Citrus Sinensis ID: 014634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
MFNDDASNLDVPFLVDEEANHLGNDDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
ccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccccccccHcccccccccccccccccHHHHHHHHHHEEHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEEHHHHHHHHHHHEHEEEEccHHHHHHcccccccccccccccccEEEEEEEEEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mfnddasnldvpflvdeeanhlgnddsrtsktsffktcfngvnalsgvgilstpyalasGGWLSLLLLFLIAAATFYSGLLIKRCMDldsniksypdigdrafgrngRIIVSIFMNIELYLVATGFLilegdnlenlfpnfaievggltigaKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSifstgafdgvgfhrkgtlvnwkgiptsiSLYAFcycahpvfptlytsmkkkhqFSHVLLVCFFLCTFIYASMAVFGYLMFGSEvqsqitlnlpttklsSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFstqyskrpysLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLcylkisgayrrhgCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
mfnddasnldVPFLVDEEANHLGNDDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSypdigdrafgRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
MFNDDASNLDVPFLVDEEANHLGNDDSRTSKTSFFKTCFNGVNALSGVGILSTPYalasggwlsllllfliaaaTFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
********************************SFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHY*
************************************TCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
********LDVPFLVDEEANHLGNDDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
****************************TSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
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MFNDDASNLDVPFLVDEEANHLGNDDSRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIGHYV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query421 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.826 0.578 0.294 5e-35
Q6PF45518 Vesicular inhibitory amin N/A no 0.802 0.652 0.235 2e-19
Q6DIV6518 Vesicular inhibitory amin yes no 0.793 0.644 0.238 8e-19
P34579486 Vesicular GABA transporte no no 0.909 0.788 0.235 5e-18
Q9H598525 Vesicular inhibitory amin yes no 0.781 0.626 0.236 3e-16
O35458525 Vesicular inhibitory amin yes no 0.805 0.645 0.233 4e-16
O35633525 Vesicular inhibitory amin yes no 0.805 0.645 0.233 4e-16
Q95KE2525 Vesicular inhibitory amin N/A no 0.805 0.645 0.233 4e-16
Q5EA97463 Putative sodium-coupled n no no 0.869 0.790 0.240 4e-13
Q9FKS8446 Lysine histidine transpor no no 0.845 0.798 0.244 5e-13
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 188/394 (47%), Gaps = 46/394 (11%)

Query: 36  KTCFNGVNALSGVGILSTPYALASGGW-LSLLLLFLIAAATFYSGLLIKRCMDLDSNIKS 94
           +T FN +N L G+G+L+ P  L   GW + L +L + A ATF +  L+ RC+D D  + S
Sbjct: 212 QTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDPTLIS 271

Query: 95  YPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQ 154
           Y D+G  AFG  GR ++S    ++L       +IL GD+L  LFP ++      T     
Sbjct: 272 YADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYST-----TFFKIV 326

Query: 155 SFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVN- 213
           SF ++   + +P   L N+SLL  +S +G +  I   G   S+           G+LVN 
Sbjct: 327 SFFIVTPPVFIPLSVLSNISLLGILSTTGTVLVICCCGLYKSSSP---------GSLVNP 377

Query: 214 -----W----KGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVCFFLCTFIYAS 264
                W    K +  SI L + C+  H VFP L T M+   +F   L   + + +     
Sbjct: 378 METSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTDIG 437

Query: 265 MAVFGYLMFGSEVQSQITLNLPTTKLSSR-----VAIYTTLVNPIAKYALMVTPVVNTIK 319
            AV G+LMFG+ V+ +IT N+  T+   +     ++   T++ PIAK  L   P+V+ + 
Sbjct: 438 TAVIGFLMFGNLVKDEITKNVLLTEGYPKFVYGLISALMTII-PIAKTPLNARPIVSVLD 496

Query: 320 MRFSTQYSKRPYSLL---ISTGFVIST--------VIVALVVPFFGYLMALVGAFLSMTA 368
           +  + Q+     S +    + G  +          V++A+  P F  ++A +GA L  T 
Sbjct: 497 VLMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGAGLCFTI 556

