++++++++++++++|.+++++++
T Consensus 304 ---~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 304 ---IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp ---CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 26888999998999999999999875 578999999889999999999999998864
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-48 Score=366.46 Aligned_cols=361 Identities=26% Similarity=0.413 Sum_probs=298.8
Q ss_pred ccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHH
Q 014603 14 FKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPAR 93 (422)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr 93 (422)
++++.|++.+..+-+..+ ..+.+. .++|||+.|.|+ +++|+.+++++.+.+.+ .++|++..|.++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~la~~------~~~I~ls~g~p~----~~~p~~i~~al~~~l~~--~~~Y~~~~G~~elr 67 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRM-SGLAQR------LGAVNLGQGFPS----NPPPPFLLEAVRRALGR--QDQYAPPAGLPALR 67 (368)
T ss_dssp CCCCGGGGGC---CHHHH-HHHHHH------HTCEECCCCSCS----SCCCHHHHHHHHHHTTT--SCSCCCTTCCHHHH
T ss_pred CCCChhhhhcCCCHHHHH-HHHhcc------CCCEEecCCCCC----CCCCHHHHHHHHHHhhc--ccCCCCCcCCHHHH
Confidence 467888888886444444 344432 458999999965 68899999999998864 46899999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC-CCCcccC
Q 014603 94 RAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKGWEVD 172 (422)
Q Consensus 94 ~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d 172 (422)
++||+++ ++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+...|.+++.++++. .+.+.+|
T Consensus 68 ~aiA~~~------~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d 141 (368)
T d1v2da_ 68 EALAEEF------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLD 141 (368)
T ss_dssp HHHHHHH------TSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECC
T ss_pred HHHHhhc------ccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCC
Confidence 9999999 57899999999999999999999999999999999999999999999999998888753 3457899
Q ss_pred HHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEec
Q 014603 173 LDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGS 252 (422)
Q Consensus 173 ~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s 252 (422)
++.+++.++++++.+++++|+||||.+++.+++++|+++|++||+++|+|++|..+.+....... .....++.+++.|
T Consensus 142 ~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 219 (368)
T d1v2da_ 142 LSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRL--REFAPERTFTVGS 219 (368)
T ss_dssp HHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCH--HHHCTTTEEEEEE
T ss_pred HHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccc--ccccccccceeec
Confidence 99999999999999999999999999999999999999999999999999999876554433222 2223356788899
Q ss_pred CccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 014603 253 ISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICC 330 (422)
Q Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 330 (422)
+||.++++|+|+||++.++ ++.+.+..... ...+++.+.|.++..++.... ..+++..++.++++++.+.
T Consensus 220 ~sk~~~~~G~R~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 291 (368)
T d1v2da_ 220 AGKRLEATGYRVGWIVGPK--------EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLA 291 (368)
T ss_dssp HHHHTTCGGGCCEEEECCT--------TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccc--------cccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhh
Confidence 9999999999999999863 56777766653 345777888888888887543 4578888899999999999
Q ss_pred HHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC----CCeEEEEeccChHHHHH
Q 014603 331 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALED 406 (422)
Q Consensus 331 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~----~~~iRis~~~~~~~l~~ 406 (422)
+.|+++ ++. +..|++++|+|++++.. +.. ++++++||.+.||..|+. ++++|||++++++++++
T Consensus 292 ~~l~~~-g~~-~~~p~g~~~~~~~l~~~------~~~----~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ 359 (368)
T d1v2da_ 292 GGLRAM-GLR-VYVPEGTYFLMAELPGW------DAF----RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHL 359 (368)
T ss_dssp HHHHHT-TCC-EECCSBSSEEEEECTTC------CHH----HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHH
T ss_pred hhHHhc-CcE-EecCCceeEEEEeCCcc------HHH----HHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHH
Confidence 999998 787 55888899999998742 333 356788999999998864 58999999988999999
Q ss_pred HHHHHHHHH
Q 014603 407 GLGRMKAFY 415 (422)
Q Consensus 407 ~~~~l~~~~ 415 (422)
++++|++++
T Consensus 360 ai~rL~~~l 368 (368)
T d1v2da_ 360 ALERLGRVV 368 (368)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999864
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=8.3e-48 Score=366.98 Aligned_cols=362 Identities=20% Similarity=0.356 Sum_probs=288.6
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC----------CCCCCCCCCCCHHHHHHHHHHHhhcCCC--CCC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA----------RFNCYSSTVGILPARRAIADYLNRDLPY--KLS 109 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~----------~~~~y~~~~g~~~lr~~ia~~l~~~~~~--~~~ 109 (422)
.++.++|+|+.+... ..++.+.+.+.+..... ....|++..|.++||++||+|+++.+|. .++
T Consensus 33 ~np~G~i~l~~aen~-----l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~ 107 (428)
T d1iaya_ 33 KNPNGVIQMGLAENQ-----LCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD 107 (428)
T ss_dssp SSTTSBEECSSCCCC-----SSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC
T ss_pred CCCCceEEeecccCc-----cchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCC
Confidence 446779999999733 45566666665532211 1237999999999999999999988774 467
Q ss_pred CCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhh-CCCeEEEeeccCCCCcccCHHHHHHh------hcC
Q 014603 110 PDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATH-SHLEVRHFDLLPAKGWEVDLDAVEAL------ADE 182 (422)
Q Consensus 110 ~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~------~~~ 182 (422)
+++|++|+|+++++..++.+++++||+|++++|+|..+...+.. .|++++.++.+..+++.+|++.++.. ...
T Consensus 108 ~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~ 187 (428)
T d1iaya_ 108 PERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNI 187 (428)
T ss_dssp TTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred hhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCC
Confidence 89999999999999999999999999999999999998877764 58899999988888899999887653 244
Q ss_pred CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcccc--------CCCCCeEEEecCc
Q 014603 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVF--------GSIVPVLTLGSIS 254 (422)
Q Consensus 183 ~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~s~s 254 (422)
+++++++++|+||||.+++.+++++|+++|++||++||+||+|..+.|++..+.++..+ ...++++++.|+|
T Consensus 188 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~S 267 (428)
T d1iaya_ 188 KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLS 267 (428)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEEST
T ss_pred CceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCC
Confidence 67889999999999999999999999999999999999999999999887665554322 2335789999999
Q ss_pred cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHH
Q 014603 255 KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADICCDR 332 (422)
Q Consensus 255 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~ 332 (422)
|.|+++|+|+||+++++ +.+.+.+...... ...+...+.++.+.+.... +.++++.++.++++++.+.+.
T Consensus 268 K~~~~~GlRiG~~~~~~-------~~l~~~~~~~~~~-~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~ 339 (428)
T d1iaya_ 268 KDMGLPGFRVGIIYSFN-------DDVVNCARKMSSF-GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNG 339 (428)
T ss_dssp TTSSCGGGCEEEEEESC-------HHHHHHHHHHHTT-SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCcccccccccc-------cchhhhhhhhhcc-cccccccccchhhhhhhhccccccccccccccchhHHHHHHH
Confidence 99999999999999853 4566665554443 3555666666666665422 567888888999999999999
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcccccC-CCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHHHHH
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYSLLEG-INSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALEDGL 408 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~~~~ 408 (422)
|+.. |+. +..|.+|+|+|++++...... ..++.++...+++++||.+.||..|+. ++++|||++ .++++|++++
T Consensus 340 L~~~-gi~-~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al 417 (428)
T d1iaya_ 340 LEVV-GIK-CLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIAL 417 (428)
T ss_dssp HHHT-TCC-BCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHH
T ss_pred HHhC-CCE-EecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHH
Confidence 9876 888 558999999999987532211 113456778888889999999999876 689999998 5677899999
Q ss_pred HHHHHHHHHh
Q 014603 409 GRMKAFYDRH 418 (422)
Q Consensus 409 ~~l~~~~~~~ 418 (422)
+||++++...
T Consensus 418 ~Rl~~~l~~~ 427 (428)
T d1iaya_ 418 ARIRRFVGVE 427 (428)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhc
Confidence 9999998653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=1.6e-48 Score=372.27 Aligned_cols=362 Identities=21% Similarity=0.353 Sum_probs=287.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhC-----------CCCCCCCCCCCCHHHHHHHHHHHhhcCC--CCC
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRS-----------ARFNCYSSTVGILPARRAIADYLNRDLP--YKL 108 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~ 108 (422)
.++.++|+|+.+... ...+.+.+.+.+.... .....|++..|.++||+++|+++++.+| +.+
T Consensus 33 ~np~G~i~l~~~en~-----l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~ 107 (431)
T d1m7ya_ 33 HNTNGIIQMGLAENQ-----LCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTF 107 (431)
T ss_dssp SCTTSBEECSSCCCC-----SCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCC
T ss_pred CCCCcEEEeeccccc-----ccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCC
Confidence 345669999998733 3446666665542110 0123699999999999999999998776 456
Q ss_pred CCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhh-CCCeEEEeeccCCCCcccCHHHHHHhhc------
Q 014603 109 SPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARATH-SHLEVRHFDLLPAKGWEVDLDAVEALAD------ 181 (422)
Q Consensus 109 ~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~d~~~l~~~~~------ 181 (422)
++++|++|+|+++++..++.++++|||+|++++|+|..+...+.. .|++++.++.+.++++.+|++.+++.+.
T Consensus 108 ~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~ 187 (431)
T d1m7ya_ 108 DPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRN 187 (431)
T ss_dssp CGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTT
T ss_pred CcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhcc
Confidence 789999999999999999999999999999999999988877764 5788899998877788899998877553
Q ss_pred CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccC----------CCCCeEEEe
Q 014603 182 ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFG----------SIVPVLTLG 251 (422)
Q Consensus 182 ~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~----------~~~~~i~i~ 251 (422)
.+++++++++|+||||.+++.+++++|+++|+++|++||+||+|..+.|++..+.++..+. ..++++++.
T Consensus 188 ~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~ 267 (431)
T d1m7ya_ 188 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY 267 (431)
T ss_dssp CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEE
T ss_pred CcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEe
Confidence 3678899999999999999999999999999999999999999999998876554433221 224689999
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE--EEFFSKITDILRETADIC 329 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l 329 (422)
|+||.|+++|+|+||+++++ +++.............+...+.++.+.+.... +.++.+.+++++++++.+
T Consensus 268 s~SK~~~~~G~RiG~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l 339 (431)
T d1m7ya_ 268 SLSKDLGLPGFRVGAIYSND--------DMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKL 339 (431)
T ss_dssp ESSSSSCCGGGCEEEEEESC--------HHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCCccceeccch--------hhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhh
Confidence 99999999999999999863 34433333333334555666666666665422 568888999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCccccc-CCCCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEec-cChHHHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFA-VEPSALE 405 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~l~ 405 (422)
.+.|++. ++. +..|.+|+|+|++++..... ...++.+++.++++++||.+.||..|+. ++|+|||++ .++++|+
T Consensus 340 ~~~L~~~-gi~-~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~ 417 (431)
T d1m7ya_ 340 VSGLQKS-GIS-CLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLD 417 (431)
T ss_dssp HHHHHTT-TCE-ECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHH
T ss_pred hhhhhcC-CcE-EecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHH
Confidence 9999986 888 55889999999998753221 1123456788888899999999999876 689999998 5778999
Q ss_pred HHHHHHHHHHHHh
Q 014603 406 DGLGRMKAFYDRH 418 (422)
Q Consensus 406 ~~~~~l~~~~~~~ 418 (422)
+++++|+++++++
T Consensus 418 ~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 418 LAMQRLKAFVGEY 430 (431)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=2.5e-46 Score=353.93 Aligned_cols=371 Identities=16% Similarity=0.126 Sum_probs=292.3
Q ss_pred CCcCccccHHHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCC
Q 014603 10 NQWGFKANEELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVG 88 (422)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g 88 (422)
+||+. .+...+++.|+++.+.+++. ..++.|||++|.+.+ ....+..+.|++++.+.+.++....|.+..|
T Consensus 1 ~~~~~----~~~~~p~d~i~~~~~~~~~d----~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G 72 (401)
T d7aata_ 1 SSWWS----HVEMGPPDPILGVTEAFKRD----TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAG 72 (401)
T ss_dssp CCSST----TCCCCCCCHHHHHHHHHHHC----CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTC
T ss_pred CCccc----cCCCCCCChHHHHHHHHhCC----CCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCC
Confidence 45665 35577788999999877764 346689999995321 2334567899999988887766558999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCEEEecCH-----HHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeec
Q 014603 89 ILPARRAIADYLNRDLPYKLSPDDVYLTLGC-----TQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDL 163 (422)
Q Consensus 89 ~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~-----~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (422)
+++||+++++++.+.++..+.++.|+.+.++ ..++..++++++++||+|++++|+|+.|...++..|.+++.+++
T Consensus 73 ~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~ 152 (401)
T d7aata_ 73 LADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRY 152 (401)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEec
Confidence 9999999999999877766777888766443 24677778889999999999999999999999999999999999
Q ss_pred cCCCCcccCHHHHHHhh---cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc-
Q 014603 164 LPAKGWEVDLDAVEALA---DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG- 239 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~---~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~- 239 (422)
.+++++..+.+.+.+.+ .++++++++++||||||.+++.+++++|+++|++|+++||+||+|..+.|++.......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 232 (401)
T d7aata_ 153 YDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWAL 232 (401)
T ss_dssp EETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred cccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhh
Confidence 88788888998887765 35788999999999999999999999999999999999999999999988764222211
Q ss_pred --ccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhh
Q 014603 240 --VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEK 309 (422)
Q Consensus 240 --~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~ 309 (422)
.....++++++.|+||.++++|+|+||++++.. +.+..... .....+++.+.|.++..++.+
T Consensus 233 ~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 304 (401)
T d7aata_ 233 RHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR--------DAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNT 304 (401)
T ss_dssp HHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS--------SHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC
T ss_pred hhhhhhhcccceeEeccccceeeccccceeecchH--------HHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCC
Confidence 112334578889999999999999999999753 22222221 122346677888888888775
Q ss_pred ch-----HHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEE
Q 014603 310 TE-----EEFFSKITDILRETADICCDRLKEIPC---ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 381 (422)
Q Consensus 310 ~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v 381 (422)
.. ..+++..+++++++++.+.+.|+++.. +. +..|.+|+|+|+.++ .+++++|++++||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~G~F~~~~ls----------~e~~~~L~~e~gV~~ 373 (401)
T d7aata_ 305 PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQ-HITDQIGMFCFTGLK----------PEQVERLTKEFSIYM 373 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCH-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-eECCCCeEEEecCCC----------HHHHHHHHHhCCEEE
Confidence 32 355677788899999999999998722 23 236889999997653 356788889999999
Q ss_pred ecCCCCCCCCeEEEEec-cChHHHHHHHHHHHHHH
Q 014603 382 LPGITVGLKDWLRITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 382 ~~g~~~~~~~~iRis~~-~~~~~l~~~~~~l~~~~ 415 (422)
.||. |||++ .++++|+.++++|.+++
T Consensus 374 ~pg~--------Ris~a~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 374 TKDG--------RISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CTTC--------EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred CCCc--------EEEeccCCHHHHHHHHHHHHHHh
Confidence 9984 99998 78899999999988876
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.5e-43 Score=329.64 Aligned_cols=333 Identities=20% Similarity=0.316 Sum_probs=270.0
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+.++|||+.|.+. +++|+.+++++.+.... ...|+. .+.++||+++|+++ ++++++|++++|+++++
T Consensus 21 p~~~idls~~~np----~~~p~~~~~a~~~~~~~--~~~Yp~-~~~~~Lr~aia~~~------~v~~~~I~~~~g~~~~~ 87 (355)
T d1lc5a_ 21 PDQLLDFSANINP----LGMPVSVKRALIDNLDC--IERYPD-ADYFHLHQALARHH------QVPASWILAGNGETESI 87 (355)
T ss_dssp GGGSEECSSCCCT----TCCCHHHHHHHHHTGGG--GGSCCC-TTCHHHHHHHHHHH------TSCGGGEEEESSHHHHH
T ss_pred hhheEEccCCCCC----CCCCHHHHHHHHHHHHH--hccCCC-CChHHHHHHHHHHh------CCCHHHEEecccHHHHH
Confidence 4568999998633 57789999999987754 457854 56799999999999 67889999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
..++..+. ++.+++..|.|..+.......+.+++.+++..++++.++ +.+++.+.++++++++++|+||||.+++.+
T Consensus 88 ~~~~~~~~--~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e 164 (355)
T d1lc5a_ 88 FTVASGLK--PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERP 164 (355)
T ss_dssp HHHHHHHC--CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHH
T ss_pred HHHHhhhc--cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhh
Confidence 98887764 456667788898888888889999999998777777666 456666788899999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++++|+++|+++++++|+||+|..+.+.+..... .....++++++.|+||.|+++|+|+||+++++ +.+..
T Consensus 165 ~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~-------~~~~~ 235 (355)
T d1lc5a_ 165 LLQAIADRCKSLNINLILDEAFIDFIPHETGFIP--ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD-------DAAMA 235 (355)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG--GCTTCTTEEEEEESTTTTTCTTTCCEEEECCC-------HHHHH
T ss_pred hhhhhhhhccccccccccccceeeeeeecccccc--cccccccceeecccccccccccccccceeccc-------hhhhH
Confidence 9999999999999999999999987765543322 23344679999999999999999999999864 23445
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCC
Q 014603 284 SIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI 363 (422)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (422)
.++... .....+.+++.++.+++++ ..++.+.+++++++++++.+.|.+++++. + .|.+|+|+|++++.
T Consensus 236 ~~~~~~-~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~p~~~~f~~~~~~~------ 304 (355)
T d1lc5a_ 236 RMRRQQ-MPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLT-V-YPGRANYLLLRCER------ 304 (355)
T ss_dssp HHHHHS-CTTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEE-E-CCCSSSEEEEEESC------
T ss_pred HHHhhc-CCccccccccccccccccc--cchhHHHHHHHHHHHHHHHHHHhhcCCcE-E-CCCCCEEEEEECCC------
Confidence 444333 3346778889998888875 56788888999999999999999998876 4 68889999998874
Q ss_pred CCHHHHHHHHHHhcCeEEecCCCCCC--CCeEEEEeccChHHHHHHHHHHHHHH
Q 014603 364 NSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALEDGLGRMKAFY 415 (422)
Q Consensus 364 ~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~l~~~~~~l~~~~ 415 (422)
++.++...+ .++||.|+||..|.. ++++|||++ +++++++++++|++++
T Consensus 305 -~~~~~~~~L-~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 305 -EDIDLQRRL-LTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp -TTCCHHHHH-HTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHH-HHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 345566666 466999999988754 689999987 5688899998888763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=9e-43 Score=330.19 Aligned_cols=376 Identities=15% Similarity=0.140 Sum_probs=285.3
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCC-CCCCCCCcHHHHHHHHHHhhCC-CCCCCCCCCCCHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPS-AFPSFRTASVAVDAIVHSVRSA-RFNCYSSTVGILPARRAI 96 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~-~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~i 96 (422)
++..++++.|.++.+.++++ ..++.|||++|... .....+..+.|+++......+. ...+|+|..|.++||+++
T Consensus 7 ~~~~~~~d~i~~~~~~~~~d----~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ai 82 (412)
T d1yaaa_ 7 NIELLPPDALFGIKQRYGQD----QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82 (412)
T ss_dssp TCCCCCCCTTHHHHHHHHTC----CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred cCCcCCCChHHHHHHHHhcC----CCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHH
Confidence 68889999999998877765 35568999999422 1122445688988866654433 345799999999999999
Q ss_pred HHHHhhcCCCCCCCCCEEE--ecCHHHHHHHHH--HHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 97 ADYLNRDLPYKLSPDDVYL--TLGCTQAIEVIL--TVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~~--~~g~~~a~~~~~--~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
++++.+..+..+..+.++. +.++..++..++ ..+..+||.|++++|+|..|...+...|..++.++...++++..+
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~ 162 (412)
T d1yaaa_ 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD 162 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred HHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceeccccccccccccc
Confidence 9999876654444444443 344455544443 345789999999999999999999999999999998777788888
Q ss_pred HHHHHHhh---cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCc------cccCC
Q 014603 173 LDAVEALA---DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPM------GVFGS 243 (422)
Q Consensus 173 ~~~l~~~~---~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~------~~~~~ 243 (422)
.+.+++.+ .++++++++++||||||.+++.+++++|+++|+++++++|+||+|..+.|++....+. .....
T Consensus 163 ~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T d1yaaa_ 163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242 (412)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred chhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc
Confidence 88887755 3466788999999999999999999999999999999999999999998876432221 12244
Q ss_pred CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh----h-hhhccCcchHHHHHHHHHHhhch-----HH
Q 014603 244 IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS----F-LNISSDPATFIQGAVPQILEKTE-----EE 313 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~a~~~~l~~~~-----~~ 313 (422)
.++++++.|+||.|+++|+|+||++++...... ..+....+.. . .....+++.+.|.++..++.+.. ..
T Consensus 243 ~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 321 (412)
T d1yaaa_ 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQ-NKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHK 321 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTT-HHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCeEEEEecCCccccCcCceEEEEEchhhhhh-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHH
Confidence 467899999999999999999999997532111 1112222211 1 12345778899999988887632 35
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIPC---ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 390 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 390 (422)
+++..++.++++++.+.+.|+++.. +. +..|.+|+|.|+.++ .+++++|++++||.+.||.
T Consensus 322 ~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~-~~~~~gG~F~~~~ls----------~e~~~~L~~e~~V~~~~g~----- 385 (412)
T d1yaaa_ 322 DMVTMSSRITKMRHALRDHLVKLGTPGNWD-HIVNQCGMFSFTGLT----------PQMVKRLEETHAVYLVASG----- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCT-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCc-eeCCCceEEEecCcC----------HHHHHHHHHhCCEEECCCC-----
Confidence 5777888999999999999988621 33 346889999997552 3567888899999999975
Q ss_pred CeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 391 DWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 391 ~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
|||++ .++++++.+.++|.++++.+
T Consensus 386 ---Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 386 ---RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp ---EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred ---EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 99997 78899999999999998765
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=4.8e-43 Score=332.55 Aligned_cols=372 Identities=16% Similarity=0.130 Sum_probs=278.0
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCC-CCCCCCCCcHHHHHHHHHHhhCC-CCCCCCCCCCCHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDP-SAFPSFRTASVAVDAIVHSVRSA-RFNCYSSTVGILPARRAI 96 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~i 96 (422)
++...++..|.++...+++. ..++.|||++|.. +.....+..|.|+++......+. ...+|.|..|+++||+++
T Consensus 8 ~~~~~~~~~i~~l~~~~~~d----~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreai 83 (412)
T d1ajsa_ 8 EVPQAQPVLVFKLIADFRED----PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp TCCCCCCCHHHHHHHHHHTC----CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred hCCcCCCChHHHHHHHHhcC----CCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHH
Confidence 36667778899988877654 4567899999932 11123456788988877665543 334799999999999999
Q ss_pred HHHHhhcCCCCCCCCCE--EEecCHHHHHHHHHHH-------hcCCCCEEEecCCCccchHHHHhhCCCeEEEe-eccCC
Q 014603 97 ADYLNRDLPYKLSPDDV--YLTLGCTQAIEVILTV-------LARPGANILLPRPGFPYYEARATHSHLEVRHF-DLLPA 166 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i--~~~~g~~~a~~~~~~~-------l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 166 (422)
++++.+..+..+..+++ +.+++++.++..+..+ +.+|||+|++++|+|.+|...++..|.+.+.+ +..+.
T Consensus 84 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~ 163 (412)
T d1ajsa_ 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred HHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccccc
Confidence 99998876655556654 4556666665554443 36899999999999999999999999875544 44445
Q ss_pred CCcccCHHHHHHh---hcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC---ccc
Q 014603 167 KGWEVDLDAVEAL---ADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP---MGV 240 (422)
Q Consensus 167 ~~~~~d~~~l~~~---~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~---~~~ 240 (422)
+.+..|.+.+++. ..++++++++++||||||.+++.+++++|+++|++||++||.||+|..+.|++..... ...
T Consensus 164 ~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 243 (412)
T d1ajsa_ 164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred ccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhh
Confidence 5667888777664 3567888999999999999999999999999999999999999999999887632211 112
Q ss_pred cCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh----hh-hhccCcchHHHHHHHHHHhhch----
Q 014603 241 FGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS----FL-NISSDPATFIQGAVPQILEKTE---- 311 (422)
Q Consensus 241 ~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~a~~~~l~~~~---- 311 (422)
....+.++++.|+||.++++|+|+||++++... .+...++.. .. ....+++.+.|.++..++....
T Consensus 244 ~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (412)
T d1ajsa_ 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKE-----PDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHE 318 (412)
T ss_dssp HHTTCCEEEEEECTTTSCCGGGCEEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHH
T ss_pred hhhcccccccccccccccCCCCCccccccchhH-----HHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHH
Confidence 233456788999999999999999999997432 111122211 11 2334677788888888776421
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC
Q 014603 312 -EEFFSKITDILRETADICCDRLKEIPC---ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 387 (422)
Q Consensus 312 -~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~ 387 (422)
..+++..+++++++++.+.+.|+++.. +. +..+.+|+|.|+.++ .+++.+|++++||.+.||.
T Consensus 319 ~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~-~i~~~~G~F~~~~ls----------~~~v~~L~~e~gV~~vpg~-- 385 (412)
T d1ajsa_ 319 WTGNVKTMADRILSMRSELRARLEALKTPGTWN-HITDQIGMFSFTGLN----------PKQVEYLINQKHIYLLPSG-- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCH-HHHHCCSSEEECCCC----------HHHHHHHHHTTCEECCTTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCee-eecCCCeEEEecCCC----------HHHHHHHHHhCCEEEeCCC--
Confidence 345677788899999999999998722 22 235678999986552 3556788899999999985
Q ss_pred CCCCeEEEEec-cChHHHHHHHHHHHHHHHHh
Q 014603 388 GLKDWLRITFA-VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 388 ~~~~~iRis~~-~~~~~l~~~~~~l~~~~~~~ 418 (422)
||+++ .++++++.++++|.++++++
T Consensus 386 ------Ri~~ag~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 386 ------RINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp ------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred ------eEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 99997 78899999999999999875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-43 Score=331.69 Aligned_cols=366 Identities=18% Similarity=0.166 Sum_probs=267.9
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
++...+++.|+++.+.+++. ..++.|||++|.+.+ ....+.++.|++|+.+...+.....|++..|+++||++++
T Consensus 4 ~~~~~p~d~i~~~~~~~~~d----~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia 79 (396)
T d2q7wa1 4 NITAAPADPILGLADLFRAD----ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQ 79 (396)
T ss_dssp TCCCCCC---------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHH
T ss_pred ccccCCCChHHHHHHHHhcc----CCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHH
Confidence 45667788898888766544 345679999994321 1335667899999988887766668999999999999999
Q ss_pred HHHhhcCCCCCCCCCE--EEecCHHHHHHHHHH--HhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCH
Q 014603 98 DYLNRDLPYKLSPDDV--YLTLGCTQAIEVILT--VLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDL 173 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i--~~~~g~~~a~~~~~~--~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 173 (422)
+++.+..+....++.+ +.+.+++.++.+++. ....+||.|++++|+|++|...+...|.+++.++...++++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (396)
T d2q7wa1 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF 159 (396)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEeccccccccccccc
Confidence 9998876655555544 356666666655544 446899999999999999999999999999999988777777777
Q ss_pred HHHHHh---hcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCcc-c-cCCCCCeE
Q 014603 174 DAVEAL---ADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMG-V-FGSIVPVL 248 (422)
Q Consensus 174 ~~l~~~---~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~-~-~~~~~~~i 248 (422)
..+++. ..++++++++++||||||.+++.+++++|+++|++|+++||+||+|..+.|++....... . .+..++++
T Consensus 160 ~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T d2q7wa1 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred chHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccc
Confidence 766654 345778889999999999999999999999999999999999999999988753322211 1 11234678
Q ss_pred EEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh--------hhhccCcchHHHHHHHHHHhhch-----HHHH
Q 014603 249 TLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF--------LNISSDPATFIQGAVPQILEKTE-----EEFF 315 (422)
Q Consensus 249 ~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~-----~~~~ 315 (422)
++.|+||.|+++|+|+||++++.. .++.+... .....+++...|.++..++.... ++++
T Consensus 240 ~~~s~sk~~~~~G~R~G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 311 (396)
T d2q7wa1 240 VASSYSKNFGLYNERVGACTLVAA--------DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQEL 311 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEECS--------SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ccccccccccccCCCccccccchh--------HHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence 889999999999999999999753 22222221 12334667778888877776421 4567
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCe
Q 014603 316 SKITDILRETADICCDRLKEIPC---ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 392 (422)
Q Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 392 (422)
+..+++++++++.+.+.|+++.. +. +..+.+|+|.|+.++ .+++.+|++++||.+.||+
T Consensus 312 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~G~F~~~~l~----------~e~~~~L~~e~gV~~~~g~------- 373 (396)
T d2q7wa1 312 TDMRQRIQRMRQLFVNTLQEKGANRDFS-FIIKQNGMFSFSGLT----------KEQVLRLREEFGVYAVASG------- 373 (396)
T ss_dssp HHC-CHHHHHHHHHHHHHHHTTCCSCCT-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcc-eecCCCeEEEeeCCC----------HHHHHHHHHhCCEEECCCC-------
Confidence 77888999999999999998721 33 235778999997663 3567888899999999975
Q ss_pred EEEEec-cChHHHHHHHHHHHHHH
Q 014603 393 LRITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 393 iRis~~-~~~~~l~~~~~~l~~~~ 415 (422)
|||++ .++++|++++++|.+++
T Consensus 374 -Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 374 -RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp -EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred -EEEecCCCHHHHHHHHHHHHHhC
Confidence 99997 68899999999988763
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.7e-44 Score=336.80 Aligned_cols=369 Identities=15% Similarity=0.111 Sum_probs=280.3
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCC-CCCCCCCCCCCHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSA-RFNCYSSTVGILPARRAI 96 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~i 96 (422)
++...+.+.|.++.+.+++. ..++.|||++|.+.. ....|..+.|++|........ ....|+|..|+++||+++
T Consensus 4 ~~~~~~~dpi~~~~~~~~~d----~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~ai 79 (397)
T d3tata_ 4 KVDAYAGDPILTLMERFKED----PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAI 79 (397)
T ss_dssp CCCCCCCCTTTTHHHHHHHS----CCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHhcC----CCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHH
Confidence 34456667788888777654 346679999995322 122456788999877665432 345799999999999999
Q ss_pred HHHHhhcCCCCCCCCCEEEecCHHHH----HHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccC
Q 014603 97 ADYLNRDLPYKLSPDDVYLTLGCTQA----IEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVD 172 (422)
Q Consensus 97 a~~l~~~~~~~~~~~~i~~~~g~~~a----~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 172 (422)
++++.+..+..+++++++.+.+++++ +.+++..++.+||+|++++|+|..|...++..|.+++.++...++++..+
T Consensus 80 a~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~ 159 (397)
T d3tata_ 80 APLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVR 159 (397)
T ss_dssp HHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCC
T ss_pred HHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccc
Confidence 99999887777788888887765553 55566667899999999999999999999999999999999887778888
Q ss_pred HHHHHHhh---cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCC-cc-ccCCCCCe
Q 014603 173 LDAVEALA---DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVP-MG-VFGSIVPV 247 (422)
Q Consensus 173 ~~~l~~~~---~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~-~~-~~~~~~~~ 247 (422)
.+.+.+.+ .++++++++++||||||.+++.+++++|+++|++++++||.||+|..+.|++..... .. .....+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T d3tata_ 160 FNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA 239 (397)
T ss_dssp HHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCC
T ss_pred hHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCce
Confidence 88877654 346788899999999999999999999999999999999999999999886532211 11 11233568
Q ss_pred EEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh----hh-hhccCcchHHHHHHHHHHhhch-----HHHHHH
Q 014603 248 LTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS----FL-NISSDPATFIQGAVPQILEKTE-----EEFFSK 317 (422)
Q Consensus 248 i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~ 317 (422)
+++.|+||.++++|+|+||++++.... +...++.. .. ....+++...|.++..++.... ..+++.