Query: 369 SVILPCLCYLKISGA----YRRHGCEMMAILGIV 398
            +ILPC  YL++       + R  C +   + +V
Sbjct: 557 CLILPCWFYLRLCKTTIKPWERVACHVTICISVV 590
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|Q5EA97|S38AB_BOVIN Putative sodium-coupled neutral amino acid transporter 11 OS=Bos taurus GN=SLC38A11 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
255582131404 amino acid transporter, putative [Ricinu 0.923 0.962 0.718 1e-163
225452805428 PREDICTED: vacuolar amino acid transport 0.988 0.971 0.655 1e-163
359488998417 PREDICTED: vacuolar amino acid transport 0.952 0.961 0.678 1e-161
224140995388 amino acid transporter [Populus trichoca 0.919 0.997 0.702 1e-157
224140997386 amino acid transporter [Populus trichoca 0.914 0.997 0.711 1e-155
359488992428 PREDICTED: vacuolar amino acid transport 0.985 0.969 0.655 1e-154
147807770421 hypothetical protein VITISV_027355 [Viti 0.980 0.980 0.628 1e-152
225436061421 PREDICTED: vacuolar amino acid transport 0.961 0.961 0.640 1e-152
449459482432 PREDICTED: vacuolar amino acid transport 0.983 0.958 0.641 1e-152
449520301436 PREDICTED: vacuolar amino acid transport 0.990 0.956 0.632 1e-152
>gi|255582131|ref|XP_002531860.1| amino acid transporter, putative [Ricinus communis] gi|223528510|gb|EEF30538.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/394 (71%), Positives = 334/394 (84%), Gaps = 5/394 (1%)

Query: 3   NDDASNLDVPFLVDE---EANHLGNDDSRTSK--TSFFKTCFNGVNALSGVGILSTPYAL 57
             + ++L +P ++DE   E  H+  D ++  K  T FFKTCFNG+NALSGVGILSTPYA+
Sbjct: 5   EQEEASLIIPLILDEKQEEVGHVEEDCNQYEKGTTGFFKTCFNGLNALSGVGILSTPYAV 64

Query: 58  ASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNI 117
           ASGGWLSL+ LF IA +TFYSGLLIKRCM++DSNI++YPDIG+RAFG  GR ++SIFM +
Sbjct: 65  ASGGWLSLIFLFTIAISTFYSGLLIKRCMEVDSNIRTYPDIGERAFGSKGRGLISIFMYV 124

Query: 118 ELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLS 177
           ELYLVATGFLILEGDNL+NLFPN  IEV G  IG KQSFV+++ALIILPT+WLDNLS+LS
Sbjct: 125 ELYLVATGFLILEGDNLQNLFPNVDIEVAGFHIGGKQSFVILVALIILPTIWLDNLSILS 184

Query: 178 YVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTL 237
           YVSASGVLAS I LGSIF  GAFDGVGFH KG L++  GIPT++SLYAFCYCAHPVFPTL
Sbjct: 185 YVSASGVLASAIILGSIFCAGAFDGVGFHEKGKLLHLDGIPTAVSLYAFCYCAHPVFPTL 244

Query: 238 YTSMKKKHQFSHVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIY 297
           YTSMKKKHQFS+VLL+CF +CTF Y+SMA+ GY MFGS VQSQ+TLNLPT KLSS++AIY
Sbjct: 245 YTSMKKKHQFSNVLLICFVICTFSYSSMAIIGYKMFGSGVQSQVTLNLPTGKLSSKMAIY 304

Query: 298 TTLVNPIAKYALMVTPVVNTIKMRFSTQYSKRPYSLLISTGFVISTVIVALVVPFFGYLM 357
           TTL NPI+KYALMVTP+VN  K  F    +K+P+++LIST  +ISTVIVAL VPFFGYLM
Sbjct: 305 TTLFNPISKYALMVTPIVNATKNWFPWSCNKKPFTILISTTILISTVIVALAVPFFGYLM 364

Query: 358 ALVGAFLSMTASVILPCLCYLKISGAYRRHGCEM 391
           +LVGAFLS+TAS+ILPCLCYLKISG+ RR G EM
Sbjct: 365 SLVGAFLSVTASIILPCLCYLKISGSLRRLGYEM 398

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452805|ref|XP_002283468.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|296082904|emb|CBI22205.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488998|ref|XP_003633855.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082909|emb|CBI22210.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140995|ref|XP_002323861.1| amino acid transporter [Populus trichocarpa] gi|222866863|gb|EEF03994.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224140997|ref|XP_002323862.1| amino acid transporter [Populus trichocarpa] gi|222866864|gb|EEF03995.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359488992|ref|XP_002283458.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082903|emb|CBI22204.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147807770|emb|CAN62250.1| hypothetical protein VITISV_027355 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225436061|ref|XP_002276455.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|296083999|emb|CBI24387.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459482|ref|XP_004147475.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520301|ref|XP_004167172.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query421
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.954 0.992 0.614 1.8e-135
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.990 0.985 0.583 4.6e-128
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.947 0.725 0.412 1.1e-87
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.919 0.722 0.403 6.4e-85
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.904 0.724 0.409 1.8e-80
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.954 0.761 0.387 9.5e-80
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.907 0.694 0.403 1.6e-79
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.819 0.631 0.430 2.3e-78
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.954 0.767 0.389 3.4e-77
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.904 0.894 0.329 6.3e-53
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
 Identities = 249/405 (61%), Positives = 314/405 (77%)

Query:    15 VDEEANHLGNDDSRTSKTSFFKTCFNGVNALSGVGILSTPYXXXXXXXXXXXXXXXXXXX 74
             ++E+   +  D+  +S  SFFKTCFN +NALSG+GILS PY                   
Sbjct:     1 MEEDNQEIQRDNVGSS--SFFKTCFNALNALSGIGILSVPYSLARGGWLSLSLLLLLAVT 58

Query:    75 TFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNL 134
              FY+ LLI +CM+ D NIK+YPDIG+RAFGR GRIIVS+FM++ELYLV TGFLILEGDNL
Sbjct:    59 AFYTSLLITKCMNADRNIKTYPDIGERAFGRPGRIIVSVFMHLELYLVTTGFLILEGDNL 118

Query:   135 ENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLASIITLGSI 194
              NLFP F IE+ GL +  KQ+F+  +A +I+PT+W DNLS+LSYVS SGVLA+ +TLGSI
Sbjct:   119 HNLFPGFTIEMIGLRLNGKQAFMATVAFVIMPTLWWDNLSVLSYVSMSGVLATTVTLGSI 178

Query:   195 FSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSHVLLVC 254
                GAFDG+GFH+KG L+NW GIPT++SLYAFCY AHPV PTLY+SMK KHQF++VLL+C
Sbjct:   179 SWIGAFDGIGFHQKGKLINWSGIPTALSLYAFCYGAHPVLPTLYSSMKSKHQFNNVLLIC 238

Query:   255 FFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPV 314
             F LCT  Y SMAV GYLM+GS+  SQITLNLP  K SS+VAIYTTLVNP+AKYALM+TP 
Sbjct:   239 FILCTIGYTSMAVLGYLMYGSQTLSQITLNLPIHKTSSKVAIYTTLVNPVAKYALMITPT 298

Query:   315 VNTIKMRFSTQYSKRPY-SLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILP 373
             VNTIK  F ++YSK+ Y  LLIST F+IS+V++A  +PFFGY+M+LVGA LS+T S++LP
Sbjct:   299 VNTIKDWFPSRYSKKAYLHLLISTFFIISSVVIAETLPFFGYMMSLVGALLSVTVSILLP 358