T Consensus 240 i~~~s~SK~~~~~G~RiG~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 314 (397)
T d3tata_ 240 LVSNSFSKIFSLYGERVGGLSVMCEDA-----EAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEE 314 (397)
T ss_dssp EECBCCHHHHTBTTTCCBCCEEECSST-----THHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred EEEecCcccccccCccccccccchhHH-----HHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999875321 12222221 11 2334667788888877776422 344556
Q ss_pred HHHHHHHHHHHHHHHhhcC-CC--CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEE
Q 014603 318 ITDILRETADICCDRLKEI-PC--ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLR 394 (422)
Q Consensus 318 ~~~~~~~~~~~l~~~L~~~-~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR 394 (422)
.+++++++++.+.+.|+.. +. +. +..|.+|+|+|+.++ .+++.+|++++||.+.||. |
T Consensus 315 ~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~G~F~~~~ls----------~e~~~~L~~e~~V~l~~g~--------R 375 (397)
T d3tata_ 315 MRTRILAMRQELVKVLSTEMPERNFD-YLLNQRGMFSYTGLS----------AAQVDRLREEFGVYLIASG--------R 375 (397)
T ss_dssp HHHHHHHHHHHHHHTTTTTCTTSCTT-HHHHCCSSBCCCCCC----------HHHHHHHTTTTCEECCSSS--------C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceE-EEcCCCceEEecCcC----------HHHHHHHHHhCCEEeCCCC--------E
Confidence 6677788888888888775 22 34 336888999997663 3567888899999999985 9
Q ss_pred EEec-cChHHHHHHHHHHHHHH
Q 014603 395 ITFA-VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 395 is~~-~~~~~l~~~~~~l~~~~ 415 (422)
||++ .++++|+.++++|.+++
T Consensus 376 i~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 376 MCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp CBTTSCCTTTHHHHHHHHHHHC
T ss_pred EEeccCCHHHHHHHHHHHHHhC
Confidence 9997 78899999999988763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=7.5e-42 Score=322.71 Aligned_cols=367 Identities=16% Similarity=0.149 Sum_probs=274.7
Q ss_pred HHhhccCccHHHHHHHHHhhhhccCCCCceeecCCCCCC-CCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q 014603 19 ELKTASGITVRGVLNSLLENLNKNDTRPLIPLGHGDPSA-FPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIA 97 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~-~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia 97 (422)
.++..+++.|+++...+++. ..++.|||++|...+ ....+++|.|++|+.+.+++.....|.|..|+++||++++
T Consensus 4 ~~~~~~~d~i~~l~~~~~~d----~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia 79 (394)
T d2ay1a_ 4 NLKPQAPDKILALMGEFRAD----PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMG 79 (394)
T ss_dssp GCCCCCCCSHHHHHHHHHHC----CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHhCC----CCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Confidence 46677888899988877654 346789999995322 2334567899999999887665558999999999999999
Q ss_pred HHHhhcCCCCCCCCCEEEecCHH--HHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHH
Q 014603 98 DYLNRDLPYKLSPDDVYLTLGCT--QAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDA 175 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~~~~g~~--~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 175 (422)
+++.+..+.....+. ++++|++ .++.+.+..+..+||.|++++|+|..|...++..|.+++.++...++++..+.+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 158 (394)
T d2ay1a_ 80 ELILGDGLKSETTAT-LATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEG 158 (394)
T ss_dssp HHHHGGGCCGGGEEE-EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHH
T ss_pred HHHhccccccccccc-eeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchh
Confidence 999876553333334 4444444 3455556667899999999999999999999999999999998776666677666
Q ss_pred HHHhh---cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccc--cCCCCCeEEE
Q 014603 176 VEALA---DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGV--FGSIVPVLTL 250 (422)
Q Consensus 176 l~~~~---~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~--~~~~~~~i~i 250 (422)
+++.. .++++++++++||||||.+++.+++++|+++|++++++||+||+|..+.|++........ .....+++++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T d2ay1a_ 159 MKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA 238 (394)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccc
Confidence 65543 446777888899999999999999999999999999999999999999887543222111 1123457889
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH----hhh-hhccCcchHHHHHHHHHHhhch-----HHHHHHHHH
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK----SFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKITD 320 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~ 320 (422)
.|+||.++++|+|+||++++... .+...... ... .....++...|..+...+.... ...++..++
T Consensus 239 ~s~sk~~~~~G~R~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 313 (394)
T d2ay1a_ 239 ASCSKNFGIYRERTGCLLALCAD-----AATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRS 313 (394)
T ss_dssp EECTTTTTCGGGCEEEEEEECSS-----HHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcccccchhhchhH-----HHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997532 11111111 111 2234566677777766665421 355677788
Q ss_pred HHHHHHHHHHHHhhcCCC---CCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe
Q 014603 321 ILRETADICCDRLKEIPC---ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF 397 (422)
Q Consensus 321 ~~~~~~~~l~~~L~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 397 (422)
+++++++.+.+.|+++.+ +. +..|.+|+|.|+.++ .+++++|++++||.+.||. |||+
T Consensus 314 ~~~~~r~~l~~~L~~~~~~~~~~-~~~~~~G~F~~~~ls----------~~~~~~L~~~~~V~~~~g~--------Ri~~ 374 (394)
T d2ay1a_ 314 GMLRLREQLAGELRDLSGSDRFG-FVAEHRGMFSRLGAT----------PEQVKRIKEEFGIYMVGDS--------RINI 374 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTT-HHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTTC--------EEEG
T ss_pred HHHHHHHHHHHHHHHhCCCCcee-eECCCceeEEecCcC----------HHHHHHHHHhCCEEecCCC--------EEEe
Confidence 899999999999987522 33 346889999997663 3567888899999999974 9999
Q ss_pred c-cChHHHHHHHHHHHHH
Q 014603 398 A-VEPSALEDGLGRMKAF 414 (422)
Q Consensus 398 ~-~~~~~l~~~~~~l~~~ 414 (422)
+ .++++|+.+.++|.++
T Consensus 375 a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 375 AGLNDNTIPILARAIIEV 392 (394)
T ss_dssp GGCCTTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 7 7889999988888775
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-40 Score=307.68 Aligned_cols=324 Identities=18% Similarity=0.298 Sum_probs=254.3
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
.+...|.|+.+... +++++.+ .....++|+.. ...+||+++|+++ ++++++|++|+|++++
T Consensus 25 ~~~~~i~L~~ne~p----~~~~~~~--------~~~~l~rYPd~-~~~~Lr~~ia~~~------gv~pe~I~it~Gs~ea 85 (354)
T d1fg7a_ 25 GGNGDVWLNANEYP----TAVEFQL--------TQQTLNRYPEC-QPKAVIENYAQYA------GVKPEQVLVSRGADEG 85 (354)
T ss_dssp TTTCSEECSSCCCS----SCCCCCC--------CCCCTTSCCCS-SCHHHHHHHHHHH------TSCGGGEEEESHHHHH
T ss_pred CCCCCEEeeCCCCC----CCCCHHH--------HHHHHhcCCCC-cHHHHHHHHHHHh------CCChHHeeeccCchHH
Confidence 35667999888622 2333322 22345688654 5689999999999 6899999999999999
Q ss_pred HHHHHHHhcCCCC-EEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccC
Q 014603 123 IEVILTVLARPGA-NILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 123 ~~~~~~~l~~~gd-~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~ 201 (422)
+..++++++++|| .|+++.|+|..+...++..|.+++.++.. +++.+|++.++..+. +++++++++|+||||.+++
T Consensus 86 i~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~--~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~ 162 (354)
T d1fg7a_ 86 IELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLIN 162 (354)
T ss_dssp HHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHhhccccccccccccccccchhhhhccCceeeccccc--cccccchhhhhhccc-ccceeeccCCCccceeEee
Confidence 9999999999998 58889999999999999999999888764 568899999988764 7899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.++++.+.+.++ ++.++|+||+|..+.+.... .......+++++++||||.|+++|+|+||++++ +++
T Consensus 163 ~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~---~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~--------~~~ 230 (354)
T d1fg7a_ 163 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASL---AGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN--------EEV 230 (354)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCS---GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC--------HHH
T ss_pred eccccccccccc-ccccccccccchhhcccccc---chhhcccccceEEeCCccccCCCcccccccccc--------chh
Confidence 999999988886 47888888888776543322 122344567899999999999999999999986 578
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
++.+...... ...+.+.+.++..++......+.....+++.+.++.+.+.|.+++++. ...|++++|+|++++
T Consensus 231 i~~l~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~-~~~p~~~~f~~~~~~----- 303 (354)
T d1fg7a_ 231 INLLMKVIAP-YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVE-QVFDSETNYILARFK----- 303 (354)
T ss_dssp HHHHHHHSCS-SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEE-EECCCSSSEEEEEET-----
T ss_pred hhhhhhhcCc-cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcc-eeCCCCceEEEEeCC-----
Confidence 8888766543 355666777666666654445566677788889999999999997765 336888999999986
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCC-CCCCeEEEEeccChHHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITV-GLKDWLRITFAVEPSALEDGLGRMK 412 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~-~~~~~iRis~~~~~~~l~~~~~~l~ 412 (422)
++.+++..| .++||+|+++..| +.++|+|||+++ +++.++++++|+
T Consensus 304 ---~~~~~~~~L-~~~gIlvr~~~~~~~~~~~lRisigt-~ee~~~~l~aLk 350 (354)
T d1fg7a_ 304 ---ASSAVFKSL-WDQGIILRDQNKQPSLSGCLRITVGT-REESQRVIDALR 350 (354)
T ss_dssp ---THHHHHHHH-HHTTEECEECTTSTTCTTEEEEECCC-HHHHHHHHHHHH
T ss_pred ---CHHHHHHHH-HHCCcEEecCCCCCCCCCEEEEEeCC-HHHHHHHHHHHh
Confidence 466677766 4569999998765 458999999974 567777777665
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-39 Score=300.66 Aligned_cols=318 Identities=19% Similarity=0.233 Sum_probs=251.3
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
..+.++|+|+.|.+. +++|+.+.+++.+.+.......| |..|.++||+++++++++. ++++++|++|+|+++
T Consensus 16 ~~~~d~~~l~~~enp----~~~p~~i~~~~~~~~~~~~~~~y-p~~g~~~Lr~aia~~~~~~---~v~~d~I~it~G~~~ 87 (334)
T d2f8ja1 16 TEKRDKTYLALNENP----FPFPEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTD---FLSKNNVSVGNGADE 87 (334)
T ss_dssp CCCCCSEECSSCCCS----SCCCHHHHHHHHHHCCTTGGGSC-CCSSCHHHHHHHHHHHTCS---SCCGGGEEEEEHHHH
T ss_pred ccCCCceEEECCCCC----CCCCHHHHHHHHHHhhcchhcCC-CCCCcHHHHHHHHHHhccc---CCCcceEEecCcchh
Confidence 357899999999733 68889999999998877655445 6679999999999999764 478899999999999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccC
Q 014603 122 AIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYT 201 (422)
Q Consensus 122 a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~ 201 (422)
++..+++. ||+|++++|+|..+...++..|++++.++++++.. .+ +...++++++++++|+||||.+++
T Consensus 88 ~l~~l~~~----~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~--~~-----~~~~~~~~~l~l~nP~NPtG~~~s 156 (334)
T d2f8ja1 88 IIYVMMLM----FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLR--IP-----EVNVGEGDVVFIPNPNNPTGHVFE 156 (334)
T ss_dssp HHHHHHHH----SSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSC--CC-----CCCCCTTEEEEEESSCTTTCCCCC
T ss_pred HHHHHhhh----ccccccccccccccccchhccCCcccccccccccc--cc-----ccccccceEEEecccccccceeec
Confidence 99887654 69999999999999999999999999999865322 21 223457889999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhH
Q 014603 202 YQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGI 281 (422)
Q Consensus 202 ~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 281 (422)
.+++.++ .++++++|+||+|..+.+... .......+++++++|+||.++.+|+|+||++++ +++
T Consensus 157 ~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~----~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~--------~~~ 220 (334)
T d2f8ja1 157 REEIERI----LKTGAFVALDEAYYEFHGESY----VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS--------EKF 220 (334)
T ss_dssp HHHHHHH----HTTTCEEEEECTTGGGTCCCC----GGGGGTCSSEEEEEESTTTSSCTTTCEEEEEEC--------HHH
T ss_pred HHHhhcc----ccceeEEeecccchhhccccc----ccccccCceEEEEecCccccchhhhhhhhcccc--------hHH
Confidence 8777653 457999999999977543322 222334468999999999999999999999996 578
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCccccc
Q 014603 282 VDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLE 361 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (422)
+.++...... ...+..++.++.+++.. .+++++.++.++++++.+.+.|+++ ++. +..|. |.|+|+.++..
T Consensus 221 i~~l~~~~~~-~~~s~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~-g~f~~~~~~~~--- 291 (334)
T d2f8ja1 221 IDAYNRVRLP-FNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-ITDSR-GNFVFVFMEKE--- 291 (334)
T ss_dssp HHHHHHHSCT-TCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHH-TCE-ECCCC-SSEEEEECCHH---
T ss_pred HHHHHHhhcc-cccchhhhhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHC-CCe-ECCCC-ceEEEEECCCC---
Confidence 8888776644 35677888888888875 5788888899999999999999998 777 43554 56889888753
Q ss_pred CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHHHHHH
Q 014603 362 GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLGRMKA 413 (422)
Q Consensus 362 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~~l~~ 413 (422)
+..++.+.+ .++||.|+++ ++++|||+++ .+|+++++++|++
T Consensus 292 ---~~~~~~~~L-~~~GI~vr~~-----~~~vRis~g~-~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 292 ---EKERLLEHL-RTKNVAVRSF-----REGVRITIGK-REENDMILRELEV 333 (334)
T ss_dssp ---HHHHHHHHH-HHTTEECEEE-----TTEEEEECCC-HHHHHHHHHHHHH
T ss_pred ---CHHHHHHHH-HHCCCEECCC-----CCeEEEEcCC-HHHHHHHHHHHhc
Confidence 455666665 5679999763 5899999975 4577888877764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=1.6e-37 Score=291.37 Aligned_cols=330 Identities=14% Similarity=0.149 Sum_probs=242.8
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHH-HHHHhh-CC-CCCCCCCCC----CCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDA-IVHSVR-SA-RFNCYSSTV----GILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a-~~~~~~-~~-~~~~y~~~~----g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+..++|+++|+|..+. |-.++. -..++. .+ ...+|.... ..++|++.|+++.....+...+..+|+++
T Consensus 55 ~~~~~~~~~gdp~~~~-----~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG 129 (425)
T d2hoxa1 55 QGCSADVASGDGLFLE-----EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFG 129 (425)
T ss_dssp TTCCEECCSCCCGGGH-----HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEE
T ss_pred CCceeeCCCCCCCCCC-----HHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEEC
Confidence 4558999999987421 212221 122211 11 112344322 23899999999876654434455679999
Q ss_pred cCHHHHHHHHHHHh--------cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEE
Q 014603 117 LGCTQAIEVILTVL--------ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV 188 (422)
Q Consensus 117 ~g~~~a~~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~ 188 (422)
+|+++++++++++| ..|||+|+++.|+|..|...++..+.+... |.+|.+.+++.+++++++++
T Consensus 130 ~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~--------~~~D~~~~~~~~~~~~~ii~ 201 (425)
T d2hoxa1 130 VGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEM 201 (425)
T ss_dssp SHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEE
T ss_pred CCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc--------cCCCHHHHHhhCCCCceEEE
Confidence 99999999999998 468899999999999999999888765443 44677888888888999999
Q ss_pred EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 189 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
+|+||||||.+.. +..+++.+|+||+|....|. ++. ...++++++.|+||.|+++|+|+||++
T Consensus 202 l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~-----~~~--~~~~~~Ivl~S~SK~fglaGlRiGw~i 264 (425)
T d2hoxa1 202 VTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT-----PIK--YKADEDILLFTMSKFTGHSGSRFGWAL 264 (425)
T ss_dssp EESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS-----CCC--SCBCCSEEEEEHHHHTSCGGGCCEEEE
T ss_pred EECCCCCCcchhh----------hhhhCCEEEEeccccCcccc-----chh--hhcCCeEEEEeCHHhccCcchheeeEE
Confidence 9999999998731 22358999999999653332 222 233568999999999999999999998
Q ss_pred eeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhch----------HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTE----------EEFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
+++ +.+.+++...... +.+++.++|.++..+|+... ..+++..++.++++++.+.+.|++.+
T Consensus 265 ~~~-------~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~ 337 (425)
T d2hoxa1 265 IKD-------ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSD 337 (425)
T ss_dssp ECC-------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eCC-------HHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 865 5677878776643 45788899999988886521 23567778889999999999998864
Q ss_pred CCCCCCC-------------CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEEeccChHH
Q 014603 338 CITCPKK-------------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSA 403 (422)
Q Consensus 338 ~~~~~~~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis~~~~~~~ 403 (422)
.+.+... +..+.|.|+++... ..+++.++++++||.++||..|+. ++++|||+..++++
T Consensus 338 ~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~-------~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ 410 (425)
T d2hoxa1 338 RFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-------EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDD 410 (425)
T ss_dssp SEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-------GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHH
T ss_pred CceeeccCCccceeeeeeccCCCcceeeeeCCCC-------hHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHHH
Confidence 4332211 23345778776532 333455677889999999999986 68999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYDR 417 (422)
Q Consensus 404 l~~~~~~l~~~~~~ 417 (422)
+++++++|++++++
T Consensus 411 ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 411 FDQLMYYLKDMVKA 424 (425)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998853
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.3e-30 Score=242.83 Aligned_cols=349 Identities=17% Similarity=0.173 Sum_probs=258.0
Q ss_pred ccHHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC--------CCCHHHHHHHH
Q 014603 26 ITVRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST--------VGILPARRAIA 97 (422)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~--------~g~~~lr~~ia 97 (422)
..+|+.++.+.+. ..+.+++.|+++..+ ++|+.+.+++.+.+.+...+..... ..+.+.|+.++
T Consensus 5 ~~vR~~FP~l~~~---~~~~~~iYld~a~~~-----~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia 76 (405)
T d1jf9a_ 5 DKVRADFPVLSRE---VNGLPLAYLDSAASA-----QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRAS 76 (405)
T ss_dssp HHHHHTCGGGGCE---ETTEECEECCTTTCC-----CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChhcccC---cCCCCeEEEeCcccc-----CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 3456655555332 145678999988755 6789999999988765322211111 12567788899
Q ss_pred HHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh----cCCCCEEEecCCCccc----hHHHHhhCCCeEEEeeccCCCCc
Q 014603 98 DYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL----ARPGANILLPRPGFPY----YEARATHSHLEVRHFDLLPAKGW 169 (422)
Q Consensus 98 ~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~ 169 (422)
++++. ..+++|++++|+|++++.++.++ ..+||+|++.+.+|++ +...++..|++++.+|++++ .
T Consensus 77 ~~l~~-----~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~--g 149 (405)
T d1jf9a_ 77 LFINA-----RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--G 149 (405)
T ss_dssp HHTTC-----SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT--S
T ss_pred HHcCC-----CCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCC--C
Confidence 98842 34589999999999999988763 5789999999999976 45566778999999998753 4
Q ss_pred ccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEE
Q 014603 170 EVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLT 249 (422)
Q Consensus 170 ~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 249 (422)
.+|++.+++.++++++++++++.+|.||.++| +++|.++|+++|+++++|.+|+. |..+.++..++.| ++
T Consensus 150 ~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~----g~~~id~~~~~~D---~~ 219 (405)
T d1jf9a_ 150 TLQLETLPTLFDEKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV----MHHPVDVQALDCD---FY 219 (405)
T ss_dssp CBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EE
T ss_pred cCCHHHHHHhccCCcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec----cccccchhhcCCc---ee
Confidence 58999999999999999999999999999965 77778889999999999999987 5555566666666 99
Q ss_pred EecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh-----------------------hhhhccCcchHHHHHHHHH
Q 014603 250 LGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS-----------------------FLNISSDPATFIQGAVPQI 306 (422)
Q Consensus 250 i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~ 306 (422)
+.|++|++|.+| +|+++.+ +++.+.+.. .....++++.....++..+
T Consensus 220 ~~s~hK~~Gp~G--~g~l~v~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~a 289 (405)
T d1jf9a_ 220 VFSGHKLYGPTG--IGILYVK--------EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAA 289 (405)
T ss_dssp EEEGGGTTSCSS--CEEEEEC--------HHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHH
T ss_pred eccccccccCCC--ceeeeec--------hhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHH
Confidence 999999987777 7888775 233322211 0112357777888888888
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCC
Q 014603 307 LEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE-GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 385 (422)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 385 (422)
++...+...+...++...+.+.+.+.++.++.+... .|. .+..+.+.++.. ++.++... +.++||.+..|.
T Consensus 290 l~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~-~~~~r~~ivsf~~~~~------~~~~~~~~-L~~~gI~v~~G~ 361 (405)
T d1jf9a_ 290 LEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLY-GPQNRLGVIAFNLGKH------HAYDVGSF-LDNYGIAVRTGH 361 (405)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEE-SCTTCCSEEEEEETTC------CHHHHHHH-HHHTTEECEEEC
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHhhhhcCCccccc-CCcCcCcEEEEEcCCC------CHHHHHHH-HHHCCcEEEccc
Confidence 876555567888888888888999999988665422 332 233444556532 45665555 477899999888
Q ss_pred CCC--------CCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 386 TVG--------LKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 386 ~~~--------~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
.|. .++.+|||++ ++.+||+++++.|+++.+-
T Consensus 362 ~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 362 HCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp TTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 763 3678999998 7899999999999988764
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=4.1e-29 Score=234.72 Aligned_cols=336 Identities=15% Similarity=0.153 Sum_probs=229.1
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC------------CCCHHHHHHHHHHHhhcCCCCCCCCCEEE
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST------------VGILPARRAIADYLNRDLPYKLSPDDVYL 115 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~ 115 (422)
|.|+++..+ |.++.++++|.+.+.... .|+.+ ..++++|+.+|+++ ++++++|++
T Consensus 4 iYlD~aa~~-----p~~~~v~ea~~~~~~~~~--~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l------g~~~~~I~~ 70 (391)
T d1p3wa_ 4 IYLDYSATT-----PVDPRVAEKMMQFMTMDG--TFGNPASRSHRFGWQAEEAVDIARNQIADLV------GADPREIVF 70 (391)
T ss_dssp EECBTTTCC-----CCCHHHHHHHHTTTSTTS--CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH------TCCGGGEEE
T ss_pred EEeeCcccc-----CCCHHHHHHHHHHHHhcc--ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEE
Confidence 678887644 778999999999876532 23321 11447889999999 568899999
Q ss_pred ecCHHHHHHHHHHHh----cCCCCEEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEE
Q 014603 116 TLGCTQAIEVILTVL----ARPGANILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALV 188 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~ 188 (422)
|+|+|++++.++.++ .++||+|++.++.|++... .++..|.+++.++.+. .+.+|++.+++.++++|++++
T Consensus 71 ~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~~~~~i~~~T~lv~ 148 (391)
T d1p3wa_ 71 TSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVS 148 (391)
T ss_dssp ESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEE
T ss_pred ECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC--CCeEcHHHHHHhCCCCcEEEE
Confidence 999999999988765 4799999999999987643 3445689999998753 346899999999999999999
Q ss_pred EeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEE
Q 014603 189 IINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLV 268 (422)
Q Consensus 189 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~ 268 (422)
+++++||||.++| +++|+++|+++|+++++|.+|+. |..+.++...+.+ +++.|.+|++|.+| +|+++
T Consensus 149 is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~----g~~~~d~~~~~~D---~~~~s~~k~~g~~g--~g~~~ 216 (391)
T d1p3wa_ 149 IMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSV----GKLPIDLSQLKVD---LMSFSGHKIYGPKG--IGALY 216 (391)
T ss_dssp CCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTB----TTBCCCTTTSCCS---EEEEESTTTTSCSS--CEEEE
T ss_pred EECCCCCCeeECC---HHHHHHHhccCCcEEEEeecccc----CCccccchhcccc---ccccccccccCCCc--eEEEE
Confidence 9999999999976 66788889999999999999986 3334455555544 88889999987777 57777
Q ss_pred eeCCCCcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CC
Q 014603 269 TSDPNGILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK--PE 346 (422)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~ 346 (422)
++........+.............++.+.....++...+... ........++++++++.+.+.|..+++..+... ..
T Consensus 217 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 295 (391)
T d1p3wa_ 217 VRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHG 295 (391)
T ss_dssp ECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTS
T ss_pred EecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCeeeccccccc
Confidence 754211110000000000001112233333444444444432 234455567788888888888888755432111 11
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHH
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALE 405 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~ 405 (422)
....+.+.++.. ...++...+ +++.+..|..|.. .+.+|||++ ++.+|++
T Consensus 296 ~~~~~~~~~~~~------~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid 366 (391)
T d1p3wa_ 296 APNILNVSFNYV------EGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 366 (391)
T ss_dssp CTTEEEEEETTS------CHHHHHHHT---TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred CceEEEEEeCCC------ChHHHHHHh---CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHH
Confidence 222333344332 455555443 3677777765421 257999998 6899999
Q ss_pred HHHHHHHHHHHHhcc
Q 014603 406 DGLGRMKAFYDRHAK 420 (422)
Q Consensus 406 ~~~~~l~~~~~~~~~ 420 (422)
++++.|+++++++++
T Consensus 367 ~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 367 YTIELVRKSIGRLRD 381 (391)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988753
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.97 E-value=1.1e-28 Score=232.61 Aligned_cols=348 Identities=16% Similarity=0.178 Sum_probs=257.7
Q ss_pred HHHHHHHHHhhhhccCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC--------CCCHHHHHHHHHH
Q 014603 28 VRGVLNSLLENLNKNDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST--------VGILPARRAIADY 99 (422)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~--------~g~~~lr~~ia~~ 99 (422)
||+.++.+.+. ..+.++|.|+++..+ ++|+.+.+++.+.+.+...+..... ..+++.|+.++++
T Consensus 7 iR~~FP~l~~~---~~~~~~iYld~a~~~-----~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~l 78 (408)
T d1t3ia_ 7 VRQDFPILNQE---INGHPLVYLDNAATS-----QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKF 78 (408)
T ss_dssp HGGGCGGGSCE---ETTEECEECBTTTCC-----CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccccc---cCCCCeEEeeCcccc-----CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666555332 246778999999866 6789999999998875322211110 2345678889999
Q ss_pred HhhcCCCCCC-CCCEEEecCHHHHHHHHHHHh----cCCCCEEEecCCCccch----HHHHhhCCCeEEEeeccCCCCcc
Q 014603 100 LNRDLPYKLS-PDDVYLTLGCTQAIEVILTVL----ARPGANILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWE 170 (422)
Q Consensus 100 l~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l----~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~ 170 (422)
+ +++ ++.++++++++++++.++.++ .++|++|++.+-+|++. ...++..|..++.++... ...
T Consensus 79 l------ga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~--~~~ 150 (408)
T d1t3ia_ 79 I------NARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE--QES 150 (408)
T ss_dssp T------TCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT--TSS
T ss_pred h------CCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccc--ccc
Confidence 8 444 578999999999999988763 57899999999999754 345566789999888754 345
Q ss_pred cCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEE
Q 014603 171 VDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTL 250 (422)
Q Consensus 171 ~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i 250 (422)
.+.+.+++.++++++++++++.+|.||..+| +++|.++|+++|+++++|.+|+. |..+.++..++.| +++
T Consensus 151 ~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~----g~~~id~~~~~~D---~~~ 220 (408)
T d1t3ia_ 151 FDLEHFKTLLSEKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSA----PHYPLDVQLIDCD---WLV 220 (408)
T ss_dssp BCHHHHHHHCCTTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT----TTSCCCHHHHTCS---EEE
T ss_pred ccHHHhhhccCCCceEEEEecccccccccCc---HHHHhhhhhccCceeeeccceec----ccccccccccCCc---eEE
Confidence 7899999999999999999999999999976 66778889999999999999987 5555666666665 889
Q ss_pred ecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh----------------------hhhccCcchHHHHHHHHHHh
Q 014603 251 GSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF----------------------LNISSDPATFIQGAVPQILE 308 (422)
Q Consensus 251 ~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~~l~ 308 (422)
.|.+|++|.+| +|+++.+ ++....+... ....++++.....++..+++
T Consensus 221 ~s~hK~~gp~G--~g~l~v~--------~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~ 290 (408)
T d1t3ia_ 221 ASGHKMCAPTG--IGFLYGK--------EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD 290 (408)
T ss_dssp EEGGGTTSCTT--CEEEEEC--------HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH
T ss_pred eccccccCCCC--ccccccc--------hhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHH
Confidence 99999976666 7888875 3444333211 11245677777788888887
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC
Q 014603 309 KTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG 384 (422)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 384 (422)
...+...+++.++..++.+++.+.+++.+++.+...+ ..+..+.+.++.. +..++...| .++||.+..|
T Consensus 291 ~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~------~~~~v~~~L-~~~gI~v~~G 363 (408)
T d1t3ia_ 291 YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL------HASDVATMV-DQDGIAIRSG 363 (408)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB------CHHHHHHHH-HTTTEECBCS
T ss_pred HHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC------CHHHHHHHH-hhCCcEEecC
Confidence 6555677888888889999999999998776533111 1133444555532 566666655 7789999988
Q ss_pred CCCC--------CCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 385 ITVG--------LKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 385 ~~~~--------~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
..|. ..+.+|||++ ++++|++++++.|+++++.+
T Consensus 364 ~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 364 HHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp CTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 8764 3678999998 78999999999999998764
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.96 E-value=1.1e-28 Score=230.97 Aligned_cols=328 Identities=14% Similarity=0.135 Sum_probs=227.1
Q ss_pred CceeecCCCCCCCCCCCCcHHHHHHHHHHhhCC---CCCCCCC----CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 46 PLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSA---RFNCYSS----TVGILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 46 ~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
..+.|+++..+ +.|+.+.+++.+.+..- ....+.. ..-+.++|+.+|+++ ++++++|++|+|
T Consensus 7 ~~~yld~~~~~-----~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~i~~~~g 75 (381)
T d1elua_ 7 NKTYFNFGGQG-----ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF------NVDPNTITITDN 75 (381)
T ss_dssp TSEECCTTTCC-----CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT------TSCGGGEEEESS
T ss_pred CCEEeeCCccc-----CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh------CCCcccEEEECC
Confidence 35788888744 56778888888876531 1111111 122456788888888 567889999999
Q ss_pred HHHHHHHHHHHh-cCCCCEEEecCCCccch----HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 119 CTQAIEVILTVL-ARPGANILLPRPGFPYY----EARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 119 ~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+|++++.++.++ .++||+|++++++|++. ...++..|++++.++.........+.+.+++.++++++++++++++
T Consensus 76 ~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~ 155 (381)
T d1elua_ 76 VTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLL 155 (381)
T ss_dssp HHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBC
T ss_pred hHHHhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhccccccccccccc
Confidence 999999999998 67999999999999754 3455567899999887544333334567778888899999999999
Q ss_pred CCcccccCHHHHHHHHHHHHH----cCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 194 NPCGNVYTYQHLQKIAETAKK----LGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~----~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
|+||.++|. ++|.++|++ +++++++|.+|+. |..+..+..++.| +++.|++|+++.| .++|++++
T Consensus 156 n~tG~~~~~---~~I~~l~~~~~~~~~~~~~vD~~~~~----g~~~~~~~~~~~D---~~~~s~~K~~~~p-~G~g~l~~ 224 (381)
T d1elua_ 156 WNTGQVLPL---AEIMAVCRRHQGNYPVRVLVDGAQSA----GSLPLDFSRLEVD---YYAFTGHKWFAGP-AGVGGLYI 224 (381)
T ss_dssp TTTCCBCCH---HHHHHHHHHCCSSSCCEEEEECTTTB----TTBCCCTTTSCCS---EEEEESSSTTCCC-TTCEEEEE
T ss_pred ccccccchh---hHHHHHHhhccccccccccccccccc----ccccccccccccc---ccccccccccccc-chhhHHHh
Confidence 999999875 556666666 4699999999986 4444455555544 8999999997543 34788877
Q ss_pred eCCCCcccchhHHHHHHh-----------------------hhhhccCcchHHHHHHHHHHhhchHHH-HHHHHHHHHHH
Q 014603 270 SDPNGILQDSGIVDSIKS-----------------------FLNISSDPATFIQGAVPQILEKTEEEF-FSKITDILRET 325 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~ 325 (422)
++. ..+++.. .....++++.....++.++++...... .+...++..++
T Consensus 225 ~~~--------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~ 296 (381)
T d1elua_ 225 HGD--------CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQR 296 (381)
T ss_dssp CTT--------TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hHH--------HHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhH
Confidence 532 2222210 011223566666667777776533222 34556788888
Q ss_pred HHHHHHHhhcCCCCCCCC--CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cCh
Q 014603 326 ADICCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEP 401 (422)
Q Consensus 326 ~~~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~ 401 (422)
++++.+.|+++|++.++. .|.++ ++.+.++.. ....++.. .++++||.+.. ++.++++|||++ ++.
T Consensus 297 ~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~-----~~~~~i~~-~L~~~gi~v~~---~~~~~~lRis~~~~nt~ 366 (381)
T d1elua_ 297 SEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSP-----LGHRAIVQ-KLEEQRIYLRT---IADPDCIRACCHYITDE 366 (381)
T ss_dssp HHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSS-----SCHHHHHH-HHHHTTEECEE---ETTTTEEEEECCTTCCH
T ss_pred HHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCC-----CCHHHHHH-HHHhCCcEEEe---cCCCCEEEEecCCCCCH
Confidence 999999999998876432 23434 555555432 23455544 55778998864 234689999998 689
Q ss_pred HHHHHHHHHHHH
Q 014603 402 SALEDGLGRMKA 413 (422)
Q Consensus 402 ~~l~~~~~~l~~ 413 (422)
+|++++++.|++
T Consensus 367 edid~ll~~l~e 378 (381)
T d1elua_ 367 EEINHLLARLAD 378 (381)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=1.2e-28 Score=228.60 Aligned_cols=331 Identities=16% Similarity=0.076 Sum_probs=216.4
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
+.++++...... ++..+...+++.. .+.+..+.+++++..++.++. ...+++++++|+++|+.
T Consensus 20 ~~i~~~~gl~~~----~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~a~~ 82 (366)
T d2aeua1 20 DALYDLSGLSGG----FLIDEKDKALLNT--------YIGSSYFAEKVNEYGLKHLGG-----DENDKCVGFNRTSSAIL 82 (366)
T ss_dssp GGCEECSSCCCC----CCCCHHHHHHHTS--------TTHHHHHHHHHHHHHHHHHTC-----CTTEEEEEESSHHHHHH
T ss_pred chHhhhccCCCC----CCccHHHHHHHHH--------hcCchhhHHHHHHHHHHHccC-----CCccEEEEeCCHHHHHH
Confidence 446777655433 4555555544322 122334567888888888852 34578999999999999
Q ss_pred HHHHHhcCCCCEEEec-CCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHH
Q 014603 125 VILTVLARPGANILLP-RPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQ 203 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~ 203 (422)
.++.++..+++.|+++ .|+|..+...++..|++++. . -|++++++.++++++++++++|+||++ ++.+
T Consensus 83 ~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~--~-------~d~e~l~~~i~~~tk~i~~~~p~n~~~--~~~~ 151 (366)
T d2aeua1 83 ATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFE--S-------DKVGEILNKIDKDTLVIITGSTMDLKV--IELE 151 (366)
T ss_dssp HHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEE--E-------SCHHHHHTTCCTTEEEEEECBCTTSCB--CCHH
T ss_pred HHHHHhCCCCEEEEecCCCcchhHHHHHHhcCCeEEC--C-------CCHHHHHHhcCCCceEEEEEecCCCCc--CCHH
Confidence 9999986544444554 58999999999999987542 2 278999999999999999999998753 4558
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHH
Q 014603 204 HLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 204 ~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
++++|+++|+++|+++|+||+|+...+...........+.+ +++.|+||.+ +|+|+||++++ +++++
T Consensus 152 ~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~d---i~~~S~sK~~--~g~~~G~i~~~--------~~~i~ 218 (366)
T d2aeua1 152 NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGAD---LVVTSTDKLM--EGPRGGLLAGK--------KELVD 218 (366)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCS---EEEEETTSSS--SSCSCEEEEEE--------HHHHH
T ss_pred HHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCce---EEEecccccc--cccceeEEEec--------HHHHH
Confidence 99999999999999999999998765543322222233333 8889999974 58899999997 57888
Q ss_pred HHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHH----HHHHHHHHhhcCCCCCC-CCCCCCceEEEEecCc
Q 014603 284 SIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRE----TADICCDRLKEIPCITC-PKKPEGSMFVMVKLNY 357 (422)
Q Consensus 284 ~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~-~~~~~~g~~~~~~~~~ 357 (422)
+++.... ...+++++.++++..+|+......+++..+..++ ..+.+.......++... ...+..+.+++.....
T Consensus 219 ~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (366)
T d2aeua1 219 KIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK 298 (366)
T ss_dssp HHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCc
Confidence 8877664 3446677888888888764322222222222222 22333333333333210 1123344555554432
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCC-CCCCeEEEEecc-ChH--HHHHHHHHHHHHHH
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITV-GLKDWLRITFAV-EPS--ALEDGLGRMKAFYD 416 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-~~~~~iRis~~~-~~~--~l~~~~~~l~~~~~ 416 (422)
.......++.++...|++++||.+.||..| +..+++|||++. +.+ +.+.+++.|.+.++
T Consensus 299 ~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 299 DDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred ceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence 110001134567888899999999999877 346799999983 222 23445555555544
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.4e-27 Score=220.37 Aligned_cols=330 Identities=14% Similarity=0.117 Sum_probs=237.9
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF------NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+++.++||++.+ |.++..+|+++++..+++++... ..++....+.++++.+|+|+ ..+..+++
T Consensus 36 ~g~~~l~f~s~d---YLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~--------g~e~al~~ 104 (383)
T d1bs0a_ 36 DDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL--------GYSRALLF 104 (383)
T ss_dssp TTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH--------TCSEEEEE
T ss_pred CCeEEEEEEccc---ccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc--------CCCceEEe
Confidence 467789999887 67777899999999999875211 12233344689999999999 45688999
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhc---CCceEEEEeCCC
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALAD---ENTVALVIINPG 193 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~ 193 (422)
++++.|+..++.++.+++|.|++....|..+....+..+.+++.++. .|++.+++.+. ++++++++..+.
T Consensus 105 ~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~e~v~ 177 (383)
T d1bs0a_ 105 ISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVF 177 (383)
T ss_dssp SCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBC
T ss_pred cccchhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999888888877764 36777777653 356677777889
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
+.+|.+.| +++|.++|++||+++++||+|+...++..........+. ...+++.+++|.++.+| |++.++
T Consensus 178 s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~G---g~v~~~--- 247 (383)
T d1bs0a_ 178 SMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVSG---AAVLCS--- 247 (383)
T ss_dssp TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSCC---EEEEEC---
T ss_pred CCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCC-ccccccccccccccccc---cccccc---
Confidence 99999965 666777888999999999999987665433322223332 23467789999998887 888875
Q ss_pred CcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE
Q 014603 274 GILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF 350 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 350 (422)
.++.+.++.... ++...++....++.++++.......+..+.++.++..++.+.|+++ ++. . .+..+.+
T Consensus 248 -----~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~-~-~~~~s~I 319 (383)
T d1bs0a_ 248 -----STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFT-L-ADSCSAI 319 (383)
T ss_dssp -----HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE-E-CSCCSSB
T ss_pred -----hhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCc-c-CCCCCCE
Confidence 456777765432 2334444555565566654333455667788889999999999987 444 2 2333333
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 351 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
+.+.+... ..+.++...| .++||.+.+..++.. ...+|++++ +++++|+++++.|..+
T Consensus 320 i~v~~g~~-----~~a~~~~~~L-~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 320 QPLIVGDN-----SRALQLAEKL-RQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp CCEEEESH-----HHHHHHHHHH-HHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCH-----HHHHHHHHHH-HHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 33334321 0244555666 556999988766543 346999998 7999999999998764
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=4.2e-28 Score=225.68 Aligned_cols=324 Identities=12% Similarity=0.146 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCC---------CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYS---------STVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLAR 132 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~---------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~ 132 (422)
..++++++++.+..+......|. .++-...+++.+|+++ +.+++++|+|+++|+.+++.++++
T Consensus 13 ~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~--------g~e~~~~t~g~t~a~~~~~~al~~ 84 (364)
T d2e7ja1 13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL--------GCDVARVTNGAREAKFAVMHSLAK 84 (364)
T ss_dssp CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT--------TSSEEEEESSHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh--------CcCEEEEECcHHHHHHHHHHHHhC
Confidence 34578888887753321110111 1123456788899988 347899999999999999999999
Q ss_pred CCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-----CceEEEEeCCCCCcccccCHHHHHH
Q 014603 133 PGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-----NTVALVIINPGNPCGNVYTYQHLQK 207 (422)
Q Consensus 133 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-----~~~~i~i~~p~nptG~~~~~~~l~~ 207 (422)
+||+|+++.++|++....++..|.+++.+|.+...++.+|++.+++.+++ +++++++++|+||||.+.+ +++
T Consensus 85 ~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~ 161 (364)
T d2e7ja1 85 KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKK 161 (364)
T ss_dssp TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHH
T ss_pred CCcEEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chh
Confidence 99999999999998888889999999999987766788999999988743 3467889999999999964 788
Q ss_pred HHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh
Q 014603 208 IAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS 287 (422)
Q Consensus 208 i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
|+++|++||+++++|++|+. +....++..++.| ++++|++|+++++| ++||++.++. +.+.+..
T Consensus 162 I~~ia~~~~i~livD~a~~~----g~~~~~~~~~g~D---~~~~S~~K~~~~~g-~~g~l~~~~~--------~~~~~~~ 225 (364)
T d2e7ja1 162 IAKVCSEYDVPLLVNGAYAI----GRMPVSLKEIGAD---FIVGSGHKSMAASG-PIGVMGMKEE--------WAEIVLR 225 (364)
T ss_dssp HHHHHHTTTCCEEEECTTTB----TTBCCCHHHHTCS---EEEEEHHHHSSCCS-SCEEEEECTT--------TTTTTTC
T ss_pred heeccccccchhhccccchh----hhhhhcccccccc---eeeeccccccCCCC-CEEEEEECHH--------HHHHHHh
Confidence 99999999999999999975 2222344444443 88899999987776 6899988642 2222211
Q ss_pred hh--------h-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCceEEEEecCc
Q 014603 288 FL--------N-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP-KKPEGSMFVMVKLNY 357 (422)
Q Consensus 288 ~~--------~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~~~~~~ 357 (422)
.. . ...........++.+.++.. .+.++...+.+ ++.+++.+.|+++ ++... ..|......+...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~ 302 (364)
T d2e7ja1 226 RSEKYKNKEVELLGCTARGATIITLMASFPHV-RERIKRWDEEV-EKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEV 302 (364)
T ss_dssp BCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH-HHHGGGHHHHH-HHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHH
T ss_pred hccccCcccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccc
Confidence 10 0 11122223333333444321 12233333333 4555677777776 33211 123333333333322
Q ss_pred cc--ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-ccChHHHHHHHHHHHHHHHHh
Q 014603 358 SL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 358 ~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~~~~~~l~~~~~~l~~~~~~~ 418 (422)
.. ..............+...++... .++....+|++. +.+++++++++++|++++++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 303 LYEISKKAKGGRFFLYRELKSRKIHGI---KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp HHHHHHHSSSGGGHHHHHHHHTTEECS---CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHhhccchHHHHHHHhcCCcee---cCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 10 00000111223334455566532 223356677775 478999999999999999886
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=7.2e-27 Score=218.29 Aligned_cols=334 Identities=15% Similarity=0.130 Sum_probs=234.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+|+.+|||++.+ |.++..+|.+++++.+++++....... ....+.++++.+++++ ..+.++++
T Consensus 43 dG~~~l~f~s~d---YLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~--------g~e~al~~ 111 (401)
T d1fc4a_ 43 DGSHVINFCANN---YLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL--------GMEDAILY 111 (401)
T ss_dssp TSCEEEECCCSC---TTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH--------TCSEEEEE
T ss_pred CCCEEEEEEccc---cccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh--------cCCceEEe
Confidence 578899998887 667778999999999998753221111 2334668999999998 45789999
Q ss_pred cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHh---hc---CCceEEEEe
Q 014603 117 LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEAL---AD---ENTVALVII 190 (422)
Q Consensus 117 ~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~---~~---~~~~~i~i~ 190 (422)
++|+.|+..++.++++++|.|++....|.++...+...+.++..++.. |.+.+++. .+ ..+.++++.
T Consensus 112 ~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~~liv~e 184 (401)
T d1fc4a_ 112 SSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp SCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred cchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChHHHHHHHHHhhhcccCceEEEEc
Confidence 999999999999999999999999999999999888888888776542 44444443 32 133444444
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCC-CCeEEEecCccccCCCCceeEEEEe
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSI-VPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
...+..|... +++++.++|++||+++|+||+|+.+.++.........++.. +..++++|++|.+++ ...|++.+
T Consensus 185 gv~s~~G~~~---~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg--~~Gg~v~g 259 (401)
T d1fc4a_ 185 GVFSMDGVIA---NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGG--ASGGYTAA 259 (401)
T ss_dssp SEETTTTEEC---CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCS--SSCEEEEE
T ss_pred CCCCCCCchh---hhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeeccccccc--CCcccccC
Confidence 4456677764 48888899999999999999999877754433222222221 234889999999743 22388877
Q ss_pred eCCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 014603 270 SDPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE 346 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 346 (422)
+ .++++.++.... ++..+++....++..+++.. ...++++++++++.+++++.+... ++. . ...
T Consensus 260 ~--------~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~--~~~~~~~~~l~~~~~~~~~~l~~~-g~~-~-~~~ 326 (401)
T d1fc4a_ 260 R--------KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAA-GFT-L-AGA 326 (401)
T ss_dssp C--------HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHT-TCC-B-CCS
T ss_pred C--------HHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc--ccCHHHHHHHHHHHHHHHhhhccc-CCc-c-CCC
Confidence 5 467777764432 33355555666666666542 234567888999999999999887 554 2 222
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 347 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+..+.+.+.... ...++...| .++||.+.+..++.. ...+|++++ +++++|+++++.|+++.+++
T Consensus 327 ~~pIv~v~~~~~~-----~a~~~~~~L-~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 327 DHAIIPVMLGDAV-----VAQKFAREL-QKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp SSSEEEEEEECHH-----HHHHHHHHH-HHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCHH-----HHHHHHHHH-HHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344444443221 234566665 566999987655443 345999997 79999999999999998876
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.96 E-value=5.5e-27 Score=216.60 Aligned_cols=331 Identities=17% Similarity=0.143 Sum_probs=237.1
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEec
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN------CYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTL 117 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~ 117 (422)
+..++||++++ |.++..+|+++++..+.++..... -++....+.++++.+|+|+ ..+..++++
T Consensus 44 ~~~~~~FsSnd---YLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~--------g~e~all~~ 112 (396)
T d2bwna1 44 KQDITVWCGND---YLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH--------QKEAALVFS 112 (396)
T ss_dssp EEEEEECSCSC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT--------TCSEEEEES
T ss_pred CeEEEEEEccc---ccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh--------CCCceeeee
Confidence 46789999998 777888999999999998752211 2222334679999999998 446788889
Q ss_pred CHHHHHHHHHHHh--cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh---cC-CceEEEEeC
Q 014603 118 GCTQAIEVILTVL--ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALA---DE-NTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~---~~-~~~~i~i~~ 191 (422)
+|..|+..++.++ ..++|.|+.+...|.++...++..+.+++.++.+ |.+.+++.+ .+ +.+.+++..
T Consensus 113 sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~eg 185 (396)
T d2bwna1 113 SAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFES 185 (396)
T ss_dssp CHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEES
T ss_pred cchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeEEEEe
Confidence 9999999999887 4688999999999999999999999998887642 445554433 33 345555556
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
..+..|.+.| +.+|+++|++||+++++||+|+...++..+......++. ....++++||+|.||..| |++.++
T Consensus 186 vySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~ 259 (396)
T d2bwna1 186 VYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS 259 (396)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC
T ss_pred eccCcccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchh
Confidence 6788999865 777788888999999999999987765443333333322 223589999999999888 998875
Q ss_pred CCCCcccchhHHHHHHhhhh---hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 014603 271 DPNGILQDSGIVDSIKSFLN---ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG 347 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 347 (422)
+++++.++.... ++..+++....++.++++.......++.+.++..+.+++++.|... ++. . .+..
T Consensus 260 --------~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~-~-~~~~ 328 (396)
T d2bwna1 260 --------ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMP-I-IDHG 328 (396)
T ss_dssp --------HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCCS
T ss_pred --------HHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCC-c-CCCC
Confidence 467777765542 2334455555556555654333344556777888888888888876 555 2 2333
Q ss_pred ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC---CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 348 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
+..+.+.+.... ...++..++++++||.+.+..++.. ...+||+++ ++++||+++++.|+++
T Consensus 329 spIvpv~ig~~~-----~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 329 SHIVPVVIGDPV-----HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp SSCEEEECCCHH-----HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHH-----HHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 444445554321 2455666777778999988777654 357999997 7999999999999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2.4e-25 Score=207.77 Aligned_cols=336 Identities=14% Similarity=0.096 Sum_probs=217.0
Q ss_pred eeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCC-------CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHH
Q 014603 48 IPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSST-------VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCT 120 (422)
Q Consensus 48 i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-------~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~ 120 (422)
|.|+++..+ ++|+.+.+++.+.+.+...+..... ..+.+.|+++++++ ++++++|++++|+|
T Consensus 3 iyld~a~~~-----~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~------~~~~~~i~~~~~~T 71 (376)
T d1eg5a_ 3 VYFDNNATT-----RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL------GVSPSEIFFTSCAT 71 (376)
T ss_dssp EECBTTTCC-----CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH------TSCGGGEEEESCHH
T ss_pred EEEECcccc-----cCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHc------CCCCCcEEEECCHH
Confidence 677776644 6778999999998876322211110 12446688999999 57899999999999
Q ss_pred HHHHHHHHH----hcCCCCEEEecCCCccchH---HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 121 QAIEVILTV----LARPGANILLPRPGFPYYE---ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 121 ~a~~~~~~~----l~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
++++.++.+ ...+|+.|++....|+... ..++..|.+++.+|++. ++.+|+++++++++++++++++++++
T Consensus 72 ~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~--~~~id~~~l~~~i~~~t~lv~is~v~ 149 (376)
T d1eg5a_ 72 ESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAAN 149 (376)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBC
T ss_pred HHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC--CCeECHHHHHHhcCCCceEEEEECCc
Confidence 999998864 3567889998888886553 44456799999999864 45699999999999999999999999
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
|+||...+.+++.++++. +..++++++|.+|+. |..+..+..++.| ++++|++|++|.+|..+.| .+...
T Consensus 150 ~~tG~~~~~~~i~~~~~~-~~~~~~~~vD~~q~~----g~~~~d~~~~~~D---~~~~s~~K~~gp~G~~~l~--~~~~~ 219 (376)
T d1eg5a_ 150 NEVGTIQPVEDVTRIVKK-KNKETLVHVDAVQTI----GKIPFSLEKLEVD---YASFSAHKFHGPKGVGITY--IRKGV 219 (376)
T ss_dssp TTTCBBCCHHHHHHHHHH-HCTTCEEEEECTTTT----TTSCCCCTTTCCS---EEEEEGGGGTSCTTCEEEE--ECTTS
T ss_pred cccceeeeehhhhhhhhh-cccCceeEEEeeecc----ccccccccccCcc---ceecccceeecCCCceeEE--eccCc
Confidence 999999876666555442 334899999999986 4445556566554 8999999998888865444 43221
Q ss_pred CcccchhHHHHHHhhhhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCceEEE
Q 014603 274 GILQDSGIVDSIKSFLNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCP-KKPEGSMFVM 352 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~g~~~~ 352 (422)
... |.+...-.......+..+.............. ...............+++.+.|+........ ..........
T Consensus 220 ~~~--p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 296 (376)
T d1eg5a_ 220 PIR--PLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLS 296 (376)
T ss_dssp CCC--CSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEE
T ss_pred ccC--CcccCCCCcccccCCcccchhhhhHHHHhhcc-ccchhhhhhhhhhhhhhhccccccccccccccccccccceee
Confidence 100 10000000000111233334433333333321 2223444555566667777777765332211 0111122333
Q ss_pred EecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-------------------CCeEEEEec--cChHHHHHHHHHH
Q 014603 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KDWLRITFA--VEPSALEDGLGRM 411 (422)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~l~~~~~~l 411 (422)
+.++.. +...+.. .+.++||.+++|..|.. .+.+|+|++ ++++||+++++.|
T Consensus 297 ~~~~~~------~~~~~~~-~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L 369 (376)
T d1eg5a_ 297 VSFPNI------RGSTLQN-LLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKI 369 (376)
T ss_dssp EECTTC------CHHHHHH-HHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHH
T ss_pred eccCCC------CHHHHHH-HHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 445432 4555544 45788999998876532 246999998 6899999999999
Q ss_pred HHHHH
Q 014603 412 KAFYD 416 (422)
Q Consensus 412 ~~~~~ 416 (422)
++++.
T Consensus 370 ~~iv~ 374 (376)
T d1eg5a_ 370 EEILS 374 (376)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99886
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2.2e-26 Score=211.51 Aligned_cols=329 Identities=15% Similarity=0.099 Sum_probs=210.9
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHH
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVI 126 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~ 126 (422)
+|||.....+ .++|++++||.+.... ...|++.+...+|++.+|++++ .+++++++|||+|+..+
T Consensus 1 ~~~~~~~~~t-----~p~p~v~~A~~~a~~g--~~~yg~~p~~~~le~~lA~~~G--------~~~~~~~~sGt~A~~~a 65 (343)
T d1m6sa_ 1 MIDLRSDTVT-----KPTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQVS 65 (343)
T ss_dssp CEECSCGGGC-----CCCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHH
T ss_pred CcccccccCC-----CCCHHHHHHHHhhhcC--CcccCCCHHHHHHHHHHHHHHC--------CCeEEEeCCHHHHHHHH
Confidence 4777655533 3468999999775432 3468777778999999999982 45789999999999999
Q ss_pred HHHhcCCCCEEEecCCCccchHH---HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC------CceEEE-EeCCCCCc
Q 014603 127 LTVLARPGANILLPRPGFPYYEA---RATHSHLEVRHFDLLPAKGWEVDLDAVEALADE------NTVALV-IINPGNPC 196 (422)
Q Consensus 127 ~~~l~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~-i~~p~npt 196 (422)
+.++.++||.+++..+.|..+.. .+...+.....++. .....|++.+++.+.. ++..++ .+.++++.
T Consensus 66 l~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (343)
T d1m6sa_ 66 IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSG 142 (343)
T ss_dssp HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECE---ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTT
T ss_pred HHHHhccCCceeccccccceeeecccccccccceeecccc---ccCccCHHHHHHhhhhhhcccccccccccccccccCC
Confidence 99999999999999998865432 33333444444433 2345688888887754 334444 44557889
Q ss_pred ccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcc
Q 014603 197 GNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGIL 276 (422)
Q Consensus 197 G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~ 276 (422)
|.+++.+++++|+++|+++|+++++|+++..+.............. . ....+.+.+| +..|.+.|++...
T Consensus 143 ~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~--~~~g~~~~~~~~~------ 212 (343)
T d1m6sa_ 143 GRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG-Y-ADSVMFCLSK--GLCAPVGSVVVGD------ 212 (343)
T ss_dssp SBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH-T-CSEEEEESSS--TTCCSSCEEEEEC------
T ss_pred ceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcc-c-cccccccccc--ccccccccccccc------
Confidence 9999999999999999999999999999986543221111111111 1 1233333333 3445556777664
Q ss_pred cchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEec
Q 014603 277 QDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKL 355 (422)
Q Consensus 277 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~ 355 (422)
++.+........ ...+.+.....++...... .......+...++...+.+.+.++.+.. ...|..++++++.+
T Consensus 213 --~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 286 (343)
T d1m6sa_ 213 --RDFIERARKARKMLGGGMRQAGVLAAAGIIAL---TKMVDRLKEDHENARFLALKLKEIGYSV-NPEDVKTNMVILRT 286 (343)
T ss_dssp --HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHH---HHSSTTHHHHHHHHHHHHHHHHHHTCBC-CGGGCCSSEEEEEC
T ss_pred --HHHHhhhHhhCcccccccchhHHHHHhhhhhh---hhhHHHHHHHHHHHHHhhhHHHHhccCc-cCCCCCceEEEEEe
Confidence 345444444432 2222222222222222211 1112222334444445555555554444 33566677888887
Q ss_pred CcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 356 NYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+... ....++...| +++||.+.|.. .+++|++++ +++++|++++++|+++++++
T Consensus 287 ~~~~----~~a~~l~~~L-~~~Gi~v~~~~----~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 287 DNLK----VNAHGFIEAL-RNSGVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp TTSS----SCHHHHHHHH-HHHTEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCc----ccHHHHHHHH-HHCCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6432 1466777766 56699998753 578999987 78999999999999999986
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.2e-25 Score=207.84 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=227.5
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCC-CCCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLS-PDDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
+.+++|+++|....-+ +.++ ...+.+.|+.++++++ ++ +..|+++.|||+++++++..++.+|++++
T Consensus 29 ~~~~~Vl~am~~~~i~----HRs~~f~~i~~ea~~~l~~llg------~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~ 98 (388)
T d1h0ca_ 29 NLPPRIMAAGGLQMIG----SMSKDMYQIMDEIKEGIQYVFQ------TRNPLTLVISGSGHCALEAALVNVLEPGDSFL 98 (388)
T ss_dssp CCCHHHHHHHTCCCCC----TTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEE
T ss_pred CCCHHHHHHhCcCCCC----CCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEcCcHHHHHHHHHHHhhccCCcee
Confidence 5678999888543221 2111 2336778888888883 33 33688999999999999999999999999
Q ss_pred ecCCCccchHH--HHhhCCCeEEEeeccCCCCcccCHHHHHHhh-cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 139 LPRPGFPYYEA--RATHSHLEVRHFDLLPAKGWEVDLDAVEALA-DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 139 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
+...++++... .+...+..+..+... .+...|.+.+++.+ +.+++++++++.+|.||.+. ++++|.++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~---pi~~i~~~~~~~ 173 (388)
T d1h0ca_ 99 VGANGIWGQRAVDIGERIGARVHPMTKD--PGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQ---PLDGFGELCHRY 173 (388)
T ss_dssp ECBSSHHHHHHHHHHHHHC--CBCCBCC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC---CCTTHHHHHHTT
T ss_pred eecccceeeeeccccccccccccccccC--CccccchHHHHHHhccCCcceEEEeeeeecccccc---CHHHHHHHhhcc
Confidence 99988876533 334445555444443 34457888876654 45788999999999999994 578888899999
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhh-------
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSF------- 288 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------- 288 (422)
|+++++|.+++. |..+.++...+.| +++.|.+|++++++ .+|+++.+ +...+.+...
T Consensus 174 g~~~~vD~~qs~----g~~~~d~~~~~~D---~~~~s~~K~~~gp~-g~~~~~~~--------~~~~~~~~~~~~~~~~~ 237 (388)
T d1h0ca_ 174 KCLLLVDSVASL----GGTPLYMDRQGID---ILYSGSQKALNAPP-GTSLISFS--------DKAKKKMYSRKTKPFSF 237 (388)
T ss_dssp TCEEEEECTTTT----TTSCCCTTTTTCS---EEEEESSSTTCCCT-TCEEEEEC--------HHHHHHHTTCSSCCSCS
T ss_pred cccceecccccc----ccccccccccccc---eecccccccccCCC-ceEEEeec--------HHHHHhhhhcccccccc
Confidence 999999999987 4444555565554 88889999976543 25666654 2333333211
Q ss_pred -----------------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCC--Cc
Q 014603 289 -----------------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK-KPE--GS 348 (422)
Q Consensus 289 -----------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~--~g 348 (422)
....++++.....+..++++...+..++...++..++.+.+++.++.. ++.... .+. ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~ 316 (388)
T d1h0ca_ 238 YLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLP 316 (388)
T ss_dssp TTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCT
T ss_pred ccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc-CcccccCCHHHcCC
Confidence 012235666666677777765555667888888888888999888876 333121 111 12
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEE-ec--cChHHHHHHHHHHHHHHHHhcccC
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT-FA--VEPSALEDGLGRMKAFYDRHAKKQ 422 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis-~~--~~~~~l~~~~~~l~~~~~~~~~~~ 422 (422)
..+.+.++.. .+..++...+++++||.+..|..+...+.|||| ++ ++.+++++++++|++++++++||+
T Consensus 317 ~i~~~~~p~~-----~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 317 TVTTVAVPAG-----YDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp TEEEEECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred eEEEEECCCC-----CCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 2445566542 267788888888889999999876667899999 65 678999999999999999999885
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=1.1e-23 Score=193.20 Aligned_cols=329 Identities=12% Similarity=0.062 Sum_probs=211.1
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHH
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIE 124 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~ 124 (422)
++.+||.+.++. +.+|+|++||.++... ....|.+.....++|+.++++++ .+..+++|+|||+|++
T Consensus 2 ~~~~~f~s~n~~-----g~~P~v~~A~~~a~~~-~~~~~~~~~~~~~l~~~la~~~g-------~~~~v~f~~sGt~An~ 68 (345)
T d1v72a1 2 PPALGFSSDNIA-----GASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFE-------RDVEVFLVPTGTAANA 68 (345)
T ss_dssp CCCCBCSCGGGC-----CCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHT-------SCCEEEEESCHHHHHH
T ss_pred CCCcCcCCCCCC-----CCCHHHHHHHHHHhcc-CccccCCCHHHHHHHHHHHHHHC-------CCcEEEECCchHHHHH
Confidence 567899976643 5689999999987644 23467666778899999999994 2357999999999999
Q ss_pred HHHHHhcCCCCEEEecCCCccchH---HHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC------ce-EEEEeCCCC
Q 014603 125 VILTVLARPGANILLPRPGFPYYE---ARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN------TV-ALVIINPGN 194 (422)
Q Consensus 125 ~~~~~l~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~-~i~i~~p~n 194 (422)
.++..++.+++.+++....+.... ......+..+..++ +..+...+++.+++.+.+. +. .++...+.|
T Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
T d1v72a1 69 LCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV--DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQAT 146 (345)
T ss_dssp HHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEEC--CCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC
T ss_pred HHHHHHHhcCCccccccccceeeechhhHHHhcCccccccc--ccccccccHHHhhhhhcccccccccccceeeeeeccc
Confidence 999999999988888877765432 22233444444433 3344567899998877542 22 345556678
Q ss_pred CcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC-CCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 195 PCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS-IVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 195 ptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
+.|...+.++++++.++|+++|+++++|+++....+..... .+..... ........+..|.. ... .+......
T Consensus 147 ~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-- 220 (345)
T d1v72a1 147 EVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC-SPAEMTWKAGVDALSFGATKNG-VLA--AEAIVLFN-- 220 (345)
T ss_dssp TTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC-CTTTTTGGGTCCEEEECCGGGT-CSS--CEEEEESS--
T ss_pred cccccccchhhhhHHHHHHhcCceeeecccccceecccccc-CHHHhhccccccccccCccccc-ccc--ccccccch--
Confidence 88999999999999999999999999999997644322111 1111111 11124444445542 222 23333322
Q ss_pred CcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEE
Q 014603 274 GILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVM 352 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~ 352 (422)
............ ...+.+.....+.. ......+....+...+..++.+.+.+.+.+++++. +..|..+++++
T Consensus 221 -----~~~~~~~~~~~~~~~~~~~~~~~aa~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~p~~~niv~ 293 (345)
T d1v72a1 221 -----TSLATEMSYRRKRAGHLSSKMRFLSAQ-IDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVE-VLGGTEANILF 293 (345)
T ss_dssp -----GGGHHHHHHHHHHTTCCCSSTHHHHHH-HHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEE-EESCCCSSEEE
T ss_pred -----hhhhhhccccccccccccchhhHHhhh-hHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcE-eccCCCccEEE
Confidence 122222222222 22222222222222 22212223445556666777788888999998887 44677788888
Q ss_pred EecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
+.++. +....|+ ++|+.|.++. ..++.+|++++ +++|+|+.+++.|+++
T Consensus 294 ~~~~~----------~~~~~L~-~~gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 294 CRLDS----------AMIDALL-KAGFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp EEECH----------HHHHHHH-HTTCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred EEcCH----------HHHHHHH-HcCCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 87742 3455554 5598875543 23679999997 7899999999998864
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.6e-22 Score=185.47 Aligned_cols=336 Identities=14% Similarity=0.097 Sum_probs=223.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
+|+.+|||..|......+ ..+|++.+|+.+++.+..... +.......++.+.++++. ..+.++++++|++
T Consensus 39 dG~~ylD~~~g~~~~~lG-h~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~sGse 109 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQG-HCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--------NYHKVLPMNTGVE 109 (404)
T ss_dssp TCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH--------TCSEEEEESSHHH
T ss_pred CCCEEEEecCCHHHHhhc-CCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc--------cccccccccCccc
Confidence 688999999886553333 367899999999998643221 112223345555565554 4578999999999
Q ss_pred HHHHHHHHhc----------CCCCEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCCcccCHHHHHH
Q 014603 122 AIEVILTVLA----------RPGANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKGWEVDLDAVEA 178 (422)
Q Consensus 122 a~~~~~~~l~----------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d~~~l~~ 178 (422)
|++.+++... .....++....+|++....+..... .+..+|. .|++.+++
T Consensus 110 A~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~ 182 (404)
T d2byla1 110 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALER 182 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHHH
T ss_pred cchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHHH
Confidence 9999987642 1235788788888765333322211 1112221 37888999
Q ss_pred hhcCCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 179 LADENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 179 ~~~~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
.+.++..+.++..| ....|. .++++.+++|.++|++||+++|+||++.++..+|... ....++..++++ +++|.
T Consensus 183 ~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~-a~~~~gv~PDi~---~~gK~ 258 (404)
T d2byla1 183 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL-AVDYENVRPDIV---LLGKA 258 (404)
T ss_dssp HHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEE---EECGG
T ss_pred hcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccc-hhhhcCCCCCEE---EECch
Confidence 88776777777888 444564 5778889999999999999999999999987777543 334444444444 45799
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKE 335 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 335 (422)
++..++++|.++++ +++.+.+.... ..+.+.++++++++.+.|+...++ +..++.+++.+++.+.|++
T Consensus 259 l~gG~~p~~av~~~--------~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~ 327 (404)
T d2byla1 259 LSGGLYPVSAVLCD--------DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMK 327 (404)
T ss_dssp GGTTSSCCEEEEEC--------HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHT
T ss_pred hhCCCccceeeeec--------hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhc---CchhhhhHhhHHHHHHHHh
Confidence 65444899999986 35655554443 234577899999999999874432 3444556666777777776
Q ss_pred CCCCCCCC-CCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHH
Q 014603 336 IPCITCPK-KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMK 412 (422)
Q Consensus 336 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~ 412 (422)
+.. ..+. ....|.+..+.+.... .....++..++ .++|+++.+.. .+.+|++++ +++++|++++++|+
T Consensus 328 l~~-~~i~~vRg~Gl~~~i~~~~~~---~~~~~~~~~~l-~~~Gvl~~~~~----~~~i~l~PpL~it~~~id~~~~~l~ 398 (404)
T d2byla1 328 LPS-DVVTAVRGKGLLNAIVIKETK---DWDAWKVCLRL-RDNGLLAKPTH----GDIIRFAPPLVIKEDELRESIEIIN 398 (404)
T ss_dssp SCT-TTEEEEEEETTEEEEEECCCS---SCCHHHHHHHH-HHTTEECEEEE----TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred hcc-ccceeeeecccEEEEEEecCC---chhHHHHHHHH-HhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHH
Confidence 521 1110 1223555555554321 12455666665 46699998732 468999987 78999999999999
Q ss_pred HHHHHh
Q 014603 413 AFYDRH 418 (422)
Q Consensus 413 ~~~~~~ 418 (422)
+++++|
T Consensus 399 ~al~~f 404 (404)
T d2byla1 399 KTILSF 404 (404)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 999764
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.90 E-value=2.6e-22 Score=188.78 Aligned_cols=329 Identities=11% Similarity=0.043 Sum_probs=212.9
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC-CC----C--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC-YS----S--TVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-y~----~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
.+++|+|+++..+ ++|..+.+++.+.+.+...+. .. . ....++.|+.+|+++ ++++++|++|
T Consensus 25 ~~~~iYLd~as~g-----~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~ll------ga~~~ei~~~ 93 (404)
T d1qz9a_ 25 PEGVIYLDGNSLG-----ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI------GARDGEVVVT 93 (404)
T ss_dssp CTTCEECCTTTSC-----CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT------TCCTTSEEEC
T ss_pred CCCCEEcCCcccc-----cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHh------CCCCCcEEEe
Confidence 4678999998855 667889999999876532111 10 0 122457888888888 5789999999
Q ss_pred cCHHHHHHHHHHHh------cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEe
Q 014603 117 LGCTQAIEVILTVL------ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVII 190 (422)
Q Consensus 117 ~g~~~a~~~~~~~l------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~ 190 (422)
+++|++++.++... ..+++.|++.+..|++........+.++...+... ....+++.+++.+++++++++++
T Consensus 94 ~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~T~lV~i~ 171 (404)
T d1qz9a_ 94 DTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL--RLVDSPEELPQAIDQDTAVVMLT 171 (404)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE--EEESSGGGHHHHCSTTEEEEEEE
T ss_pred cCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceec--cccccchhHHHhcCCCceEEEEe
Confidence 99999998876532 35788888888777654333333332222222211 12357788999999999999999
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
+.+|.||..+| +++|+++|+++|+.+++|.+|+. |.....+...+.+ +++.|.+|+++.+.-.+|+++.+
T Consensus 172 ~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~----g~~~~~~~~~~~d---~~~~s~~K~~~~~~g~~g~~~~~ 241 (404)
T d1qz9a_ 172 HVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA----GAVPVDLHQAGAD---YAIGCTYKYLNGGPGSQAFVWVS 241 (404)
T ss_dssp SBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSCCCHHHHTCS---EEEECSSSTTCCCTTCCCEEEEC
T ss_pred cccccccceec---HHHHhccccccccceeEEeeccc----cccccccccccce---EEEEechhhcccCCceEEEEEec
Confidence 99999999965 77888889999999999999987 4444555555554 78889999864433335666664
Q ss_pred CCCCcccchhHHHHHHh------------------------hhhhccCcchHHHHHHHHHHh---hchHHHHHHHHHHHH
Q 014603 271 DPNGILQDSGIVDSIKS------------------------FLNISSDPATFIQGAVPQILE---KTEEEFFSKITDILR 323 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~ 323 (422)
+. +.+.+.. .....++++..........+. ........+....+.
T Consensus 242 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 313 (404)
T d1qz9a_ 242 PQ--------LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALT 313 (404)
T ss_dssp TT--------TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hh--------hhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhH
Confidence 32 1111110 001112333344443333333 222344444444555
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCC----ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec-
Q 014603 324 ETADICCDRLKEIPCITCPKKPEG----SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA- 398 (422)
Q Consensus 324 ~~~~~l~~~L~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~- 398 (422)
.....+...+...+++.+. .|.. +.++.+..+ ++.++...| .++||.+... .++.||||++
T Consensus 314 ~~~~~l~~~~~~~~~~~i~-~p~~~~~r~~~vsf~~~--------~~~~v~~~L-~~~gi~~~~r----~~~~lRiS~~h 379 (404)
T d1qz9a_ 314 DLFIELVEQRCAAHELTLV-TPREHAKRGSHVSFEHP--------EGYAVIQAL-IDRGVIGDYR----EPRIMRFGFTP 379 (404)
T ss_dssp HHHHHHHHHHHTTSCCEEC-SCSSGGGBCSEEEEECT--------THHHHHHHH-HTTTEECEEE----TTTEEEEECCT
T ss_pred HHHHHHHHhhccCCCEEEE-CCCCccceeeEEEEecC--------CHHHHHHHH-HHCCCEEeec----CCCeEEEECCC
Confidence 5555555566666777743 4432 234455554 466676666 6779875321 2478999984
Q ss_pred --cChHHHHHHHHHHHHHHHH
Q 014603 399 --VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 399 --~~~~~l~~~~~~l~~~~~~ 417 (422)
++++||+++++.|++++++
T Consensus 380 ~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 380 LYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 6899999999999999976
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.3e-21 Score=184.07 Aligned_cols=357 Identities=15% Similarity=0.159 Sum_probs=221.7
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ ..+|++.+++.+++......... ....+.+..+++.+.+..+ +...+.++++++|++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~ai~~q~~~~~~~~~~--~~~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGse 112 (425)
T d1sffa_ 37 VEGREYLDFAGGIAVLNTG-HLHPKVVAAVEAQLKKLSHTCFQ--VLAYEPYLELCEIMNQKVP-GDFAKKTLLVTTGSE 112 (425)
T ss_dssp TTCCEEEESSHHHHTCTTC-BTCHHHHHHHHHHTTTCSCCCTT--TEECHHHHHHHHHHHHHSS-CSSCEEEEEESSHHH
T ss_pred CCCCEEEEcCcCHHhhccc-CCcHHHHHHHHHHHhhcCCcccc--cccCcHHHHHHHHHHhhhh-hcccceeeeeccccc
Confidence 3689999999885443222 36799999999999763221111 1122344445555554332 122457999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhh-CCC-------------eEEEeecc--CCCCccc----CHHHHHH-
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATH-SHL-------------EVRHFDLL--PAKGWEV----DLDAVEA- 178 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~-~g~-------------~~~~~~~~--~~~~~~~----d~~~l~~- 178 (422)
|++.+++... ....+|+....+||++...+.. .+. .....+.. ..+.... +.+.+..
T Consensus 113 A~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (425)
T d1sffa_ 113 AVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 192 (425)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHh
Confidence 9999987642 1236899999999987654443 221 11111110 0000000 0111111
Q ss_pred hhcCCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccc
Q 014603 179 LADENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKR 256 (422)
Q Consensus 179 ~~~~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~ 256 (422)
....+..+.++..| +...|. .++++.+++|.++|++||+++|+||+++++.++|... ....++..+++++ ++|.
T Consensus 193 ~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~-a~~~~gv~PDi~~---~gK~ 268 (425)
T d1sffa_ 193 DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-AMEQMGVAPDLTT---FAKS 268 (425)
T ss_dssp TCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGTTSCCSEEE---ECGG
T ss_pred cccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhh-HHHhcCCCcccee---cccc
Confidence 12234567777888 444565 5788999999999999999999999999877776543 3334444444444 5799
Q ss_pred cCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhh
Q 014603 257 WIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 257 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
+ ..|+++|.++++ +++++.+.... ..+.+.++++++++.+.|+...+ ...++..+.-...++.+.+.++
T Consensus 269 l-~gG~P~~av~~~--------~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~ 339 (425)
T d1sffa_ 269 I-AGGFPLAGVTGR--------AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAE 339 (425)
T ss_dssp G-GTSSCCEEEEEE--------HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCcceEEEEEc--------HHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHh
Confidence 6 568999999987 45666554433 24567889999999999987543 3444444444555566666666
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCC---HHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLG 409 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~ 409 (422)
+.|.+. . ....|.+..+.+.........+ ...+..++ .++|+++.++... .+.+|++++ +++++|+++++
T Consensus 340 ~~~~v~-~-vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l-~~~Gvl~~~~g~~--~n~i~~~PpL~it~~eid~~l~ 414 (425)
T d1sffa_ 340 KHPEIG-D-VRGLGAMIAIELFEDGDHNKPDAKLTAEIVARA-RDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLE 414 (425)
T ss_dssp TCTTEE-E-EEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHH-HHTTEECEEESTT--SCEEEECCCTTCCHHHHHHHHH
T ss_pred hCCceE-E-EEccccEEEEEEeccCccCCccHHHHHHHHHHH-HHCCCEEeccCCC--CCEEEEECCCCCCHHHHHHHHH
Confidence 665433 1 2233556566553221111111 23344444 5669998875422 478999987 79999999999
Q ss_pred HHHHHHHHhcc
Q 014603 410 RMKAFYDRHAK 420 (422)
Q Consensus 410 ~l~~~~~~~~~ 420 (422)
++++++++++|
T Consensus 415 ~l~~al~eikk 425 (425)
T d1sffa_ 415 IISQCFDEAKQ 425 (425)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999998764
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.9e-21 Score=182.59 Aligned_cols=344 Identities=15% Similarity=0.093 Sum_probs=219.2
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|+.+|||..|......+ .-+|+|.+++.+++.......+.. ...+. ...+++.+.... +...+.+++++++++
T Consensus 40 ~dG~~ylD~~~g~~~~~lG-h~~p~i~~Ai~~q~~~~~~~~~~~-~~~~~-~~~l~~~l~~~~--~~~~~~v~f~~sGse 114 (429)
T d1s0aa_ 40 SDGRRLVDGMSSWWAAIHG-YNHPQLNAAMKSQIDAMSHVMFGG-ITHAP-AIELCRKLVAMT--PQPLECVFLADSGSV 114 (429)
T ss_dssp TTSCEEEESSTTTTTCTTC-BSCHHHHHHHHHHHHHCSCCCCSS-EECHH-HHHHHHHHHHHS--CTTCCEEEEESSHHH
T ss_pred CCCCEEEECcccHHHHhhc-CCcHHHHHHHHHHHHhcCCcccCC-ccchH-HHHHHHHHHhhh--ccCcceeeecccccc
Confidence 3689999999887654333 357999999999987632211111 11222 223333333322 234578999999999
Q ss_pred HHHHHHHHhc-------CCCCEEEecCCCccchHHHHhhCC--------------CeEEEeeccCC----CCcccCHHHH
Q 014603 122 AIEVILTVLA-------RPGANILLPRPGFPYYEARATHSH--------------LEVRHFDLLPA----KGWEVDLDAV 176 (422)
Q Consensus 122 a~~~~~~~l~-------~~gd~Vl~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~----~~~~~d~~~l 176 (422)
|++.+++... ....+|+....+|++....+.... ......|.... .....+++.+
T Consensus 115 A~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (429)
T d1s0aa_ 115 AVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHH
T ss_pred chhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhh
Confidence 9999887542 233689999999987644333221 01112221110 1111234455
Q ss_pred HHhhc--CCceEEEEeCC--CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEe
Q 014603 177 EALAD--ENTVALVIINP--GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLG 251 (422)
Q Consensus 177 ~~~~~--~~~~~i~i~~p--~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 251 (422)
++.+. .+..+.++..| ++..|. .+|++.+++|.++|++||+++|.||++.++.++|... ....++..++++++
T Consensus 195 ~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-~~~~~~v~PDi~~~- 272 (429)
T d1s0aa_ 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF-ACEHAEIAPDILCL- 272 (429)
T ss_dssp HHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEEEE-
T ss_pred hhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccc-ccccceeccccccc-
Confidence 44432 35566777777 355555 5688999999999999999999999999987777543 33444444444554
Q ss_pred cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 014603 252 SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRET 325 (422)
Q Consensus 252 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 325 (422)
+|.++..+.++|.++++ +++.+.+.... ..+.+.++++.+++.+.|+...+ ++..+++++.