Query:   374 CLCYLKISGAYRRHGCEMMAILGIVSLAVLIAVVGTYVSLVQIIG 418
             CLCYLKI G Y++ GCE + + G+V ++V + V+GTY++L  IIG
Sbjct:   359 CLCYLKIFGNYKKIGCETIMLFGMVVMSVFVGVIGTYIALRDIIG 403
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 5e-47
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-24
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  165 bits (421), Expect = 5e-47
 Identities = 108/409 (26%), Positives = 187/409 (45%), Gaps = 29/409 (7%)

Query: 31  KTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL- 88
             S ++  FN + A+ G G+LS PYA    GW+  L+LL ++   + Y+  L+ +C    
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 89  ----DSNIKSYPDIGDRAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIE 144
                   KSY D+G R FG  G++++   + + L+ V   +LI  GDNL  +F +F   
Sbjct: 62  DKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF-- 119

Query: 145 VGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSY---VSASGVLASIITLGSIFSTGAFD 201
                  +   F++I  LI +P  ++ NLS LS    V+A   L  +I + S+   G   
Sbjct: 120 --DTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLT 177

Query: 202 GVGFHRKG--TLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFSH---VLLVCFF 256
             G    G  T +    +  +I +  F +  H V   +  +MK   +F     VLL    
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAII 237

Query: 257 LCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVV- 315
           + T +Y  + + GYL FG+ V+  I LNLP +     +A    +++ +  Y L   P+  
Sbjct: 238 IVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQ 297

Query: 316 ---NTIKMRFSTQYSKRPYSLL---ISTGFVISTVIVALVVPFFGYLMALVGAFLSMTAS 369
              N +  + ++        LL   I +G V+ T ++A+ VPF G  ++LVGA      +
Sbjct: 298 IVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLT 357

Query: 370 VILPCLCYLKISG----AYRRHGCEMMAILGIVSLAVLIAVVGTYVSLV 414
            ILP L +LK+      +  +     +  +  + + +L+   G    ++
Sbjct: 358 FILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 421
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.97
PRK10483414 tryptophan permease; Provisional 99.96
PRK15132403 tyrosine transporter TyrP; Provisional 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.92
TIGR00814397 stp serine transporter. The HAAAP family includes 99.91
PRK10655438 potE putrescine transporter; Provisional 99.84
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.81
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.81
PRK15049499 L-asparagine permease; Provisional 99.8
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.79
PRK10644445 arginine:agmatin antiporter; Provisional 99.79
PRK10249458 phenylalanine transporter; Provisional 99.79
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.78
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.78
TIGR00909429 2A0306 amino acid transporter. 99.76
PRK11021410 putative transporter; Provisional 99.76
PRK10746461 putative transport protein YifK; Provisional 99.76
PRK11387471 S-methylmethionine transporter; Provisional 99.76
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.75
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.74
TIGR00930 953 2a30 K-Cl cotransporter. 99.74
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.73
PRK10836489 lysine transporter; Provisional 99.73
PRK10238456 aromatic amino acid transporter; Provisional 99.73
PRK10580457 proY putative proline-specific permease; Provision 99.73
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.73
TIGR00913478 2A0310 amino acid permease (yeast). 99.69
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.69
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.68
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.68
TIGR00911501 2A0308 L-type amino acid transporter. 99.68
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.66
PF03845320 Spore_permease: Spore germination protein; InterPr 99.64
COG0531466 PotE Amino acid transporters [Amino acid transport 99.57
PRK15238496 inner membrane transporter YjeM; Provisional 99.51
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.51
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.51
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.5
COG0833541 LysP Amino acid transporters [Amino acid transport 99.47
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.46
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.36
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.27
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.95
KOG3832319 consensus Predicted amino acid transporter [Genera 98.89
COG3949349 Uncharacterized membrane protein [Function unknown 98.74
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.58
COG1457442 CodB Purine-cytosine permease and related proteins 98.55
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.48
PRK11375484 allantoin permease; Provisional 98.44
TIGR00813407 sss transporter, SSS family. have different number 98.42
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.39
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.35
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.34
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.3
PRK12488 549 acetate permease; Provisional 98.3
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.25
PRK11017404 codB cytosine permease; Provisional 98.21
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.19
PRK09395 551 actP acetate permease; Provisional 98.12
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.1
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.02
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.99
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.98
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.93
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.89
PRK15419502 proline:sodium symporter PutP; Provisional 97.89
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.82
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.8
PRK10484523 putative transporter; Provisional 97.72
PRK00701439 manganese transport protein MntH; Reviewed 97.65
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.65
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.58
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.04
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 96.95
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.89
PRK15015 701 carbon starvation protein A; Provisional 96.75
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.36
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.03
PHA02764399 hypothetical protein; Provisional 95.7
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 95.69
PRK15433439 branched-chain amino acid transport system 2 carri 95.66
COG4147529 DhlC Predicted symporter [General function predict 95.1
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.3
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.01
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 93.96
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 91.98
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.56
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 90.18
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 90.05
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 88.79
PRK09950506 putative transporter; Provisional 88.75
KOG2466 572 consensus Uridine permease/thiamine transporter/al 87.65
PRK15433439 branched-chain amino acid transport system 2 carri 86.66
PRK09928 679 choline transport protein BetT; Provisional 83.32
PLN02680232 carbon-monoxide oxygenase 82.95
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-56  Score=414.89  Aligned_cols=383  Identities=24%  Similarity=0.351  Sum_probs=341.8

Q ss_pred             CCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCCCHHHHHH-
Q 014634           28 RTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWL-SLLLLFLIAAATFYSGLLIKRCMDL-----DSNIKSYPDIGD-  100 (421)
Q Consensus        28 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~-----~~~~~s~~~l~~-  100 (421)
                      .++.+|..++..|++++++|+|+|++|+||+++|++ |.+..++.+.++.||++.+++|..+     .....+|.|.++ 
T Consensus        43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~  122 (449)
T KOG1304|consen   43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES  122 (449)
T ss_pred             CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence            356799999999999999999999999999999998 9999999999999999999998654     223456666654 


Q ss_pred             ---------HhcCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhccc
Q 014634          101 ---------RAFGRNGRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLD  171 (421)
Q Consensus       101 ---------~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~  171 (421)
                               +.+||++|.+++..+.+.++|.|++|++++++.++++++......     .+.+.++.+..+...+++++|
T Consensus       123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~-----~s~~~~i~~~~~~~lll~~Ir  197 (449)
T KOG1304|consen  123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGV-----LSVRLYILIQLPPLLLLNLIR  197 (449)
T ss_pred             HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCC-----ccHHHHHHHHHHHHHHHHHHH
Confidence                     457899999999999999999999999999999999988332211     124577778888899999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHHhhhhccccccccccccccccccCchhhhhhhhhhccccccchhhHHhhhhccccch---
Q 014634          172 NLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKKHQFS---  248 (421)
Q Consensus       172 ~~~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~---  248 (421)
                      |++.++.+|.+++++++..++++.++...+..+.++.+...+|.+++..+|+.+|||+|+.++.|++++||+|++++   
T Consensus       198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~  277 (449)
T KOG1304|consen  198 NLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPF  277 (449)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCcc
Confidence            99999999999999999999998888877655555555566688999999999999999999999999999999999   


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhhcchhhhhhhhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHhcccccC-
Q 014634          249 HVLLVCFFLCTFIYASMAVFGYLMFGSEVQSQITLNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMRFSTQYS-  327 (421)
Q Consensus       249 ~~~~~~~~~~~~~y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~-  327 (421)
                      +++..++.+++++|..+|++||+.|||++++.++.|+|+ ++.....+.++++.++.+||++++|..+.+++.+.++.+ 
T Consensus       278 gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~  356 (449)
T KOG1304|consen  278 GVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE  356 (449)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc
Confidence            999999999999999999999999999999999999999 778888889999999999999999999999997654332 