T Consensus 273 --gK~l~gG~~p~~av~~~--------~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~---~~~~~~~~~~ 339 (429)
T d1s0aa_ 273 --GKALTGGTMTLSATLTT--------REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GDWQQQVADI 339 (429)
T ss_dssp --CGGGGTSSSCCEEEEEC--------HHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHH
T ss_pred --ccccccccccccchhhH--------HHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccc---ccccchhhHH
Confidence 69976666899999986 56777765421 23457789999999999987542 2234445555
Q ss_pred HHHHHHHhhcC---CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cC
Q 014603 326 ADICCDRLKEI---PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VE 400 (422)
Q Consensus 326 ~~~l~~~L~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~ 400 (422)
-+++++.|+++ +.+. - ....|.+..+.+..+. ....+... +.++|+.+.+. .+.+|+++. .+
T Consensus 340 g~~l~~~L~~l~~~~~v~-~-vrg~Gl~~~~e~~~~~-----~~~~~~~~-~~~~Gl~~~~~-----g~~i~~~Ppl~it 406 (429)
T d1s0aa_ 340 EVQLREQLAPARDAEMVA-D-VRVLGAIGVVETTHPV-----NMAALQKF-FVEQGVWIRPF-----GKLIYLMPPYIIL 406 (429)
T ss_dssp HHHHHHHHGGGGGCTTEE-E-EEEETTEEEEEESSCB-----CHHHHHHH-HHHTTEECCCB-----TTEEEECCCTTCC
T ss_pred HHHHHHHHHHhccCCceE-E-EeecccEEEEEecCcc-----cHHHHHHH-HHHCCcEEEec-----CCEEEEeCCcCCC
Confidence 55666666543 3222 1 1223566666665431 34555554 45679998774 368999976 78
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 014603 401 PSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 401 ~~~l~~~~~~l~~~~~~~ 418 (422)
+++|++++++|++++++.
T Consensus 407 ~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 407 PQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998764
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.89 E-value=3e-22 Score=182.35 Aligned_cols=315 Identities=14% Similarity=0.127 Sum_probs=190.7
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecC
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPR 141 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~ 141 (422)
+++|+|++||.++.... ...|++....+++|+.+++++ +.++++|++|+|+|+|++.++..+..+++.+++..
T Consensus 11 g~~P~v~eAl~~~~~~~-~~~y~~~~~~~~lr~~ia~~~------g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~ 83 (340)
T d1svva_ 11 GMHPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELL------ERPDADVHFISGGTQTNLIACSLALRPWEAVIATQ 83 (340)
T ss_dssp CCCHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHH------TCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEET
T ss_pred CCCHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHh------CCCcceEEEcCCHHHHHHHHHHHHhhhcccccccc
Confidence 56899999999876553 346877777789999999999 56778999999999999999999999999999998
Q ss_pred CCccchHHHHhh--CCCeEEEeeccCCCCcccCHHHHHHhh------cCCceEEEEeCCCCCcccccCHHHHHHHHHHHH
Q 014603 142 PGFPYYEARATH--SHLEVRHFDLLPAKGWEVDLDAVEALA------DENTVALVIINPGNPCGNVYTYQHLQKIAETAK 213 (422)
Q Consensus 142 ~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~------~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~ 213 (422)
+.|..+...... .+....... +... ..+.+...+.. ...+..++++.+.|+.|.+.+.+++..+...|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (340)
T d1svva_ 84 LGHISTHETGAIEATGHKVVTAP--CPDG-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCK 160 (340)
T ss_dssp TSHHHHSSTTHHHHTTCCEEEEC--CTTS-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHH
T ss_pred ccceeeeecccccccceeeeecc--cccc-cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccc
Confidence 888655322222 222222222 1111 12323222221 112344555555556777778899999999999
Q ss_pred HcCcEEEEcccccccccCCC-CCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh--
Q 014603 214 KLGIMVIADEVYDHLAFGNT-PFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-- 290 (422)
Q Consensus 214 ~~~~~li~D~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-- 290 (422)
++|.++++|+++........ .......... ...+...+..|..+ +.+.++..... ...........
T Consensus 161 ~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~~~ 229 (340)
T d1svva_ 161 EHGLYLFLDGARLASALSSPVNDLTLADIAR-LTDMFYIGATKAGG--MFGEALIILND--------ALKPNARHLIKQR 229 (340)
T ss_dssp HHTCEEEEECTTHHHHHTSTTCCCCHHHHHH-HCSEEEEECTTTTC--SSCEEEEECSG--------GGCTTHHHHHHHT
T ss_pred cccceeeeeccceeeeecccccccccccccc-cceeeecCCccccc--cccccccccch--------hhhhhhhhhcccc
Confidence 99999999999875332211 1111111111 12344445555433 33344444321 12222222221
Q ss_pred hccCc-chHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHH
Q 014603 291 ISSDP-ATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEF 369 (422)
Q Consensus 291 ~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (422)
....+ .....+++...++. .......++...+++.+.+.|+.. ++. +..|..++++++.++. +.
T Consensus 230 ~~~~~~~~~~~aa~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-g~~-~~~p~~~~~v~~~~~~----------~~ 294 (340)
T d1svva_ 230 GALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGLEAC-GIR-LAWPSASNQLFPILEN----------TM 294 (340)
T ss_dssp TCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHT-TCC-BSSCCSSSEECBEEEH----------HH
T ss_pred cCccchhhHHHHHHHHHhhh---hHHHHHHHHHHHHHhhhHHHHhcC-CCe-eecCCCceEEEEeCCH----------HH
Confidence 11122 22233333333433 334555667778888888888887 777 3367777888777743 34
Q ss_pred HHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHH
Q 014603 370 ALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKA 413 (422)
Q Consensus 370 ~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~ 413 (422)
...++++..+...+.. ...++.+|+|++ ++++|||+++++|++
T Consensus 295 ~~~l~~~~~~~~~~~~-~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 295 IAELNNDFDMYTVEPL-KDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp HHHHTTTEECEEEEEE-TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccc-CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555444222222211 122678999887 799999999999876
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=5e-21 Score=177.15 Aligned_cols=318 Identities=14% Similarity=0.119 Sum_probs=208.8
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCC--CCCCCHHHHHHHHHHHhhcCCCCCCCCC--EEEecCHHHHHHHHHHHhcCCCCEE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYS--STVGILPARRAIADYLNRDLPYKLSPDD--VYLTLGCTQAIEVILTVLARPGANI 137 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~--i~~~~g~~~a~~~~~~~l~~~gd~V 137 (422)
+.++.|++||.+.. ...+. ....+++.|+.+++++ ++++++ +++++|+|++++.++.++..+++.+
T Consensus 10 ~~~~~V~~A~~~~~----~~~~~~~~~~~~~~~r~~l~~l~------~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~ 79 (361)
T d1m32a_ 10 TTSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALA------TASEGYTSVLLQGSGSYAVEAVLGSALGPQDKV 79 (361)
T ss_dssp CCCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHH------CSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCE
T ss_pred CCCHHHHHHhhhhc----cCCCcHHHHHHHHHHHHHHHHHh------CCCCCCEEEEECCCHHHHHHHHHHHhhhhcccc
Confidence 56788888775432 22222 1345789999999999 455554 7788999999999999998888877
Q ss_pred EecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 138 LLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 138 l~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
++....+.. ........+.....+..........+.+.......++++.+.+++.+|.||... ++++|.++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~---~i~~i~~~~~~~ 156 (361)
T d1m32a_ 80 LIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLN---PIDEVGALAHRY 156 (361)
T ss_dssp EEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC---CHHHHHHHHHHH
T ss_pred ceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccch---hhhhhhhhhccc
Confidence 776655533 233444455555555443332222334444555677899999999999999996 477788899999
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHH--------
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIK-------- 286 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~-------- 286 (422)
|+++++|.+++. |..+.++..++.+ ++++|.+|++++ +| +|+++.++ +..++..
T Consensus 157 g~~~~vDa~qs~----G~~~~d~~~~~~D---~~~~s~~K~l~gp~G--~g~l~~~~--------~~~~~~~~~~~~~~~ 219 (361)
T d1m32a_ 157 GKTYIVDAMSSF----GGIPMDIAALHID---YLISSANKCIQGVPG--FAFVIARE--------QKLAACKGHSRSLSL 219 (361)
T ss_dssp TCEEEEECTTTT----TTSCCCTTTTTCS---EEEEESSSTTCCCSS--EEEEEEEH--------HHHTTCTTCCSCSTT
T ss_pred ceeeEeeccccc----Ccccccccccccc---eEEeeecccccCCCC--ceEEEech--------hhhhhhccccccccc
Confidence 999999999987 4444556666554 899999999754 46 78887752 1111111
Q ss_pred ----------h-hhhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CceEEE
Q 014603 287 ----------S-FLNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GSMFVM 352 (422)
Q Consensus 287 ----------~-~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~ 352 (422)
. .....++++.....+...++.... +........+.+...+.+.+.++.. +......+. +...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~ 298 (361)
T d1m32a_ 220 DLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITA 298 (361)
T ss_dssp CHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEE
T ss_pred cchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEE
Confidence 0 111234666677777777666533 3345555666777777888888776 444232221 122334
Q ss_pred EecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 353 VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
+.+|... ..+..+++..+ .++||.+.+|... ..+.+||++. ++++|+++++++|++++
T Consensus 299 ~~~p~~~---~~~~~~~~~~l-~~~gi~i~~G~~~-~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 299 FYSPEDP---QYRFSEFYRRL-KEQGFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp EECCCCT---TCCHHHHHHHH-HHTTEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred EECCCCC---CCCHHHHHHHH-HHCCcEEECCCcC-CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 4554321 11455666655 6679999887543 3678999963 78899999999998875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=2.4e-21 Score=179.59 Aligned_cols=332 Identities=19% Similarity=0.188 Sum_probs=219.4
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ .-+|++.+++.+++.+... .+.....+.+..+++.+.... +...+.++++++|++|
T Consensus 35 dG~~ylD~~~g~~~~~lG-h~hp~v~~a~~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~--~~~~~~v~f~~sGseA 108 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLG-HGNPEVVEAVKRQAETLMA---MPQTLPTPMRGEFYRTLTAIL--PPELNRVFPVNSGTEA 108 (387)
T ss_dssp TSCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHHHCCC---CCTTSCCHHHHHHHHHHHHTS--CTTEEEEEEESSHHHH
T ss_pred CCCEEEEcchhHHhhhhc-CCcHHHHHHHHHHHHhhcc---cccccCCchHHHHHHHhhhhc--cccceeeccccCchHH
Confidence 688999998765443222 3579999999999986322 121122355666666665432 2233579999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCC-------------eEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATHSHL-------------EVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
++.+++... ....+|+....+||+....+..... ++..+|. -|.+.|++.++++. +.
T Consensus 109 ~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~~i-Aa 180 (387)
T d1vefa1 109 NEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEET-AA 180 (387)
T ss_dssp HHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTE-EE
T ss_pred HHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCCCe-EE
Confidence 999988642 2337899999999886544443221 1222221 27889999887655 45
Q ss_pred EEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeE
Q 014603 188 VIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 265 (422)
Q Consensus 188 ~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G 265 (422)
++..| +...|. .++++.++++.++|++||+++|.||+++++.++|... ....++..++++++ +|.+ ..|..++
T Consensus 181 vi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~-~~~~~~v~PDi~~~---gK~l-~gG~~~~ 255 (387)
T d1vefa1 181 VILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGIVPDILTL---AKAL-GGGVPLG 255 (387)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEEEE---CGGG-GTTSSCE
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCc-ccccCCcCCceeee---cccC-CCCcccc
Confidence 56677 444565 5778899999999999999999999999987777543 33344444444444 6995 5778888
Q ss_pred EEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 014603 266 WLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK 344 (422)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 344 (422)
.++.. +++++.+.... ..+.+.++++++++.+.|+...+ .+..+++++..+++.+.|+++..-.+...
T Consensus 256 ~~~~~--------~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~~~v~~v 324 (387)
T d1vefa1 256 VAVMR--------EEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREV 324 (387)
T ss_dssp EEEEE--------HHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred ccccc--------eeeeeccccCCccccCCCCcchhhhcccchhhccc---ccccchHhhhhHHHHHHHHhcCCCceEEE
Confidence 88875 34555443333 23457789999999999986432 33445666677777888877522111111
Q ss_pred CCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 345 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
..-|.+..+.++.. ....+..++.++|+.+.+.. .+.+|++++ +++++|++++++|++++
T Consensus 325 rg~Gl~~~ie~~~~-------~~~~~~~~~~~~g~l~~~~g----~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 325 RGMGLMVGLELKEK-------AAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EEETTEEEEEESSC-------SHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eecceEEEEEEeCC-------chHHHHHHHHHCCCeEEecC----CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 22356666777642 23344455566688776543 468999986 78999999999999886
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=4.6e-21 Score=178.79 Aligned_cols=323 Identities=15% Similarity=0.093 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc---CCCCE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA---RPGAN 136 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~~gd~ 136 (422)
+.+++|++||.... ..++.+. ..+.++++.+.+.++.. .+.+++.|+||+|+|+++++++.++. ++||+
T Consensus 13 ~v~~~V~~Am~~~~----~~hr~~~f~~~~~~~~~~~r~~~~~~--~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~ 86 (382)
T d2bkwa1 13 ILSGAVQKALDVPS----LGHTSPEFVSIFQRVLKNTRAVFKSA--AASKSQPFVLAGSGTLGWDIFASNFILSKAPNKN 86 (382)
T ss_dssp CCCHHHHHTTSCCC----CCTTSHHHHHHHHHHHHHHHHHTTCC--GGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCE
T ss_pred CCCHHHHHHhCccc----CCCCcHHHHHHHHHHHHHHHHHHhhh--cCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCc
Confidence 56788888774321 2223221 11233444444444321 13456789999999999999999985 57999
Q ss_pred EEecCCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh-cCCceEEEEeCCCCCcccccCHHHHHHHHHHHH
Q 014603 137 ILLPRPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALA-DENTVALVIINPGNPCGNVYTYQHLQKIAETAK 213 (422)
Q Consensus 137 Vl~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~ 213 (422)
|++....+++. ...++..+.....+...+ .+...+.+.+++.+ ..+++++++++.+|.||...+.+. +.+.|+
T Consensus 87 vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~---~~~~~~ 162 (382)
T d2bkwa1 87 VLVVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA---ISQAIK 162 (382)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH---HHHHHH
T ss_pred eEEEEechhhhhhhhhccccccccccccccC-CCCccchhHHHHHhhhccchheeeeeccccccccccchh---hhhhcc
Confidence 99998887653 445566777776554332 33456778777765 456788899999999999976444 455554
Q ss_pred Hc--CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHHHhh--
Q 014603 214 KL--GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSIKSF-- 288 (422)
Q Consensus 214 ~~--~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-- 288 (422)
++ ++++++|.+++. |..+.++...+.| +++.|.+|++ +.+| +|+++.+ ++..+++...
T Consensus 163 ~~~~~~~~~vDa~qs~----g~~pid~~~~giD---~~~~s~~K~l~gP~G--~g~l~vs--------~~~~~~~~~~~~ 225 (382)
T d2bkwa1 163 QTSPETFFVVDAVCSI----GCEEFEFDEWGVD---FALTASQKAIGAPAG--LSISLCS--------SRFMDYALNDSK 225 (382)
T ss_dssp HHCTTSEEEEECTTTT----TTSCCCTTTTTCS---EEEEESSSTTCCCSC--EEEEEEC--------HHHHHHHTCHHH
T ss_pred ccccceeeeeeccccc----ccccccccccCee---EEeecccccCcCCCc--hhhhhcc--------HHHHhhhhhccc
Confidence 54 599999999987 5555666666665 8899999998 5577 7888886 3444333211
Q ss_pred -------------------------hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014603 289 -------------------------LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343 (422)
Q Consensus 289 -------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 343 (422)
..+.++++....+++.++|+...+...+...++.+++++.+++.+...+++....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 305 (382)
T d2bkwa1 226 NGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVS 305 (382)
T ss_dssp HCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESS
T ss_pred CCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccc
Confidence 1123477777888888888876667788888888888999999888754433111
Q ss_pred -CCCC---ceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCC-CCeEEEE-ec--cChHHHHHHHHHHHHHH
Q 014603 344 -KPEG---SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRIT-FA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 344 -~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~iRis-~~--~~~~~l~~~~~~l~~~~ 415 (422)
.+.. .....+.++ +..++... ++++||.+.+|..... .+.+||+ ++ .++++++.+++.|+.+.
T Consensus 306 ~~~~~~~s~~v~~~~~~--------~~~~~~~~-L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 306 RYPSNMSAHGLTAVYVA--------DPPDVIAF-LKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp CSSSTTBCSSCEEEECS--------CHHHHHHH-HHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred cCchhccCCcEEEEcCC--------CHHHHHHH-HHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 1111 112234444 35565554 5788999998865433 5789999 65 45677777777776655
Q ss_pred HHhcc
Q 014603 416 DRHAK 420 (422)
Q Consensus 416 ~~~~~ 420 (422)
..+++
T Consensus 377 ~~L~~ 381 (382)
T d2bkwa1 377 LALQR 381 (382)
T ss_dssp HHTTC
T ss_pred HHHCc
Confidence 55544
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.89 E-value=3e-21 Score=180.34 Aligned_cols=345 Identities=15% Similarity=0.122 Sum_probs=214.7
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|++.+|+.+++.+... ..........+.+++.+.... ..+.+.++.++++|
T Consensus 37 dG~~ylD~~~g~~~~~lG-h~~p~v~~Ai~~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~sgs~a 108 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQG-HCHPNILNAMINQAKNLTI---CSRAFFSVPLGICERYLTNLL----GYDKVLMMNTGAEA 108 (404)
T ss_dssp TCCEEEESSHHHHTTTTC-BTCHHHHHHHHHHHTTCSC---CCTTSEEHHHHHHHHHHHHHH----TCSEEEEESSHHHH
T ss_pred CCCEEEEccccHHHHhhh-cCcHHHHHHHHHHHHhCCC---cccccchHHHHHHHHhhhhcc----ccceeeeeccccch
Confidence 689999999886443233 3579999999999876322 111112222233333333321 34678999999999
Q ss_pred HHHHHHHhc----------CCCCEEEecCCCccchHHHHhhCCCeEE----EeeccCCC--CcccCHHHHHHhhcCCceE
Q 014603 123 IEVILTVLA----------RPGANILLPRPGFPYYEARATHSHLEVR----HFDLLPAK--GWEVDLDAVEALADENTVA 186 (422)
Q Consensus 123 ~~~~~~~l~----------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~--~~~~d~~~l~~~~~~~~~~ 186 (422)
...+++... .....++....+|++............. ..|..+.. ...-+.+.++..+.++..+
T Consensus 109 ~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iA 188 (404)
T d1z7da1 109 NETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVC 188 (404)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEE
Confidence 998886542 1224788888888765433332211100 00100000 0012566777777777777
Q ss_pred EEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCcee
Q 014603 187 LVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRL 264 (422)
Q Consensus 187 i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~ 264 (422)
.++..| +...|. .+|++.+++|.++|++||+++|+||++.++.++|... ....++..++++ +++|.++..+.++
T Consensus 189 avi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~-~~e~~gv~PDiv---t~gK~l~gG~~p~ 264 (404)
T d1z7da1 189 AFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL-CVHHYNVKPDVI---LLGKALSGGHYPI 264 (404)
T ss_dssp EEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-GGGGGTCCCSEE---EECGGGGTTSSCC
T ss_pred EEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccc-cccccCCCCCEE---EEcccccCCCCCc
Confidence 788888 445665 4677889999999999999999999999887766532 344455444444 4579975545899
Q ss_pred EEEEeeCCCCcccchhHHHHHHhhh-hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014603 265 GWLVTSDPNGILQDSGIVDSIKSFL-NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITCP 342 (422)
Q Consensus 265 G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 342 (422)
|.++++ +++.+.+.... ..+.+.++++++|+.+.|+... +...++..+.-....+.+.+.+++.+.+. .
T Consensus 265 ~~v~~~--------~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~-~ 335 (404)
T d1z7da1 265 SAVLAN--------DDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVR-D 335 (404)
T ss_dssp EEEEEC--------HHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEE-E
T ss_pred ccccch--------HHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeE-E
Confidence 999986 45666555443 2345778999999999988644 34444444555556666666677765433 1
Q ss_pred CCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 343 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 343 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
...-|.++.+.+.... ....++..++ .++|+.+.+.. .+.+|+.++ +++++|++++++|+++++++
T Consensus 336 -vrg~Gl~~~i~~~~~~----~~~~~~~~~l-~~~Gl~~~~~~----~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 336 -VRGKGLLCAIEFKNEL----VNVLDICLKL-KENGLITRDVH----DKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp -EEEETTEEEEEECTTT----CCHHHHHHHH-HHTTEECCEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -EEeeCcEEEEEEcCCc----ccHHHHHHHH-HhCCeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 1233556667775421 1345565555 56699987643 477999876 78999999999999999876
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.88 E-value=7.2e-20 Score=166.99 Aligned_cols=288 Identities=17% Similarity=0.162 Sum_probs=202.0
Q ss_pred CCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhC
Q 014603 81 NCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHS 154 (422)
Q Consensus 81 ~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~ 154 (422)
..|+.. +....|++.++++- ..+..++++||++|+..++.+++++||+|+++...|.+... .....
T Consensus 55 ~~Y~R~~nPT~~~LE~~la~LE--------gg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~ 126 (397)
T d1y4ia1 55 YIYTRLGNPTTDALEKKLAVLE--------RGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 126 (397)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT
T ss_pred ceeeCCCCHHHHHHHHHHHHHh--------CCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCC
Confidence 356542 33556777777776 34567889999999999999999999999999999977644 44567
Q ss_pred CCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC
Q 014603 155 HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP 234 (422)
Q Consensus 155 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~ 234 (422)
|+++..+.. .|++.++++++++++++++..|.||+..+ .|+++|+++|+++|+++++|..+.. +..
T Consensus 127 Gi~~~~vd~-------~d~~~~~~~i~~~Tklv~~Esp~NP~l~v---~Di~~i~~iA~~~gi~~vvDnT~at----P~~ 192 (397)
T d1y4ia1 127 GINVRFVDA-------GKPEEIRAAMRPETKVVYIETPANPTLSL---VDIETVAGIAHQQGALLVVDNTFMS----PYC 192 (397)
T ss_dssp TCEEEEECT-------TSHHHHHHHCCTTEEEEEEESSCTTTCCC---CCHHHHHHHHHHTTCEEEEECTTTC----TTT
T ss_pred ceEeeccCC-------CCHHHHHHhcCCCCcEEEecCCcccceee---cccHHHHHHhhcCCceEEecCcccC----ccc
Confidence 888877652 37899999999999999999999999998 4788999999999999999999864 111
Q ss_pred CCCccccCCCCCeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHH--Hhhhhh-ccCcchHHHHHHHHHHhhc
Q 014603 235 FVPMGVFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSI--KSFLNI-SSDPATFIQGAVPQILEKT 310 (422)
Q Consensus 235 ~~~~~~~~~~~~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~a~~~~l~~~ 310 (422)
..+ ..++.| +++.|.+|.+++-+-- .|.++++ ++.+.+. ...... ...+++...+.+..-|+.
T Consensus 193 ~~P-l~~GaD---ivihS~TKyi~Ghsdvl~G~v~~~--------~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T- 259 (397)
T d1y4ia1 193 QQP-LQLGAD---IVVHSVTKYINGHGDVIGGIIVGK--------QEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT- 259 (397)
T ss_dssp CCG-GGGTCS---EEEEETTTTTTCSSCCCCEEEEEC--------HHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-
T ss_pred Ccc-hhcCCC---EEEEehhhhcCCCcceeeeccCCC--------HHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-
Confidence 222 234444 9999999998765544 4555554 3444433 333332 457788888888888876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHH
Q 014603 311 EEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLA 374 (422)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (422)
+.-+.++..++...+.+.|+++|.+..+.+|. .|..+.+.+.. ..+...+++
T Consensus 260 ----L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~--------~~~~~~~f~ 327 (397)
T d1y4ia1 260 ----LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG--------GLEAGRRMI 327 (397)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT--------HHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC--------CHHHHHHHH
Confidence 67777888899999999999988765444441 23344455542 333344555
Q ss_pred HhcCeEEe---cCCCC----------------------C-CCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 375 KEESVIVL---PGITV----------------------G-LKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 375 ~~~gi~v~---~g~~~----------------------~-~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+.-.+.-. -|... + .++.||+|++. |+.+.+++.|++++++
T Consensus 328 ~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl--Ed~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 328 NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL--EDPEDIINDLEHAIRK 394 (397)
T ss_dssp HTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred HcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc--CCHHHHHHHHHHHHHH
Confidence 54443321 11110 1 14689999997 4566667777777764
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=2.9e-21 Score=176.60 Aligned_cols=313 Identities=17% Similarity=0.144 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEe
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILL 139 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~ 139 (422)
+.+++|+++|.+..-+ .+.+ ...+.+.++.+++++ +.+.+.+++++|+|.++++++..++.+|++|++
T Consensus 10 ~v~~~V~~am~~~~~~----hr~~~f~~i~~~~~~~l~~ll------~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv 79 (348)
T d1iuga_ 10 RLHPKALEALARPQLH----HRTEAAREVFLKARGLLREAF------RTEGEVLILTGSGTLAMEALVKNLFAPGERVLV 79 (348)
T ss_dssp CCCHHHHHHHHSCCCC----TTSHHHHHHHHHHHHHHHHHH------TCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHh------CCCCCEEEEeCchHHHHHHHHHhccccccccee
Confidence 5678999988764322 2222 123456666777776 345567889999999999999999999999999
Q ss_pred cCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC-
Q 014603 140 PRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG- 216 (422)
Q Consensus 140 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~- 216 (422)
...++++ +...++..+..+..+...... .++++. ...++.+.+++++..+.||+..+ +++|.++|++++
T Consensus 80 ~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~---~~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~ 151 (348)
T d1iuga_ 80 PVYGKFSERFYEIALEAGLVVERLDYPYGD--TPRPED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKEKNP 151 (348)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCT
T ss_pred ecchHHHHHHHHHHHhcCcccccccccCCC--cccccc---ccccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhc
Confidence 8888654 456677788877777654322 234333 33567888999999999999965 666677777774
Q ss_pred -cEEEEcccccccccCCCCCCCccccCCCCCeEEEecCcccc-CCCCceeEEEEeeCCCCcccchhHHHHH---------
Q 014603 217 -IMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRW-IVPGWRLGWLVTSDPNGILQDSGIVDSI--------- 285 (422)
Q Consensus 217 -~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~--------- 285 (422)
.++++|.+++. |..+.++...+.| ++++|..|.+ +.|| +|+++.++ +.++++
T Consensus 152 ~~l~~vDavss~----g~~~i~~d~~~iD---~~~~~sqK~l~gppG--~~~v~~s~--------~~le~~~~~~~~~dl 214 (348)
T d1iuga_ 152 EGLVGADMVTSL----LVGEVALEAMGVD---AAASGSQKGLMCPPG--LGFVALSP--------RALERLKPRGYYLDL 214 (348)
T ss_dssp TCEEEEECTTTB----TTBCCCSGGGTCS---EEEEESSSTTCCCSC--EEEEEECH--------HHHHTCCCCSSTTCH
T ss_pred cceeechhhhcc----cccccccccccCC---EEEeccccceecCCc--eeeeeech--------HHHhhhcccccccch
Confidence 78999999886 3334455555554 8889999998 6677 78888863 222221
Q ss_pred ----Hhh--hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCceEEEEecCcc
Q 014603 286 ----KSF--LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK-KPEGSMFVMVKLNYS 358 (422)
Q Consensus 286 ----~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~~~~~~~~~~ 358 (422)
... ..+.++|+....+++.++|+...+.+ .+..++.+..++.++..++.. ++.... ..+.+ ...+.+|.+
T Consensus 215 ~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~-v~~~~~P~g 291 (348)
T d1iuga_ 215 ARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPA-VAAFYLPEG 291 (348)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTT-CEEEECCTT
T ss_pred hhhhhhhccCcccccccchHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhh-hhccChhhcCCe-EEEEECCCC
Confidence 111 12345788888888888887643333 333344444445555555554 554221 11222 345667643
Q ss_pred cccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 359 LLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+..++...+ +++|+.+.+|...-....+||+.. .+.++++.+++.|+++++++
T Consensus 292 -----~~~~~~~~~l-~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 292 -----VPYARVKEAF-AQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp -----CCHHHHHHHH-HTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHH-HHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2566666554 778999999876544678999864 78899999999999999875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=3.9e-20 Score=174.47 Aligned_cols=361 Identities=14% Similarity=0.013 Sum_probs=237.1
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCC---CEEEecCH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPD---DVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~---~i~~~~g~ 119 (422)
+|.+.+||.+...+ ..+|++.+.|.+.++.... .+...+...+++..+.+++.+.+|.+.... .=.+|+|+
T Consensus 51 dg~~~~n~asf~~t-----~~~~~~~~l~~~~~~~N~~-~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~Gg 124 (450)
T d1pmma_ 51 DGNARQNLATFCQT-----WDDENVHKLMDLSINKNWI-DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 124 (450)
T ss_dssp SCCGGGBCSCCSCC-----CCCHHHHHHHHHTTTCBTT-CTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSH
T ss_pred CCCccccccccccC-----CCCHHHHHHHHHHHhcCCC-CcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCch
Confidence 56667788776544 4557888888888776422 333333356888888888888776543221 24799999
Q ss_pred HHHHHHHHHHhcC-----------CC-CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEE
Q 014603 120 TQAIEVILTVLAR-----------PG-ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVAL 187 (422)
Q Consensus 120 ~~a~~~~~~~l~~-----------~g-d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i 187 (422)
|+|+..++.+... +. ..+++....|.++..+++.+|++++.++.++ .++.+|++.|++.+++++.++
T Consensus 125 SeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~V 203 (450)
T d1pmma_ 125 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENTIGV 203 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecC-CCCcCcHHHHHHHhhhCceEE
Confidence 9999987765421 12 3577788889999999999999999999875 357899999999999999999
Q ss_pred EEeCCCCCcccccCHHHHHHHHH---HHHHcCcEEEEcccccccc--cCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 188 VIINPGNPCGNVYTYQHLQKIAE---TAKKLGIMVIADEVYDHLA--FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 188 ~i~~p~nptG~~~~~~~l~~i~~---~~~~~~~~li~D~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
+.+.+++.||.+-|.+++.+|++ +|+++|+++++|.+++++. +..........+. .-..+..|.+|++ ....
T Consensus 204 v~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~--~aDSi~~s~HK~~-~~p~ 280 (450)
T d1pmma_ 204 VPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLP--RVKSISASGHKFG-LAPL 280 (450)
T ss_dssp ECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST--TEEEEEEETTTTT-CCCS
T ss_pred EeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhccc--ceeEeecChhhcc-CCCC
Confidence 99999999999977776655544 4678899999999997643 1111111111111 1126777999984 4445
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHh---h-----hhhc--cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKS---F-----LNIS--SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
.+|+++.+++.... ..+.. + ...+ ++-+.....+....+.......+.+..++..++.+++.+.
T Consensus 281 g~g~l~~r~~~~~~------~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~ 354 (450)
T d1pmma_ 281 GCGWVIWRDEEALP------QELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADE 354 (450)
T ss_dssp SCEEEEESSGGGSC------GGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEecChhhhh------hhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999997643111 11100 0 0011 1112222223333444445678899999999999999999
Q ss_pred hhcCCCCCCCC--CCCCc-eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---CCCeEEEEec--cChHHH
Q 014603 333 LKEIPCITCPK--KPEGS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFA--VEPSAL 404 (422)
Q Consensus 333 L~~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~l 404 (422)
|++++++.+.. .|..+ ..+.+++......+. +..++...| +++|..|....... ....+|+.+. ++++++
T Consensus 355 L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~-~~~~l~~~L-~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~ 432 (450)
T d1pmma_ 355 IAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGY-TLYDLSERL-RLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFA 432 (450)
T ss_dssp HHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSS-CHHHHHHHH-HTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred HHhCCCeEEEeCCCCCCceEEEEEecCCcccCCC-CHHHHHHHH-HHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHH
Confidence 99998876432 12222 234455543222222 455665555 66787663221111 1347999987 688999
Q ss_pred HHHHHHHHHHHHHhccc
Q 014603 405 EDGLGRMKAFYDRHAKK 421 (422)
Q Consensus 405 ~~~~~~l~~~~~~~~~~ 421 (422)
+.+++.|+++++++.++
T Consensus 433 d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 433 ELLLEDYKASLKYLSDH 449 (450)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999887653
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-19 Score=165.49 Aligned_cols=290 Identities=20% Similarity=0.205 Sum_probs=202.9
Q ss_pred CCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCC
Q 014603 82 CYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSH 155 (422)
Q Consensus 82 ~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g 155 (422)
.|.. .+....|++.++++- ..+..+++++|++|+..++.+++++||.|++....|.+... .....|
T Consensus 43 ~Y~R~~nPt~~~le~~la~LE--------gg~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g 114 (384)
T d1cs1a_ 43 DYSRRGNPTRDVVQRALAELE--------GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 114 (384)
T ss_dssp SBTTTCCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred cccCCCCHHHHHHHHHHHHHh--------CCCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccc
Confidence 4554 233567788888876 34678999999999999999999999999999999976633 333446
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF 235 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~ 235 (422)
..+..+.. .|.+.+++.++++++++++..|.||+..+. |+++|+++|+++|+++|+|..+... ...
T Consensus 115 ~~~~~~d~-------~d~~~~~~~~~~~t~~v~~EspsNP~l~v~---Di~~i~~ia~~~g~~~vVDNT~atP----~~~ 180 (384)
T d1cs1a_ 115 YRVLFVDQ-------GDEQALRAALAEKPKLVLVESPSNPLLRVV---DIAKICHLAREVGAVSVVDNTFLSP----ALQ 180 (384)
T ss_dssp CEEEEECT-------TCHHHHHHHHHTCCSEEEEECSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCT----TTC
T ss_pred cccccccC-------CCHHHHHhhccccccEEEEeccccccceec---cHHHHhhhhhhcCcEEEEeccccCc----ccc
Confidence 56555431 478899999999999999999999999994 7888899999999999999998541 112
Q ss_pred CCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHH
Q 014603 236 VPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 236 ~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
.+ ..++.| +++.|.+|.+++-| .=.|.++.++ +.+.+.+..... .....++...+.+..-|+.