Q ss_pred             --CCCceehhHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCcc--ccchhHHHHHHHHHHHHH
Q 014634          328 --KRPYSLLISTGFVISTVIVALVVPFFGYLMALVGAFLSMTASVILPCLCYLKISGAYR--RHGCEMMAILGIVSLAVL  403 (421)
Q Consensus       328 --~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~--~~~~~~~~~~~~~~~g~~  403 (421)
                        .++.....|..++++++.+|..+|+++.+++++|+++++.+++++|++++++..++++  +.+|+.+.+..++++|++
T Consensus       357 ~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~  436 (449)
T KOG1304|consen  357 NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVF  436 (449)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHH
Confidence              3456889999999999999999999999999999999999999999999999988764  567899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014634          404 IAVVGTYVSLVQI  416 (421)
Q Consensus       404 ~~~~g~~~si~~l  416 (421)
                      .++.|||.++.++
T Consensus       437 ~~v~Gty~si~~i  449 (449)
T KOG1304|consen  437 GFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHhhhhhcC
Confidence            9999999999763

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PLN02680 carbon-monoxide oxygenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query421
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 37/285 (12%), Positives = 73/285 (25%), Gaps = 97/285 (34%)

Query: 5   DASNLDVPFLVDEEANHLGNDDSRTSKT-----SFFKTCFNGVNALSGVGILSTPYALAS 59
                D  FL      H+  D    + T     S      +             P  + +
Sbjct: 274 FKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-------CRPQDLPREVLT 324

Query: 60  GGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRNGRIIVSIFMNIEL 119
               +   L +IA         I+   D  +   ++  +           I+   +N+  
Sbjct: 325 T---NPRRLSIIAE-------SIR---DGLATWDNWKHVNCDKLTT----IIESSLNV-- 365

Query: 120 YLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFV--VIIALIILPTVWLD------ 171
                    LE      +F   ++            F     I  I+L  +W D      
Sbjct: 366 ---------LEPAEYRKMFDRLSV------------FPPSAHIPTILLSLIWFDVIKSDV 404

Query: 172 --------NLSLLSYVSASGVLASIITLGSIFSTGAFDGVGFHRKGTLVN---------- 213
                     SL+        + SI ++         +    HR   +V+          
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRS--IVDHYNIPKTFDS 461

Query: 214 WKGIPTSISLYAFCYCAH-----------PVFPTLYTS---MKKK 244
              IP  +  Y + +  H            +F  ++     +++K
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.86
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.8
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.68
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.02
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.24
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.79
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.7
4ain_A539 Glycine betaine transporter BETP; membrane protein 89.74
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.86  E-value=1.9e-19  Score=176.57  Aligned_cols=347  Identities=13%  Similarity=0.151  Sum_probs=224.3

Q ss_pred             CCCCCcchHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhcCcc
Q 014634           27 SRTSKTSFFKTCFNGVNALSGVGILSTPYALASGGWLSLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRAFGRN  106 (421)
Q Consensus        27 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~~G~~  106 (421)
                      +++|+.+.+++++..+++++|+|++.+|...++.|..+++.+++.++........+.|...+.|+..+..+..++.+||+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            46789999999999999999999999999888888668888888888888888999999888888889999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccchHHHHHHHHHHHhhhcccCCChhHHHHHHHHHH
Q 014634          107 GRIIVSIFMNIELYLVATGFLILEGDNLENLFPNFAIEVGGLTIGAKQSFVVIIALIILPTVWLDNLSLLSYVSASGVLA  186 (421)
Q Consensus       107 ~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~~~~l~~~s~~~~~~  186 (421)
                      .+++..+..++........+....++.+..+++....+       .......+...+..-....++.+...+++.+....
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------WVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH-------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc-------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            99999999999887777888888888887766543211       01122222233333344457788888887776666