T Consensus 181 ~P-l~~GaD---iVvhS~TKyi~Ghsdv~~G~vv~~~-------~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T---- 245 (384)
T d1cs1a_ 181 NP-LALGAD---LVLHSCTKYLNGHSDVVAGVVIAKD-------PDVVTELAWWANNIGVTGGAFDSYLLLRGLRT---- 245 (384)
T ss_dssp CG-GGGTCS---EEEEETTTTTTCSSCCCCEEEEESS-------HHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT----
T ss_pred cc-cccCCC---EEEEccccccccCCCcccccccCCc-------hhhhhhhhhhhhhhhhccccccHHHHhhccch----
Confidence 22 234444 99999999987655 3356566643 455555555443 3456778888888777876
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhc
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEE 377 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (422)
+.-+.++..++...+.+.|+.+|.+.-+.+|. .|..+.+.+.. ..+.+.+++++-
T Consensus 246 -L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~--------~~~~a~~f~~~L 316 (384)
T d1cs1a_ 246 -LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG--------DEQTLRRFLGGL 316 (384)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--------CHHHHHHHHHTC
T ss_pred -hHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc--------hHHHHHHHHHhC
Confidence 67777888999999999999887765444442 23344455543 233344455544
Q ss_pred CeEE-ec--CCCC----------------------C-CCCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 378 SVIV-LP--GITV----------------------G-LKDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 378 gi~v-~~--g~~~----------------------~-~~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
.++. .+ |... + .++.||+|++. |+.+.+++.|+++++...
T Consensus 317 ~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl--Ed~eDLi~Dl~~AL~aa~ 382 (384)
T d1cs1a_ 317 SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN 382 (384)
T ss_dssp SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred CcceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHHHhc
Confidence 4322 11 1110 0 14679999997 567777888888887654
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.87 E-value=8.7e-21 Score=176.55 Aligned_cols=319 Identities=13% Similarity=0.117 Sum_probs=212.9
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEe
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILL 139 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~ 139 (422)
+.+++|+++|.... ...+.. ...+.+.|+.++++++. -+...|++++|||+++++++..+..+|+++++
T Consensus 28 ~v~~~Vl~am~~~~----~~hr~~ef~~i~~~~r~~l~~ll~~-----~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~ 98 (377)
T d1vjoa_ 28 NAHPSVLQAMNVSP----VGHLDPAFLALMDEIQSLLRYVWQT-----ENPLTIAVSGTGTAAMEATIANAVEPGDVVLI 98 (377)
T ss_dssp CCCHHHHHHHSSCC----CCTTSHHHHHHHHHHHHHHHHHHTC-----CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHhCC-----CCCeEEEEcCcHHHHHHHHHHhccccccccce
Confidence 56789988875432 222322 23467788888888832 13457778888999999999999999999999
Q ss_pred cCCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHH-hhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcC
Q 014603 140 PRPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEA-LADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLG 216 (422)
Q Consensus 140 ~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 216 (422)
....++.. ...+...+.....+..... ...+.+..+. ..+++++.+.+++.+|.||+.. ++++|.++|+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~---~i~~i~~~~~~~g 173 (377)
T d1vjoa_ 99 GVAGYFGNRLVDMAGRYGADVRTISKPWG--EVFSLEELRTALETHRPAILALVHAETSTGARQ---PLEGVGELCREFG 173 (377)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC---CCTTHHHHHHHHT
T ss_pred eeechhhhhhhhhhhhhcccccccccCCC--CcccchhhhhhhhcCcceeeeeeeeeccceeee---chhhhhhhhhhcc
Confidence 88877644 3344445555555544322 2244444443 4455788888999999999995 5888889999999
Q ss_pred cEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh-------
Q 014603 217 IMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL------- 289 (422)
Q Consensus 217 ~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~------- 289 (422)
.++++|.+++. |....++..++.+ +++.|.+|.+++|+ .+|+++.+ ++.++......
T Consensus 174 ~~~~vDa~~~~----g~~~~~~~~~~~d---~~~~s~~K~~~gp~-g~~~~~~~--------~~~~~~~~~~~~~~~~~~ 237 (377)
T d1vjoa_ 174 TLLLVDTVTSL----GGVPIFLDAWGVD---LAYSCSQKGLGCSP-GASPFTMS--------SRAIEKLQRRRTKVANWY 237 (377)
T ss_dssp CEEEEECTTTT----TTSCCCTTTTTCS---EEECCSSSTTCSCS-SCEEEEEC--------HHHHHHHHTCSSCCSCST
T ss_pred ceEEEecchhh----hhhhhcccccccc---eeeecccccccCCC-EEEEecch--------hhHHhhhhccCCCCccee
Confidence 99999999976 4334455555554 88889999865443 25666654 23333332110
Q ss_pred --------------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CceEEEE
Q 014603 290 --------------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE--GSMFVMV 353 (422)
Q Consensus 290 --------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~ 353 (422)
....+++.....++..++........+...++.+++.+.+.+.+... ++..+..+. ....+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~ 316 (377)
T d1vjoa_ 238 LDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTV 316 (377)
T ss_dssp TCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEE
T ss_pred eccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEE
Confidence 11223333344444444444345567778888888888899998876 444232222 1223444
Q ss_pred ecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEe-c--cChHHHHHHHHHHHHHHH
Q 014603 354 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-A--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~-~--~~~~~l~~~~~~l~~~~~ 416 (422)
.++.. .+..++...|++++||.+..|......+.||||+ + ++.+++++++++|+++++
T Consensus 317 ~~p~~-----~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 317 CIPDG-----VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp ECCTT-----CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ECCCC-----CCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 56532 2678888888888899999988766678899994 5 568999999999998873
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=7.7e-20 Score=166.73 Aligned_cols=281 Identities=19% Similarity=0.223 Sum_probs=200.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hCCCeEEEeec
Q 014603 88 GILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HSHLEVRHFDL 163 (422)
Q Consensus 88 g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~~~~ 163 (422)
....|+++++++- ..+..+++++|++|+..++.+++++||+|++....|.+....+. .+|+++..++.
T Consensus 60 T~~~LE~~la~LE--------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~ 131 (392)
T d1gc0a_ 60 TLNLLEARMASLE--------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM 131 (392)
T ss_dssp HHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHHh--------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence 3567888888876 34678889999999999999999999999999999988755443 45777776642
Q ss_pred cCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCC
Q 014603 164 LPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGS 243 (422)
Q Consensus 164 ~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~ 243 (422)
.|++.++++++++++++++..|.||+..+ .|+++|+++|+++|+++++|..+..-.+ ..++ .++.
T Consensus 132 -------~d~~~~~~ai~~~t~lv~~Esp~NP~l~v---~Di~~i~~ia~~~g~~~vvDnT~atP~~----~~Pl-~~Ga 196 (392)
T d1gc0a_ 132 -------ADLQALEAAMTPATRVIYFESPANPNMHM---ADIAGVAKIARKHGATVVVDNTYCTPYL----QRPL-ELGA 196 (392)
T ss_dssp -------TCHHHHHHHCCTTEEEEEEESSCTTTCCC---CCHHHHHHHHGGGTCEEEEECTTTHHHH----CCGG-GGTC
T ss_pred -------cCHHHHHHhCCCCCeEEEecccccceeee---cchHHHHHHHHhcCCEEEEecCccCccc----cChH-HhCC
Confidence 37899999999999999999999999999 4789999999999999999999874221 1122 3455
Q ss_pred CCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHH--hhhh-hccCcchHHHHHHHHHHhhchHHHHHHHH
Q 014603 244 IVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIK--SFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIT 319 (422)
Q Consensus 244 ~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 319 (422)
| +++.|.+|.+++-| .-.|.++++ .+.+.+++ .... ....+++...+.+..-|+. +.-+.
T Consensus 197 D---ivihS~TKyi~Ghsd~~~G~v~~~--------~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-----L~lRm 260 (392)
T d1gc0a_ 197 D---LVVHSATKYLSGHGDITAGIVVGS--------QALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----LNLRM 260 (392)
T ss_dssp S---EEEEETTTTTTCSSSCCCEEEEEC--------HHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred C---EEEEecceeecCCcccccccccch--------hHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-----HHHHH
Confidence 5 99999999986644 445666664 34544433 3333 3457788888888888887 77788
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEE-e
Q 014603 320 DILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV-L 382 (422)
Q Consensus 320 ~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v-~ 382 (422)
++..++...+.+.|+++|.+.-+.+|. +|..+.+.+.. ..+...++++.-.++- .
T Consensus 261 ~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~--------~~~~~~~f~~~L~l~~~a 332 (392)
T d1gc0a_ 261 DRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--------GIGAGRRFMNALQLFSRA 332 (392)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--------HHHHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeC--------CHHHHHHHHHhCCcceEe
Confidence 888999999999999887665333331 12234445532 3333444444444321 1
Q ss_pred c--CCCC----------------------C-CCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 383 P--GITV----------------------G-LKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 383 ~--g~~~----------------------~-~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
+ |... + .++.||||++. |+.+.+++.|+++++.
T Consensus 333 ~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~a 390 (392)
T d1gc0a_ 333 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL--EDIDDLLADVQQALKA 390 (392)
T ss_dssp SCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred eccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeee--CCHHHHHHHHHHHHHh
Confidence 1 2111 1 14689999997 5666667777777753
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.87 E-value=1.3e-20 Score=176.13 Aligned_cols=320 Identities=13% Similarity=0.096 Sum_probs=212.0
Q ss_pred CCcHHHHHHHHHHhhCCCCCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCC-CCEEEecCHHHHHHHHHHHhcCCCCEEE
Q 014603 62 RTASVAVDAIVHSVRSARFNCYSS--TVGILPARRAIADYLNRDLPYKLSP-DDVYLTLGCTQAIEVILTVLARPGANIL 138 (422)
Q Consensus 62 ~~~~~v~~a~~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-~~i~~~~g~~~a~~~~~~~l~~~gd~Vl 138 (422)
..+++|++||.... ..++.. ...+.++|+.++++++ ++. +.|++++|||.++++++.++..+|++++
T Consensus 27 ~~~~~V~~Am~~~~----~~hr~~ef~~i~~~~r~~L~~ll~------~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl 96 (388)
T d2ch1a1 27 NCSKRVLTAMTNTV----LSNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVL 96 (388)
T ss_dssp CCCHHHHHHTTSCC----CCTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHhC------CCCCeEEEEcCcHHHHHHHHHHHhcccccccc
Confidence 45789998875433 223332 2345677888888884 343 4566788899999999999999999999
Q ss_pred ecCCCccch--HHHHhhCCCeEEEeeccCCCCcccCHHHHHHhh-cCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc
Q 014603 139 LPRPGFPYY--EARATHSHLEVRHFDLLPAKGWEVDLDAVEALA-DENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL 215 (422)
Q Consensus 139 ~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~ 215 (422)
+....+++. ...+...+.....+...+. ...+.+.+++.. ..+++++.+++.+|.||...+ +++|.++|+++
T Consensus 97 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~ 171 (388)
T d2ch1a1 97 IAVNGIWAERAVEMSERYGADVRTIEGPPD--RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQH 171 (388)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTT--SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT
T ss_pred ccccccccccchhhhhhhcccccccccccc--cccchhhhhhhhccCCcceeeeeecccccccccc---hhhhcchhccc
Confidence 988888654 3445566777776665443 235666655543 457888999999999999954 67777888899
Q ss_pred CcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC-CCceeEEEEeeCCCCcccchhHHHHHHhhh-----
Q 014603 216 GIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV-PGWRLGWLVTSDPNGILQDSGIVDSIKSFL----- 289 (422)
Q Consensus 216 ~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~----- 289 (422)
|.++++|.+++. |..+.++..++.+ +++.|..|++++ +| +|+++.+ ++..+.+....
T Consensus 172 ~~~~~vD~~ss~----g~~pid~~~~~~d---~~~~s~~K~~~gp~G--~g~~~~~--------~~~~~~~~~~~~~~~~ 234 (388)
T d2ch1a1 172 DCLLIVDAVASL----CGVPFYMDKWEID---AVYTGAQKVLGAPPG--ITPISIS--------PKALDVIRNRRTKSKV 234 (388)
T ss_dssp TCEEEEECTTTB----TTBCCCTTTTTCC---EEECCCC-CCCCCSS--CEEEEEC--------HHHHHHHHTCSSCCSC
T ss_pred cceeeeeeeecc----cccccchhccCce---EEEEccccccCCCCe--EEEEecc--------HHHHHhhhcccCcccc
Confidence 999999999987 4344455555554 888999998744 44 6677664 23333332110
Q ss_pred -------------------hhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCc
Q 014603 290 -------------------NISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP--EGS 348 (422)
Q Consensus 290 -------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g 348 (422)
.+..+++.....++..+++...........++.+.........+...........+ ...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~ 314 (388)
T d2ch1a1 235 FYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLP 314 (388)
T ss_dssp GGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCT
T ss_pred ccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCC
Confidence 12235555556666666654333444545555555555555555543221111122 122
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEE-ec--cChHHHHHHHHHHHHHHHHh
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRIT-FA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis-~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
....+.++.+ .+..++...+++++||.+.+|..+...+.|||| ++ ++.|+|+++++.|+++++..
T Consensus 315 ~v~~~~~p~g-----~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 315 TVTGIMIPKG-----VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp TEEEEECCTT-----CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCC-----CCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence 3445667542 267788888878889999998876667799999 66 46899999999999999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.87 E-value=1.9e-20 Score=175.95 Aligned_cols=346 Identities=16% Similarity=0.081 Sum_probs=209.0
Q ss_pred cCCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH
Q 014603 42 NDTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ 121 (422)
Q Consensus 42 ~~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~ 121 (422)
.+|..+|||..|......++ .+|+|.++++++++...... .+ ......+++++....+ ..+.++++++|++
T Consensus 49 ~~G~~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~~~~~-~~----~~~~~~la~~~~~~~~---~~~~v~f~~sGse 119 (427)
T d2gsaa_ 49 VDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTSFG-AP----CALENVLAEMVNDAVP---SIEMVRFVNSGTE 119 (427)
T ss_dssp TTSCEEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTCSCCS-SC----CHHHHHHHHHHHHHST---TCSEEEEESSHHH
T ss_pred CCCCEEEEechhHHHHhccC-CcHHHHHHHHHHHHhcCccc-cc----hhHHHHHHHHHHhhCC---ccccccccCCcHH
Confidence 36899999988865433333 58999999999997643211 11 2445556666655433 4578999999999
Q ss_pred HHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCCe-EE--EeeccCC-------C---CcccCHHHHHHhhcC--Cc
Q 014603 122 AIEVILTVLA--RPGANILLPRPGFPYYEARATHSHLE-VR--HFDLLPA-------K---GWEVDLDAVEALADE--NT 184 (422)
Q Consensus 122 a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~~-~~--~~~~~~~-------~---~~~~d~~~l~~~~~~--~~ 184 (422)
|++.+++... ....+|+..+.+||+....+...... .. .+|..+. + ....|++.+++.+++ +.
T Consensus 120 A~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 199 (427)
T d2gsaa_ 120 ACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGE 199 (427)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTT
T ss_pred HHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCC
Confidence 9999988653 23478999999998864333211100 00 0010000 0 011378889888865 45
Q ss_pred eEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCc
Q 014603 185 VALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGW 262 (422)
Q Consensus 185 ~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~ 262 (422)
.+.++..| ....|. .+|++.+++|.++|++||+++|+||++.++ ..|.. .....++..++++++ +|.+ ..|.
T Consensus 200 iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~-~~~~~~gi~PDi~~~---gK~l-ggG~ 273 (427)
T d2gsaa_ 200 IAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYG-GVQEKFGVTPDLTTL---GKII-GGGL 273 (427)
T ss_dssp EEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTT-CHHHHTTCCCSEEEE---CGGG-GTTS
T ss_pred eEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eeccc-chHHhcCCCHHHHhh---hhcc-CCCc
Confidence 66677788 334565 567788999999999999999999999987 44543 233444444445544 5985 5688
Q ss_pred eeEEEEeeCCCCcccchhHHHHHHhhh----hhccCcchHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCC
Q 014603 263 RLGWLVTSDPNGILQDSGIVDSIKSFL----NISSDPATFIQGAVPQILEKTEE-EFFSKITDILRETADICCDRLKEIP 337 (422)
Q Consensus 263 r~G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~ 337 (422)
++|.++++ +++.+.+.... ..+.+.++++++++.+.|+...+ ...++..+.-+..++.+.+..++.+
T Consensus 274 p~~a~~~~--------~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 345 (427)
T d2gsaa_ 274 PVGAYGGK--------REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETG 345 (427)
T ss_dssp CCEEEEEC--------HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeeeeh--------HHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcC
Confidence 99998885 46666655422 23457789999999999886442 2333333333333334443334442
Q ss_pred CCCCCCCCCCceEEEEecCccccc-----CCCCH---HHHHHHHHHhcCeEEecCCCCCCCCeEEEEeccChHHHHHHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLE-----GINSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALEDGLG 409 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~---~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~l~~~~~ 409 (422)
+.......++++. +.+...... ...+. ..+...+ .++||++.|+.. ..+-+++.+++++|+++++
T Consensus 346 -~~~~v~~~ggm~~-i~~~~~~v~~~~~~~~~d~~~~~~~~~~l-l~~Gv~l~p~~~----~~~~~~l~~Te~dId~~l~ 418 (427)
T d2gsaa_ 346 -HAACGGQVSGMFG-FFFTEGPVHNYEDAKKSDLQKFSRFHRGM-LEQGIYLAPSQF----EAGFTSLAHTEEDIDATLA 418 (427)
T ss_dssp -CCCEEEEETTEEE-EESSSCCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTT----SCEECCTTCCHHHHHHHHH
T ss_pred -CCcEEcccCCeEE-EEEeccCCCCHHHhhcccHHHHHHHHHHH-HHCCEEECCCCC----cceeCCCCCCHHHHHHHHH
Confidence 2211122234332 222111000 00011 2233344 466999988542 1123455689999999999
Q ss_pred HHHHHHHH
Q 014603 410 RMKAFYDR 417 (422)
Q Consensus 410 ~l~~~~~~ 417 (422)
++++++++
T Consensus 419 al~~al~~ 426 (427)
T d2gsaa_ 419 AARTVMSA 426 (427)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=8.2e-20 Score=169.82 Aligned_cols=308 Identities=12% Similarity=0.083 Sum_probs=203.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCC
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPG 143 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~ 143 (422)
++-++++.+.++.+.. ..+ +...++++.++++++ .+.++++++||+|+.+++.++ +++||+|+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~-~~G--~~v~~~E~~la~~~g--------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 12 AEELAAVKTVLDSGWI-TTG--PKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp HHHHHHHHHHHHHTCC-SSS--HHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred HHHHHHHHHHHhcCCC-cCC--HHHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 5556778888776533 223 347899999999993 357899999999999999998 7899999999999
Q ss_pred ccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcc
Q 014603 144 FPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223 (422)
Q Consensus 144 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~ 223 (422)
|.+........|.+++.+++++ +.+.+|++.|++.++++++++++++ ..|... ++.+|.++|+++|++||+|+
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~-~~~~~d~~~l~~~i~~~tkaIi~~h---~~G~~~---~~~~i~~i~~~~~i~vIeD~ 153 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPVH---YAGAPA---DLDAIYALGERYGIPVIEDA 153 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCBC---GGGCCC---CHHHHHHHHHHHTCCBCEEC
T ss_pred ccccccchhccccceeeecccc-cccCCCHHHHHHhcCCCCeEEEEeC---CCCCcc---chhHHHHHHHhcCceEEecc
Confidence 9999999999999999999876 4567999999999999999988764 577763 67888889999999999999
Q ss_pred ccccccc-CCCCCCCccccCCCCCeEEEecC--ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhc--------
Q 014603 224 VYDHLAF-GNTPFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-------- 292 (422)
Q Consensus 224 ~~~~~~~-~~~~~~~~~~~~~~~~~i~i~s~--sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 292 (422)
+|+.... .+. ..... + ..+.|| +|.+...+ .|.+++++ +++.++++......
T Consensus 154 a~a~g~~~~~~---~~g~~---g--~~~~Sf~~~K~l~~g~--GG~i~t~~-------~~l~~~~~~~~~~g~~~~~~~~ 216 (376)
T d1mdoa_ 154 AHATGTSYKGR---HIGAR---G--TAIFSFHAIKNITCAE--GGIVVTDN-------PQFADKLRSLKFHGLGVDAWDR 216 (376)
T ss_dssp TTCTTCEETTE---ETTSS---S--EEEEECCTTSSSCSSS--CEEEEESC-------HHHHHHHHHHTBTTEECC----
T ss_pred chhccCeeCCe---ecccc---c--CccccCCCcCCCCCCC--CCEEEEec-------hhHHHHHHhhcccCCccccccc
Confidence 9986431 111 11112 1 234454 58764322 47777764 56666665543211
Q ss_pred -----------------cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC---ce-EE
Q 014603 293 -----------------SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG---SM-FV 351 (422)
Q Consensus 293 -----------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---g~-~~ 351 (422)
...+....+.+..-|. .+++..++.++..+.+.+.|++++.+........ .. .+
T Consensus 217 ~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~-----~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 291 (376)
T d1mdoa_ 217 QSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-----KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLF 291 (376)
T ss_dssp -------CCEESSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCE
T ss_pred ccccccccccchhcccccccchhhhhhhhhhhh-----hhhHHHHHHhhhhhhhhhhccccccccccccccccccccccc
Confidence 1112222222222233 3566677778888888899988755442212111 11 11
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC-----------CC----------CCeEEEEec--cChHHHHHHH
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-----------GL----------KDWLRITFA--VEPSALEDGL 408 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-----------~~----------~~~iRis~~--~~~~~l~~~~ 408 (422)
.+.++.... . .+..++...| +++||.+.+.... .. .+.+.+-+. .+++++++.+
T Consensus 292 ~~~~~~~~~-~-~~Rd~l~~~L-~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~ 368 (376)
T d1mdoa_ 292 IIRVDEARC-G-ITRDALMASL-KTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVI 368 (376)
T ss_dssp EEECCHHHH-S-SCHHHHHHHH-HHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHH
T ss_pred ccccccccc-h-hhHHHHHHHH-HHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHH
Confidence 222221110 0 0223455555 7779988654221 00 344555444 5789999999
Q ss_pred HHHHHHH
Q 014603 409 GRMKAFY 415 (422)
Q Consensus 409 ~~l~~~~ 415 (422)
+.|++++
T Consensus 369 ~~i~~i~ 375 (376)
T d1mdoa_ 369 TALHQIA 375 (376)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=1.2e-19 Score=165.19 Aligned_cols=225 Identities=17% Similarity=0.139 Sum_probs=167.9
Q ss_pred CCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hCC
Q 014603 82 CYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HSH 155 (422)
Q Consensus 82 ~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g 155 (422)
.|.. .+....|+++++++- ..+..+++++|++|+.+ +.+++++||+|++..+.|.+.....+ ..|
T Consensus 42 ~Y~R~~nPt~~~le~~la~LE--------~~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~g 112 (380)
T d1ibja_ 42 DYTRSGNPTRDALESLLAKLD--------KADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG 112 (380)
T ss_dssp SBTTTCCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT
T ss_pred eeeCCCChHHHHHHHHHHHHc--------CCceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhcccc
Confidence 4554 233457777787776 34578889999999975 55788999999999999987755544 346
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF 235 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~ 235 (422)
+.+..+.. .++++++++++++++++++..|.||+..+. |+++|+++|+++|+++|+|..+.... ..
T Consensus 113 i~~~~~d~-------~~~~~~~~ai~~~t~li~~EtpsNP~l~v~---Di~~i~~iA~~~g~~~vVDnT~atP~----~~ 178 (380)
T d1ibja_ 113 VVVKRVNT-------TKLDEVAAAIGPQTKLVWLESPTNPRQQIS---DIRKISEMAHAQGALVLVDNSIMSPV----LS 178 (380)
T ss_dssp CEEEEECT-------TSHHHHHHHCCSSEEEEEECSSCTTTCCCC---CHHHHHHHHHTTTCEEEEECTTTCTT----TC
T ss_pred ccccccCc-------chHHHHHHHhccCccEEEeccccccccccc---cHHHHHHHHHHcCCeEEeeccccccc----cc
Confidence 66665532 377899999999999999999999999994 78888999999999999999986421 12
Q ss_pred CCccccCCCCCeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHhhhhh-ccCcchHHHHHHHHHHhhchHH
Q 014603 236 VPMGVFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKSFLNI-SSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 236 ~~~~~~~~~~~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
.++ .++.| +++.|++|.+++.|-- .|.++.++ ..+.+.+...... ....++...+.+..-|+.
T Consensus 179 ~Pl-~~GaD---iVvhS~TKyi~GhsDv~~G~v~~~~-------~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T---- 243 (380)
T d1ibja_ 179 RPL-ELGAD---IVMHSATKFIAGHSDVMAGVLAVKG-------EKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT---- 243 (380)
T ss_dssp CGG-GTTCS---EEEEETTTTTTCSSCCCCEEEEECS-------HHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT----
T ss_pred ccc-ccCCC---EEEecccceeccccCccccccccch-------hhHHHHHHhhccccCCcCCHHHHHHHHhcchh----
Confidence 222 34444 9999999998775543 45555542 3566666655543 346788888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKP 345 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 345 (422)
+..+.++..++...+.+.|+++|.+..+.+|
T Consensus 244 -l~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP 274 (380)
T d1ibja_ 244 -MALRIEKQQENARKIAMYLSSHPRVKKVYYA 274 (380)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTCCEEECT
T ss_pred -hhhhHHHHHHHHHHHHHHHHhCCCeeEEecc
Confidence 7778888999999999999998876644444
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.86 E-value=6.2e-19 Score=161.04 Aligned_cols=288 Identities=15% Similarity=0.135 Sum_probs=197.4
Q ss_pred CCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----hhCC
Q 014603 82 CYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARA----THSH 155 (422)
Q Consensus 82 ~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----~~~g 155 (422)
.|+. .+....|+++++++- ..+..+++++|++|+..++.+++++||.|++....|.+....+ ...|
T Consensus 60 ~Y~R~~nPt~~~LE~~la~LE--------gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g 131 (398)
T d1qgna_ 60 EYGRYGNPTTVVLEEKISALE--------GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG 131 (398)
T ss_dssp CBGGGCCHHHHHHHHHHHHHH--------TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred eecCCCChHHHHHHHHHHHHh--------CCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccc
Confidence 4554 234567888888876 3467899999999999999999999999999999998765443 3456
Q ss_pred CeEEEeeccCCCCcccCHHHH-HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAV-EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTP 234 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l-~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~ 234 (422)
+.+..+.. .+.+.. +....++++++++..|.||+..+. |+++|+++|+++|+++|+|..+.... .
T Consensus 132 i~~~~~~~-------~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~---Di~~ia~ia~~~g~~~vVDnT~atP~----~ 197 (398)
T d1qgna_ 132 ITATVIDP-------ADVGALELALNQKKVNLFFTESPTNPFLRCV---DIELVSKLCHEKGALVCIDGTFATPL----N 197 (398)
T ss_dssp CEEEEECS-------SCHHHHHHHHHHSCEEEEEEESSCTTTCCCC---CHHHHHHHHHHTTCEEEEECTTTCTT----T
T ss_pred cccccccc-------cchhhhhhhhccccceEEEccCccccccccc---hHHHHHHHHhhcCCEEEecceeeccc----c
Confidence 67666542 233433 445678999999999999999984 78899999999999999999986411 1
Q ss_pred CCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhchHH
Q 014603 235 FVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTEEE 313 (422)
Q Consensus 235 ~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~ 313 (422)
..+ ..++.| +++.|.+|.+++.+--+|.++..+ +++...++.... .....++...+.+..-|+.
T Consensus 198 ~~P-l~~GaD---iVihS~TKy~~Ghsdv~~G~v~~~-------~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T---- 262 (398)
T d1qgna_ 198 QKA-LALGAD---LVLHSATKFLGGHNDVLAGCISGP-------LKLVSEIRNLHHILGGALNPNAAYLIIRGMKT---- 262 (398)
T ss_dssp CCT-TTTTCS---EEEECTTTTTTCSSSCCCEEEEEC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG----
T ss_pred CCc-hhhCCC---EEEEechhhcCcccceeehhhcch-------hhhhhhhhhhcccCCCcCCHHHHHHHHhcchH----
Confidence 122 233444 999999999877654444444432 456666666554 3447788888888888876
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhc
Q 014603 314 FFSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEE 377 (422)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (422)
+.-+.++..++...+.+.|+++|.+.-+.+|. .|..+.+.+.. +.+.+.+++++-
T Consensus 263 -L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g--------~~~~a~~f~~~L 333 (398)
T d1qgna_ 263 -LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG--------DLLTTAKFVDAL 333 (398)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS--------CHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecC--------CHHHHHHHHHcC
Confidence 77788888999999999999887765343442 13334444542 222333444443
Q ss_pred CeEE-ec--CCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 378 SVIV-LP--GITV----------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 378 gi~v-~~--g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
.+.- .+ |... +. ++.||+|++. |+.+.+++.|++++++
T Consensus 334 ~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl--Ed~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 334 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS 397 (398)
T ss_dssp SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHhc
Confidence 3322 22 2111 11 4689999997 4566667888887765
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.85 E-value=1.5e-19 Score=170.89 Aligned_cols=339 Identities=14% Similarity=0.090 Sum_probs=212.2
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
..-+|||-+...+ .++.+..+.++ .-+ ...|+..+...+|++.+++++ ..+.++++++|+.|+
T Consensus 41 ~~v~iDl~sDs~t----~am~~~~~aa~----~~G-Dd~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An 103 (456)
T d1c7ga_ 41 KDIYIDLLTDSGT----NAMSDKQWAGM----MIG-DEAYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAE 103 (456)
T ss_dssp GGCSEECSCSSSC----CCEEHHHHHHT----TSC-CCCSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHH
T ss_pred cceeeEcccCCCc----ccchHHHHHHH----hcc-chhccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHH
Confidence 3446888766544 23344444433 222 246888788899999999999 456889999999999
Q ss_pred HHHHHHhcCCCCEEEecCCCccchHHHHhhCCCeEEEeecc--------CCCCcccCHHHHHHhhcC----CceEEEEeC
Q 014603 124 EVILTVLARPGANILLPRPGFPYYEARATHSHLEVRHFDLL--------PAKGWEVDLDAVEALADE----NTVALVIIN 191 (422)
Q Consensus 124 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~d~~~l~~~~~~----~~~~i~i~~ 191 (422)
.+++++++++||.|+.....+ .........|..++.+... ....+.+|++.|++.+++ ++..+++.+
T Consensus 104 ~~a~~~l~~~Gd~Vi~~~~f~-~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~ 182 (456)
T d1c7ga_ 104 NLLSQLAIKPGQYVAGNMYFT-TTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAV 182 (456)
T ss_dssp HHHHHHHCCTTEEEEESSCCH-HHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred HHHHHHhcCCCCeEecCcchH-HHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeee
Confidence 999999999999998776533 3444445567776655431 112357899999998754 345778889
Q ss_pred CCCCc-ccccCHHHHHHHHHHHHHcCcEEEEcccccccc--c-----CCCCCCCcccc----CCCCCeEEEecCccccCC
Q 014603 192 PGNPC-GNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA--F-----GNTPFVPMGVF----GSIVPVLTLGSISKRWIV 259 (422)
Q Consensus 192 p~npt-G~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~--~-----~~~~~~~~~~~----~~~~~~i~i~s~sK~~~~ 259 (422)
++|+. |..++.+++++|.++|++||+.+++|+++.... + .+....++..+ ....+ ++..|++|.++.
T Consensus 183 ~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad-~~s~s~~K~~~~ 261 (456)
T d1c7ga_ 183 TVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYAD-GCTMSGKKDCLV 261 (456)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEEEETTTTTCC
T ss_pred cccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccc-cEEEeccccccc
Confidence 98865 578899999999999999999999999975311 0 00000111110 00111 566799999765
Q ss_pred CCceeEEEEeeCCCCcccchhHHHHHHhhhhh------ccCcchHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHH
Q 014603 260 PGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI------SSDPATFIQGAVPQILEKT-EEEFFSKITDILRETADICCDR 332 (422)
Q Consensus 260 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~ 332 (422)
++ -|++++++ +++.++++..... .+..+.....++...+.+. ..+++ ++..++.++|.+.
T Consensus 262 ~~--GG~i~~~~-------~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l----~~r~~~~~~L~e~ 328 (456)
T d1c7ga_ 262 NI--GGFLCMND-------EEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYI----EHRVKQVRYLGDK 328 (456)
T ss_dssp SS--CEEEEESC-------HHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHH----HHHHHHHHHHHHH
T ss_pred cc--eeEEEcCC-------HHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHH----HHHHHHHHHHHHH
Confidence 53 37777764 4566666554321 1122223333333333321 12222 3334555677778
Q ss_pred hhcCCCCCCCCCCCCceEEEEecCcc----cccCCCCHHHHHHHHHHhcCeEEecCCCC-------------CCCCeEEE
Q 014603 333 LKEIPCITCPKKPEGSMFVMVKLNYS----LLEGINSDMEFALKLAKEESVIVLPGITV-------------GLKDWLRI 395 (422)
Q Consensus 333 L~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-------------~~~~~iRi 395 (422)
|++. ++.++ .|.++...++..... ..... ....+...+..+.||...+...+ .....+|+
T Consensus 329 L~~~-g~~vv-~p~g~~~v~vda~~~~~~i~~~~~-~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRL 405 (456)
T d1c7ga_ 329 LREA-GVPIV-EPTGGHAVFLDARRFCPHLTQDQF-PAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRL 405 (456)
T ss_dssp HHHT-TCCBC-SSCCSSEEEEEHHHHCTTSCGGGC-HHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEE
T ss_pred HHhc-cCCcc-cCCCCcceeEechhhccCCCcccc-cHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEE
Confidence 8877 66533 566676666643211 00111 24556666667779875542211 11346999
Q ss_pred Eec---cChHHHHHHHHHHHHHHHH
Q 014603 396 TFA---VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 396 s~~---~~~~~l~~~~~~l~~~~~~ 417 (422)
+++ .++++||..++.|+++.++
T Consensus 406 aip~~~~T~e~iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 406 TIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred ecCcccCCHHHHHHHHHHHHHHHhh
Confidence 987 3889999999999998754
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.85 E-value=6.4e-20 Score=172.91 Aligned_cols=354 Identities=15% Similarity=0.092 Sum_probs=215.0
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQA 122 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a 122 (422)
+|+.+|||..|......+ ..+|++.+++.+++.+... .......+.+..+++.|.+..+ -..+.++++++|++|
T Consensus 39 dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~---~~~~~~~~~~~~la~~L~~~~~--~~~~~v~f~~sGseA 112 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLG-HCHPEIVSVIGEYAGKLDH---LFSEMLSRPVVDLATRLANITP--PGLDRALLLSTGAES 112 (431)
T ss_dssp TCCEEEETTHHHHTCTTC-BTCHHHHHHHHHHHHHCCC---CCTTCCCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHH
T ss_pred CCCEEEEcccCHHhhhhc-CCCHHHHHHHHHHHhhccc---cccccccHHHHHHHHHHHHhCC--cccceeeecccccch
Confidence 688999998875443233 3579999999999986432 1111122333445555544322 245789999999999
Q ss_pred HHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCC------------eEEEeeccCCC-------CcccCH---HHHHH
Q 014603 123 IEVILTVLA--RPGANILLPRPGFPYYEARATHSHL------------EVRHFDLLPAK-------GWEVDL---DAVEA 178 (422)
Q Consensus 123 ~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~-------~~~~d~---~~l~~ 178 (422)
++.+++... ...++|+.....|++....+...+. ....++..... ....+. +.++.