Q ss_pred             HHHHHHhhhhccccc--ccccccc---ccccccCchhhhhhhhhhccccccchhhHHhhhhcc-ccchhHHHHHHHHHHH
Q 014634          187 SIITLGSIFSTGAFD--GVGFHRK---GTLVNWKGIPTSISLYAFCYCAHPVFPTLYTSMKKK-HQFSHVLLVCFFLCTF  260 (421)
Q Consensus       187 ~~~~~~~i~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p-~~~~~~~~~~~~~~~~  260 (421)
                      .+..++.+.......  .....+.   ....++.++..++....|+|.|++......+|+||| |+.+|++..+..++.+
T Consensus       158 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~  237 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV  237 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence            555544444333221  1111111   111235678899999999999999999999999999 6789999999999999


Q ss_pred             HHHHHHhHHHHhhhcchh----hhhh---hhcCCCchhhHHHHHHHHHhhhhhhhcccchHHHHHHHh-----cc----c
Q 014634          261 IYASMAVFGYLMFGSEVQ----SQIT---LNLPTTKLSSRVAIYTTLVNPIAKYALMVTPVVNTIKMR-----FS----T  324 (421)
Q Consensus       261 ~y~~~~~~gy~~fg~~~~----~~il---~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~-----~~----~  324 (421)
                      +|.+..+......+.+..    ++..   .... .++...+......+..+.+..-..+...+.+...     ++    +
T Consensus       238 ~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~  316 (445)
T 3l1l_A          238 CYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR  316 (445)
T ss_dssp             HHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGC
T ss_pred             HHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHh
Confidence            999998877776654321    1111   1111 1222333334444455555444443333333221     11    1


Q ss_pred             ccCC-CCceehhHHHHHHHHHHHHhh--cc----chHHHHHHhhhhhhhhhHhhhhhHHHHHHhcCcc
Q 014634          325 QYSK-RPYSLLISTGFVISTVIVALV--VP----FFGYLMALVGAFLSMTASVILPCLCYLKISGAYR  385 (421)
Q Consensus       325 ~~~~-~~~~~~~~~~~~~~~~~ia~~--~~----~~~~v~~~~G~~~~~~~~~ilP~l~~l~~~~~~~  385 (421)
                      .+++ .+.+.+.-...  .+.++...  .|    .++.+.++.+  ....+.|.++.+.+++.+++++
T Consensus       317 ~~~~~~P~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          317 VNKAGTPVAGLIIVGI--LMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             CCTTCCCHHHHHHHHH--HHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             cCCCCCCHHHHHHHHH--HHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            1111 11122222221  12222222  22    3666777654  3457899999999999987763
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query421
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.26
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.26  E-value=0.08  Score=49.60  Aligned_cols=105  Identities=16%  Similarity=0.154  Sum_probs=63.5

Q ss_pred             CCCcchHHHHHHHHHhhhhhh-hchhHHHHHh-hcHH----HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHh
Q 014634           29 TSKTSFFKTCFNGVNALSGVG-ILSTPYALAS-GGWL----SLLLLFLIAAATFYSGLLIKRCMDLDSNIKSYPDIGDRA  102 (421)
Q Consensus        29 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~~~~-~G~~----g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~l~~~~  102 (421)
                      ++-.|..+-++..++..+|.| +.=.||-..+ .|..    -.+++++.+.-..+.=..+.|..++ .....+..+....
T Consensus         2 ~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-g~i~~~~~i~~~~   80 (509)
T d2a65a1           2 EHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-QGHGTTPAIFYLL   80 (509)
T ss_dssp             CCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TTCCSHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHh
Confidence            345677888999999999999 6689998755 6643    3444445555555555556665443 3667788877776


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014634          103 FGRNGRIIVSIFMNIELYLVATGFLILEGDNL  134 (421)
Q Consensus       103 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l  134 (421)
                      .+.+.-....+...+..+..+.-|....+-.+
T Consensus        81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l  112 (509)
T d2a65a1          81 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTL  112 (509)
T ss_dssp             SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            65433333344444444444454555544433