T Consensus 113 ~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (431)
T d1zoda1 113 NEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFD 192 (431)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHH
Confidence 999988642 2347899999999887655543221 11122211100 001112 22222
Q ss_pred hh---cCCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecC
Q 014603 179 LA---DENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSI 253 (422)
Q Consensus 179 ~~---~~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~ 253 (422)
.+ .++..+.++..| +...|. .+|++.+++|.++|++||+++|.||++.++.++|... ....++..++++++
T Consensus 193 ~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~-~~~~~gv~PDi~~~--- 268 (431)
T d1zoda1 193 LIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-ACQRDGVTPDILTL--- 268 (431)
T ss_dssp HHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-THHHHTCCCSEEEE---
T ss_pred HHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccc-ccccCCCCcchhcc---
Confidence 22 345677778888 333455 5788899999999999999999999999987777543 33334444444444
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh---hhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL---NISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADIC 329 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l 329 (422)
+|.+ ..|+.++.+++. +++........ ..+.+.++++++++.+.|+... +..+++..+.-+...+.+
T Consensus 269 gK~l-~gG~p~~av~~~--------~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l 339 (431)
T d1zoda1 269 SKTL-GAGLPLAAIVTS--------AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGL 339 (431)
T ss_dssp CHHH-HTTSSCEEEEEC--------HHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cccc-ccccccceeeee--------ecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh
Confidence 6994 667888888875 34555543322 2345778889999888887644 334444444444555556
Q ss_pred HHHhhcCCCCCCCCCCCCceEEEEecCccc---ccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHH
Q 014603 330 CDRLKEIPCITCPKKPEGSMFVMVKLNYSL---LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSAL 404 (422)
Q Consensus 330 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l 404 (422)
.+.+++.+.+. . ...-|.++.+.+.... .........+...+ .++|+....-......+.+|++++ .++++|
T Consensus 340 ~~~~~~~~~i~-~-vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~-~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~ei 416 (431)
T d1zoda1 340 LDLMERFDCIG-D-VRGRGLLLGVEIVKDRRTKEPADGLGAKITREC-MNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEI 416 (431)
T ss_dssp HHHHHHCTTEE-E-EEEETTEEEEEEEEETTTTEECTTHHHHHHHHH-HHTTEECCEECCTTSCCEEEECCCTTCCHHHH
T ss_pred hhhhhcCCCeE-E-EeecceEEEEEEecCCcccCccHHHHHHHHHHH-HHhCcccCeeeecCCCCEEEEECCCCCCHHHH
Confidence 66666664332 1 1223555555552210 00001133444544 566876432112223678999987 789999
Q ss_pred HHHHHHHHHHHHHh
Q 014603 405 EDGLGRMKAFYDRH 418 (422)
Q Consensus 405 ~~~~~~l~~~~~~~ 418 (422)
++++++|++++++.
T Consensus 417 d~~~~~l~~al~~v 430 (431)
T d1zoda1 417 DLGLSLLGQAIERA 430 (431)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=6.7e-19 Score=161.04 Aligned_cols=289 Identities=13% Similarity=0.144 Sum_probs=195.9
Q ss_pred CCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hCC
Q 014603 82 CYSS--TVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HSH 155 (422)
Q Consensus 82 ~y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g 155 (422)
.|.. .+....+++.++++- ..+..+++++|++|+..++.+++++||+|++....|.+....+. ..|
T Consensus 51 ~Y~R~~nPt~~~le~~la~LE--------g~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~G 122 (391)
T d1cl1a_ 51 FYGRRGTLTHFSLQQAMCELE--------GGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG 122 (391)
T ss_dssp CCTTTCCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred EeECCCChhHHHHHHHHHHHh--------CCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccc
Confidence 4554 233557777777765 34678999999999999999999999999999999987655443 456
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHc--CcEEEEcccccccccCCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKL--GIMVIADEVYDHLAFGNT 233 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~--~~~li~D~~~~~~~~~~~ 233 (422)
+++..+.. .|.+.+++.++++++++++..|.||+..+. ++++++++|+++ |+++|+|..+....
T Consensus 123 i~~~~~d~-------~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~---Di~~i~~~a~~~~~g~~~vVDnT~atP~---- 188 (391)
T d1cl1a_ 123 VTTSWFDP-------LIGADIVKHLQPNTKIVFLESPGSITMEVH---DVPAIVAAVRSVVPDAIIMIDNTWAAGV---- 188 (391)
T ss_dssp CEEEEECT-------TCGGGGGGTCCTTEEEEEEESSCTTTCCCC---CHHHHHHHHHHHCTTCEEEEECTTTTTT----
T ss_pred cccccccC-------ccccccccccccccceeeecccCccccccc---ccHHHHHHHHhccCCcEEEEeccccchh----
Confidence 66666542 367888999999999999999999999995 577777777664 99999999986521
Q ss_pred CCCCccccCCCCCeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhhch
Q 014603 234 PFVPMGVFGSIVPVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEKTE 311 (422)
Q Consensus 234 ~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~ 311 (422)
...++ .++.| +++.|.+|.+++-+-- .|.++.+ +++...+..... .....++..++.+..-|+.
T Consensus 189 ~~~Pl-~~GaD---ivvhS~TKy~~GhsdvlgG~vv~~--------~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-- 254 (391)
T d1cl1a_ 189 LFKAL-DFGID---VSIQAATKYLVGHSDAMIGTAVCN--------ARCWEQLRENAYLMGQMVDADTAYITSRGLRT-- 254 (391)
T ss_dssp SSCGG-GGTCS---EEEEETTTTTTCSSSCCCEEEEEC--------TTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT--
T ss_pred hhccc-ccccc---eEEeecchhccccccccccceecc--------ccccccchhhhhcccccCCchhhhhhhccchh--
Confidence 12222 34444 9999999998765533 4555543 234444444432 3446677888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------CceEEEEecCcccccCCCCHHHHHHHHH
Q 014603 312 EEFFSKITDILRETADICCDRLKEIPCITCPKKPE-----------------GSMFVMVKLNYSLLEGINSDMEFALKLA 374 (422)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (422)
+.-+.++..++...+.+.|+++|.+..+.+|. +|.+ .+.+... ...+.+.+++
T Consensus 255 ---L~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~-sf~l~~~------~~~e~~~~f~ 324 (391)
T d1cl1a_ 255 ---LGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLF-SFVLKKK------LNNEELANYL 324 (391)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEE-EEEESSC------CCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcce-eeeecCC------CCHHHHHHHH
Confidence 67778888899999999999987765444441 2322 3344321 1222233444
Q ss_pred HhcCeEE---ecCCCC--------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHHh
Q 014603 375 KEESVIV---LPGITV--------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 375 ~~~gi~v---~~g~~~--------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.-.++- .-|... +. ++.||+|++. |+++.+++.|++++++.
T Consensus 325 d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~~i 390 (391)
T d1cl1a_ 325 DNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL--EDVDDLIADLDAGFARI 390 (391)
T ss_dssp TTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS--SCHHHHHHHHHHHHHHT
T ss_pred HcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHhh
Confidence 4333321 112111 11 4679999997 57777788888888764
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.85 E-value=1.3e-18 Score=161.41 Aligned_cols=312 Identities=14% Similarity=0.157 Sum_probs=207.6
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCC
Q 014603 64 ASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRP 142 (422)
Q Consensus 64 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~ 142 (422)
..+-.+++.+.++.+... +.......++++.+|+++ ..+.++.+++||.|+.+++.++ +++||+|+++..
T Consensus 12 ~~~~~~~~~~~l~~g~~~-~~~g~~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~ 82 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWW-RMGGDEVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVIVPAF 82 (384)
T ss_dssp CHHHHHHHHHHHHTSCCB-TTTCSHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESS
T ss_pred CHHHHHHHHHHHHcCCee-ecCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecc
Confidence 456677888888775321 122334789999999998 3457899999999999999997 689999999999
Q ss_pred CccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEc
Q 014603 143 GFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIAD 222 (422)
Q Consensus 143 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 222 (422)
+|......+...|..++.+++++ ..+.+|++.+++.+.+++++++++ +..|.. .++.+|.++|+++|+++|+|
T Consensus 83 t~~a~~~ai~~~g~~p~~~d~~~-~~~~~d~~~~~~~i~~~tk~i~~~---~~~g~~---~d~~~i~~~~~~~~i~lieD 155 (384)
T d1b9ha_ 83 TFISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRTKVIMPV---HMAGLM---ADMDALAKISADTGVPLLQD 155 (384)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCC---CCHHHHHHHHHHHTCCBCEE
T ss_pred ccccccccccccccccccccccc-cccccchhhhcccccccccccccc---cccccc---cccccchhhhhhhhhhhhhh
Confidence 99999999999999999998865 456789999999999999988644 455555 46888899999999999999
Q ss_pred cccccccc-CCCCCCCccccCCCCCeEEEe--cCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh--------
Q 014603 223 EVYDHLAF-GNTPFVPMGVFGSIVPVLTLG--SISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI-------- 291 (422)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~--s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 291 (422)
.+++.+.. .|. .+..++. +.+. +.+|.++.. ..|+++++++ ++.+.++.....
T Consensus 156 ~a~a~ga~~~g~---~~g~~g~----~~~~Sf~~~K~i~~g--~GG~i~t~~~-------~~~~~~~~~~~~g~~~~~~~ 219 (384)
T d1b9ha_ 156 AAHAHGARWQGK---RVGELDS----IATFSFQNGKLMTAG--EGGAVVFPDG-------ETEKYETAFLRHSCGRPRDD 219 (384)
T ss_dssp CTTCTTCEETTE---EGGGSSS----CEEEECCTTSSSCSS--SCEEEEECTT-------CHHHHHHHHHHTBTTCCTTC
T ss_pred hceecccccCCE---ecCcccc----cceeccccccccccc--ccchhhhhhH-------HHHHHHHHHHhcCCCCcccc
Confidence 99986442 222 1222322 3344 457875332 2588888753 455555443321
Q ss_pred ----------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----C-ceEEEEecC
Q 014603 292 ----------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----G-SMFVMVKLN 356 (422)
Q Consensus 292 ----------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~-g~~~~~~~~ 356 (422)
....+.+..+.+...|+. +++..++-+++.+.+.+.|++++++.....+. . ..+..+.++
T Consensus 220 ~~~~~~~~G~n~rms~l~Aaig~~qL~~-----ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (384)
T d1b9ha_ 220 RRYFHKIAGSNMRLNEFSASVLRAQLAR-----LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIP 294 (384)
T ss_dssp SSCCCCSCCCBCBCBHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECT
T ss_pred ccccccccccccccccchhhhhhhhhhh-----cccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceec
Confidence 122344444444444543 56666677778888888898887653221111 1 123334443
Q ss_pred cccccCCCCHH-HHHHHHHHhcCeEEecCCCC----------CC-------------------CCeEEEEec--cC-hHH
Q 014603 357 YSLLEGINSDM-EFALKLAKEESVIVLPGITV----------GL-------------------KDWLRITFA--VE-PSA 403 (422)
Q Consensus 357 ~~~~~~~~~~~-~~~~~l~~~~gi~v~~g~~~----------~~-------------------~~~iRis~~--~~-~~~ 403 (422)
... .... ++...| +++||.+.+.... +. ...+.+-+. .+ ++|
T Consensus 295 ~~~----~~~Rd~l~~~L-~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~e 369 (384)
T d1b9ha_ 295 GLT----EERRNALVDRL-VEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPE 369 (384)
T ss_dssp TCC----HHHHHHHHHHH-HHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred ccc----cccHHHHHHHH-HHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHH
Confidence 210 0122 345554 7789987764221 00 134555554 34 579
Q ss_pred HHHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYDR 417 (422)
Q Consensus 404 l~~~~~~l~~~~~~ 417 (422)
+++.++.|++++.+
T Consensus 370 i~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 370 LHATAEIIADAVAR 383 (384)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.4e-18 Score=159.57 Aligned_cols=293 Identities=20% Similarity=0.169 Sum_probs=195.6
Q ss_pred CCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHH----HHhhCC
Q 014603 82 CYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEA----RATHSH 155 (422)
Q Consensus 82 ~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~----~~~~~g 155 (422)
.|+.. +....|+++|+++- ..+..+++++|++|+..++.+++++||+|++....|.+... .....|
T Consensus 51 ~YsR~~nPT~~~LE~~la~LE--------~~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~g 122 (421)
T d2ctza1 51 IYSRIMNPTVDVLEKRLAALE--------GGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122 (421)
T ss_dssp SCBTTBCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred eecCCCCHHHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhcc
Confidence 45542 33567777777776 34578899999999999999999999999999999977644 444678
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPF 235 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~ 235 (422)
+.+..+... -..+.+++.++++++++++..|.||+..+ .|+++|+++|+++|+++|+|..++.. +...
T Consensus 123 i~~~~~d~~------~~~~~~~~~~~~~t~li~~EtpsNP~l~v---~Di~~i~~iA~~~g~~~vvDnT~a~t---P~~~ 190 (421)
T d2ctza1 123 IEVRFTSRE------ERPEEFLALTDEKTRAWWVESIGNPALNI---PDLEALAQAAREKGVALIVDNTFGMG---GYLL 190 (421)
T ss_dssp CEEEECCTT------CCHHHHHHHCCTTEEEEEEESSCTTTCCC---CCHHHHHHHHHHHTCEEEEECGGGGG---GTSC
T ss_pred ccceecccc------cCcchhccccCCCceEEEEcCCCcceeEe---cchHHHHHHHHhcCCceEeccccccc---ceec
Confidence 777765421 13456667788899999999999999999 47999999999999999999998621 1111
Q ss_pred CCccccCCCCCeEEEecCccccCCCCcee-EEEEeeCCCCcccc------------------------hhHHHHHHh--h
Q 014603 236 VPMGVFGSIVPVLTLGSISKRWIVPGWRL-GWLVTSDPNGILQD------------------------SGIVDSIKS--F 288 (422)
Q Consensus 236 ~~~~~~~~~~~~i~i~s~sK~~~~~G~r~-G~~~~~~~~~~~~~------------------------~~~~~~~~~--~ 288 (422)
.+ ..++.| +++.|.+|.+++-|--+ |.++.++ +..+.. ..++.+.+. .
T Consensus 191 ~P-l~~GaD---iVvhS~TKyl~GHsD~l~G~vv~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (421)
T d2ctza1 191 RP-LAWGAA---LVTHSLTKWVGGHGAVIAGAIVDGG-NFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGL 265 (421)
T ss_dssp CG-GGGTCS---EEEEETTTTTTCSSCCCCEEEEECS-CSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHH
T ss_pred cc-cccCCc---EEEEechhhccCCCCeEEEEEEcCC-cchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHH
Confidence 12 234555 99999999987765444 5555433 222110 001111111 1
Q ss_pred hhhccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-----------------CceEE
Q 014603 289 LNISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE-----------------GSMFV 351 (422)
Q Consensus 289 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------------~g~~~ 351 (422)
.......++...+.+..-|+. +.-+.++..++...+.+.|+++|.+.-+.+|. .|.++
T Consensus 266 ~~~G~~~sP~~a~l~~rgl~T-----L~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~ 340 (421)
T d2ctza1 266 RDQGQALGPFEAWVVLLGMET-----LSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVL 340 (421)
T ss_dssp HHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEE
T ss_pred HhccCCCCHHHHHHHhcCCcc-----hhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEE
Confidence 123457788888888888876 67788888899999999999987764343441 24455
Q ss_pred EEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC---------------------------CCCeEEEEeccChHHH
Q 014603 352 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---------------------------LKDWLRITFAVEPSAL 404 (422)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~---------------------------~~~~iRis~~~~~~~l 404 (422)
.+.+.. ..+.+.++++.-.++- .+...| .++.||+|++. |+.
T Consensus 341 sf~l~~--------~~~~a~~f~~~L~l~~-~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liRlSvGl--Ed~ 409 (421)
T d2ctza1 341 TFGLKG--------GYEAAKRFISRLKLIS-HLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--EHV 409 (421)
T ss_dssp EEEETT--------HHHHHHHHHHTCSSSE-ECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCH
T ss_pred EEEecC--------CHHHHHHHHHcCCcCe-eccccccccceeeCcccccchhCCHHHHHhcCCCcCeEEEEecc--CCH
Confidence 666642 3344445544444321 111111 14689999996 455
Q ss_pred HHHHHHHHHHH
Q 014603 405 EDGLGRMKAFY 415 (422)
Q Consensus 405 ~~~~~~l~~~~ 415 (422)
+.++..|++++
T Consensus 410 eDLi~DL~qAL 420 (421)
T d2ctza1 410 EDLKAELKEAL 420 (421)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 55667776664
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.84 E-value=1.1e-18 Score=156.60 Aligned_cols=277 Identities=16% Similarity=0.143 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhCCCeEEEeeccCC
Q 014603 91 PARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHSHLEVRHFDLLPA 166 (422)
Q Consensus 91 ~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~~~~~~~ 166 (422)
.|++.+|++- ..+..+++++|++|+..++.+++++||+|++..+.|.+.. ...+..|+++..++.
T Consensus 2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~--- 70 (331)
T d1pffa_ 2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--- 70 (331)
T ss_dssp HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecc---
Confidence 5788899887 3467889999999999999999999999999999997653 345567888877653
Q ss_pred CCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHH-HHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 167 KGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAET-AKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 167 ~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~-~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
.|.+.++++++++++.+++..|.||+..+. ++++++++ ++++|+++|+|..+..... ..+ ..++.|
T Consensus 71 ----~d~~~~~~~i~~~t~~i~~Es~~np~~~v~---d~~~~~~~~a~~~~~~~vVDnT~atp~~----~~p-l~~GaD- 137 (331)
T d1pffa_ 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVI---DIEDAVKQARKQKDILVIVDNTFASPIL----TNP-LDLGVD- 137 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCC---CHHHHHHHHTTSSSCEEEEECTTTHHHH----CCG-GGGTCS-
T ss_pred ----cchhhHhhhcccccceeeeecccccccccc---cchhhhhhhhcccCceEEeecccccccc----ccc-cccCCC-
Confidence 377899999999999999999999999995 56666665 4678999999999864221 112 233444
Q ss_pred CeEEEecCccccCCCCce-eEEEEeeCCCCcccchhHHHHHHh--hhh-hccCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 014603 246 PVLTLGSISKRWIVPGWR-LGWLVTSDPNGILQDSGIVDSIKS--FLN-ISSDPATFIQGAVPQILEKTEEEFFSKITDI 321 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 321 (422)
+++.|.+|.+++-|-- .|+++.+ ++...+.+. ... .....++...+.+..-++. +..+.++
T Consensus 138 --iVv~S~TKy~~Gh~d~~~G~v~~~--------~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-----l~~Rm~~ 202 (331)
T d1pffa_ 138 --IVVHSATKYINGHTDVVAGLVCSR--------ADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRVKR 202 (331)
T ss_dssp --EEEEETTTTTSSSSSCCCEEEEEC--------HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHH
T ss_pred --EEEecchhhcCCCCcccccccccc--------ccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-----HHHHHHH
Confidence 9999999998775544 4555554 233333322 222 2346677777777777766 7778888
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEE-ec-
Q 014603 322 LRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV-LP- 383 (422)
Q Consensus 322 ~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v-~~- 383 (422)
..++...+.+.|+++|.+..+.+|. .|..+.+.+.. .+...+++++-.+.- .+
T Consensus 203 ~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~---------~~~~~~f~d~l~lf~~~~S 273 (331)
T d1pffa_ 203 AAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---------LEKAKKVLDNCHVVSLAVS 273 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---------HHHHHHHHHTCSSSEECSS
T ss_pred HHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc---------HHHHHHHHHhCCcceeccc
Confidence 8999999999999988876455542 23445555642 223344555444322 11
Q ss_pred -CCCC----------------------C-CCCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 384 -GITV----------------------G-LKDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 384 -g~~~----------------------~-~~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
|... + .++.||+|++. |+.+.+++.|+++++.
T Consensus 274 lG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl--E~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 274 LGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC--ENVQDIIDDLKQALDL 329 (331)
T ss_dssp CCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHT
T ss_pred CCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee--CCHHHHHHHHHHHHHH
Confidence 2111 0 04679999997 5666667777777764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=1e-19 Score=173.04 Aligned_cols=315 Identities=13% Similarity=0.052 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCEEEecCHHH-HHHHHHHHh---cCCCCEEEecCCCccchHHHHhhCCCeEEEeeccC
Q 014603 90 LPARRAIADYLNRDLPYKLSPDDVYLTLGCTQ-AIEVILTVL---ARPGANILLPRPGFPYYEARATHSHLEVRHFDLLP 165 (422)
Q Consensus 90 ~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~-a~~~~~~~l---~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (422)
..++..+.+++.+.+|.+.. ...++++|+++ ++.+++.++ ..+++.|+++...|.++...+...|.+++.+...+
T Consensus 93 ~~le~~~~~~~~~l~g~~~~-~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~ 171 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL 171 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHHhCCCcc-cCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec
Confidence 45666677777665554433 34555666554 444444443 45668999999999999999999999988776432
Q ss_pred -CCCcccCHHHHHHhhc----CCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCCCcc
Q 014603 166 -AKGWEVDLDAVEALAD----ENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF-GNTPFVPMG 239 (422)
Q Consensus 166 -~~~~~~d~~~l~~~~~----~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~-~~~~~~~~~ 239 (422)
.+.+.+|+++|++.++ +++.+++++.|++++|.+ +++++|+++|+++|+++++|++|+.... .........
T Consensus 172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~---~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~ 248 (445)
T d3bc8a1 172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGA 248 (445)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeee---hhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhcc
Confidence 3457899999998774 367788899999999999 6799999999999999999999975321 000000001
Q ss_pred ccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhhcc-CcchHHHHHHHHHHhhchHHHHHHH
Q 014603 240 VFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNISS-DPATFIQGAVPQILEKTEEEFFSKI 318 (422)
Q Consensus 240 ~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~ 318 (422)
.++.. .++..|.+|.++.|. ..|+++..+ ..+.+.+........ ......+.+....+ ....+...
T Consensus 249 ~~~~v--d~~~~s~hK~~~~p~-g~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~ 315 (445)
T d3bc8a1 249 RVGRI--DAFVQSLDKNFMVPV-GGAIIAGFN-------EPFIQDISKMYPGRASASPSLDVLITLLSL---GCSGYRKL 315 (445)
T ss_dssp HHSCC--CEEEEEHHHHHSCCS-SCEEEEESC-------HHHHHHHHHHSCSCBCSHHHHHHHHHHHHH---HHHHHHHH
T ss_pred CcCCc--ceEEecCccccccCC-CCceeeeCC-------hHHHHHHHHHHhhcccCcchHHHHHHHHHH---hhhcchhh
Confidence 11111 177789999865543 356676654 345555544332221 22223333332222 23444555
Q ss_pred HHHHHHHHHHHHHHhhcCC---CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe----cCCC-----
Q 014603 319 TDILRETADICCDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGIT----- 386 (422)
Q Consensus 319 ~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~----- 386 (422)
.+...++.+++.+.|+++. +..+...+......+..+.........+..++...| .+.||... ++..
T Consensus 316 ~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~i~~ 394 (445)
T d3bc8a1 316 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSML-FTRQVSGARAVPLGNVQTVSG 394 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHH-HHTTCCSCEEECSCCEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHH-HHcCCCcceeeccccccchhh
Confidence 5555566666666655431 333233455455555544322111111233444444 55576321 1110
Q ss_pred -----CCC------CCeEEEEec--cChHHHHHHHHHHHHHHHHhcccC
Q 014603 387 -----VGL------KDWLRITFA--VEPSALEDGLGRMKAFYDRHAKKQ 422 (422)
Q Consensus 387 -----~~~------~~~iRis~~--~~~~~l~~~~~~l~~~~~~~~~~~ 422 (422)
++. ...+|++++ ++++||+.++++|++++++++++|
T Consensus 395 ~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~ 443 (445)
T d3bc8a1 395 HTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 443 (445)
T ss_dssp EEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 356899887 788999999999999999998764
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.83 E-value=1.5e-19 Score=171.18 Aligned_cols=343 Identities=12% Similarity=0.040 Sum_probs=201.8
Q ss_pred CCCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCC---CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCH
Q 014603 43 DTRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARF---NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGC 119 (422)
Q Consensus 43 ~~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~ 119 (422)
+|+.+|||..|......+ ..+|+|.+++.+++..... ..+.. .....+.+.+++.+....+ -..+.++++++|
T Consensus 51 dG~~ylD~~~g~~~~~lG-h~~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sG 126 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIG-YSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACG 126 (461)
T ss_dssp TSCEEEESSHHHHTCSSC-BTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSH
T ss_pred CCCEEEEcccCHHHHhhc-CCcHHHHHHHHHHHhhhhhcccccccc-cchHHHHHHHHHHHHhhhc--cCcceeeeecch
Confidence 588899998775443223 3578999999988754211 11111 1123455667776654322 245689999999
Q ss_pred HHHHHHHHHHhc----------------------------CCCCEEEecCCCccchHHHHhhCC-Ce-----------EE
Q 014603 120 TQAIEVILTVLA----------------------------RPGANILLPRPGFPYYEARATHSH-LE-----------VR 159 (422)
Q Consensus 120 ~~a~~~~~~~l~----------------------------~~gd~Vl~~~~~~~~~~~~~~~~g-~~-----------~~ 159 (422)
++|++.+++... .+...|+....+||+....+.... .+ ..
T Consensus 127 seAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~ 206 (461)
T d1ohwa_ 127 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP 206 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCC
T ss_pred hhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCc
Confidence 999999887542 123579999999998644443322 11 00
Q ss_pred EeeccCC-CCc-----------ccCHHHHHHhh-----cCCceEEEEeCC-CCCccc-ccCHHHHHHHHHHHHHcCcEEE
Q 014603 160 HFDLLPA-KGW-----------EVDLDAVEALA-----DENTVALVIINP-GNPCGN-VYTYQHLQKIAETAKKLGIMVI 220 (422)
Q Consensus 160 ~~~~~~~-~~~-----------~~d~~~l~~~~-----~~~~~~i~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li 220 (422)
..+.... ... ..+.+.+++.+ .++..+.++..| +...|. .+|++.+++|.++|++||+++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI 286 (461)
T d1ohwa_ 207 IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFL 286 (461)
T ss_dssp EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEE
T ss_pred ccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCccee
Confidence 1111000 000 01233444433 235566677777 444554 5788899999999999999999
Q ss_pred EcccccccccCCCCCCCccccCC--CCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHHh-hhhhccCcch
Q 014603 221 ADEVYDHLAFGNTPFVPMGVFGS--IVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKS-FLNISSDPAT 297 (422)
Q Consensus 221 ~D~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 297 (422)
+||++.++.++|... ....++. .++++ +++|.++ . |++... +....... ....+...++
T Consensus 287 ~DEV~tG~gRtG~~~-~~e~~gi~~~PDiv---~~gK~l~-~----g~~~~~---------~~~~~~~~~~~~~T~~g~p 348 (461)
T d1ohwa_ 287 VDEVQTGGGSTGKFW-AHEHWGLDDPADVM---TFSKKMM-T----GGFFHK---------EEFRPNAPYRIFNTWLGDP 348 (461)
T ss_dssp EECTTTCSSTTSSSS-GGGGGCCSSCCSEE---EECGGGS-S----EEEEEC---------GGGSCSSTTSSCCSCSSCH
T ss_pred ccccccccccccccc-cccccccccCchhh---hhhhccc-c----cccccc---------ccccccccccccccccccc
Confidence 999999988887532 3333332 23344 3469853 2 333332 11111111 1223457778
Q ss_pred HHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHh
Q 014603 298 FIQGAVPQILEKTEEE-FFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE 376 (422)
Q Consensus 298 ~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (422)
++.+++.+.|+...++ .+++..+.-+...+.+.+..++.|.+. ......|.++.+.++... ...++... +.+
T Consensus 349 ~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i-~~vrG~Gl~~~ie~~~~~-----~~~~i~~~-~~~ 421 (461)
T d1ohwa_ 349 SKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI-SRVRGRGTFCSFDTPDES-----IRNKLISI-ARN 421 (461)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTC-EEEEEETTEEEEECSSHH-----HHHHHHHH-HHH
T ss_pred ccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCce-EEeeeeeEEEEEEcCCHH-----HHHHHHHH-HHH
Confidence 8999998888865422 223232222233333333333444321 111234667777776531 13345554 456
Q ss_pred cCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 377 ESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 377 ~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+|+++.+.. .+.||+.++ .+++++++++++|++++.++
T Consensus 422 ~Gll~~~~~----~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 422 KGVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp TTEECEEET----TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEeeCC----CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 799998743 478999876 78999999999999999874
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.83 E-value=8e-18 Score=153.97 Aligned_cols=289 Identities=16% Similarity=0.169 Sum_probs=198.5
Q ss_pred CCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchH----HHHhhC
Q 014603 81 NCYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYE----ARATHS 154 (422)
Q Consensus 81 ~~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~----~~~~~~ 154 (422)
..|+.. +....|++.++++- ..+..+.++||++|+..++.+++++||.|++.+..|.+.. ......
T Consensus 51 ~~YsR~~nPT~~~le~~la~LE--------g~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~ 122 (394)
T d1e5ea_ 51 YIYTRLGNPTVSNLEGKIAFLE--------KTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF 122 (394)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred ceecCCCCHHHHHHHHHHHHHh--------CCcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhcc
Confidence 356542 23456777777765 3457888999999999999999999999999999997653 345567
Q ss_pred CCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHH-HcCcEEEEcccccccccCCC
Q 014603 155 HLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAK-KLGIMVIADEVYDHLAFGNT 233 (422)
Q Consensus 155 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~-~~~~~li~D~~~~~~~~~~~ 233 (422)
|+.+..+.. .|.+.+++.++++++++++..|.||+..+. +++++++.++ ++|+++|+|..+....
T Consensus 123 gi~~~~~d~-------~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~---Di~~~~~~~~~~~g~~vvvDnT~atP~---- 188 (394)
T d1e5ea_ 123 GIQVDFINT-------AIPGEVKKHMKPNTKIVYFETPANPTLKII---DMERVCKDAHSQEGVLVIADNTFCSPM---- 188 (394)
T ss_dssp TCEEEEECT-------TSTTHHHHHCCTTEEEEEEESSCTTTCCCC---CHHHHHHHHHTSTTCEEEEECTTTCTT----
T ss_pred ceeeeccCC-------CCHHHHHHhhcccccEEEEeccCCcceeee---hhhhhhhccccccCeEEEecCcccCcc----
Confidence 888877753 366889999999999999999999999985 5667776555 5689999999986421
Q ss_pred CCCCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHh--hhh-hccCcchHHHHHHHHHHhh
Q 014603 234 PFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKS--FLN-ISSDPATFIQGAVPQILEK 309 (422)
Q Consensus 234 ~~~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~a~~~~l~~ 309 (422)
...+ ..++.| +++.|.+|.+++.+ .-.|.++++ .+.....+. ... ....+++...+.+..-|+.
T Consensus 189 ~~~P-l~~GaD---iVvhS~TKy~~GhsDv~~G~v~~~--------~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T 256 (394)
T d1e5ea_ 189 ITNP-VDFGVD---VVVHSATKYINGHTDVVAGLICGK--------ADLLQQIRMVGIKDITGSVISPHDAWLITRGLST 256 (394)
T ss_dssp TCCG-GGGTCS---EEEEETTTTTTCSSCCCCEEEEEC--------HHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT
T ss_pred cCCc-hhcCCC---EEEechhhhcCCCcccccccccch--------hhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh
Confidence 1222 234444 99999999987654 445666654 344443332 222 2346788888888888876
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----------------CceEEEEecCcccccCCCCHHHHHHHH
Q 014603 310 TEEEFFSKITDILRETADICCDRLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKL 373 (422)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~l 373 (422)
+.-+.++..++...+.+.|+++|.+.-+.+|. .|..+.+.+.. ..+...++
T Consensus 257 -----L~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~--------~~~~a~~f 323 (394)
T d1e5ea_ 257 -----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS--------GFEGAKKL 323 (394)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT--------HHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccC--------CHHHHHHH
Confidence 77788889999999999999988764344441 13333344432 33444555
Q ss_pred HHhcCeEEecCCCCC--------------------------C-CCeEEEEeccChHHHHHHHHHHHHHHHHhc
Q 014603 374 AKEESVIVLPGITVG--------------------------L-KDWLRITFAVEPSALEDGLGRMKAFYDRHA 419 (422)
Q Consensus 374 ~~~~gi~v~~g~~~~--------------------------~-~~~iRis~~~~~~~l~~~~~~l~~~~~~~~ 419 (422)
++.-.++.. +..+| . ++.||+|++. |+.+.++..|+++++.+.
T Consensus 324 ~~~l~l~~~-a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl--Ed~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 324 LDNLKLITL-AVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDALL 393 (394)
T ss_dssp HHTCSSSEE-SSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHhCCccce-eeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHHhh
Confidence 555444221 11111 0 4689999997 567777777777777653
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.81 E-value=1.5e-18 Score=165.72 Aligned_cols=344 Identities=14% Similarity=0.054 Sum_probs=198.9
Q ss_pred CCCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHH
Q 014603 44 TRPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAI 123 (422)
Q Consensus 44 ~~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~ 123 (422)
+..+|||-+...+ .+..+....++. .+ ...|....+..+|++.+++++ ..+.+++++||++|+
T Consensus 41 ~~~~id~~sd~~t----~~~~~~~~a~~~----~g-d~~y~~~~~~~~le~~~a~l~--------g~~~~~~~~sGt~A~ 103 (465)
T d1ax4a_ 41 SAVYIDLLTDSGT----NAMSDHQWAAMI----TG-DEAYAGSRNYYDLKDKAKELF--------NYDYIIPAHQGRGAE 103 (465)
T ss_dssp GGCSEECSCSSSC----CCEEHHHHHHHH----TC-CCCSSSCHHHHHHHHHHHHHH--------CCCEEEEESSHHHHH
T ss_pred cCeeeecccccch----hhhhHHHHHHHh----hh-hhhhccChHHHHHHHHHHHHH--------CCCEEEECCCcHHHH
Confidence 3345666554433 233444444332 22 236887778889999999999 457899999999999
Q ss_pred HHHHHHhcCCCC-------EEEecCCCccchHHHHhhCCCeEEEeecc--------CCCCcccCHHHHHHhhcC---Cc-
Q 014603 124 EVILTVLARPGA-------NILLPRPGFPYYEARATHSHLEVRHFDLL--------PAKGWEVDLDAVEALADE---NT- 184 (422)
Q Consensus 124 ~~~~~~l~~~gd-------~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~d~~~l~~~~~~---~~- 184 (422)
++++.+++++|+ .++...+.|..+.......|..++..... ....+.+|++.+++++++ ..
T Consensus 104 ~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~ 183 (465)
T d1ax4a_ 104 NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNI 183 (465)
T ss_dssp HHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccc
Confidence 999999875443 34444444444455566677776654321 123466899999988753 33
Q ss_pred eEEEEeCCCCCcc-cccCHHHHHHHHHHHHHcCcEEEEccccccccc------C-CCCCCCccccCC---CCCeEEEecC
Q 014603 185 VALVIINPGNPCG-NVYTYQHLQKIAETAKKLGIMVIADEVYDHLAF------G-NTPFVPMGVFGS---IVPVLTLGSI 253 (422)
Q Consensus 185 ~~i~i~~p~nptG-~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~------~-~~~~~~~~~~~~---~~~~i~i~s~ 253 (422)
..++++.++|..| ..++.+++++|.++|++||+++|+|+++..... . +..-........ .-..++..|.
T Consensus 184 ~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~ 263 (465)
T d1ax4a_ 184 VAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSA 263 (465)
T ss_dssp EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEET
T ss_pred cceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeec
Confidence 3444445555444 568999999999999999999999999863211 0 000001110000 0011455566
Q ss_pred ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhh---hh---ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014603 254 SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFL---NI---SSDPATFIQGAVPQILEKTEEEFFSKITDILRETAD 327 (422)
Q Consensus 254 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 327 (422)
+|. +.+++.|+++.++. ..+........ .. .+........++...+.+. ..++..++..++.+
T Consensus 264 ~k~--~~~~~~g~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~---~~~~~~~~~~~~~~ 332 (465)
T d1ax4a_ 264 KKD--PLLNIGGLVAIRDN------EEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG---TEEEYLHYRIGQVK 332 (465)
T ss_dssp TST--TCCSSCEEEEESSC------HHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred ccC--cccccceeEeecch------HHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHh---hhHHHHHHHHHHHH
Confidence 665 44555788887642 12222222211 11 1122222333333333221 12233444555677
Q ss_pred HHHHHhhcCCCCCCCCCCCCceEEEEecCcc----cccCCCCHHHHHHHHHHhcCeEEecCCC-------------CCCC
Q 014603 328 ICCDRLKEIPCITCPKKPEGSMFVMVKLNYS----LLEGINSDMEFALKLAKEESVIVLPGIT-------------VGLK 390 (422)
Q Consensus 328 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~gi~v~~g~~-------------~~~~ 390 (422)
++.+.|++. ++.++ .+.++..++...... ..... ........++.+.||....... +...
T Consensus 333 ~l~~~L~~~-g~~~v-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~ 409 (465)
T d1ax4a_ 333 YLGDRLREA-GIPIQ-YPTGGHAVFVDCKKLVPQIPGDQF-PAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM 409 (465)
T ss_dssp HHHHHHHHT-TCCBC-SSCCSSEEEEESTTTCTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred HHHHHHHhh-cCccc-cCCCcceeeeehhhhcCCCccccc-hhHHHHHHHHHhcCceeccccccccccccccCCccCCCC
Confidence 788888887 55533 566666655543221 00111 2345566667778987553221 1124
Q ss_pred CeEEEEec---cChHHHHHHHHHHHHHHHHh
Q 014603 391 DWLRITFA---VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 391 ~~iRis~~---~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.+|+++. .+++++|++++.|++++++.
T Consensus 410 ~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 410 EFMRLTIARRVYTNDHMDYIADALIGLKEKF 440 (465)
T ss_dssp CEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred CceEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999975 48899999999999988764
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=3.5e-17 Score=147.77 Aligned_cols=339 Identities=13% Similarity=0.070 Sum_probs=222.7
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC---CCC---CHHHHHHHHHHHhhcCCCCCCCCCEEEecC
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS---TVG---ILPARRAIADYLNRDLPYKLSPDDVYLTLG 118 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~---~~g---~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g 118 (422)
.+-|+|--.. | .+++.+++++...+.+....+|+. ..| +.+++....+...+.++ ....+|. ..|
T Consensus 26 ~~~i~LiaSE-----N-~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--a~~anVq-p~S 96 (416)
T d1dfoa_ 26 EEHIELIASE-----N-YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG--ADYANVQ-PHS 96 (416)
T ss_dssp HHSEECCTTC-----C-CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECC-CSS
T ss_pred HcCceEecCc-----c-cCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC--CCcceee-ccc
Confidence 4557774443 2 356899999988886643333332 223 34555544444444443 2222222 467
Q ss_pred HHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh-----hCCCeEEEeeccCCCCcccCHHHHHHhhc-CCceEEEEeCC
Q 014603 119 CTQAIEVILTVLARPGANILLPRPGFPYYEARAT-----HSHLEVRHFDLLPAKGWEVDLDAVEALAD-ENTVALVIINP 192 (422)
Q Consensus 119 ~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~i~i~~p 192 (422)
|+.|+.+++.++++|||+|+..+..+.+...... -...+.+.+++++ ...+|.+++++... .+++++++...
T Consensus 97 Gs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~--~~~IDyd~l~~~a~~~kPklIi~G~S 174 (416)
T d1dfoa_ 97 GSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA--TGHIDYADLEKQAKEHKPKMIIGGFS 174 (416)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS--SSSBCHHHHHHHHHHHCCSEEEEECS
T ss_pred CccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC--ccCccHHHHHHHHHHhccceEEeccc
Confidence 8889999999999999999999888865432211 1234666677654 34599999988764 47777776544
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDH-LAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSD 271 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~ 271 (422)
..|- . -+++++.++|++.|.++++|.+|.. +.-+|..+.++.. . | ++.+|++|+| +|.|.|.+++++
T Consensus 175 ~y~r--~---~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-a-D---vvt~tThKtl--rGPrggiI~~~~ 242 (416)
T d1dfoa_ 175 AYSG--V---VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-A-H---VVTTTTHKTL--AGPRGGLILAKG 242 (416)
T ss_dssp SCCS--C---CCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-S-S---EEEEESSSTT--CCCSCEEEEESS
T ss_pred cccc--c---cCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-c-c---eeeeehhhcc--cCCCceEEEecc
Confidence 4432 2 2478889999999999999999863 3334444444432 2 2 8889999995 677889999864
Q ss_pred CCCcccchhHHHHHHhhhhh--ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCce
Q 014603 272 PNGILQDSGIVDSIKSFLNI--SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSM 349 (422)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 349 (422)
.. +++.+++...... .+++.....++...++.+.....++...+++.++.+.|.+.|.+. |+.++.......
T Consensus 243 ~~-----~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnH 316 (416)
T d1dfoa_ 243 GS-----EELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNH 316 (416)
T ss_dssp CC-----HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred ch-----HhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCc
Confidence 32 4566667655432 345544555555556665444566888899999999999999998 787554444456
Q ss_pred EEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCC------CCCCeEEEEec------cChHHHHHHHHHHHHHHHH
Q 014603 350 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV------GLKDWLRITFA------VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~------~~~~~iRis~~------~~~~~l~~~~~~l~~~~~~ 417 (422)
.+++.+.... -....+...|++.||.+.--.-+ ...+.+||+.. ..++|+.++.+.|.++++.
T Consensus 317 lvlvdl~~~~-----~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 317 LFLVDLVDKN-----LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp EEEEECGGGT-----CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred eeEEEecccC-----CCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 6777775321 13345566778889988632221 12568999985 4678999999999988864
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.80 E-value=1.9e-18 Score=163.55 Aligned_cols=277 Identities=12% Similarity=0.118 Sum_probs=179.5
Q ss_pred CCEEEecCHHHHHHHHHHHhc--CCCCEEEecCCCccchHHHHhhCCCeEEEeeccC-CCCcccCHHHHHHhhcC-----
Q 014603 111 DDVYLTLGCTQAIEVILTVLA--RPGANILLPRPGFPYYEARATHSHLEVRHFDLLP-AKGWEVDLDAVEALADE----- 182 (422)
Q Consensus 111 ~~i~~~~g~~~a~~~~~~~l~--~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~~~----- 182 (422)
...++..|+++++.+++.+.. .+++.|+++...|+++...+...|.+++.++..+ .+.+.+|+++|++.+++
T Consensus 131 ~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~ 210 (434)
T d2z67a1 131 HAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELG 210 (434)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTT
T ss_pred ceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcC
Confidence 344555666677777766653 3679999999999999999999999988776433 34467899999998853
Q ss_pred CceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCCCccccCCCCCeEEEecCccccCCCC
Q 014603 183 NTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLA-FGNTPFVPMGVFGSIVPVLTLGSISKRWIVPG 261 (422)
Q Consensus 183 ~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G 261 (422)
++.+++++.|++++|.+ +++++|+++|+++|+++++|++|+... +.+.........+.+ +++.|++|.++.+
T Consensus 211 ~~~~v~~~~~~~~~g~~---~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D---~~~~s~hK~l~~~- 283 (434)
T d2z67a1 211 NRPCVLSTLTFFPPRNS---DDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVD---AVVSSSDKNLLTP- 283 (434)
T ss_dssp CCEEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCS---EEEEEHHHHHCCC-
T ss_pred CceEEEeccCcCCCccc---cCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcc---eEEEcCccccccC-
Confidence 57778888999999998 668999999999999999999997522 111111112223333 7888999986543
Q ss_pred ceeEEEEeeCCCCcccchhHHHHHHhhhhhc-cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---C
Q 014603 262 WRLGWLVTSDPNGILQDSGIVDSIKSFLNIS-SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI---P 337 (422)
Q Consensus 262 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 337 (422)
...|++..++ +.+++++....... ...+.....+....+ ....+.+..++..++++++.+.|+++ .
T Consensus 284 ~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~---~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~ 353 (434)
T d2z67a1 284 IGGGLVYSTD-------AEFIKEISLSYPGRASATPVVNTLVSLLSM---GSKNYLELVKNQKNSKKLLDELLNDLSKKT 353 (434)
T ss_dssp SSCEEEEESC-------HHHHHHHHTTSCSCBCSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccccccCc-------HHHHHHHHhhcccccccchHHHHHHHHHHH---HHhcchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 2356666654 45666665544322 122222223332222 24556667777777777777777664 2
Q ss_pred CCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecC-----------CCCCCCCeEEEEec--cChHHH
Q 014603 338 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPG-----------ITVGLKDWLRITFA--VEPSAL 404 (422)
Q Consensus 338 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g-----------~~~~~~~~iRis~~--~~~~~l 404 (422)
+..+. .+.....+.+.++. +..++...| .+.||....+ ..+...+++|++++ ++++||
T Consensus 354 g~~ll-~~~~~~~~~~~~~~-------~~~~l~~~L-~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edI 424 (434)
T d2z67a1 354 GGKFL-DVESPIASCISVNS-------DPVEIAAKL-YNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDI 424 (434)
T ss_dssp SCCBC-CCCCSSEEEEECSS-------CHHHHHHHH-HHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHH
T ss_pred Cceec-CCCCCceeeeecCC-------CHHHHHHHH-HHcCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHH
Confidence 44423 22223333334432 466666665 5568853211 11233678999987 789999
Q ss_pred HHHHHHHHH
Q 014603 405 EDGLGRMKA 413 (422)
Q Consensus 405 ~~~~~~l~~ 413 (422)
+.++++|++
T Consensus 425 D~~i~~L~k 433 (434)
T d2z67a1 425 VNSVSKLEK 433 (434)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.80 E-value=9.5e-18 Score=150.72 Aligned_cols=336 Identities=13% Similarity=0.075 Sum_probs=222.0
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCCC------CCCCHHHHHHHHHHHhhcCCCCCCCCCEE-Eec
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYSS------TVGILPARRAIADYLNRDLPYKLSPDDVY-LTL 117 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~l~~~~~~~~~~~~i~-~~~ 117 (422)
.+.|+|--.. | ..+|.+++++...+.+...-+|+. ...+.++++...+...+.++ .+.+- =..
T Consensus 23 ~~~l~LiaSE-----N-~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~----a~~anVqp~ 92 (405)
T d1kl1a_ 23 HAKIELIASE-----N-FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG----AEHANVQPH 92 (405)
T ss_dssp HHSEECCTTC-----C-CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC----CSEEECCCS
T ss_pred HcCceEeccC-----C-cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC----CCcceeecc
Confidence 4567774443 2 346899999988886543333332 22344555555455544443 22232 235
Q ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCccchHH-----HHhhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceEEEEeC
Q 014603 118 GCTQAIEVILTVLARPGANILLPRPGFPYYEA-----RATHSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVALVIIN 191 (422)
Q Consensus 118 g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~ 191 (422)
||+.|+.+++.++++|||+|+..++.+.+... ...-...+.+.+++++ +++.+|.+++++.... +++++++..
T Consensus 93 SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~~~ID~d~l~~~a~~~kPklIi~G~ 171 (405)
T d1kl1a_ 93 SGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIVAAA 171 (405)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred CchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccch-hcccccHHHHHHHHHhhCcceEEecc
Confidence 77889999999999999999998876654322 1112235777788875 4567999999997654 667666544
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEee
Q 014603 192 PGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTS 270 (422)
Q Consensus 192 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~ 270 (422)
..+|--. +++++.++|++.|.++++|.+|. ++...|..+.++.. .| ++.+|.+|+| +|.|.|.++++
T Consensus 172 S~y~r~~-----d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~--aD---vvt~tThKtl--rGPrgg~I~~~ 239 (405)
T d1kl1a_ 172 SAYPRII-----DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY--AH---FVTTTTHKTL--RGPRGGMILCQ 239 (405)
T ss_dssp SSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT--CS---EEEEESSSTT--CCCSCEEEEEC
T ss_pred ccccccc-----ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh--hh---heeccccccc--cCCCCceEEec
Confidence 4444322 47889999999999999999985 44445544555432 22 7788999995 67788988885
Q ss_pred CCCCcccchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 014603 271 DPNGILQDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGS 348 (422)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 348 (422)
.++.+++..... ..+++.....++...++.+.....++...+++.++++.|.+.|.+. |+.++..-...
T Consensus 240 --------~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~ 310 (405)
T d1kl1a_ 240 --------EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDN 310 (405)
T ss_dssp --------HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSS
T ss_pred --------chhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCcc
Confidence 356676666553 2345544555555556655334566788889999999999999987 77755333445
Q ss_pred eEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe----cCCC--CCCCCeEEEEec------cChHHHHHHHHHHHHHHH
Q 014603 349 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGIT--VGLKDWLRITFA------VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~--~~~~~~iRis~~------~~~~~l~~~~~~l~~~~~ 416 (422)
..+++.+.... .....++.+|++.||.+. |+.. ....+.+||+.. ..++++.++.+.|.++++
T Consensus 311 H~vlvdl~~~~-----~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 311 HLLLVDLRPQQ-----LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp SEEEEECGGGT-----CCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred ceeeccccccC-----CcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 67777775422 133445666788899887 3321 112468999985 467899999999998885
Q ss_pred H
Q 014603 417 R 417 (422)
Q Consensus 417 ~ 417 (422)
.
T Consensus 386 ~ 386 (405)
T d1kl1a_ 386 N 386 (405)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3.7e-17 Score=149.29 Aligned_cols=286 Identities=19% Similarity=0.173 Sum_probs=189.6
Q ss_pred CCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHh----hCC
Q 014603 82 CYSST--VGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGANILLPRPGFPYYEARAT----HSH 155 (422)
Q Consensus 82 ~y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~----~~g 155 (422)
.|+.. +....|+++++++- ..+..+++++|++|+..++ .++.+||.|++....|.+....+. ..|
T Consensus 48 ~YsR~gnPT~~~lE~~la~LE--------~~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~g 118 (393)
T d1n8pa_ 48 EYSRSQNPNRENLERAVAALE--------NAQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp CBTTTCCHHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred eeeCCCChHHHHHHHHHHHHh--------CCceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhccc
Confidence 45542 23456666676664 3456788888899997665 566889999999999987655444 345
Q ss_pred CeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHH----HcCcEEEEcccccccccC
Q 014603 156 LEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAK----KLGIMVIADEVYDHLAFG 231 (422)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~----~~~~~li~D~~~~~~~~~ 231 (422)
+++..+. .+.+++++.++++++++++..|.||+..+. |+++|+++|+ ++|+++|+|..+.....
T Consensus 119 i~~~~~~--------~~~~~~~~~i~~~t~lv~~EspsNP~l~v~---Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~- 186 (393)
T d1n8pa_ 119 VETSFTN--------DLLNDLPQLIKENTKLVWIETPTNPTLKVT---DIQKVADLIKKHAAGQDVILVVDNTFLSPYI- 186 (393)
T ss_dssp SCCEEES--------SHHHHHHHHSCSSEEEEEECSSCTTTCCCC---CHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-
T ss_pred ceeEEee--------cchHHHHHHhhhhcceeEecCcchhhhhcc---chhhhhhhhhhhcccCCceEEEecCccCccc-
Confidence 5554442 245789999999999999999999999995 5777777777 67899999999864221
Q ss_pred CCCCCCccccCCCCCeEEEecCccccCCCC-ceeEEEEeeCCCCcccchhHHHHHHhhhh-hccCcchHHHHHHHHHHhh
Q 014603 232 NTPFVPMGVFGSIVPVLTLGSISKRWIVPG-WRLGWLVTSDPNGILQDSGIVDSIKSFLN-ISSDPATFIQGAVPQILEK 309 (422)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~ 309 (422)
..+ ..++.| +++.|.+|.+++.| .-.|.++.++ +++.++++.... .....++...+.+..-|+.
T Consensus 187 ---~~P-l~~GAD---iVvhS~TKyi~GhsDv~~G~v~~~~-------~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T 252 (393)
T d1n8pa_ 187 ---SNP-LNFGAD---IVVHSATKYINGHSDVVLGVLATNN-------KPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT 252 (393)
T ss_dssp ---CCG-GGGTCS---EEEEETTTTTTCSSCCCCEEEEESC-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred ---CCc-hhhCCC---EEEEccccccCCCCccccceeeecc-------hhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc
Confidence 112 234444 99999999987644 5566666543 456677766554 3446788888888888876
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCC------------------CCceEEEEecCcccccCCCCHHHHH
Q 014603 310 TEEEFFSKITDILRETADICCDRLKEI-PCITCPKKP------------------EGSMFVMVKLNYSLLEGINSDMEFA 370 (422)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~------------------~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (422)
+.-+.++..++...+.+.|+.. |.+..+.+| .+|..+.+.++.. .+..
T Consensus 253 -----l~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~--------~~~~ 319 (393)
T d1n8pa_ 253 -----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG--------AEAA 319 (393)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC--------HHHH
T ss_pred -----hhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCC--------HHHH
Confidence 6777788888889999999754 443322222 1244555666431 2222
Q ss_pred HHHHHhcCeEE-ec--CCCC----------------------CC-CCeEEEEeccChHHHHHHHHHHHHHHHH
Q 014603 371 LKLAKEESVIV-LP--GITV----------------------GL-KDWLRITFAVEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 371 ~~l~~~~gi~v-~~--g~~~----------------------~~-~~~iRis~~~~~~~l~~~~~~l~~~~~~ 417 (422)
.++++.-.+.- .+ |... +. ++.||||++. |+++.+++.|++++++
T Consensus 320 ~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGl--E~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 320 SKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI--EDTDDLLEDIKQALKQ 390 (393)
T ss_dssp HHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHH
Confidence 33333333321 11 1110 00 3689999997 5677777777777765
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.79 E-value=2.7e-17 Score=155.68 Aligned_cols=335 Identities=9% Similarity=0.024 Sum_probs=214.7
Q ss_pred cHHHHHHH-HHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCC-------CCCCEEEecCHHHHHHHHHHHhcC---
Q 014603 64 ASVAVDAI-VHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKL-------SPDDVYLTLGCTQAIEVILTVLAR--- 132 (422)
Q Consensus 64 ~~~v~~a~-~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~-------~~~~i~~~~g~~~a~~~~~~~l~~--- 132 (422)
++.+...+ ...++. ....|...+...+++..+.+|+.+.+|.+. ....-++|+||++++..++.+...
T Consensus 86 ~~~~l~~~~~~~~n~-n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~ 164 (476)
T d1js3a_ 86 YPAMLADMLCGAIGC-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVV 164 (476)
T ss_dssp HHHHHHHHHHHHHCC-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHH
Confidence 44444434 444433 233444444567889999999998877642 223568999999998888754321
Q ss_pred -------CC---------CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCC------ceEEEEe
Q 014603 133 -------PG---------ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADEN------TVALVII 190 (422)
Q Consensus 133 -------~g---------d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~ 190 (422)
.| -.|++++.+|+++...+...|.+++.++.+ +++.+|++.|++.+++. +.+++.+
T Consensus 165 ~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~Vvat 242 (476)
T d1js3a_ 165 RRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVAT 242 (476)
T ss_dssp HHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeec
Confidence 11 157888999999999999999999888875 45679999999988542 3455666
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccC-CCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEe
Q 014603 191 NPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFG-NTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVT 269 (422)
Q Consensus 191 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~ 269 (422)
.+++.+|.+ +++++|+++|++||+++++|.+|+++..- ......+..+...+ -+..+++|+++.| ..+|+++.
T Consensus 243 aGtt~~G~i---Dpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aD--Sit~d~HK~l~~P-~~~g~~l~ 316 (476)
T d1js3a_ 243 LGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD--SFNFNPHKWLLVN-FDCSAMWV 316 (476)
T ss_dssp BSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCS--EEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCccceee---ccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccc--eeeecCccccccC-Ccceeecc
Confidence 779999999 78999999999999999999999875432 22111222222111 5566899996554 45788888
Q ss_pred eCCCCcccchhHHHHH-------Hhh----------hhhcc-CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014603 270 SDPNGILQDSGIVDSI-------KSF----------LNISS-DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCD 331 (422)
Q Consensus 270 ~~~~~~~~~~~~~~~~-------~~~----------~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 331 (422)
+++. .+...+ ... ...+. +.-......+-..+.......+.+..++..+.++++.+
T Consensus 317 r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~ 390 (476)
T d1js3a_ 317 KRRT------DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (476)
T ss_dssp SCHH------HHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchH------HHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 6521 111111 000 00000 00111112222234434467888899999999999999
Q ss_pred HhhcCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec---cChHHHHHHH
Q 014603 332 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA---VEPSALEDGL 408 (422)
Q Consensus 332 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~l~~~~ 408 (422)
.|++.|++++...|.-+ .+.+++.... ....++.+++.++..+.+.+.. .....++|++++ +++++|+.++
T Consensus 391 ~l~~~~~fel~~~p~l~-iV~Fr~~~~d----~~n~~l~~~l~~~G~~~~s~t~-~~g~~~lR~~i~n~~Tt~~did~~~ 464 (476)
T d1js3a_ 391 FVLQDPRFEVCAEVTLG-LVCFRLKGSD----GLNEALLERINSARKIHLVPCR-LRGQFVLRFAICSRKVESGHVRLAW 464 (476)
T ss_dssp HHHHCTTEEECSCCCSS-EEEEEESSCH----HHHHHHHHHHHHHTSCBCEEEE-ETTEEEEEEECCCTTCCHHHHHHHH
T ss_pred HHhcCCCeEEECCCceE-EEEEEccCCh----HHHHHHHHHHHhcCCEEEeeee-ECCEEEEEEEeCCCCCCHHHHHHHH
Confidence 99999999866555544 4445553210 0124566666555445555432 122347999986 6789999999
Q ss_pred HHHHHHHHHhc
Q 014603 409 GRMKAFYDRHA 419 (422)
Q Consensus 409 ~~l~~~~~~~~ 419 (422)
+.|++..+++.
T Consensus 465 ~~i~~~a~~ll 475 (476)
T d1js3a_ 465 EHIRGLAAELL 475 (476)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987753
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.77 E-value=2.4e-17 Score=157.10 Aligned_cols=320 Identities=13% Similarity=0.032 Sum_probs=180.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe-cCHHHHHHHHHHHhcCCCCEEEecCCCccchHHHHhh-CCCeEEE
Q 014603 83 YSSTVGILPARRAIADYLNRDLPYKLSPDDVYLT-LGCTQAIEVILTVLARPGANILLPRPGFPYYEARATH-SHLEVRH 160 (422)
Q Consensus 83 y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~-~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~-~g~~~~~ 160 (422)
+.+...+.++++.+|++++ .++.+|+ +|+++++.+++.+++++||+|+++..+|.+....+.. .+..++.
T Consensus 62 ~~~~~~i~eae~~~A~~~g--------a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~ 133 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVYN--------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVY 133 (462)
T ss_dssp TTTBTHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred cCCCHHHHHHHHHHHHHhC--------CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCcee
Confidence 3444457899999999983 3456555 5556677777889999999999999999887665544 3444443
Q ss_pred ee--ccCCCC------cccCHHHH---------HHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcc
Q 014603 161 FD--LLPAKG------WEVDLDAV---------EALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADE 223 (422)
Q Consensus 161 ~~--~~~~~~------~~~d~~~l---------~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~ 223 (422)
.. .++... ..++.+.+ +.....+++.++++..+|-.|.+. ++++|+++|+++|+++++|+
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~---dl~~I~~ia~~~g~~l~vD~ 210 (462)
T d1c4ka2 134 LQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIY---NAHEVVKRIGHLCDYIEFDS 210 (462)
T ss_dssp ECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEE---CHHHHHHHHGGGBSEEEEEC
T ss_pred eecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchh---hHHHHHHHHHHcCCEEEEec
Confidence 32 222111 11232222 233344566666666667789984 58888999999999999999
Q ss_pred ccccccc-CCCCCCCccccCC----C-CCeEEEecCccccCCCCceeEEEEeeCCCCcccchh--HHHHHHhhh--hhcc
Q 014603 224 VYDHLAF-GNTPFVPMGVFGS----I-VPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSG--IVDSIKSFL--NISS 293 (422)
Q Consensus 224 ~~~~~~~-~~~~~~~~~~~~~----~-~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~ 293 (422)
+++.... .+.........+. + ...+++.|++|+++.++ .|.++..+...+..... -.+.+.... ..+.
T Consensus 211 A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 288 (462)
T d1c4ka2 211 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMST 288 (462)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCS
T ss_pred hhhccccccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccC
Confidence 9975332 1111111111111 1 12488999999976654 34444432211100000 012222222 1234
Q ss_pred CcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC---------------------------C-
Q 014603 294 DPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKK---------------------------P- 345 (422)
Q Consensus 294 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---------------------------~- 345 (422)
+++......+..+.........++..++..++.+.++++++++++...... |
T Consensus 289 sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (462)
T d1c4ka2 289 SPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKG 368 (462)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTT
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCc
Confidence 555555555555444333344555666667777777777766533210000 0
Q ss_pred ---------CCceE------EEEecCccc-----cc-CCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChH
Q 014603 346 ---------EGSMF------VMVKLNYSL-----LE-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPS 402 (422)
Q Consensus 346 ---------~~g~~------~~~~~~~~~-----~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~ 402 (422)
....+ +.+..+.-. .. ......++.. .++++||.+... ..+.+|++++ ++++
T Consensus 369 ~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~-~L~~~gI~~e~~----~~~~i~~~~s~~~T~e 443 (462)
T d1c4ka2 369 AKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVAN-YLRDHGIIPEKS----DLNSILFLMTPAETPA 443 (462)
T ss_dssp CTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHH-HHHHTTCCCSEE----CSSEEEEECCTTCCHH
T ss_pred chhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHH-HHHHcCCeeecc----CCCeEEEEecCCCCHH
Confidence 00001 122222110 00 0113445544 457789865432 2467999997 7899
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 014603 403 ALEDGLGRMKAFYDRHAK 420 (422)
Q Consensus 403 ~l~~~~~~l~~~~~~~~~ 420 (422)
+++++++.|+++-+.+.+
T Consensus 444 did~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 444 KMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999998877654
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.77 E-value=1.2e-16 Score=147.65 Aligned_cols=310 Identities=13% Similarity=0.109 Sum_probs=204.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCC--CEEEecC
Q 014603 65 SVAVDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPG--ANILLPR 141 (422)
Q Consensus 65 ~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~g--d~Vl~~~ 141 (422)
++-.+++.+.+..+.. ...+...++++.++++++ .+.+++++|||.|+.+++.++. ++| |+|+++.
T Consensus 12 ~~~~~~v~~~l~~~~~---~~G~~v~~fE~~~~~~~g--------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~ 80 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQL---TQGKRSLLFEEALCEFLG--------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 80 (371)
T ss_dssp HHHHHHHHHHHTSSCC---SSSHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred HHHHHHHHHHHcCCCc---cCCHHHHHHHHHHHHHHC--------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccc
Confidence 5667888888876533 223347899999999993 4578999999999999999974 344 5899999
Q ss_pred CCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEE
Q 014603 142 PGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIA 221 (422)
Q Consensus 142 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 221 (422)
.+|.+........|+.++.+++++.. ..+.+.+++.+.++++++++++ ..|.. .++.+|.++|+++|+++|+
T Consensus 81 ~t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~~t~avi~vh---~~G~~---~~~~~i~~~~~~~~i~lIE 152 (371)
T d2fnua1 81 ISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVD---YAGKS---VEVESVQKLCKKHSLSFLS 152 (371)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEEC---GGGCC---CCHHHHHHHHHHHTCEEEE
T ss_pred ccccccceeeeccCcccccccccccc--cccchhhhhhccchhhcccccc---ccccc---cccccccccccccchhhcc
Confidence 99999999999999999999987643 3566788888888999998775 45665 3577888999999999999
Q ss_pred ccccccccc-CCCCCCCccccCCCCCeEEEecC--ccccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh-------
Q 014603 222 DEVYDHLAF-GNTPFVPMGVFGSIVPVLTLGSI--SKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI------- 291 (422)
Q Consensus 222 D~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~s~--sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~------- 291 (422)
|.+++.... .+.. ...++ .+.+.|| +|.+.+.+ .|++++++ +++.++++.....
T Consensus 153 Daaqa~Ga~~~~~~---~G~~g----~~~~~Sf~~~K~l~~g~--GG~i~t~~-------~~~~~~~~~~~~~g~~~~~~ 216 (371)
T d2fnua1 153 DSSHALGSEYQNKK---VGGFA----LASVFSFHAIKPITTAE--GGAVVTND-------SELHEKMKLFRSHGMLKKDF 216 (371)
T ss_dssp ECTTCTTCEETTEE---TTSSS----SEEEEECCTTSSSCCSS--CEEEEESC-------HHHHHHHHHHTBTTEEESSS
T ss_pred chhhccCceecccc---CCccc----ccccccccccccccccc--ceEEEeec-------hhhhhhcccccccccccccc
Confidence 999987432 2211 12222 1445555 68864433 58888765 5677777654321
Q ss_pred ----------ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----CCceEEEEecCc
Q 014603 292 ----------SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP----EGSMFVMVKLNY 357 (422)
Q Consensus 292 ----------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~g~~~~~~~~~ 357 (422)
....+.+..+.+..-|+. +++..++-+++.+.+.+.|++.+++.....+ .....+.+.++.
T Consensus 217 ~~~~~~~~G~n~r~sel~Aaigl~qL~~-----l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 291 (371)
T d2fnua1 217 FEGEVKSIGHNFRLNEIQSALGLSQLKK-----APFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQ 291 (371)
T ss_dssp SCEEESSCCCBCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECG
T ss_pred cccccccccccccccchhhhhhhhhhhh-----ccchhhhhhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 112333444444444543 5555666667777778888887665422111 111122223332
Q ss_pred ccccCCCCHHHHHHHHHHhcCeEEecCCCC-----------CC----------CCeEEEEec--cChHHHHHHHHHHHHH
Q 014603 358 SLLEGINSDMEFALKLAKEESVIVLPGITV-----------GL----------KDWLRITFA--VEPSALEDGLGRMKAF 414 (422)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~-----------~~----------~~~iRis~~--~~~~~l~~~~~~l~~~ 414 (422)
... ....++... ++++||.+.+...+ .. ...+.+-+. .+++++++.++.|.++
T Consensus 292 ~~~---~~r~~~~~~-L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~ 367 (371)
T d2fnua1 292 KFF---TCKKLILES-LHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKT 367 (371)
T ss_dssp GGG---GGHHHHHHH-HHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred cch---hHHHHHHHH-HHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHH
Confidence 110 012345454 46779988765321 00 133444333 5889999999999999
Q ss_pred HHHh
Q 014603 415 YDRH 418 (422)
Q Consensus 415 ~~~~ 418 (422)
++++
T Consensus 368 ~~~~ 371 (371)
T d2fnua1 368 FESF 371 (371)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 8764
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.76 E-value=1.2e-16 Score=147.98 Aligned_cols=307 Identities=13% Similarity=0.066 Sum_probs=193.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHh-cCCCCEEEecCCCccc
Q 014603 68 VDAIVHSVRSARFNCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVL-ARPGANILLPRPGFPY 146 (422)
Q Consensus 68 ~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~ 146 (422)
++++.+.++.+.....++ ...++++.+++++ ..+.++++++||.|+.++++++ +++||+|+++..+|..
T Consensus 4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~--------~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a 73 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYS--------KSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIA 73 (374)
T ss_dssp HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHH--------CCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG
T ss_pred HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHh
Confidence 356667776654433444 3789999999999 3457999999999999999998 7899999999999999
Q ss_pred hHHHHhhCCCeEEEeeccCCCCcccCHHH--HHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccc
Q 014603 147 YEARATHSHLEVRHFDLLPAKGWEVDLDA--VEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEV 224 (422)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~--l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~ 224 (422)
....+...|+.++.+.+++.. ...+.+. +.....++++++++++. .|.. .++.+|.++|+++|++||+|.+
T Consensus 74 ~~~~~~~~g~~pv~~Di~~~~-~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~---~d~~~i~~~~~~~~i~vIED~a 146 (374)
T d1o69a_ 74 SVAPICYLKAKPVFIDCDETY-NIDVDLLKLAIKECEKKPKALILTHL---YGNA---AKMDEIVEICKENDIVLIEDAA 146 (374)
T ss_dssp GTHHHHHTTCEEEEECBCTTS-SBCHHHHHHHHHHCSSCCCEEEEECG---GGCC---CCHHHHHHHHHHTTCEEEEECT
T ss_pred hHHHHhhccceeEeccccccc-ccccccccccchhccccccccccccc---ccch---hhhHHHHHHhhccCcchhhhhh
Confidence 999999999999999887432 2233333 33456678888887765 3444 4688899999999999999999
Q ss_pred cccccc-CCCCCCCccccCCCCCeEEEecCc--cccCCCCceeEEEEeeCCCCcccchhHHHHHHhhhhh----------
Q 014603 225 YDHLAF-GNTPFVPMGVFGSIVPVLTLGSIS--KRWIVPGWRLGWLVTSDPNGILQDSGIVDSIKSFLNI---------- 291 (422)
Q Consensus 225 ~~~~~~-~~~~~~~~~~~~~~~~~i~i~s~s--K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 291 (422)
++.... .|. .+..++ .+.+.||+ |.+...| .|.+++.+ +++.++++.....
T Consensus 147 ~a~g~~~~~~---~~G~~g----d~~~fSf~~~K~l~tge--GG~i~tnn-------~~~~~~~~~~~~~g~~~~~~~~~ 210 (374)
T d1o69a_ 147 EALGSFYKNK---ALGTFG----EFGVYSYNGNKIITTSG--GGMLIGKN-------KEKIEKARFYSTQARENCLHYEH 210 (374)
T ss_dssp TCTTCEETTE---ETTSSS----SEEEEECCTTSSSCCSS--CEEEEESC-------HHHHHHHHHHTBTCCCSSSSCCC
T ss_pred hhhcceECCe---ecCCCC----ceEEEeccCcccccccc--ceeehhhh-------HHHHHhhcccccccccccccccc
Confidence 986432 222 122232 26666775 7765444 47777765 5677777654321
Q ss_pred -----ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC----c--eEEEEecCcccc
Q 014603 292 -----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEG----S--MFVMVKLNYSLL 360 (422)
Q Consensus 292 -----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----g--~~~~~~~~~~~~ 360 (422)
....+.+..+.+..-|+. +.+..++-++..+.+.+.|.+...+. . .+.. . .+..+..+....
T Consensus 211 ~~~G~N~rm~ei~Aaig~~qL~~-----l~~~i~~r~~i~~~y~~~L~~~~~~~-~-~~~~~~s~~~~~~~~~~~~~~~~ 283 (374)
T d1o69a_ 211 LDYGYNYRLSNVLGAIGVAQMEV-----LEQRVLKKREIYEWYKEFLGEYFSFL-D-ELENSRSNRWLSTALINFDKNEL 283 (374)
T ss_dssp SSCCCBCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTTEECC-C-CCTTEECCCSSEEEEESCCGGGS
T ss_pred ccCCccccccchhhhhhHHHHhh-----hhhhcchhHHHHHHHHhhcccccccc-c-cccCCCCChhheeeeeccccccc
Confidence 112343444444444543 44555555666777777777653221 1 1111 1 122221111000
Q ss_pred --------------cCCCCHHHHHHHHHHhcCeEEecCCCCC-------C-------------CCeEEEEec--cChHHH
Q 014603 361 --------------EGINSDMEFALKLAKEESVIVLPGITVG-------L-------------KDWLRITFA--VEPSAL 404 (422)
Q Consensus 361 --------------~~~~~~~~~~~~l~~~~gi~v~~g~~~~-------~-------------~~~iRis~~--~~~~~l 404 (422)
.......++.. .++++||.+++....- . ...+.+-+. .+++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~r~~l~~-~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di 362 (374)
T d1o69a_ 284 NACQKDINISQKNITLHPKISKLIE-DLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDV 362 (374)
T ss_dssp CCCCEEEECCCCCCCCCHHHHHHHH-HHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHH
T ss_pred cccccccccchhhccchhhHHHHHH-HHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHH
Confidence 00001233444 4577899887653210 0 123444333 588999
Q ss_pred HHHHHHHHHHH
Q 014603 405 EDGLGRMKAFY 415 (422)
Q Consensus 405 ~~~~~~l~~~~ 415 (422)
++.++.|.+++
T Consensus 363 ~~I~~~I~~~l 373 (374)
T d1o69a_ 363 YEISKLILKSI 373 (374)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.75 E-value=4.6e-16 Score=142.59 Aligned_cols=347 Identities=13% Similarity=0.043 Sum_probs=226.2
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHHHHHHHHHhhcCCCCCCCCCEEE-ec
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPARRAIADYLNRDLPYKLSPDDVYL-TL 117 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-~~ 117 (422)
...|+|--.. | -.++.+++++...+.+...-+|+ -...+.+++....+...+.++...+...+-+ ..
T Consensus 31 ~~~l~LIaSE-----N-~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~ 104 (470)
T d1rv3a_ 31 RVGLELIASE-----N-FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY 104 (470)
T ss_dssp HSSEECCTTC-----C-CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS
T ss_pred HcCceEecCC-----C-cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhcccccccc
Confidence 5557775443 2 35689999998888664332332 2334566666666666665543222223322 46
Q ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCccchHHHH----------hhCCCeEEEeeccCCCCcccCHHHHHHhhcC-CceE
Q 014603 118 GCTQAIEVILTVLARPGANILLPRPGFPYYEARA----------THSHLEVRHFDLLPAKGWEVDLDAVEALADE-NTVA 186 (422)
Q Consensus 118 g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~ 186 (422)
||+.|+.+++.++++|||+|+..+....+..... .-...+...++++++ .+.+|.+++++.... ++++
T Consensus 105 SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~kPkl 183 (470)
T d1rv3a_ 105 SGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLFHPKL 183 (470)
T ss_dssp SHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCSE
T ss_pred CCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-cCcccHHHHHHHHHhhCcce
Confidence 7889999999999999999999876664432211 111246777888764 457999999987654 6777
Q ss_pred EEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeE
Q 014603 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLG 265 (422)
Q Consensus 187 i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G 265 (422)
+++-...+|-=. +++++.++|++.|.+|++|.+|. ++.-+|..+.++.. . | ++.+|.+|+| +|.|.|
T Consensus 184 Ii~G~S~y~r~~-----d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-a-D---vvt~tTHKtl--rGPrgG 251 (470)
T d1rv3a_ 184 IIAGTSCYSRNL-----DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-C-H---VVTTTTHKTL--RGCRAG 251 (470)
T ss_dssp EEECCSSCCSCC-----CHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-C-S---EEEEESSGGG--CCCSCE
T ss_pred EeechhhccccC-----CHHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-e-e---eeeeehhhhc--cCCcce
Confidence 765544444322 47888999999999999999986 34444554555532 2 2 8889999995 778889
Q ss_pred EEEeeCCCCcc-------cchhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014603 266 WLVTSDPNGIL-------QDSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEI 336 (422)
Q Consensus 266 ~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (422)
.+++++...-. -..++.+++..... ..+++.....++.+.++.+.....+.+..+++.++.+.|.+.|.+.
T Consensus 252 iI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~ 331 (470)
T d1rv3a_ 252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL 331 (470)
T ss_dssp EEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99886421000 00146666666553 2345555555555556665444456888889999999999999998
Q ss_pred CCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEe----cCCCC-CCCCeEEEEec------cChHHHH
Q 014603 337 PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL----PGITV-GLKDWLRITFA------VEPSALE 405 (422)
Q Consensus 337 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----~g~~~-~~~~~iRis~~------~~~~~l~ 405 (422)
|+.++........+++.+.... . + ...++..|++.||.+. |+... ...+.+||+.. ..++++.
T Consensus 332 -G~~v~~ggTdnHlvlvdl~~~g---~-~-g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~ 405 (470)
T d1rv3a_ 332 -GYKIVTGGSDNHLILVDLRSKG---T-D-GGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQ 405 (470)
T ss_dssp -TCEEGGGSCSSSEEEEEGGGGT---C-C-HHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHH
T ss_pred -CceeccCCCCCceEEEeecccC---C-c-HHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHH
Confidence 7775544455567777774321 1 3 3445667788899876 44321 12567999985 4678999
Q ss_pred HHHHHHHHHHH
Q 014603 406 DGLGRMKAFYD 416 (422)
Q Consensus 406 ~~~~~l~~~~~ 416 (422)
++.+.|.++++
T Consensus 406 ~iA~~I~~~l~ 416 (470)
T d1rv3a_ 406 KVAHFIHRGIE 416 (470)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.74 E-value=5.7e-16 Score=141.49 Aligned_cols=345 Identities=14% Similarity=0.061 Sum_probs=210.8
Q ss_pred CCceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCCC------CCCCCHHHHHHHHHHHhhcCCCCCCCCC--E-EE
Q 014603 45 RPLIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCYS------STVGILPARRAIADYLNRDLPYKLSPDD--V-YL 115 (422)
Q Consensus 45 ~~~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~ia~~l~~~~~~~~~~~~--i-~~ 115 (422)
...|+|--.. + ..++.+++++...+.+.....|+ -...+.+++....+...+.++ .+... | +=
T Consensus 27 ~~~l~LiaSE-----N-~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--~~~a~w~vNVq 98 (463)
T d2a7va1 27 CRGLELIASE-----N-FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQ 98 (463)
T ss_dssp HHSEECCTTC-----C-CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTT--CCTTTEEEECC
T ss_pred hcCeeEeccC-----C-cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCchhccCCcc
Confidence 4447774443 2 35689999998887654333333 234466777666666655554 23321 1 22
Q ss_pred ecCHHHHHHHHHHHhcCCCCEEEecCCCccchHHH--------HhhCC--CeEEEeeccCCCCcccCHHHHHHhhcC-Cc
Q 014603 116 TLGCTQAIEVILTVLARPGANILLPRPGFPYYEAR--------ATHSH--LEVRHFDLLPAKGWEVDLDAVEALADE-NT 184 (422)
Q Consensus 116 ~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~--------~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~ 184 (422)
..|++.|+.+++.++++|||+|+..++.+.+.... ....+ .+...+.+++ .+..+|.+++++.... ++
T Consensus 99 p~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~-~~~~IDyd~~~~~a~~~kP 177 (463)
T d2a7va1 99 PYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRP 177 (463)
T ss_dssp CSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCC
T ss_pred ccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC-CCCcCcHHHHHHHHhhcCC
Confidence 35678899999999999999999988776544211 11122 2344455554 3456899999987654 67
Q ss_pred eEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCCCccccCCCCCeEEEecCccccCCCCce
Q 014603 185 VALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYD-HLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWR 263 (422)
Q Consensus 185 ~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r 263 (422)
+++++-....|--. +++++.++|++.|.++++|.+|. ++.-+|..+.++.. . | ++.+|.+|+| +|.|
T Consensus 178 klIi~G~S~y~r~~-----d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-a-D---vvt~tTHKTl--rGPr 245 (463)
T d2a7va1 178 RLIIAGTSAYARLI-----DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-A-D---IVTTTTHKTL--RGAR 245 (463)
T ss_dssp SEEEECCSSCCSCC-----CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-C-S---EEEEESSGGG--CSCS
T ss_pred ceEEeccccccccc-----CHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-h-h---hhhchhhhhh--cCCC
Confidence 77765554444332 47888999999999999999985 44444544545432 2 2 8888999995 7888
Q ss_pred eEEEEeeCCCCccc-------chhHHHHHHhhhh--hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 014603 264 LGWLVTSDPNGILQ-------DSGIVDSIKSFLN--ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLK 334 (422)
Q Consensus 264 ~G~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 334 (422)
.|.+++++...-.. ..++.+++..... ..+++.....++.+.++.+.....+++..+++.++.+.|.+.|.
T Consensus 246 gGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~ 325 (463)
T d2a7va1 246 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL 325 (463)
T ss_dssp CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 89998864210000 0145666665543 33455555555555566554445678888899999999999999
Q ss_pred cCCCCCCCCCCCCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEec----CCCCC-CCCeEEEEec------cChHH
Q 014603 335 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP----GITVG-LKDWLRITFA------VEPSA 403 (422)
Q Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~----g~~~~-~~~~iRis~~------~~~~~ 403 (422)
+. |+.++........+++.+.... -....++..|++.||.+.- +.... ..+.|||... ..++|
T Consensus 326 ~~-G~~vv~ggTdnHlvlvdl~~~~-----~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~d 399 (463)
T d2a7va1 326 ER-GYSLVSGGTDNHLVLVDLRPKG-----LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDD 399 (463)
T ss_dssp HT-TCEEGGGSCSSSEEEEECTTTT-----CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHH
T ss_pred hC-CCeeecCCCCCceeeeeccccC-----CCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHH
Confidence 88 7775544455567777774321 1344556667888998873 33211 2567999985 35789
Q ss_pred HHHHHHHHHHHHH
Q 014603 404 LEDGLGRMKAFYD 416 (422)
Q Consensus 404 l~~~~~~l~~~~~ 416 (422)
+.++.+.|.+++.
T Consensus 400 m~~iA~~I~~~l~ 412 (463)
T d2a7va1 400 FRRVVDFIDEGVN 412 (463)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888774
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.7e-17 Score=158.36 Aligned_cols=313 Identities=15% Similarity=0.084 Sum_probs=183.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhcCCCCE---------EEecCCCccchHHHH
Q 014603 81 NCYSSTVGILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLARPGAN---------ILLPRPGFPYYEARA 151 (422)
Q Consensus 81 ~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~---------Vl~~~~~~~~~~~~~ 151 (422)
..|+..+...+|++++++++ ..+.++++++|++|+.+++.+++++|+. +......|......+
T Consensus 68 ~~Y~~~~~~~~le~~~a~l~--------G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (467)
T d2v1pa1 68 EAFSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHS 139 (467)
T ss_dssp CCSSSCHHHHHHHHHHHHHT--------CCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHH
T ss_pred hhhcCCchHHHHHHHHHHHH--------CCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHH
Confidence 36877777899999999998 3467899999999999999998766554 333333444445566
Q ss_pred hhCCCeEEEeeccCC--------CCcccCHHHHHHhhcC----CceEEEEeCCCCC-cccccCHHHHHHHHHHHHHcCcE
Q 014603 152 THSHLEVRHFDLLPA--------KGWEVDLDAVEALADE----NTVALVIINPGNP-CGNVYTYQHLQKIAETAKKLGIM 218 (422)
Q Consensus 152 ~~~g~~~~~~~~~~~--------~~~~~d~~~l~~~~~~----~~~~i~i~~p~np-tG~~~~~~~l~~i~~~~~~~~~~ 218 (422)
...|..++.++.... ....+|++.+++.+++ .+.++++...+|. .|..++.+++++|.++|++||++
T Consensus 140 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~ 219 (467)
T d2v1pa1 140 QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIP 219 (467)
T ss_dssp HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCE
Confidence 678888887765421 1246789999987753 3455666666664 46788999999999999999999
Q ss_pred EEEcccccccc----------cCCCCCCCc-cccCCCCCeEEEecCccccCCCCceeEEEEeeCCCCcccchhHHHHHH-
Q 014603 219 VIADEVYDHLA----------FGNTPFVPM-GVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPNGILQDSGIVDSIK- 286 (422)
Q Consensus 219 li~D~~~~~~~----------~~~~~~~~~-~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~- 286 (422)
+|+|+++.... +.+.....+ ..+... ..++..|.+|.+++++ .|+++.++ +.+....+
T Consensus 220 l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~d~~s~s~~K~~~~~~--gg~i~~~~-------~~~~~~~~~ 289 (467)
T d2v1pa1 220 VVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKY-ADMLAMSAKKDAMVPM--GGLLCMKD-------DSFFDVYTE 289 (467)
T ss_dssp EEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGG-CSEEEEESSSTTCCSS--CEEEEECS-------GGGHHHHHH
T ss_pred EEEechhhhccccccccccccccCCcccccchhhccc-CCEEEecCCCCCCCCC--ceeEEecc-------hhhhhHHHh
Confidence 99999975311 111110000 001111 1266668888865443 46666543 22222222
Q ss_pred --hhhh-h-----ccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceEEEEe----
Q 014603 287 --SFLN-I-----SSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMFVMVK---- 354 (422)
Q Consensus 287 --~~~~-~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~---- 354 (422)
.... . .+........+....+.... ..+..++..++.+++.+.|++. ++. + .+..+....+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~-~~~-v-~~~~~~~~~~~~~~~ 363 (467)
T d2v1pa1 290 CRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM---NLDWLAYRIAQVQYLVDGLEEI-GVV-C-QQAGGHAAFVDAGKL 363 (467)
T ss_dssp HHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHT-TCC-E-EEECSSCEEEEHHHH
T ss_pred hcccccccccCcchhhhHHHHHHHHHHHhHHhh---hHHHHHHHHHHHHHHHHHHHhc-CCc-c-cCCCccceeecchhh
Confidence 2111 1 11222233333333333221 1233444456677777788776 333 2 12112122121
Q ss_pred cCcccccCCCCHHHHHHHHHHhcCeEEecCC-------------CCCCCCeEEEEec---cChHHHHHHHHHHHHHHHHh
Q 014603 355 LNYSLLEGINSDMEFALKLAKEESVIVLPGI-------------TVGLKDWLRITFA---VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-------------~~~~~~~iRis~~---~~~~~l~~~~~~l~~~~~~~ 418 (422)
++....... ........++.+.||...... .+.....+|++++ .+++++|++++.|++++++.
T Consensus 364 ~~~~~~~~~-~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~ 442 (467)
T d2v1pa1 364 LPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp STTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred cCCcchhhh-hhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 111111111 234456667778888543211 1122568999975 48899999999999998653
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.73 E-value=8.3e-17 Score=148.34 Aligned_cols=333 Identities=12% Similarity=0.029 Sum_probs=185.5
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCC--C-----C-CC--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFN--C-----Y-SS--TVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~-----y-~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
..||+-|. .+.|++|+++|.+.+.+.... + . .+ ...+.+.|+.++++++. + +...|+++
T Consensus 4 ~~~F~pGP------~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~----~-~~~~i~~~ 72 (361)
T d2c0ra1 4 AYNFNAGP------AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGN----P-TGYKVLFI 72 (361)
T ss_dssp CEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTC----C-SSEEEEEE
T ss_pred CcccCCCC------cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCC----C-CCCEEEEE
Confidence 35675554 367899999999987542100 0 0 00 12245566667666632 1 23367776
Q ss_pred cCH-HHHHHHHHHHhcCCCCEEEecCCCcc--chHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 117 LGC-TQAIEVILTVLARPGANILLPRPGFP--YYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 117 ~g~-~~a~~~~~~~l~~~gd~Vl~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+|+ +.+++++...+..+|+.+++...... .+...++..|..+..+...... .++++.+++.+..++. . ..+
T Consensus 73 ~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~---~v~ 146 (361)
T d2c0ra1 73 QGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQDNA-A---YLH 146 (361)
T ss_dssp SSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCCTTE-E---EEE
T ss_pred CCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhcccCcc-e---EEE
Confidence 665 55667777788888998887765553 3466777788888777765433 3667777776655443 2 234
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
|.||...+ +.+|.++|+++|+++++|.+++. |..+.++..++ +.+.|.+|.++++|....++....-.
T Consensus 147 ~~tg~~~~---~~~i~~~~~~~~al~~vDavss~----g~~~id~~~~d-----i~~~s~~k~~~~~~~~~~~~~~~~~~ 214 (361)
T d2c0ra1 147 LTSNETIE---GAQFKAFPDTGSVPLIGDMSSDI----LSRPFDLNQFG-----LVYAGAQKNLGPSGVTVVIVREDLVA 214 (361)
T ss_dssp EESEETTT---TEECSSCCCCTTSCEEEECTTTT----TSSCCCGGGCS-----EEEEETTTTTCCSSCEEEEEEGGGSS
T ss_pred Eeccccee---cceEEEeeccCCceEEEEeeccc----cccccccccce-----eEEEecccccccccCcEEEEEhHHhh
Confidence 56777754 55667789999999999999986 44444444443 56678899988776433333221100
Q ss_pred Ccc----cchhHHHHHHhhhhhccCcchHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCCC-
Q 014603 274 GIL----QDSGIVDSIKSFLNISSDPATFIQGAVPQILEK-TEEEFFSKITDILRETADICCDRLKEIPCIT-CPKKPE- 346 (422)
Q Consensus 274 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~- 346 (422)
... ....+.. ..........+.+.....+..++.. ...........+.+..+..+........... ....+.
T Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (361)
T d2c0ra1 215 ESPKHLPTMLRYDT-YVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDS 293 (361)
T ss_dssp SCCTTSCGGGCHHH-HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGG
T ss_pred hCcccccccccccc-ccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhh
Confidence 000 0011111 1111111222222222222222221 1122233344444455555555444432211 111111
Q ss_pred -CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHH
Q 014603 347 -GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDR 417 (422)
Q Consensus 347 -~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~ 417 (422)
+.....+.++... ++.++. ..++++||.+.+|..+- +.|||++. ++.||++++++.|+++.++
T Consensus 294 rS~~~~~~~~~~~~-----~~~~~~-~~L~~~GI~~~~G~~~~--g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 294 RSDMNITFRLASEE-----LEKEFV-KASEQEGFVGLKGHRSV--GGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp BCSSEEEEECSCHH-----HHHHHH-HHHHHTTEESCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcc-----cHHHHH-HHHHHCCCEEecCCCcC--CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 1233445555421 234444 55678899999986532 35999997 6899999999999887654
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=6.1e-16 Score=142.25 Aligned_cols=335 Identities=13% Similarity=-0.043 Sum_probs=186.3
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCCC-----C---C--CCCCHHHHHHHHHHHhhcCCCCCCCCCEEEe
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNCY-----S---S--TVGILPARRAIADYLNRDLPYKLSPDDVYLT 116 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y-----~---~--~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~~ 116 (422)
+-||+-|. ...|++|+++|.+.+.+...... . + ...+.+.|+.++++++. -+...|+++
T Consensus 2 ~~nF~pGP------~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~-----~~~~~v~~~ 70 (360)
T d1bjna_ 2 IFNFSSGP------AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNV-----PSNYKVLFC 70 (360)
T ss_dssp CEECCSSS------CCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTC-----CTTEEEEEE
T ss_pred eEEeCCCC------cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCC-----CCCCEEEEE
Confidence 45775554 35689999999998754211111 0 0 12256778888888842 123467887
Q ss_pred cCHHHHHHHH-HHHhcCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCC
Q 014603 117 LGCTQAIEVI-LTVLARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPG 193 (422)
Q Consensus 117 ~g~~~a~~~~-~~~l~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~ 193 (422)
+|++++.+.+ ...+..+++.+++....+.+ +...++..+...+....... ...+.+.+++.+..+++++.+++.+
T Consensus 71 ~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~~~~ 148 (360)
T d1bjna_ 71 HGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTV--DGLRAVKPMREWQLSDNAAYMHYCP 148 (360)
T ss_dssp SSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEE--TTEEEECCGGGCCCCSSCSCEEECS
T ss_pred CCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccC--CCcchhhhhhhhccCCceeEEEecc
Confidence 7765555544 44567777888888766654 34455555655544443322 2245566666677788888888888
Q ss_pred CCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCCC
Q 014603 194 NPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDPN 273 (422)
Q Consensus 194 nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~~ 273 (422)
|.||+..+... + .++.+++++++|.+++.. .. ++...+.+ +.+.|.+|.+++++.. +.++.....
T Consensus 149 ~~t~~~~~~~~---i--~~~~~~~~v~vDa~~~~~----~~--~vd~~~~d---v~~~ss~k~~~~~~~~-~~~~~~~~~ 213 (360)
T d1bjna_ 149 NETIDGIAIDE---T--PDFGADVVVAADFSSTIL----SR--PIDVSRYG---VIYAGAQKNIGPAGLT-IVIVREDLL 213 (360)
T ss_dssp EETTTTEECCC---C--CCCCTTCCEEEECTTTTT----SS--CCCGGGCS---EEEEETTTTTSSTTCE-EEEEEGGGC
T ss_pred cccccCccccc---e--ecccccceeeeeeecccc----ce--eeeeccce---eEEEEcccccccCCCc-eeEeeehhh
Confidence 88888754332 2 346778999999988752 22 22222222 7788889997666543 334333221
Q ss_pred Ccccc----hhHHHHHHhhhhhccCcch-HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC---
Q 014603 274 GILQD----SGIVDSIKSFLNISSDPAT-FIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKP--- 345 (422)
Q Consensus 274 ~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--- 345 (422)
..... ................+.. ....+....+........+...++.++....+...+...........+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 293 (360)
T d1bjna_ 214 GKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNR 293 (360)
T ss_dssp SCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGB
T ss_pred hhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccc
Confidence 11000 0001111111111112222 222222222221112334445555555555555555554222211111
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 346 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
+.+ .+.+.++... +..++.. +++++||.+..|... -+.||||+. ++.||++++++.|+++.+++
T Consensus 294 s~~-v~~f~~~~~~-----~~~~~~~-~l~~~Gi~~~~G~~~--~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 294 SRM-NVPFQLADSA-----LDKLFLE-ESFAAGLHALKGHRV--VGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp CSS-EEEEEESSGG-----GHHHHHH-HHHHTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cce-EEEEEcCCcc-----cHHHHHH-HHHHCCCEeecCCCc--cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 223 3344565431 3455554 457789999888543 245999997 78999999999999877654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.63 E-value=1.2e-14 Score=133.65 Aligned_cols=330 Identities=14% Similarity=0.010 Sum_probs=173.1
Q ss_pred ceeecCCCCCCCCCCCCcHHHHHHHHHHhhCCCCCC--C------CC--CCCCHHHHHHHHHHHhhcCCCCCCCC-CEEE
Q 014603 47 LIPLGHGDPSAFPSFRTASVAVDAIVHSVRSARFNC--Y------SS--TVGILPARRAIADYLNRDLPYKLSPD-DVYL 115 (422)
Q Consensus 47 ~i~l~~g~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--y------~~--~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~ 115 (422)
+-||+-|. .+.|++|+++|.+++.+..... . .+ ...+.+.|+.++++++ ++.+ .|++
T Consensus 4 ~~nF~pGP------~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~------~~~~~~i~~ 71 (360)
T d1w23a_ 4 VFNFNAGP------SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ------IPNDYQILF 71 (360)
T ss_dssp CEECCSSS------CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEE
T ss_pred eeEeCCCC------cCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC------CCCCCEEEE
Confidence 44677665 3567999999999875421100 0 00 1134678888999984 3444 6788
Q ss_pred ecCHHHHHHHHHH-HhcCCCCEEEecCCCccc--hHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCC
Q 014603 116 TLGCTQAIEVILT-VLARPGANILLPRPGFPY--YEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINP 192 (422)
Q Consensus 116 ~~g~~~a~~~~~~-~l~~~gd~Vl~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p 192 (422)
++|++++...+.. .+..+++.+++....+++ +...+...+............ ...++.++......+ +++.
T Consensus 72 ~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~ 145 (360)
T d1w23a_ 72 LQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--YQSIPDFSEFQLNEN----DAYL 145 (360)
T ss_dssp ESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--SCSCCCGGGCCCCTT----EEEE
T ss_pred eCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--ccchhhhhhcccccc----ccee
Confidence 8888777665554 456677888887766543 344555556555544432211 123344444333222 2334
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCCCCceeEEEEeeCC
Q 014603 193 GNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIVPGWRLGWLVTSDP 272 (422)
Q Consensus 193 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~G~r~G~~~~~~~ 272 (422)
.|.||... ++++|.++|+++|+++|+|.+++. |+...++..++ +.+.+++|.++++|. .|+++....
T Consensus 146 ~~~tg~~~---~~~~i~~~~~~~g~l~ivDavqs~----g~~~id~~~~~-----vd~~~~~~~k~~~~~-~~~~~~~~~ 212 (360)
T d1w23a_ 146 HITSNNTI---YGTQYQNFPEINHAPLIADMSSDI----LSRPLKVNQFG-----MIYAGAQKNLGPSGV-TVVIVKKDL 212 (360)
T ss_dssp EEESEETT---TTEECSSCCCCCSSCEEEECTTTT----TSSCCCGGGCS-----EEEEETTTTTSCTTC-EEEEEEHHH
T ss_pred EecCCccc---cceeeeeccccceeeEEeeccccc----ccccccccccc-----ceEEeeccccccCCc-ceeeEechh
Confidence 55678874 466778899999999999999987 44444555544 556667777655543 344443210
Q ss_pred C----Cccc-chhHHHHHHhhhhhccCcchHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCC
Q 014603 273 N----GILQ-DSGIVDSIKSFLNISSDPATFIQGAVPQILEKTE-EEFFSKITDILRETADICCDRLKEIPCITC-PKKP 345 (422)
Q Consensus 273 ~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~ 345 (422)
. .... ....... ........++......+....+.... .........+.+.................. ...+
T Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (360)
T d1w23a_ 213 LNTKVEQVPTMLQYATH-IKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEK 291 (360)
T ss_dssp HCSCCTTCCGGGCHHHH-HHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCG
T ss_pred hhcccccCCcchhhhhh-hhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCCh
Confidence 0 0000 0001111 11111122333332222222222111 111222223333333333333333212111 1112
Q ss_pred C--CceEEEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCCCCCeEEEEec--cChHHHHHHHHHHHHHHH
Q 014603 346 E--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEDGLGRMKAFYD 416 (422)
Q Consensus 346 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~~ 416 (422)
. +...+.+.++... ++.++.. .+.++||.+..|..+. +.+|+|+. ++.|+++++++.++++.+
T Consensus 292 ~~rS~~vvsf~i~~~~-----~~~~~~~-~l~~~GI~~~~G~~~~--ggiRiS~~~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 292 GSRSLMNVTFNLRNEE-----LNQQFLA-KAKEQGFVGLNGHRSV--GGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp GGBCSSEEEEECSSHH-----HHHHHHH-HHHHTTEESCBCCTTT--CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred hhcceeEEEEEcCCCc-----cHHHHHH-HHHHCCCeeeeCCCcc--CcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence 1 1123445565421 2345554 5577899998886543 45999986 589999999998777654
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=1.1e-11 Score=114.06 Aligned_cols=283 Identities=20% Similarity=0.177 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc-CCCCEEEecCCCccch----HHHHhhCCCeEEEeeccC
Q 014603 91 PARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA-RPGANILLPRPGFPYY----EARATHSHLEVRHFDLLP 165 (422)
Q Consensus 91 ~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~----~~~~~~~g~~~~~~~~~~ 165 (422)
++++.+++.. +.+.-+.-...|++.....++.+.. ...+++++...+|+.+ ...++..|++++.++.+.
T Consensus 112 e~q~~l~elt------Gmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~ 185 (437)
T d1wyua1 112 EYQTMIAELA------GLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEG 185 (437)
T ss_dssp HHHHHHHHHH------TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBT
T ss_pred HHHHHHHHhh------CCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccc
Confidence 5566666665 3444456666788888777765542 2447899998888655 344567899999888643
Q ss_pred CCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCC
Q 014603 166 AKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIV 245 (422)
Q Consensus 166 ~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~ 245 (422)
. ..+.++ +++++.++++.+|+. .|.. +++++|.+++++.|.+++.|..-..+ .+ ..+...++.|
T Consensus 186 ~---~~~~~~----~~~~~Aavmi~~Pnt-~G~~---ed~~~i~~~~h~~G~l~~~~ad~~al--~~--l~~Pg~~GaD- 249 (437)
T d1wyua1 186 G---RTPLPE----VGEEVGAVVVQNPNF-LGAL---EDLGPFAEAAHGAGALFVAVADPLSL--GV--LKPPGAYGAD- 249 (437)
T ss_dssp T---BCCCCC----CCTTEEEEEEESSCT-TSBC---CCHHHHHHHHHHTTCEEEEECCTTGG--GT--BCCHHHHTCS-
T ss_pred c---cchhhh----hccceeEEEEccccc-cccc---cchHHHHHHhhhccceEEeeechhhh--hc--cccccccccc-
Confidence 2 223222 566889999999976 7887 67899999999999988777543222 12 1233455555
Q ss_pred CeEEEecCccccCCC----CceeEEEEeeCCCCcccchhHHHHH----------------------------Hhhhhhc-
Q 014603 246 PVLTLGSISKRWIVP----GWRLGWLVTSDPNGILQDSGIVDSI----------------------------KSFLNIS- 292 (422)
Q Consensus 246 ~~i~i~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~- 292 (422)
|++++ +|.|+.| |...|++.+.+. +...+ ++....+
T Consensus 250 --i~~g~-~q~fg~p~g~GGP~~G~~a~~~~--------l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsn 318 (437)
T d1wyua1 250 --IAVGD-GQSLGLPMGFGGPHFGFLATKKA--------FVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSN 318 (437)
T ss_dssp --EEEEE-CTTTTCCCGGGCSCCEEEEECGG--------GGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCC
T ss_pred --eEeec-cceeccccCCCcCccccccccch--------hhccccccccccccccCCcccceeecccccccccccccccc
Confidence 66666 5554432 445788877532 21111 1111111
Q ss_pred -cCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCceE-EEEecCcccccCCCCHHHHH
Q 014603 293 -SDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPKKPEGSMF-VMVKLNYSLLEGINSDMEFA 370 (422)
Q Consensus 293 -~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 370 (422)
++...+....+..++.....+++++..++...++.++.+.|.+++++. ...+...+. +.+.++. +..++.
T Consensus 319 ict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~-~~~~~~~f~ef~v~~~~-------~~~~i~ 390 (437)
T d1wyua1 319 ITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVR-PFTPKPFFNEFALALPK-------DPEAVR 390 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE-ECSCSSBCSEEEEECSS-------CHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCee-ccCCCCeeeEEEEECCC-------CHHHHH
Confidence 233333444444455545578899999999999999999999988876 323332211 2234432 567777
Q ss_pred HHHHHhcCeEEecC-CCCCCCCeEEEEec--cChHHHHHHHHHHHHHH
Q 014603 371 LKLAKEESVIVLPG-ITVGLKDWLRITFA--VEPSALEDGLGRMKAFY 415 (422)
Q Consensus 371 ~~l~~~~gi~v~~g-~~~~~~~~iRis~~--~~~~~l~~~~~~l~~~~ 415 (422)
.+++ ++|+....- .....++.+.|+++ .++++|+++++++++++
T Consensus 391 k~L~-d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 391 RALA-ERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp HHHH-HTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHH-hCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 7764 568753111 11223678999998 68899999999998863
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=3.3e-10 Score=105.42 Aligned_cols=320 Identities=15% Similarity=0.062 Sum_probs=191.1
Q ss_pred CcHHHHHHHHHHhhCCCCCCCCC---CCC----CHHHHHHHHHHHhhcCCCCCCCCCEEEecCHHHHHHHHHHHhc---C
Q 014603 63 TASVAVDAIVHSVRSARFNCYSS---TVG----ILPARRAIADYLNRDLPYKLSPDDVYLTLGCTQAIEVILTVLA---R 132 (422)
Q Consensus 63 ~~~~v~~a~~~~~~~~~~~~y~~---~~g----~~~lr~~ia~~l~~~~~~~~~~~~i~~~~g~~~a~~~~~~~l~---~ 132 (422)
.+|.+.+.+.+.+. .+..|.| ++| +-+++..|+++. +.+.-+.-...|+|++-++++.+.. +
T Consensus 77 y~P~v~~~~~~~~T--aYTPYQPaEiSQG~LQalfEfQtmi~eLT------GMdvaNaS~yDGatA~aeA~~ma~r~~~~ 148 (471)
T d1wyub1 77 YNPKLHEEAARLFA--DLHPYQDPRTAQGALRLMWELGEYLKALT------GMDAITLEPAAGAHGELTGILIIRAYHED 148 (471)
T ss_dssp CCCHHHHHHHHTTS--SCCTTSCGGGCHHHHHHHHHHHHHHHHHH------TCSEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHh--ccCCCCCHHHHHHHHHHHHHHHHHHHHHh------CCCccccccchHHHHHHHHHHHHHHHhhh
Confidence 34677777765321 2345554 222 336677788877 4444455566777777666554431 1
Q ss_pred CC----CEEEecCCCcc-chHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceEEEEeCCCCCcccccCHHHHHH
Q 014603 133 PG----ANILLPRPGFP-YYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVALVIINPGNPCGNVYTYQHLQK 207 (422)
Q Consensus 133 ~g----d~Vl~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~nptG~~~~~~~l~~ 207 (422)
.+ ..+++..+.++ .........+..++.++.. .....+.+.++.....++.++++.+|++..+.. +..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e---~~~~~ 223 (471)
T d1wyub1 149 RGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG--PEGEVDLEALKRELGPHVAALMLTNPNTLGLFE---RRILE 223 (471)
T ss_dssp TTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC--TTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCC---TTHHH
T ss_pred cccccccccccCCcccccceeeeeecccceeeccccc--ccccccchhhhhhhhccccceeeccCCCccccc---chhhh
Confidence 22 23444444444 4445555667777777654 334578888888888788889999998866555 45778
Q ss_pred HHHHHHHcCcEEEEcccccccccCCCCCCCccccCCCCCeEEEecCccccCC----CCceeEEEEeeCCCCcccchhHHH
Q 014603 208 IAETAKKLGIMVIADEVYDHLAFGNTPFVPMGVFGSIVPVLTLGSISKRWIV----PGWRLGWLVTSDPNGILQDSGIVD 283 (422)
Q Consensus 208 i~~~~~~~~~~li~D~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~ 283 (422)
+.+++++.+..+++|.+...... +. ........+ +++.+.++.||. .|.-+|++.+.+ ++..
T Consensus 224 ~~~~~h~~g~~~~~~~~~~~~~~-~l--~~p~~~g~d---iv~vg~~q~~G~P~~~GGP~~G~~a~~~--------~~~R 289 (471)
T d1wyub1 224 ISRLCKEAGVQLYYDGANLNAIM-GW--ARPGDMGFD---VVHLNLHKTFTVPHGGGGPGSGPVGVKA--------HLAP 289 (471)
T ss_dssp HHHHHHHHTCEEEEEGGGGGGTT-TT--CCHHHHTCS---EEECCTTTTTCCCCTTSCCCCCCEEECG--------GGGG
T ss_pred hHHHHHhccccccccccchhhhh-hc--cccCccccc---ccccccccccccccccccccccceeehh--------hhhc
Confidence 88888899988888766443221 11 111122222 444445555433 345578888753 3333
Q ss_pred HHHh----------------hhh----hccCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 014603 284 SIKS----------------FLN----ISSDPATFIQGAVPQILEKTEEEFFSKITDILRETADICCDRLKEIPCITCPK 343 (422)
Q Consensus 284 ~~~~----------------~~~----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 343 (422)
++.. .++ ..++.+.+...++..++.....+++++..+....+..+++++|+. +|+.+.
T Consensus 290 ~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~- 367 (471)
T d1wyub1 290 YLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVP- 367 (471)
T ss_dssp GCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCS-
T ss_pred cCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceec-
Confidence 3321 000 112233344444444555556889999999999999999999977 587733
Q ss_pred CCCCceE--EEEecCcccccCCCCHHHHHHHHHHhcCeEEecCCCCC-CCCeEEEEec--cChHHHHHHHHHHHHHHHHh
Q 014603 344 KPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-LKDWLRITFA--VEPSALEDGLGRMKAFYDRH 418 (422)
Q Consensus 344 ~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~iRis~~--~~~~~l~~~~~~l~~~~~~~ 418 (422)
.+. .+| +.+.++.+ .+..++..+|++ +|+.-....+.. .++.+-|+++ ++++|||.+++.|++++++.
T Consensus 368 ~~~-~ff~EFvv~~~~~-----~~~~~i~k~L~~-~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 368 YDG-PSMHEFVAQPPEG-----FRALDLAKGLLE-LGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp SCS-SCCSCEEEBCSTT-----CCHHHHHHHHHH-TTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred cCc-ceeeEEeecCCCC-----CCHHHHHHHHHH-cCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 222 222 22344322 246677777765 587542122222 2678889987 78999999999999988753
|
| >d1ofux_ c.37.1.22 (X:) Hypothetical protein PA3008 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Bacterial cell division inhibitor SulA domain: Hypothetical protein PA3008 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.21 E-value=2.8 Score=29.40 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=64.4
Q ss_pred CEEEecCHHHHHHHHHHH---hcCCC--CEEEecCCCccchHHHHhhCCCeEEEeeccCCCCcccCHHHHHHhhcCCceE
Q 014603 112 DVYLTLGCTQAIEVILTV---LARPG--ANILLPRPGFPYYEARATHSHLEVRHFDLLPAKGWEVDLDAVEALADENTVA 186 (422)
Q Consensus 112 ~i~~~~g~~~a~~~~~~~---l~~~g--d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 186 (422)
++.....+.+.+..++-. +.+.+ .-|+...|-+..+.......|+....+-+....+..-....+|+.++.++..
T Consensus 6 el~~~~~~~~~l~LL~P~L~~l~~~~~~rwi~wI~Pp~~p~a~~L~~~Gi~~~rll~v~~~~~~d~lwa~EqaL~sg~~~ 85 (119)
T d1ofux_ 6 ELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSH 85 (119)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEE
T ss_pred eecccCCcHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCccCHHHHHHcCCCCCeEEEEeCCChHHHHHHHHHHHhcCCcc
Confidence 345555566656665544 34333 3477777777888888888887643322222222111344567777777777
Q ss_pred EEEeCCCCCcccccCHHHHHHHHHHHHHcCcEEE
Q 014603 187 LVIINPGNPCGNVYTYQHLQKIAETAKKLGIMVI 220 (422)
Q Consensus 187 i~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li 220 (422)
.++..+.+ ++...++++.-.|++.+...+
T Consensus 86 aVl~w~~~-----l~~~~~RRLqlAA~~g~t~~~ 114 (119)
T d1ofux_ 86 TVVSWLEP-----LSRAARKQLSRAAQLGQAQSL 114 (119)
T ss_dssp EEEECCSS-----CCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEcCCC-----CChHHHHHHHHHHHhcCCEEE
Confidence 77787643 556778888888888877654
|